Query gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 792 No_of_seqs 244 out of 16744 Neff 7.6 Searched_HMMs 39220 Date Sun May 29 18:43:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764476.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK11091 aerobic respiration c 100.0 0 0 571.0 44.2 355 419-791 140-506 (779) 2 PRK10841 hybrid sensory kinase 100.0 0 0 560.0 40.2 330 432-791 355-691 (947) 3 PRK09959 hybrid sensory histid 100.0 0 0 548.9 40.6 364 417-791 559-937 (1197) 4 TIGR02966 phoR_proteo phosphat 100.0 0 0 535.7 33.0 331 431-788 3-339 (339) 5 PRK13557 histidine kinase; Pro 100.0 0 0 509.0 43.3 347 418-792 21-394 (538) 6 PRK11006 phoR phosphate regulo 100.0 0 0 508.1 41.3 332 427-791 91-424 (431) 7 PRK11360 sensory histidine kin 100.0 0 0 497.6 44.3 328 437-791 264-600 (607) 8 TIGR02956 TMAO_torS TMAO reduc 100.0 0 0 503.4 23.6 227 562-792 498-737 (1052) 9 PRK11466 hybrid sensory histid 100.0 0 0 488.5 32.8 229 557-791 432-663 (912) 10 PRK13560 hypothetical protein; 100.0 0 0 440.4 63.5 661 66-791 63-804 (807) 11 PRK09303 adaptive-response sen 100.0 0 0 476.0 35.9 304 459-791 68-376 (378) 12 PRK11107 hybrid sensory histid 100.0 0 0 481.3 31.7 233 555-791 279-519 (920) 13 PRK11073 glnL nitrogen regulat 100.0 0 0 429.1 39.9 327 436-791 9-348 (348) 14 PRK10490 sensor protein KdpD; 100.0 0 0 438.0 31.9 231 559-792 654-884 (895) 15 PRK10364 sensor protein ZraS; 100.0 0 0 418.6 32.0 234 543-791 217-450 (455) 16 PRK13837 two-component VirA-li 100.0 0 0 418.0 30.9 238 543-791 425-679 (831) 17 PRK11100 sensory histidine kin 100.0 0 0 401.6 32.7 217 570-791 257-474 (475) 18 PRK10549 signal transduction h 100.0 0 0 398.0 33.0 229 559-792 231-461 (467) 19 PRK09835 sensor kinase CusS; P 100.0 0 0 385.8 33.8 229 559-792 252-482 (482) 20 COG5002 VicK Signal transducti 100.0 0 0 391.1 28.9 349 413-791 89-449 (459) 21 COG2205 KdpD Osmosensitive K+ 100.0 0 0 379.6 29.0 227 563-792 654-881 (890) 22 PRK10337 sensor protein QseC; 100.0 0 0 365.9 31.3 222 560-788 225-446 (446) 23 PRK09470 cpxA two-component se 100.0 0 0 360.3 31.8 233 550-791 224-458 (461) 24 PRK10604 sensor protein RstB; 100.0 0 0 356.5 30.2 220 560-791 203-424 (433) 25 PRK10755 sensor protein BasS/P 100.0 0 0 355.1 30.9 227 553-790 127-355 (355) 26 PRK11086 sensory histidine kin 100.0 0 0 347.8 34.4 306 432-791 219-535 (541) 27 PRK09467 envZ osmolarity senso 100.0 0 0 342.3 30.7 227 549-792 211-437 (437) 28 PRK10815 sensor protein PhoQ; 100.0 0 0 340.6 31.7 221 562-792 259-479 (484) 29 TIGR01386 cztS_silS_copS heavy 100.0 0 0 343.4 23.2 222 560-789 252-483 (483) 30 COG3852 NtrB Signal transducti 100.0 4.2E-45 0 327.0 31.8 327 437-791 10-355 (363) 31 COG4191 Signal transduction hi 100.0 1.4E-45 0 329.0 28.3 239 544-792 357-603 (603) 32 TIGR02938 nifL_nitrog nitrogen 100.0 5.6E-45 0 326.0 27.6 465 193-790 4-496 (496) 33 COG4251 Bacteriophytochrome (l 100.0 2.8E-45 0 327.7 23.5 233 554-791 509-742 (750) 34 COG5000 NtrY Signal transducti 100.0 2E-41 0 301.6 32.8 349 410-791 338-709 (712) 35 COG0642 BaeS Signal transducti 100.0 2.9E-35 7.5E-40 259.4 32.1 216 568-791 114-330 (336) 36 TIGR02916 PEP_his_kin putative 100.0 2.9E-35 7.4E-40 259.4 25.3 225 546-789 459-696 (696) 37 PRK09776 putative sensor prote 100.0 9.1E-32 2.3E-36 235.5 40.7 367 176-557 287-686 (1116) 38 COG3290 CitA Signal transducti 100.0 6.6E-32 1.7E-36 236.4 29.9 310 431-791 212-532 (537) 39 PRK13560 hypothetical protein; 100.0 1.1E-30 2.8E-35 228.0 34.4 501 184-714 58-699 (807) 40 COG4192 Signal transduction hi 100.0 5.8E-31 1.5E-35 230.0 23.2 239 544-792 424-668 (673) 41 PRK09776 putative sensor prote 100.0 1.1E-26 2.7E-31 200.8 37.0 368 55-431 289-686 (1116) 42 smart00387 HATPase_c Histidine 100.0 2.6E-28 6.7E-33 211.8 15.5 110 682-791 1-111 (111) 43 pfam02518 HATPase_c Histidine 100.0 8.1E-28 2.1E-32 208.4 15.7 110 682-791 1-111 (111) 44 cd00075 HATPase_c Histidine ki 99.9 2.7E-26 6.8E-31 198.0 13.3 102 687-788 1-103 (103) 45 PRK11359 cAMP phosphodiesteras 99.9 2.5E-22 6.4E-27 170.8 29.8 224 67-304 9-257 (799) 46 PRK10618 phosphotransfer inter 99.9 1E-20 2.6E-25 159.8 35.5 331 418-791 333-669 (881) 47 PRK11359 cAMP phosphodiesteras 99.9 4.3E-20 1.1E-24 155.5 25.1 226 187-427 6-256 (799) 48 PRK13559 hypothetical protein; 99.9 2.3E-18 5.9E-23 143.6 32.5 298 436-792 47-363 (363) 49 KOG0519 consensus 99.9 5.8E-24 1.5E-28 182.0 3.0 233 553-791 200-489 (786) 50 PRK10547 chemotaxis protein Ch 99.9 3.5E-19 8.8E-24 149.3 21.7 162 617-790 315-515 (662) 51 COG0643 CheA Chemotaxis protei 99.8 1.2E-18 3.1E-23 145.5 19.4 167 612-790 365-573 (716) 52 PRK10935 nitrate/nitrite senso 99.8 5.6E-17 1.4E-21 134.2 25.8 190 574-792 366-564 (568) 53 PRK10600 nitrate/nitrite senso 99.7 7.5E-14 1.9E-18 112.7 26.6 185 579-791 372-557 (569) 54 PRK11091 aerobic respiration c 99.7 9.4E-16 2.4E-20 125.8 14.9 135 170-307 132-278 (779) 55 PRK11644 sensory histidine kin 99.7 8.3E-14 2.1E-18 112.4 23.9 183 579-791 314-497 (497) 56 COG4585 Signal transduction hi 99.7 6.9E-14 1.7E-18 113.0 22.9 196 563-790 169-365 (365) 57 TIGR02938 nifL_nitrog nitrogen 99.7 1.2E-15 3.1E-20 125.0 13.7 196 307-531 5-220 (496) 58 COG3920 Signal transduction hi 99.6 1.1E-12 2.9E-17 104.7 24.4 207 543-792 2-217 (221) 59 COG2972 Predicted signal trans 99.6 3E-12 7.7E-17 101.8 23.4 185 573-792 263-454 (456) 60 PRK13557 histidine kinase; Pro 99.6 7.5E-14 1.9E-18 112.8 13.7 125 192-319 27-168 (538) 61 PRK03660 anti-sigma F factor; 99.6 5.4E-14 1.4E-18 113.7 12.2 100 683-790 36-138 (146) 62 COG3850 NarQ Signal transducti 99.6 2.3E-11 5.8E-16 95.7 24.4 179 584-791 388-569 (574) 63 COG3275 LytS Putative regulato 99.5 1.8E-11 4.6E-16 96.5 20.2 171 575-791 371-552 (557) 64 pfam00512 HisKA His Kinase A ( 99.4 8.7E-13 2.2E-17 105.4 8.0 65 569-636 2-66 (66) 65 COG3851 UhpB Signal transducti 99.3 3.9E-09 9.9E-14 80.5 23.3 185 572-790 306-494 (497) 66 smart00388 HisKA His Kinase A 99.2 5.5E-11 1.4E-15 93.1 8.8 65 569-636 2-66 (66) 67 COG4564 Signal transduction hi 99.2 5.7E-09 1.4E-13 79.3 18.1 180 583-791 265-448 (459) 68 PRK10060 RNase II stability mo 99.2 1.2E-08 3.1E-13 77.1 18.9 176 119-308 46-236 (663) 69 pfam08448 PAS_4 PAS fold. The 99.1 4E-10 1E-14 87.2 8.1 99 199-300 1-110 (110) 70 PRK11006 phoR phosphate regulo 99.1 1.2E-08 3.1E-13 77.1 15.3 130 173-310 78-209 (431) 71 KOG0787 consensus 99.1 6.4E-08 1.6E-12 72.1 18.7 182 607-790 174-380 (414) 72 PRK10060 RNase II stability mo 99.1 6.8E-09 1.7E-13 78.8 12.9 208 201-432 15-236 (663) 73 cd00082 HisKA Histidine Kinase 99.1 6.1E-10 1.6E-14 86.0 7.4 63 568-632 3-65 (65) 74 PRK09959 hybrid sensory histid 99.0 9.5E-09 2.4E-13 77.8 12.1 135 174-310 557-703 (1197) 75 PRK13559 hypothetical protein; 99.0 2.7E-08 6.9E-13 74.7 12.7 112 191-305 43-169 (363) 76 PRK13558 bacterio-opsin activa 98.9 5.2E-08 1.3E-12 72.8 13.7 119 193-314 158-291 (674) 77 PRK13558 bacterio-opsin activa 98.9 1.2E-07 3.1E-12 70.2 15.0 121 300-431 152-284 (674) 78 PRK11360 sensory histidine kin 98.9 1.3E-07 3.4E-12 69.9 13.9 115 307-432 262-382 (607) 79 pfam00989 PAS PAS fold. The PA 98.9 1.9E-08 4.9E-13 75.7 8.7 99 194-295 2-112 (112) 80 PRK04069 serine-protein kinase 98.8 9.4E-08 2.4E-12 71.0 11.7 96 686-787 42-140 (158) 81 TIGR02040 PpsR-CrtJ transcript 98.8 2.3E-07 5.9E-12 68.3 13.1 266 75-342 1-298 (453) 82 COG3829 RocR Transcriptional r 98.7 2.8E-06 7.3E-11 60.8 16.8 50 555-607 419-468 (560) 83 pfam08448 PAS_4 PAS fold. The 98.7 1.9E-08 4.9E-13 75.7 5.6 41 440-480 1-41 (110) 84 pfam00989 PAS PAS fold. The PA 98.7 7.7E-08 2E-12 71.6 7.7 103 437-545 4-112 (112) 85 TIGR00229 sensory_box PAS doma 98.7 3.8E-07 9.6E-12 66.9 10.7 111 191-304 3-129 (130) 86 COG1389 DNA topoisomerase VI, 98.7 2.1E-07 5.2E-12 68.7 9.3 16 323-338 212-227 (538) 87 TIGR02966 phoR_proteo phosphat 98.6 7.6E-07 1.9E-11 64.8 10.9 116 189-309 2-122 (339) 88 TIGR01925 spIIAB anti-sigma F 98.6 1.3E-07 3.3E-12 70.0 6.8 104 672-787 29-135 (137) 89 PRK04184 DNA topoisomerase VI 98.6 4.8E-07 1.2E-11 66.1 9.4 16 543-558 433-449 (533) 90 PRK11073 glnL nitrogen regulat 98.6 2.5E-06 6.4E-11 61.2 12.8 113 307-430 8-122 (348) 91 TIGR01052 top6b DNA topoisomer 98.5 8.4E-07 2.2E-11 64.5 9.1 28 194-221 198-226 (662) 92 COG2172 RsbW Anti-sigma regula 98.5 3.8E-06 9.6E-11 60.0 11.5 97 683-787 37-140 (146) 93 TIGR00229 sensory_box PAS doma 98.4 3.4E-06 8.6E-11 60.3 9.8 115 435-555 6-130 (130) 94 PRK00095 mutL DNA mismatch rep 98.3 1.6E-06 4E-11 62.6 6.2 37 181-217 160-196 (612) 95 COG3829 RocR Transcriptional r 98.3 2.3E-05 5.7E-10 54.7 12.0 146 196-349 4-160 (560) 96 TIGR02040 PpsR-CrtJ transcript 98.1 2.8E-05 7.2E-10 54.0 8.5 264 198-478 1-307 (453) 97 PRK10820 DNA-binding transcrip 98.0 0.00044 1.1E-08 45.9 13.7 105 190-300 77-190 (513) 98 COG5000 NtrY Signal transducti 98.0 0.00071 1.8E-08 44.4 13.8 99 310-427 374-482 (712) 99 KOG0519 consensus 97.9 5.7E-06 1.4E-10 58.8 2.2 210 564-775 381-619 (786) 100 COG5385 Uncharacterized protei 97.9 0.0023 5.9E-08 40.9 16.8 195 572-790 18-214 (214) 101 TIGR00585 mutl DNA mismatch re 97.9 6.4E-05 1.6E-09 51.6 7.1 29 396-424 137-170 (367) 102 PRK10841 hybrid sensory kinase 97.9 0.0009 2.3E-08 43.7 12.9 114 182-314 346-465 (947) 103 pfam10090 DUF2328 Uncharacteri 97.8 0.0034 8.6E-08 39.8 16.1 171 586-779 3-175 (181) 104 COG5002 VicK Signal transducti 97.7 0.0014 3.6E-08 42.4 11.7 126 181-311 99-231 (459) 105 PRK10820 DNA-binding transcrip 97.6 0.0034 8.6E-08 39.8 12.3 51 302-352 76-126 (513) 106 COG0323 MutL DNA mismatch repa 97.4 0.00062 1.6E-08 44.8 6.3 127 83-216 45-197 (638) 107 PRK11086 sensory histidine kin 97.3 0.013 3.4E-07 35.7 30.6 107 305-429 220-332 (541) 108 smart00091 PAS PAS domain. PAS 97.3 0.00044 1.1E-08 45.8 4.9 39 439-477 6-44 (67) 109 cd00130 PAS PAS domain; PAS mo 97.2 0.0031 7.9E-08 40.0 8.7 36 444-479 2-37 (103) 110 COG2202 AtoS FOG: PAS/PAC doma 97.2 0.02 5.1E-07 34.5 13.7 62 417-478 95-156 (232) 111 TIGR01924 rsbW_low_gc anti-sig 97.0 0.0026 6.7E-08 40.5 6.5 97 687-787 44-144 (161) 112 PRK11388 DNA-binding transcrip 97.0 0.02 5E-07 34.5 10.9 151 188-350 57-247 (639) 113 COG2202 AtoS FOG: PAS/PAC doma 97.0 0.029 7.5E-07 33.4 17.0 52 293-344 95-150 (232) 114 smart00091 PAS PAS domain. PAS 97.0 0.0014 3.7E-08 42.3 4.9 56 194-252 2-58 (67) 115 cd00130 PAS PAS domain; PAS mo 96.9 0.011 2.7E-07 36.4 9.2 38 315-352 1-38 (103) 116 PTZ00272 heat shock protein 83 96.8 0.016 4.1E-07 35.2 8.8 36 619-659 630-665 (701) 117 COG3852 NtrB Signal transducti 96.5 0.043 1.1E-06 32.2 9.8 90 195-289 9-106 (363) 118 PRK05218 heat shock protein 90 96.2 0.0082 2.1E-07 37.1 4.6 33 620-657 579-611 (612) 119 PRK11388 DNA-binding transcrip 96.1 0.1 2.6E-06 29.7 11.0 37 192-228 202-238 (639) 120 pfam08447 PAS_3 PAS fold. The 96.1 0.034 8.6E-07 32.9 7.4 75 456-535 1-78 (90) 121 smart00433 TOP2c Topoisomerase 95.9 0.0021 5.3E-08 41.2 0.5 11 402-412 237-247 (594) 122 COG0326 HtpG Molecular chapero 95.6 0.027 6.9E-07 33.6 5.0 44 161-214 171-214 (623) 123 COG3290 CitA Signal transducti 95.6 0.17 4.3E-06 28.1 26.1 117 187-310 209-332 (537) 124 COG3283 TyrR Transcriptional r 95.3 0.17 4.4E-06 28.1 8.3 87 194-286 81-168 (511) 125 PRK05644 gyrB DNA gyrase subun 95.2 0.0027 6.8E-08 40.5 -1.2 11 732-742 691-701 (725) 126 COG3283 TyrR Transcriptional r 95.1 0.094 2.4E-06 29.9 6.6 61 306-377 80-140 (511) 127 PTZ00130 heat shock protein 90 94.3 0.095 2.4E-06 29.9 5.0 22 186-210 259-280 (824) 128 PTZ00108 DNA topoisomerase II; 94.1 0.057 1.4E-06 31.4 3.5 15 447-461 1032-1046(1506) 129 PRK05559 DNA topoisomerase IV 94.0 0.0059 1.5E-07 38.1 -1.7 12 402-413 270-281 (633) 130 KOG3558 consensus 94.0 0.26 6.7E-06 26.9 6.6 63 74-136 123-185 (768) 131 TIGR01059 gyrB DNA gyrase, B s 93.7 0.051 1.3E-06 31.7 2.6 51 550-601 588-638 (818) 132 COG5381 Uncharacterized protei 93.5 0.19 4.9E-06 27.8 5.3 87 687-774 64-163 (184) 133 PRK13719 conjugal transfer tra 93.5 0.51 1.3E-05 24.8 10.6 32 195-226 21-52 (220) 134 KOG1979 consensus 93.4 0.16 4.1E-06 28.3 4.7 29 83-114 49-77 (694) 135 PTZ00109 DNA gyrase subunit b; 92.7 0.032 8.1E-07 33.1 0.3 33 127-159 94-127 (941) 136 COG0187 GyrB Type IIA topoisom 91.9 0.043 1.1E-06 32.2 0.2 10 403-412 274-283 (635) 137 KOG1978 consensus 90.9 0.25 6.5E-06 26.9 3.3 23 186-208 168-190 (672) 138 KOG1229 consensus 90.1 0.69 1.8E-05 23.9 4.9 54 188-245 153-206 (775) 139 KOG0355 consensus 88.6 0.62 1.6E-05 24.3 3.8 56 683-738 710-774 (842) 140 KOG1977 consensus 88.5 1.3 3.4E-05 22.0 5.4 16 753-768 1067-1082(1142) 141 COG0813 DeoD Purine-nucleoside 87.6 0.54 1.4E-05 24.7 3.0 10 396-405 54-63 (236) 142 TIGR01055 parE_Gneg DNA topois 84.9 1 2.6E-05 22.8 3.2 49 392-449 266-318 (647) 143 COG2461 Uncharacterized conser 82.5 3 7.6E-05 19.6 6.5 108 436-554 292-404 (409) 144 KOG0019 consensus 81.2 1.7 4.3E-05 21.3 3.1 10 204-213 243-252 (656) 145 KOG0020 consensus 80.9 3.4 8.6E-05 19.2 4.6 27 679-705 724-750 (785) 146 COG3887 Predicted signaling pr 80.8 3.4 8.7E-05 19.2 11.1 102 190-308 72-173 (655) 147 PRK11677 cytochrome d ubiquino 72.3 5.7 0.00015 17.7 5.7 21 544-564 27-47 (134) 148 PRK03124 S-adenosylmethionine 63.0 8.7 0.00022 16.4 6.0 76 667-742 6-99 (127) 149 pfam08670 MEKHLA MEKHLA domain 60.2 9.7 0.00025 16.1 4.4 37 442-478 39-77 (148) 150 pfam06305 DUF1049 Protein of u 59.9 9.8 0.00025 16.1 7.3 42 23-64 34-75 (80) 151 TIGR02373 photo_yellow photoac 58.4 1.3 3.2E-05 22.2 -1.7 55 430-484 14-68 (126) 152 TIGR01083 nth endonuclease III 51.4 6.4 0.00016 17.3 0.9 12 546-557 152-163 (192) 153 pfam08446 PAS_2 PAS fold. The 47.0 16 0.0004 14.7 7.2 28 451-478 23-50 (107) 154 pfam05127 DUF699 Putative ATPa 46.4 16 0.00041 14.6 2.7 42 719-760 76-120 (160) 155 TIGR01622 SF-CC1 splicing fact 46.1 13 0.00032 15.3 1.8 12 535-546 484-495 (531) 156 PRK10506 hypothetical protein; 43.9 17 0.00044 14.4 9.7 126 22-158 10-143 (155) 157 PRK08965 putative monovalent c 43.6 18 0.00045 14.3 3.0 60 680-743 94-153 (161) 158 TIGR01605 PYST-D Plasmodium yo 42.5 13 0.00034 15.2 1.4 11 755-765 13-23 (55) 159 COG3284 AcoR Transcriptional a 41.0 19 0.00049 14.1 10.3 157 183-350 67-267 (606) 160 TIGR00107 deoD purine nucleosi 40.6 19 0.00049 14.0 2.1 10 396-405 50-59 (234) 161 KOG0501 consensus 40.5 19 0.0005 14.0 12.3 84 93-178 43-140 (971) 162 PRK01706 S-adenosylmethionine 40.1 20 0.0005 14.0 6.0 77 666-742 7-102 (123) 163 TIGR03103 trio_acet_GNAT GNAT- 38.2 21 0.00054 13.8 5.2 32 401-435 333-367 (547) 164 TIGR01815 TrpE-clade3 anthrani 35.3 23 0.0006 13.5 2.0 86 691-789 536-636 (726) 165 TIGR02791 VirB5 P-type DNA tra 33.8 24 0.0006 13.4 1.6 12 459-470 69-80 (233) 166 pfam08066 PMC2NT PMC2NT (NUC01 33.2 25 0.00064 13.3 5.2 51 608-659 25-75 (91) 167 pfam00862 Sucrose_synth Sucros 32.8 26 0.00065 13.2 3.1 157 294-471 193-355 (550) 168 pfam02675 AdoMet_dc S-adenosyl 32.6 26 0.00066 13.2 5.8 63 678-740 11-91 (107) 169 TIGR02810 agaZ_gatZ D-tagatose 32.6 26 0.00066 13.2 4.3 37 279-315 169-216 (430) 170 TIGR00868 hCaCC calcium-activa 32.2 26 0.00067 13.2 2.8 38 714-751 645-683 (874) 171 TIGR02749 prenyl_cyano solanes 31.7 24 0.00061 13.4 1.3 28 548-575 267-296 (325) 172 pfam01899 MNHE Na+/H+ ion anti 30.4 28 0.00071 13.0 4.3 52 690-744 48-99 (106) 173 PRK11564 stationary phase indu 29.1 29 0.00075 12.8 7.0 17 720-736 341-357 (426) 174 pfam11853 DUF3373 Protein of u 27.8 31 0.00078 12.7 5.2 39 37-75 22-60 (485) 175 KOG3561 consensus 27.7 31 0.00079 12.6 4.1 85 120-240 55-139 (803) 176 KOG1232 consensus 27.6 31 0.00079 12.6 4.8 167 563-779 301-473 (511) 177 TIGR03330 SAM_DCase_Bsu S-aden 27.5 31 0.0008 12.6 5.8 72 668-739 6-95 (112) 178 TIGR00677 fadh2_euk methylenet 27.0 32 0.00081 12.6 1.3 36 621-658 270-306 (312) 179 COG4362 Nitric oxide synthase, 26.4 33 0.00083 12.5 5.5 72 294-367 78-152 (355) 180 pfam07045 DUF1330 Protein of u 25.1 34 0.00088 12.3 3.5 33 759-791 9-49 (65) 181 PRK06841 short chain dehydroge 23.7 36 0.00093 12.2 3.4 18 293-310 68-85 (255) 182 PRK06124 gluconate 5-dehydroge 23.7 36 0.00093 12.2 3.4 21 682-702 224-244 (259) 183 TIGR01120 rpiB ribose 5-phosph 23.3 25 0.00064 13.3 0.2 15 684-698 42-56 (143) 184 COG2015 Alkyl sulfatase and re 23.1 37 0.00095 12.1 6.6 105 204-323 64-171 (655) 185 KOG1845 consensus 23.0 34 0.00087 12.4 0.8 11 197-207 157-167 (775) 186 TIGR01818 ntrC nitrogen regula 22.8 38 0.00096 12.1 3.0 10 571-580 321-330 (471) 187 KOG4013 consensus 21.5 40 0.001 11.9 1.9 17 401-418 61-77 (255) 188 TIGR02406 ectoine_EctA L-2,4-d 21.4 34 0.00088 12.3 0.6 13 456-468 111-123 (162) 189 cd04680 Nudix_Hydrolase_21 Mem 21.0 41 0.0011 11.8 1.2 26 318-343 4-29 (120) 190 TIGR02470 sucr_synth sucrose s 20.7 42 0.0011 11.8 4.1 26 200-225 312-339 (790) 191 pfam03281 Mab-21 Mab-21 protei 20.6 42 0.0011 11.8 4.0 16 418-434 122-137 (360) 192 PRK07831 short chain dehydroge 20.5 42 0.0011 11.7 3.2 30 681-711 228-257 (261) 193 TIGR00519 asnASE_I L-asparagin 20.4 42 0.0011 11.7 2.4 60 116-212 60-119 (347) 194 pfam11359 gpUL132 Glycoprotein 20.4 42 0.0011 11.7 2.2 29 437-465 146-176 (235) 195 PRK01631 hypothetical protein; 20.3 43 0.0011 11.7 4.1 32 421-455 27-58 (76) No 1 >PRK11091 aerobic respiration control sensor protein ArcB; Provisional Probab=100.00 E-value=0 Score=571.04 Aligned_cols=355 Identities=23% Similarity=0.357 Sum_probs=291.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHH Q ss_conf 57999999999999999999996203432899689848864058887828987894389838898877763025611468 Q gi|255764476|r 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 (792) Q Consensus 419 ITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 498 (792) |.+|++.+..+...-...+..+|+.++.|..-+.||++.-||++|+.++|++++++.|.+..+-........+...+. . T Consensus 140 ~~~r~~~q~~l~~~~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~G~~e~eliG~t~~d~~~~e~a~~~~~~D~-~ 218 (779) T PRK11091 140 IKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLVGLTPKDVYSPEAAEKVIETDE-K 218 (779) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHH-H T ss_conf 999899999999988999988502875157877987653410999988099989984998355279988999997389-9 Q ss_pred HHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEECCC--C---CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899874026544311568999725038--8899997058--8---76631232068999988889999999999999999 Q gi|255764476|r 499 LFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPN--A---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 (792) Q Consensus 499 ~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~pl~d--g---~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~ 571 (792) .+.. .....++-.+..+||+. ++..-+|..| | +.+...+|||+||++|+ +||+|+|.|++ T Consensus 219 v~~~------~~~~~~e~w~~~~dG~~~~~e~~k~P~~d~~g~~~G~~g~~rDITerk~aee-------aLE~AsraKS~ 285 (779) T PRK11091 219 VFRH------NVSLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQD-------ALEKASRDKTT 285 (779) T ss_pred HHHC------CCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHH-------HHHHHHHHHHH T ss_conf 9864------7982111346648986678998640135389978878630016017789999-------99999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH Q ss_conf 99996666322589999999997357778899899999999999999999999999999885149830002330699999 Q gi|255764476|r 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 (792) Q Consensus 572 F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i 651 (792) |+++||||||||||+|+||++||.+. +|+++|++|++.|..|+++|+.|||||||||||++|+++++.+|||+.+++ T Consensus 286 FLAnMSHEIRTPLNgIlG~seLL~~t---~L~~eQre~l~~I~~S~~~Ll~LINDILD~SKIEaGkl~l~~~~fdl~~ll 362 (779) T PRK11091 286 FISTISHELRTPLNGIVGLSRMLLDT---ELTAEQEKYLKTIHVSAITLGNIFNDIIDMDKMDRRKLQLDNQPVDFTDFL 362 (779) T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHH T ss_conf 99872687565399999999998079---999999999999999999999999999999999669967887767599999 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-CEEEEEEEECCCC Q ss_conf 9999999999984896899995698608-9987899999999998867753888688999999879-9899999978897 Q gi|255764476|r 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSS 729 (792) Q Consensus 652 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~-~~v~i~V~D~G~G 729 (792) +++...+.+.+..+++.+.+++++++|. +.+|+.||+|||.||++||+|||+.|+ |.+++...+ ..+.|+|+|||+| T Consensus 363 ~~v~~~~~~~A~~Kgl~l~~~~~~~lP~~v~gD~~RLrQIL~NLlsNAIKFT~~G~-V~l~v~~~~~~~l~f~V~DTGiG 441 (779) T PRK11091 363 ADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYEDGDMLHFEVEDSGIG 441 (779) T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCEEEEEEEECCCC T ss_conf 99999999999974988999978999862863899999999999999977389997-79999982798899999957999 Q ss_pred CCHHHHHHHCCCCEECCCC--CCC-CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 8977865414883762689--888-8566379999999996198699997889943999997347 Q gi|255764476|r 730 IPEDMCKSVFNRFVSNAHR--GQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 730 I~~e~~~riF~~F~~~~~~--~~~-~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) ||++.+++||+||++...+ +++ +||||||+|||++|++|||+|+|+|++|+||||+|+||.. T Consensus 442 I~~e~l~~IF~~F~Q~~~s~~~r~~~GTGLGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lpl~ 506 (779) T PRK11091 442 IPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHAP 506 (779) T ss_pred CCHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECC T ss_conf 99999998705756066787776778876079999999998499799995599871799999766 No 2 >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Probab=100.00 E-value=0 Score=560.04 Aligned_cols=330 Identities=25% Similarity=0.396 Sum_probs=281.2 Q ss_pred HHHHHHHHHHHCCCCEEEEC-CCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC Q ss_conf 99999999962034328996-89848864058887828987894389838898877763025611468899874026544 Q gi|255764476|r 432 LVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510 (792) Q Consensus 432 l~~~q~~~ld~l~e~vav~~-~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 510 (792) ..+..+..+.+.+.|++++. +||..+++|......+..- .++. ...+...+.+ T Consensus 355 ~e~fnr~~i~~apvg~~~l~~~dg~~~~~n~~~~~~~~~~--------------------~~~~--~~~~~~~~~~---- 408 (947) T PRK10841 355 HEQFNRKIVASAPVGICILRTSDGTNILSNELAHNYLNML--------------------THED--RQRLTQIICG---- 408 (947) T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHHHHC--------------------CCCH--HHHHHHHHHC---- T ss_conf 8887788986177137999706886331038999987623--------------------7552--8999999861---- Q ss_pred CCEEEEEEEECCEEEEEEEEEECCC-C-CE-EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3115689997250388899997058-8-76-6312320689999888899999999999999999999666632258999 Q gi|255764476|r 511 RKSLQGTLELLSDSVLEYSIIPLPN-A-QT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 (792) Q Consensus 511 r~~~~~~~~~~dG~~~~~~~~pl~d-g-~~-l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I 587 (792) +..-...+...+++++..+.+|..= | .+ +.++.|||.||++|+.|++.++|+|+||+.|++|+++||||||||||+| T Consensus 409 ~~~~~~~~~~~~~~~l~~~~~~~ry~~~~v~~c~~~Disar~~~e~~L~~a~~AAE~AN~AKS~FLAnMSHEIRTPLnGI 488 (947) T PRK10841 409 QQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGI 488 (947) T ss_pred CCCCCEEEEECCCCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHH T ss_conf 37883489935985799998653126860799999854078999999999999999999999899875856436128999 Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999973577788998999999999999999999999999998851498300023306999999999999999984896 Q gi|255764476|r 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 (792) Q Consensus 588 ~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i 667 (792) +|++|||.+. +|++.|++|++.|.+|++.|+.||||||||||||||+|+++..|||+.+++++++..+.+.+.+|++ T Consensus 489 lG~lELL~~t---~L~~~Qr~~l~tI~~Ss~~LL~lINDILDfSKIEAGkl~Le~~~F~l~~lv~~v~~~~~~~A~~K~L 565 (947) T PRK10841 489 IGNLDLLQTK---ELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVKKQL 565 (947) T ss_pred HHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999998079---9998999999999999999999999999999880498479852568999999999999999997398 Q ss_pred EEEEEECCCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECC Q ss_conf 899995698608-9987899999999998867753888688999999879989999997889789778654148837626 Q gi|255764476|r 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 (792) Q Consensus 668 ~l~~~~~~~~~~-v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~ 746 (792) .|.+.++|++|. +.||+.||+||+.||++||+|||+.|+ |.+++...++.+.|+|+|||+||+++.+++||+||++.+ T Consensus 566 ~L~~~idp~vP~~v~GDp~RLrQIL~NLLsNAIKFT~~G~-I~L~V~~~~~~L~fsV~DTGIGIsee~~~~LFepF~QaD 644 (947) T PRK10841 566 GLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDTGC-IILHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG 644 (947) T ss_pred EEEEEECCCCCCCEEECHHHHHHHHHHHHHHHEEECCCCE-EEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCHHHCCC T ss_conf 7999979999965860688999999998877746679958-999999849999999998289989999998847111578 Q ss_pred CC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 89--8888566379999999996198699997889943999997347 Q gi|255764476|r 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 747 ~~--~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) .+ .+++||||||||||++|++|||+|+|+|++|+||+|+|+||.. T Consensus 645 ~S~tR~yGGTGLGLAI~krLVeLMGG~I~VeSe~G~GStFtf~LPL~ 691 (947) T PRK10841 645 TGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTVRIPLY 691 (947) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC T ss_conf 75434579987419999999997599589991699807999997564 No 3 >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Probab=100.00 E-value=0 Score=548.92 Aligned_cols=364 Identities=21% Similarity=0.323 Sum_probs=283.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 59579999999999999999999962034328996898488640588878289878943898388988777630256114 Q gi|255764476|r 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 (792) Q Consensus 417 ~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 496 (792) +-|-.|++.|++++..+..++..+|+++.+|.+.+.+|++..||.+|+..|+-+......-+. .... .+. .+. T Consensus 559 r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~~~~~~~-~~~~---~~~---~~~ 631 (1197) T PRK09959 559 RSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPL-ENSE---SPF---KDV 631 (1197) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCC-CCCC---CHH---HHH T ss_conf 999999999999998899999998369987699825561224118889875231444213565-3222---215---677 Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCEE----EEEE-EEEECCCC--C-EEEECCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6889987402654431156899972503----8889-99970588--7-6631232068999988889999999999999 Q gi|255764476|r 497 WDLFAAIITSFDDERKSLQGTLELLSDS----VLEY-SIIPLPNA--Q-TMLTFVNVTDSVRAERALTEKNEALRKADEI 568 (792) Q Consensus 497 ~~~~~~~i~~~~~~r~~~~~~~~~~dG~----~~~~-~~~pl~dg--~-~l~~~~DIT~~k~~E~aL~e~~eale~a~~l 568 (792) +...........+.+....-.+...+|. +..+ ...++|.+ + .+..+.|||++|++|++|++.++++|+|++. T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~~Ae~An~A 711 (1197) T PRK09959 632 FSNTHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAINATVA 711 (1197) T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77778998753101210001453057754236775310003764444010115464128999999999999999999888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECH Q ss_conf 999999966663225899999999973577788998999-9999999999999999999999988514983000233069 Q gi|255764476|r 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 (792) Q Consensus 569 k~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~-e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl 647 (792) |++|+++||||||||||+|+|+++||... +++++|+ ++++.|..|+++|+.||||||||||||+|+++++.+++|+ T Consensus 712 KS~FLA~MSHEIRTPLn~IiG~~eLL~~~---~l~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~~l 788 (1197) T PRK09959 712 KSQFLATMSHEIRTPISSIMGFLELLSGS---GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDI 788 (1197) T ss_pred HHHHHHHCCHHHCCHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH T ss_conf 88888747353165689999999998468---999899999999999999999998888899989853886214520179 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--EEC---CEEEE Q ss_conf 999999999999999848968999956986-089987899999999998867753888688999999--879---98999 Q gi|255764476|r 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDN---GDFIF 721 (792) Q Consensus 648 ~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~-~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~--~~~---~~v~i 721 (792) .+++++++..+.+.+..|++.|.++..... ..+.+|+.||+|||.|||+||+|||+.|+ |.|++. ..+ ..+.| T Consensus 789 ~~li~~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT~~G~-V~i~~~~~~~~~~~~~l~~ 867 (1197) T PRK09959 789 PTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKM 867 (1197) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCE-EEEEEEEEECCCCEEEEEE T ss_conf 999999999999999967968999558987513526788999999999875374687978-9999998651798069999 Q ss_pred EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 9997889789778654148837626898888566379999999996198699997889943999997347 Q gi|255764476|r 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) +|+|||+|||++.+++||+||++.+.+.+++||||||+|||++|++|||+|+|+|++|+||+|+|+||.+ T Consensus 868 ~V~DTGiGI~~~~~~~iF~pF~Q~s~~r~~~GTGLGLaI~k~LvelMgG~I~v~S~~G~GS~F~~~lpl~ 937 (1197) T PRK09959 868 TIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVE 937 (1197) T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC T ss_conf 9997787889889975367862477887889848359999999998799289993599944999999756 No 4 >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO).. Probab=100.00 E-value=0 Score=535.70 Aligned_cols=331 Identities=24% Similarity=0.340 Sum_probs=286.1 Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC Q ss_conf 99999999996203432899689848864058887828987894389838898877763025611468899874026544 Q gi|255764476|r 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510 (792) Q Consensus 431 ~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 510 (792) ++++..++.+..|++||.|++.+|.|.+||+++++++|+....-.|. ++..++ ..|+.-+.+..... . T Consensus 3 ~~~~rf~~a~~AlPDavv~ld~~~~I~W~N~~A~~~LGl~~p~D~Gq-~i~~l~-------R~P~F~~yl~~~~~----t 70 (339) T TIGR02966 3 ALLSRFRAAAQALPDAVVVLDEEGQIEWCNKAAERLLGLRWPDDLGQ-RITNLI-------RHPEFVEYLAAGRF----T 70 (339) T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCCCHHHCC-CHHHHC-------CCHHHHHHHHCCCC----C T ss_conf 68899999997589829997289837862148898627427345077-021210-------57679999733555----5 Q ss_pred CCE--EEEE-EEECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 311--5689-9972503888999970588766312320689999888899999999999999999999666632258999 Q gi|255764476|r 511 RKS--LQGT-LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 (792) Q Consensus 511 r~~--~~~~-~~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I 587 (792) ..+ .... ....+..+++....|+.++..|+.++|||+.++.|+ |+.+||||||||||||||.| T Consensus 71 ~~p~~L~~~~~p~~~~~~l~~r~~PY~~~~~Ll~~RDvT~l~rLe~--------------mRrDFVANVSHELRTPLTVl 136 (339) T TIGR02966 71 SEPEQLELPDSPINEERVLEIRIMPYGEEQKLLVARDVTRLRRLEQ--------------MRRDFVANVSHELRTPLTVL 136 (339) T ss_pred CCCCCEEECCCCCCCCCEEEEEEEEECCCCEEEEEECHHHHHHHHH--------------HHHHHCCCCCCCCCCCHHHH T ss_conf 7885311046888866479999997569837999876368999986--------------53431144521114540355 Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999973577788998999999999999999999999999998851498300023306999999999999999984896 Q gi|255764476|r 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 (792) Q Consensus 588 ~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i 667 (792) .||.|+|.+....+-++.++.|++.+.+.+.||..||+|+|.|||||++.-+..-++||+..+|+...........+++. T Consensus 137 ~GyLEtl~~~~~~~~~~~~~~~l~~M~~Q~~RM~~LV~dLL~LSrlE~~~~~~~~~~V~~~~ll~~l~~~A~~ls~~~~h 216 (339) T TIGR02966 137 RGYLETLEDGPVDEDPEEWNRALELMQEQSQRMQSLVEDLLTLSRLESAANPPEDEPVDVPALLDHLRDEAEALSQGKQH 216 (339) T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE T ss_conf 68999755236778808899999999999999999999998887641578884556568799999999999999711883 Q ss_pred EEEEEE-CCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECC Q ss_conf 899995-6986089987899999999998867753888688999999879989999997889789778654148837626 Q gi|255764476|r 668 RIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 (792) Q Consensus 668 ~l~~~~-~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~ 746 (792) ++.+++ ++++ .|.||+.+|+++|.||++|||||||+||+|+|+..+.++.++|+|+|||+||||+.++||+|+||+-+ T Consensus 217 ~I~~~~pd~~~-~~~G~e~~L~SAf~NLv~NAikYTp~gg~I~v~W~~~~~ga~fsV~DtG~GI~~eHipRLTERFYRVD 295 (339) T TIGR02966 217 QITFEIPDAGL-DLLGNEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDEGGAEFSVTDTGIGIAPEHIPRLTERFYRVD 295 (339) T ss_pred EEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHCCCCCCEEEEEC T ss_conf 89998238885-30144777999999998875300899887999999857803999987798987313775420012305 Q ss_pred CCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE Q ss_conf 898--888566379999999996198699997889943999997 Q gi|255764476|r 747 HRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 (792) Q Consensus 747 ~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~l 788 (792) .+. ..+||||||||||++++.|++++.|+|++|+||||+|.| T Consensus 296 ~~RSR~tGGTGLGLAIVKH~L~rH~a~L~I~Se~G~GS~F~~~F 339 (339) T TIGR02966 296 KSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 339 (339) T ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEC T ss_conf 33415788984336899998741487899998853760688759 No 5 >PRK13557 histidine kinase; Provisional Probab=100.00 E-value=0 Score=508.97 Aligned_cols=347 Identities=19% Similarity=0.233 Sum_probs=280.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC---CCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCC Q ss_conf 9579999999999999999999962034328996---8984886405888782898789438983889887776302561 Q gi|255764476|r 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494 (792) Q Consensus 418 DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~---~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 494 (792) |++++.. ....+.+++.+++|.|.| +||+|.|+|++|++|+||+.+++.|++ +..+.. | ..+. T Consensus 21 ~~~~~~~---------~~~~~~v~~~~~~~~~~d~~~~Dg~I~~vN~af~~~tGYs~eEviGk~-~~~L~~---p-~~~~ 86 (538) T PRK13557 21 DVSDHRS---------DIFFAAVETTRMPMIVTDPRQPDNPIVFANRAFLEMTGYAAEEIIGNN-CRFLQG---P-ETDR 86 (538) T ss_pred HHHHHHH---------HHHHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCC-HHHCCC---C-CCCH T ss_conf 0567889---------999999960797389935899998799983999998795999986999-877089---8-8999 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE--EEEEECCCC--CE---EEECCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 146889987402654431156899972503888--999970588--76---63123206899998888999999999999 Q gi|255764476|r 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNA--QT---MLTFVNVTDSVRAERALTEKNEALRKADE 567 (792) Q Consensus 495 ~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~~~~--~~~~pl~dg--~~---l~~~~DIT~~k~~E~aL~e~~eale~a~~ 567 (792) ..+..+...+..- .....+....++||+.++ ....|+.|. .. +.+.+|||++|++|++|+++ ++++ T Consensus 87 ~~~~~~~~~i~~~--~~~~~E~~n~rKDG~~~w~~~~i~pv~d~~G~~~~~~~i~~DITerk~~E~~L~qa-qkle---- 159 (538) T PRK13557 87 ATVADVRDAIAER--REIATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQA-QKME---- 159 (538) T ss_pred HHHHHHHHHHHCC--CCEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHH-HHHH---- T ss_conf 9999999999759--93687999987999999999899999989999999999883444999999999999-9999---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 9999999966663225899999999973577788-9-9899999999999999999999999999885149830002330 Q gi|255764476|r 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 (792) Q Consensus 568 lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~-l-~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~v 645 (792) .+.+|+++||||||||||+|+||+++|......+ . .++..+|++.|.++++++..||++||+|||. .+++.+++ T Consensus 160 alg~~~a~isHEirnPL~~I~G~~~lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr~----~~l~~~~~ 235 (538) T PRK13557 160 ALGQLTGGIAHDFNNLLQVMSGYLDVLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFARK----QKLDGRVV 235 (538) T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCEEE T ss_conf 99999988788762699999999999986401688899999999999999999999999999997582----76877177 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE----------- Q ss_conf 699999999999999998489689999569860899878999999999988677538886889999998----------- Q gi|255764476|r 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----------- 714 (792) Q Consensus 646 dl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~----------- 714 (792) |++++++++..+++. +..+++++.+++++++|.+.+|+.+|+|||.||++||+||+++||.|+|+++. T Consensus 236 ~l~~lv~~~~~l~~~-~~~~~i~l~~~~~~~l~~~~~D~~~l~qvl~NLl~NA~~a~~~gg~i~i~~~~~~~~~~~~~~~ 314 (538) T PRK13557 236 NLNGLVSGMGEMAER-TLGDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTVRTENVEITEHDLAMY 314 (538) T ss_pred CHHHHHHHHHHHHHH-HHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC T ss_conf 299999999999999-8529919999807988708755899999999989879986578975999998764154210012 Q ss_pred ----ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf ----7998999999788978977865414883762689888856637999999999619869999788994399999734 Q gi|255764476|r 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 715 ----~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) .+.+++|+|+|||+|||++.++|||+||||++..+ +||||||||||+||++|||+|+|+|++|+||||+++||. T Consensus 315 ~~~~~g~~v~i~V~DtG~GI~~e~~~rIFepFfttk~~~--~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v~lP~ 392 (538) T PRK13557 315 HQLPPGRYVSIAVTDTGSGMPPEILARVMEPFFTTKEEG--KGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPA 392 (538) T ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCEEECCCC--CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC T ss_conf 457888789999998689889899997725010422457--877724999999999879959999328987799999867 Q ss_pred CC Q ss_conf 79 Q gi|255764476|r 791 KE 792 (792) Q Consensus 791 ~e 792 (792) .+ T Consensus 393 ~~ 394 (538) T PRK13557 393 SE 394 (538) T ss_pred CC T ss_conf 87 No 6 >PRK11006 phoR phosphate regulon sensor protein; Provisional Probab=100.00 E-value=0 Score=508.09 Aligned_cols=332 Identities=21% Similarity=0.301 Sum_probs=280.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 99999999999999620343289968984886405888782898789438983889887776302561146889987402 Q gi|255764476|r 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 (792) Q Consensus 427 ~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 506 (792) +++..+++..++.++++++||.+++.+|+|.+||+++++|+||..++..+.+ +..+. ..|+....+.. T Consensus 91 ~~l~~~~~rfr~~~ealpDavvv~d~~g~I~~~N~aAe~l~G~~~~~~~G~~-I~~Li-------r~p~f~~~~~~---- 158 (431) T PRK11006 91 RELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLGLRWPEDNGQN-ILNLL-------RYPEFTQYLKT---- 158 (431) T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHCCCCHHHCCCC-HHHHH-------CCHHHHHHHHC---- T ss_conf 9999999999999964897699998999588356999998389983326997-78980-------88459999862---- Q ss_pred CCCCCCEEEEEEEECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 65443115689997250388899997058876631232068999988889999999999999999999966663225899 Q gi|255764476|r 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 (792) Q Consensus 507 ~~~~r~~~~~~~~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~ 586 (792) .. ......+...+|+.+++...|..+|+.++.++|||+.|++|+ +|.+|++|||||||||||+ T Consensus 159 ~~---~~~p~~~~~~~~~~le~~~~p~~~~~~llv~rDiT~~~~lE~--------------~R~dFvAnvSHELRTPLT~ 221 (431) T PRK11006 159 RD---FSRPLNLVLNNGRHLEIRVMPYTEGQLLMVARDVTQMHQLEG--------------ARRNFFANVSHELRTPLTV 221 (431) T ss_pred CC---CCCCEEEECCCCCEEEEEEEECCCCCEEEEEEECCHHHHHHH--------------HHHHHHHHCCHHHHHHHHH T ss_conf 66---557625543887479999977379958999985659999999--------------9999998620866177999 Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999997357778899899999999999999999999999999885149830002330699999999999999998489 Q gi|255764476|r 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 (792) Q Consensus 587 I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~ 666 (792) |.||+|+|.+... .++.+.+|++.|.+++.||..||+|+|++||+++|......+++|+..+++.+...... +..+. T Consensus 222 I~G~~ElL~~~~~--~~~~~~~~l~~i~~~~~Rm~~LI~dLL~lsrle~~~~~~~~~~vd~~~ll~~l~~~~~~-l~~~~ 298 (431) T PRK11006 222 LQGYLEMMEEQPL--EGPMREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVLEREAQT-LSQKK 298 (431) T ss_pred HHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHC T ss_conf 9999999857999--80999999999999999999999999999764258752136531399999999999999-98625 Q ss_pred CEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECC Q ss_conf 68999956986089987899999999998867753888688999999879989999997889789778654148837626 Q gi|255764476|r 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 (792) Q Consensus 667 i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~ 746 (792) ..+.+++++++ .+.+|+.+|+|||.||++||+||+|+|+.|.|++...++.+.|+|+|+|+|||++.++|||+||++.+ T Consensus 299 ~~i~~~~~~~~-~v~~D~~~L~qvl~NLi~NAikytp~g~~I~I~~~~~~~~~~i~V~D~G~GI~~e~~~riFerFyR~d 377 (431) T PRK11006 299 HTITFEVDDSL-KVLGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVD 377 (431) T ss_pred CCCCCCCCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECC T ss_conf 66655689982-79978999999999999989974799977999999949989999998387859899998626888288 Q ss_pred CC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 89--8888566379999999996198699997889943999997347 Q gi|255764476|r 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 747 ~~--~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) .+ .+.+||||||||||+||+.|||+|+|+|++|+||||+|+||.+ T Consensus 378 ~~rs~~~gGtGLGLaIvK~Ive~HgG~I~v~S~~g~Gt~F~~~lP~~ 424 (431) T PRK11006 378 KARSRQTGGSGLGLAIVKHALNHHDSRLEIESTVGKGTRFSFVLPER 424 (431) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCH T ss_conf 88879999554899999999998599899995599855999984865 No 7 >PRK11360 sensory histidine kinase AtoS; Provisional Probab=100.00 E-value=0 Score=497.61 Aligned_cols=328 Identities=20% Similarity=0.337 Sum_probs=274.5 Q ss_pred HHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 99996203432899689848864058887828987894389838898877763025611468899874026544311568 Q gi|255764476|r 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516 (792) Q Consensus 437 ~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~ 516 (792) ...++++.+||..+|.+|++.++||++++|+|++.+++.+++ +..+. .+++....+...+... ......+. T Consensus 264 e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~-~~~l~-------~~~~~~~~~~~~l~~~-~~~~~~~~ 334 (607) T PRK11360 264 ELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQP-YSMLF-------DNTQFYSPVLDTLEHG-TEHVALEI 334 (607) T ss_pred HHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC-HHHHC-------CCHHHHHHHHHHHHCC-CCCCCEEE T ss_conf 999861046699997999499983899998587978985967-99957-------9576779999998537-74212489 Q ss_pred EEEECCEEE-EEEEEEECCCC-----CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH Q ss_conf 999725038-88999970588-----7663123206899998888999999999999999--999996666322589999 Q gi|255764476|r 517 TLELLSDSV-LEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNII 588 (792) Q Consensus 517 ~~~~~dG~~-~~~~~~pl~dg-----~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~ 588 (792) .+...+|.. +.....|+.++ +.+++|+|||++|++|++|++ ++|+++ +|+++||||||||||+|. T Consensus 335 ~~~~~~~~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~-------~erlaalGe~~A~vaHElRnPLt~I~ 407 (607) T PRK11360 335 SFPGRDRTIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMAR-------AERLAALGELMAGVAHEIRNPLTAIR 407 (607) T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 96058834999999853576898588999999957789999999999-------99999999999998998715499999 Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCE Q ss_conf 99999735777889989999999999999999999999999988514983000233069999999999999999848968 Q gi|255764476|r 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 (792) Q Consensus 589 G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~ 668 (792) ||+|+|.+.. .++..++|++.|.+.++||.++|+|+|+|||.+.+ +.+++|+++++++++..+++.+.++++. T Consensus 408 g~~elL~~~~---~~~~~~~~l~~i~~e~~Rl~~li~~lL~~sr~~~~----~~~~v~l~~l~~~~~~~~~~~~~~~~i~ 480 (607) T PRK11360 408 GYVQILRQQT---SDPIHQEYLSVVLREVDSLNKVIQQLLEFSRPRHS----QWQQVSLNALVEEVLVLVQTAGVQARVD 480 (607) T ss_pred HHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCEECHHHHHHHHHHHHHHHHHHCCCE T ss_conf 9999986689---98799999999999999999999999985277888----8847869999999999999988867968 Q ss_pred EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCEECCC Q ss_conf 99995698608998789999999999886775388868899999987-99899999978897897786541488376268 Q gi|255764476|r 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 (792) Q Consensus 669 l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~-~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~ 747 (792) +..++++++|.+.+|+.+|+|||.||+.||+||+|+||+|++++... ++.+.|+|+|||+|||++.+++||+||||++. T Consensus 481 l~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~a~~~~g~I~i~~~~~~~~~v~i~V~D~G~GI~~e~~~~IFepF~ttk~ 560 (607) T PRK11360 481 FITELDNELPPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLELLKKIFDPFFTTKA 560 (607) T ss_pred EEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC T ss_conf 99981898876998889999999999999628628996799999993698799999986768698999645589754899 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 98888566379999999996198699997889943999997347 Q gi|255764476|r 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 748 ~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) +||||||||||+||+.|||+|+|+|.+|+||||+++||.. T Consensus 561 ----~GtGLGLaI~k~Ive~hgG~I~v~S~~g~GT~F~i~LPl~ 600 (607) T PRK11360 561 ----SGTGLGLALSQRIINAHQGDIRVASLPGYGTTFTLILPIN 600 (607) T ss_pred ----CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC T ss_conf ----9813379999999998899899996699986999998068 No 8 >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO).. Probab=100.00 E-value=0 Score=503.38 Aligned_cols=227 Identities=28% Similarity=0.537 Sum_probs=213.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC Q ss_conf 999999999999996666322589999999997357778899899999999999999999999999999885149--830 Q gi|255764476|r 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG--IMK 639 (792) Q Consensus 562 le~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG--~~~ 639 (792) +|+|||+||.|+|.||||||||||+|+|=++||.+. +|+..|+.|++.|..|++.|+.|.||||||||||+| .++ T Consensus 498 AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~---~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~ 574 (1052) T TIGR02956 498 AEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT---GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGGTHLS 574 (1052) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 999748876887413511320113689999750589---98888999999998622789999846754677610874653 Q ss_pred CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE Q ss_conf 00233069999999999999999848968999956986089-98789999999999886775388868899999987998 Q gi|255764476|r 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 (792) Q Consensus 640 l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v-~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~ 718 (792) +++.|||+..++.++..++..++..|+|+|.+++++++|.+ .||+.||+|||+||++||||||..|. |+|++...++. T Consensus 575 i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~Gs-v~l~~~l~~~~ 653 (1052) T TIGR02956 575 ISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRGS-VVLRVSLNDDS 653 (1052) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCCE-EEEEEEECCCC T ss_conf 45567788889999999999877403725674276542788753661344767654413200434526-99998855888 Q ss_pred ------EEEEEEECCCCCCHHHHHHHCCCCEECCC-CCCCCCCCHHHHHHHHHHHHCCCE---EEEEEECCCCEEEEEEE Q ss_conf ------99999978897897786541488376268-988885663799999999961986---99997889943999997 Q gi|255764476|r 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGH---VSISSSDEGVTTINCRI 788 (792) Q Consensus 719 ------v~i~V~D~G~GI~~e~~~riF~~F~~~~~-~~~~~GtGLGLsiv~~iVe~hgG~---I~v~S~~G~Gttf~v~l 788 (792) +.|.|.||||||+++.++.+|+||.+... .++.+|||||||||+++|++|||+ |+|+|++|+|+||.|+| T Consensus 654 ~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~GScF~F~l 733 (1052) T TIGR02956 654 SSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQGSCFWFTL 733 (1052) T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEC T ss_conf 98663478888624779987999854331012101373137765068999999997088876501666458750221242 Q ss_pred ECCC Q ss_conf 3479 Q gi|255764476|r 789 PSKE 792 (792) Q Consensus 789 P~~e 792 (792) |..+ T Consensus 734 pl~~ 737 (1052) T TIGR02956 734 PLAR 737 (1052) T ss_pred CCCC T ss_conf 3133 No 9 >PRK11466 hybrid sensory histidine kinase TorS; Provisional Probab=100.00 E-value=0 Score=488.48 Aligned_cols=229 Identities=27% Similarity=0.483 Sum_probs=214.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999996666322589999999997357778899899999999999999999999999999885149 Q gi|255764476|r 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 (792) Q Consensus 557 e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG 636 (792) ++++++|+||+.|++|+++||||||||||+|+||++||.+. ++++.|++|++.|.+|+++|+.+|||||||||||+| T Consensus 432 ~Ar~~AE~AnrAKS~FLA~MSHEIRTPLNgIlG~~eLL~~~---~l~~~qr~~l~~I~~s~~~LL~lInDILD~SkiEaG 508 (912) T PRK11466 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADN---PALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG 508 (912) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999871397677599999999998479---999899999999999999999999999999998189 Q ss_pred --CCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf --830002330699999999999999998489689999569860-89987899999999998867753888688999999 Q gi|255764476|r 637 --IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 (792) Q Consensus 637 --~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~ 713 (792) +++++..||++.++++++...+.+.+..+++++.+++++++| .+.+|+.||+||+.||++||+|||+.| .|.+++. T Consensus 509 ~~~l~l~~~pf~l~~ll~~v~~~~~~~a~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsNAiKFT~~G-~V~l~~~ 587 (912) T PRK11466 509 GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSNALRFTDEG-SIVLRSR 587 (912) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCC-EEEEEEE T ss_conf 981388611568999999999999999983797899972799986086358899999999999870618996-7999999 Q ss_pred EECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 879989999997889789778654148837626898888566379999999996198699997889943999997347 Q gi|255764476|r 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 714 ~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) ..++.+.|+|+|||+|||++.+++||+||++.+ ++++||||||+|||++|++|||+|+|+|+||+||+|+|+||.. T Consensus 588 ~~~~~l~~~V~DTGiGI~~e~~~~IF~~F~Q~~--~~~gGtGLGLaI~k~LvelMGG~I~V~S~~G~GS~F~~~LPl~ 663 (912) T PRK11466 588 TDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLR 663 (912) T ss_pred ECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECC T ss_conf 869789999850899999999998844761588--9989926689999999998799799971699872899999777 No 10 >PRK13560 hypothetical protein; Provisional Probab=100.00 E-value=0 Score=440.35 Aligned_cols=661 Identities=15% Similarity=0.157 Sum_probs=431.3 Q ss_pred HHHHHHH-HHHHHCCCCEEEEE--CCC--CCCCEEECCCHHHCCCCCC----HHHHHHHHHCCCHHHHHH-------HHH Q ss_conf 9999999-99860699789998--179--9700141341232189832----023444321189467898-------999 Q gi|255764476|r 66 CDQLSKY-HSLLTENNCLTIVW--DGK--DETPEIIGQLHQRIDIPQT----DTDLLSFENWLKFHHYIK-------LSK 129 (792) Q Consensus 66 ~~~~~r~-~all~~~~~~~~~w--~~~--~~~~~~~~~~~~~~g~~~~----~~~~l~f~~wl~p~~a~~-------l~~ 129 (792) +...+.+ +-+..+-|..++-+ ++. -..|.++............ +...+ -...+|++... ..+ T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 140 (807) T PRK13560 63 QDCREQCERNLKANIPGGMFLFALDGDGTFSFPSLLDANGELAAIAKHDLMADKGLL--AMLIGGDDGDFFFANPFRSAE 140 (807) T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCHHHHHHCHHHHCCCHHHH--HHEECCCCCCEECCCHHHHHH T ss_conf 999999998787279870799997588740435676523368861804332633256--531154666701234676799 Q ss_pred HHHH-HHHCC-CEEEEEEECCCCEEEEEEEEEE--CCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999-98539-6589999868972999830455--754899874010689999999999999999999999998516800 Q gi|255764476|r 130 ATEK-LRKEG-QSFDLVAETQNDCAIKIEGRVS--GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL 205 (792) Q Consensus 130 ai~~-l~~~g-~~f~l~~~t~~g~~i~~~Gr~~--g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~ 205 (792) ++++ |+..- +.|+......+|+||.+--|+- ...-. -+.|...+|+|.|+.+.+|++++..++.++|++|.| T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~DITERKraE~rl~~ql~flq~LlDnipdp 216 (807) T PRK13560 141 TIAMALQSDDWQEEEGHFRCGDGRFIDCCLRFERHAHADD----QVDGFAEDITERKRAEERIDEALHFLQQLLDNIADP 216 (807) T ss_pred HHHHHCCCCCHHHHHCCCCCCCCEEEEECCCHHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9987527886587516666699505663054210897345----555677876777789999999999999998548874 Q ss_pred EEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHH-H----HHHCCCCC-EEEEEEEEEECCEEEEEEE Q ss_conf 5898159928985257898736778775661015853389678999-9----86125787-0345788865690789999 Q gi|255764476|r 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR-M----ISSSALEK-NFCETVSTLEHGNNKSYKI 279 (792) Q Consensus 206 vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~-~----~~~~~~~~-~~~~~~~~~~~G~rr~~~v 279 (792) ||.+|.+|+|.+||+||++++ |+..++.++.....+.+..... . ......+. ...+......+|..++.++ T Consensus 217 vF~kD~~G~ylgcN~afe~~~---G~~re~i~G~ti~Dl~p~e~ad~y~~~d~~~l~~~~~~~~E~~v~~~DG~~~~~~v 293 (807) T PRK13560 217 AFWKDEDAKVFGCNDAACLAC---GFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQNKDGRTRPVDV 293 (807) T ss_pred EEEECCCCCEEEECHHHHHHC---CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEE T ss_conf 699779951896209999880---99999956861012781556899987508864188755755203779985757999 Q ss_pred E--EEECC------CCEEEEEEEHHHHHHHHHHHHHHHH----HHHHCCCCEEEECCCCEEEEE-CHHHHHHHCCCHHHH Q ss_conf 9--76328------9529998304589998878899999----984308959998489808985-368885509997896 Q gi|255764476|r 280 V--RVLNS------FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH-NRSFVELWEIDLAFL 346 (792) Q Consensus 280 ~--~~~~~------~G~~Gia~DITErk~ae~aLrr~~e----~Ld~l~~~v~ifd~~~rl~~~-N~a~~~l~gl~~~~l 346 (792) + ..|.. .|.+|+..||||||++|++|+.+++ .+++++.+|.++|+++++.|+ |++..+|+|++.+.+ T Consensus 294 ~~nka~~~d~~g~~~GlvGv~~DITeRK~aEe~LresEer~R~i~E~a~~gI~~~D~~g~i~~~~n~aae~m~G~s~eE~ 373 (807) T PRK13560 294 IFNHAEFDDKENHCAGLVGAITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAERMLGWSAAEV 373 (807) T ss_pred EEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHCCCHHHH T ss_conf 98622333878866568888761567788999999989999999873665347862676157612616787626876886 Q ss_pred HCCCCHH---HHHHHHHHCCCCCCCCCHHHHH-------------HHHHHHHHCCCCCCEEEECCCCCEEEEEEEECC-- Q ss_conf 0499879---9999897547776646578899-------------999987624676502688789818999973569-- Q gi|255764476|r 347 ATNPSND---ELLEFLRSANKLPEQLNWKTWK-------------ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-- 408 (792) Q Consensus 347 ~~~p~~~---~~ld~lr~~~~lpe~~d~~~w~-------------~~~~~~~~~~~~~~~~w~l~DGr~l~v~~~~~p-- 408 (792) .+.|-+. +..+.+ -..+|+.|. .......+.....+..++.+||..+.+...+.| T Consensus 374 lg~~lw~~~pe~~~e~-------~~~~~~~~~pdgr~~~~~~c~~a~~~r~g~~~~g~E~~~~RkDGt~~~~~~~~~pL~ 446 (807) T PRK13560 374 MGKPLPGMDPELNEEF-------WCGDFQEWYPDGRPMAFDACPMAKTIKGGKIFDGQEVLIEREDDGPADCSAYAEPLH 446 (807) T ss_pred CCCCCCCCCHHHHHHH-------CCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCEEEE T ss_conf 0774335683441333-------134065516665634310123667761378778863799906996577886130225 Q ss_pred --CC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCEEEEECHHHHHHHCCCHHHHCCCC-CHH Q ss_conf --98---68999459579999999999999999999962034328996-898488640588878289878943898-388 Q gi|255764476|r 409 --RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGT-HIR 481 (792) Q Consensus 409 --~G---g~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~-~dgr~~~~N~a~~~l~g~~~~~l~~~~-~~~ 481 (792) +| |.+.++.||||||+.|+.++.+ +..+++.+..+..+. ..|....+|....++|||+++++..+. .+. T Consensus 447 D~dG~~~gal~i~~DITERKqAEeaLr~s----n~iLEnSp~il~~~~~~~gw~ve~vs~~v~~fGYt~eE~isg~~~~~ 522 (807) T PRK13560 447 DADGNIIGAIALLVDITERKQVEEQLLLA----NLIVENSPLVLFRWKAEEGWPVELVSKNITQFGYEPDEFISGKRMFA 522 (807) T ss_pred CCCCCEEEEEEHHHCCHHHHHHHHHHHHH----HHHHHCCCCEEEEEECCCCCCEEEECCHHHHHCCCHHHHCCCCEEHH T ss_conf 67888533110011242778899999998----88875297404787515786237523214550888788424231012 Q ss_pred HHHH-HHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEECCCC--CE---EEECCCCHHHHHHHH Q ss_conf 9887-7763025611468899874026544311568999725038--88999970588--76---631232068999988 Q gi|255764476|r 482 NIAA-TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNA--QT---MLTFVNVTDSVRAER 553 (792) Q Consensus 482 ~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~pl~dg--~~---l~~~~DIT~~k~~E~ 553 (792) .+.. .+. ...+..+...+ .....+...+.++.++||++ ++..+.|..|. .+ ..+..|||++|++|+ T Consensus 523 ~lvhPeDr-----~~v~~~l~~~~-~~G~~~f~~eyRi~~kdGsvrWI~~~~~~irDe~G~V~~~~giv~DIT~~k~aee 596 (807) T PRK13560 523 AIIHPADL-----EQVAAEVAEFA-AQGVDRFEQEYRILGKGGAVCWIDDQSAAERDEEGQISHFEGIVIDISERKHAEE 596 (807) T ss_pred CCCCHHHH-----HHHHHHHHHHH-CCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHH T ss_conf 05797888-----88999999874-1575522016888769996899970135611788875444446743528888999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH Q ss_conf 889999999999999999999966663225899999999973577788998999999999999999999--999999998 Q gi|255764476|r 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN--LVNDILDLA 631 (792) Q Consensus 554 aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~--li~diLdls 631 (792) +|+ ++...|.-++.-|.|-.+|.|..|.++..|-.... -++..+ +....+..|+.. +|.+.| . T Consensus 597 ~l~-------asL~EKE~LLkEIHHRVKNNLQiIsSLL~LQar~~---~d~ear---~aL~esq~RI~SmAlVHe~L--y 661 (807) T PRK13560 597 KIK-------AALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKL---HDEEAK---CAFAESQDRICAMALAHEKL--Y 661 (807) T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHH---HHHHHHHHHHHHHHHHHHHH--H T ss_conf 999-------99998899999877675203999999999887655---999999---99999999999999999998--5 Q ss_pred HHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHC--CCEEEEEECCCCCEEEEC-HHHHHHHHHHHHHHHHHCCCC---C Q ss_conf 8514983000233069999999999999999848--968999956986089987-899999999998867753888---6 Q gi|255764476|r 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGSFVAD-RQRLLQIFSKILSNAMDFSSK---G 705 (792) Q Consensus 632 ~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~--~i~l~~~~~~~~~~v~~D-~~rL~QVl~NLl~NAik~~~~---g 705 (792) + .-+...||+.+.+.+....+....... .|.+.+++++ ..+..| +.-|.-|+.+|++||+||+-+ . T Consensus 662 ~------S~dl~~Id~~~yi~~L~~~L~~s~~~~~~~I~l~vd~d~--~~L~~d~AiPLgLIlnELVtNAlKHAF~~~~~ 733 (807) T PRK13560 662 Q------SEDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADD--GCLDIDKAIPCGLIISELLSNALKHAFPDGAA 733 (807) T ss_pred C------CCCCCEECHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC--CEECHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 6------999765729999999999999973789863899997367--05658887679999999999989860899998 Q ss_pred CEEEEEEEEEC-CEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEE Q ss_conf 88999999879-98999999788978977865414883762689888856637999999999619869999788994399 Q gi|255764476|r 706 STVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 (792) Q Consensus 706 g~I~i~~~~~~-~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf 784 (792) |.|+|+..+.+ +.+.++|+|||+|||++ |++- .+.+|||.||+.+|+.-+|+|.++|. .||+| T Consensus 734 G~I~Isl~~~~~~~v~L~V~DnG~GlP~~-----fd~~---------~s~sLGL~LV~~Lv~QL~G~l~i~s~--~Gt~f 797 (807) T PRK13560 734 GNIKVEIREQGDGMVNLCVADDGIGLPAG-----FDFR---------AAETLGLQLVCALVKQLDGEIALDSR--GGARF 797 (807) T ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCCC-----CCCC---------CCCCCHHHHHHHHHHHCCCEEEEECC--CCEEE T ss_conf 27999999867998999998798158999-----8978---------89997699999999974989999859--98699 Q ss_pred EEEEECC Q ss_conf 9997347 Q gi|255764476|r 785 NCRIPSK 791 (792) Q Consensus 785 ~v~lP~~ 791 (792) +++||.. T Consensus 798 ~I~FPl~ 804 (807) T PRK13560 798 NIRFPMS 804 (807) T ss_pred EEEEECC T ss_conf 9997189 No 11 >PRK09303 adaptive-response sensory kinase; Validated Probab=100.00 E-value=0 Score=476.00 Aligned_cols=304 Identities=18% Similarity=0.321 Sum_probs=252.2 Q ss_pred ECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCE Q ss_conf 40588878289878943898388988777630256114688998740265443115689997250388899997058876 Q gi|255764476|r 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538 (792) Q Consensus 459 ~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~~~~~~~~pl~dg~~ 538 (792) .-|+..++...+...+.|...++.+..|. | .|...... .+...... .+ . .+.+. T Consensus 68 a~p~l~k~~p~p~q~lag~~~~~~l~~w~-p------rw~~~~~~-~~~~~~~~---------~~-~--------~~~~~ 121 (378) T PRK09303 68 ATPALIKISPEPRQVLAGSNIFQQLKNWW-P------RWQQEGAT-SGLGLSLR---------PS-E--------SDVGR 121 (378) T ss_pred CCCHHHHCCCCCHHHCCCCCHHHHHHHHH-H------HHHHHHHH-HCCCCCCC---------CC-C--------CCHHH T ss_conf 36135640898343206886889988762-7------88888876-32478877---------76-5--------53556 Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 63123206899998888999999999999999999996666322589999999997357778899899999999999999 Q gi|255764476|r 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 (792) Q Consensus 539 l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~ 618 (792) -..+.++.|.+- .|++.||+|.++.++|++|+++||||||||||+|+||+++|.....++.++++.+++..+...+. T Consensus 122 ~~~~~~l~d~~~---~Lrqe~E~L~e~~r~K~~Fla~vSHELRTPLTaI~g~~e~L~~~~~~~~~~~~~~~l~~l~~~~~ 198 (378) T PRK09303 122 TQELLQLSDELF---VLRQENETLLEQLKFKDRLLAMLAHDLRTPLTAASLAVETLELGQIDPSEELSPALIEQLQDQAR 198 (378) T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 599998788999---99998999999999999999973676153199999999998642579741667999999999999 Q ss_pred H----HHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHH Q ss_conf 9----999999999998851498300023306999999999999999984896899995698608998789999999999 Q gi|255764476|r 619 I----LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 (792) Q Consensus 619 ~----l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NL 694 (792) + |..||+|+||++++++|.++++++++|+.+++.+++..+++.+..+++++.+++++++|.|.+|+.+|+|||.|| T Consensus 199 ~~~~~L~~LI~DLLd~sr~e~g~l~l~~~~~dL~~lv~evi~~~~~~a~~k~i~l~~dip~dlp~V~aD~~rL~QVl~NL 278 (378) T PRK09303 199 RQLEEIERLITDLLEVGRTRWEALQFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQRRIRQVLLNL 278 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHHHHHHH T ss_conf 99999999999999998875388631468876999999999998989983897899976899972876899999999999 Q ss_pred HHHHHHCCCCCCEEEEEE-EEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEE Q ss_conf 886775388868899999-9879989999997889789778654148837626898888566379999999996198699 Q gi|255764476|r 695 LSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 (792) Q Consensus 695 l~NAik~~~~gg~I~i~~-~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~ 773 (792) |+||+||+|+||+|+|++ .+.++.+.|+|+|||+|||++.+++||+||++.+.+.+.+||||||||||+||++|||+|| T Consensus 279 L~NAiKyT~~gG~I~I~~~~~~~~~V~isV~DtG~GIp~e~~~rIFe~F~R~~~s~~~~GtGLGLaIvk~IVe~HgG~I~ 358 (378) T PRK09303 279 LDNAIKYTPEGGTITLTMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVEVHYGQIW 358 (378) T ss_pred HHHHHHHCCCCCEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCEEHHHHHHHHHHHHCCCEEE T ss_conf 99999858999869999998139989999998078889899987563634456899988312799999999998799799 Q ss_pred EEEECCCCEEEEEEEECC Q ss_conf 997889943999997347 Q gi|255764476|r 774 ISSSDEGVTTINCRIPSK 791 (792) Q Consensus 774 v~S~~G~Gttf~v~lP~~ 791 (792) |+|+||+||||+|+||.- T Consensus 359 V~S~~g~GS~Ft~tLPv~ 376 (378) T PRK09303 359 VDSEPGQGSCFHFTLPVY 376 (378) T ss_pred EEECCCCCEEEEEEEECC T ss_conf 994399835999998247 No 12 >PRK11107 hybrid sensory histidine kinase BarA; Provisional Probab=100.00 E-value=0 Score=481.32 Aligned_cols=233 Identities=28% Similarity=0.476 Sum_probs=212.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999999999966663225899999999973577788998999999999999999999999999998851 Q gi|255764476|r 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 (792) Q Consensus 555 L~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~ 634 (792) |..+++++++|+|.|++|++|||||||||||+|+||+++|... ++++.|++|++.|.+++++|+.||||||||||+| T Consensus 279 l~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~---~l~~~q~~~l~~i~~s~~~Ll~lIndiLD~SkiE 355 (920) T PRK11107 279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT---PLTPTQRDYLQTIERSANNLLAIINDILDFSKLE 355 (920) T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999966486542199999999998569---9999999999999999999999999999999984 Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 498300023306999999999999999984896899995698608-9987899999999998867753888688999999 Q gi|255764476|r 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 (792) Q Consensus 635 aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~ 713 (792) +|+++++..|||+.+++++++..+.+.+..|++.|.+++++++|. +.||+.||+|||.||++||+|||+.|. |.+++. T Consensus 356 ag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKfT~~G~-I~v~v~ 434 (920) T PRK11107 356 AGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGN-IDILVE 434 (920) T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCC-EEEEEE T ss_conf 5983674016789999999999999999973987999978999730653899999999999999997188993-799999 Q ss_pred EE--C-C--EEEEEEEECCCCCCHHHHHHHCCCCEECCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE Q ss_conf 87--9-9--8999999788978977865414883762689--88885663799999999961986999978899439999 Q gi|255764476|r 714 RD--N-G--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 (792) Q Consensus 714 ~~--~-~--~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~--~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v 786 (792) .. . + .+.|+|+|||+|||++.+++||+||++.+.+ ++++||||||+|||++|++|||+|+|+|++|+||||+| T Consensus 435 ~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v~S~~g~GS~F~F 514 (920) T PRK11107 435 LRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514 (920) T ss_pred EEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEE T ss_conf 99647984899999999705869999997854201567654456798774299999999980991799954899748999 Q ss_pred EEECC Q ss_conf 97347 Q gi|255764476|r 787 RIPSK 791 (792) Q Consensus 787 ~lP~~ 791 (792) ++|.. T Consensus 515 tlpl~ 519 (920) T PRK11107 515 HLPLD 519 (920) T ss_pred EEECC T ss_conf 99804 No 13 >PRK11073 glnL nitrogen regulation protein NR(II); Provisional Probab=100.00 E-value=0 Score=429.15 Aligned_cols=327 Identities=20% Similarity=0.330 Sum_probs=260.1 Q ss_pred HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE Q ss_conf 99999620343289968984886405888782898789438983889887776302561146889987402654431156 Q gi|255764476|r 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515 (792) Q Consensus 436 q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~ 515 (792) |...||++++||.+++.+|++.++|+++++++|++.+++.+++ +.++.... .. ....+...+..... ..... T Consensus 9 ~~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~-~~~l~~~~----~~--~~~~~~~~~~~~~~-~~~~~ 80 (348) T PRK11073 9 AGQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTP-LPELLSYF----SL--NIELMQESLQAGQG-FTDNE 80 (348) T ss_pred HHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCC-HHHHHCCC----CC--CHHHHHHHHHCCCC-CCCCE T ss_conf 9999986607964998979701283999999785989985996-89984665----30--18999999973897-41323 Q ss_pred EEEEECCEE--EEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899972503--888999970588766312320689999888899999999999999999999666632258999999999 Q gi|255764476|r 516 GTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 (792) Q Consensus 516 ~~~~~~dG~--~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~l 593 (792) ..+ ..||. ++.+...|+.++..++.+.|||++|+.++++.+.++. ..+.+|++++||||||||++|.|++++ T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~di~~~k~l~~e~~~~~~~-----~~~~e~~~~iaHelrnPL~~I~g~~~l 154 (348) T PRK11073 81 VTL-VIDGRSHILSLTAQRLPEGMILLEMAPMDNQRRLSQEQLQHAQQ-----VAARDLVRGLAHEIKNPLGGLRGAAQL 154 (348) T ss_pred EEE-EECCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 999-98996999999999825868999999627999999999999999-----999999984018747857999999999 Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 73577788998999999999999999999999999998851498300023306999999999999999984896899995 Q gi|255764476|r 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 (792) Q Consensus 594 L~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~ 673 (792) |.... -++...+|++.|.++++++.++|+++|++++... ..+.++..+++++..++.... .+++.+..+. T Consensus 155 l~~~~---~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~~i~i~~~~ 224 (348) T PRK11073 155 LSKAL---PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HITESIHKVAERVVQLVSLEL-PDNVRLIRDY 224 (348) T ss_pred HHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEE T ss_conf 97417---9989999999999999999999999864412688------775479999999999999856-5780999960 Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEEC----------CEEEEEEEECCCCCCHHHHHHHCCCC Q ss_conf 6986089987899999999998867753-888688999999879----------98999999788978977865414883 Q gi|255764476|r 674 DGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDN----------GDFIFSVKNNGSSIPEDMCKSVFNRF 742 (792) Q Consensus 674 ~~~~~~v~~D~~rL~QVl~NLl~NAik~-~~~gg~I~i~~~~~~----------~~v~i~V~D~G~GI~~e~~~riF~~F 742 (792) ++.+|.+.+|+.+|+|||.|||+||+|| ++.+|.|.+.+.... ..+.|+|+|||+||||+.+++||+|| T Consensus 225 ~~~~~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~pf 304 (348) T PRK11073 225 DPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPM 304 (348) T ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCC T ss_conf 78887264468788999999999999983669977999996433322145323304899999908878989999737783 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 7626898888566379999999996198699997889943999997347 Q gi|255764476|r 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 743 ~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) ++++. .||||||+|||+||+.|||+|+|+|.||+ |+|+++||.+ T Consensus 305 ~ttk~----~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl~ 348 (348) T PRK11073 305 VSGRE----GGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 348 (348) T ss_pred CCCCC----CCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEEC T ss_conf 67998----98177899999999986998999982891-9999999639 No 14 >PRK10490 sensor protein KdpD; Provisional Probab=100.00 E-value=0 Score=437.98 Aligned_cols=231 Identities=21% Similarity=0.404 Sum_probs=213.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999999666632258999999999735777889989999999999999999999999999988514983 Q gi|255764476|r 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 (792) Q Consensus 559 ~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~ 638 (792) .+.+.+.+|+|+.|++.||||||||||+|+|++++|..... ..+++..+++..|.+.+.+|.+||+|+||+||+++|.+ T Consensus 654 a~~~aE~ErLRsalLssVSHDLRTPLtsI~G~a~~L~~~~~-~~~~~~~~~~~~I~~e~~rL~rLV~nLLdmsRle~G~l 732 (895) T PRK10490 654 ARLASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLA-SEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGF 732 (895) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 88877777899999986034357869999999999854777-88288999999999999999999999999987636997 Q ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE Q ss_conf 00023306999999999999999984896899995698608998789999999999886775388868899999987998 Q gi|255764476|r 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 (792) Q Consensus 639 ~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~ 718 (792) .++.+++++.+++.+++..+++.+..+.|+ +++++++|.+.+|+.+|.|||.|||.||+||+|+|+.|.|++...++. T Consensus 733 ~l~~~~~~l~evv~~al~~~~~~~~~~~i~--v~~~~~~~~v~~D~~lleQVL~NLl~NAiKytp~~~~I~v~a~~~~~~ 810 (895) T PRK10490 733 NLKKEWLTLEEVVGSALQMLEPGLSQHPIN--LSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGEN 810 (895) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEE--EEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE T ss_conf 664642069999999999998661269679--995698706987899999999999999998589997099999997999 Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 99999978897897786541488376268988885663799999999961986999978899439999973479 Q gi|255764476|r 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 719 v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e 792 (792) +.|+|+|+|+|||++.+++||++|++....+..+|+||||||||+||+.|||+|+++|.||+||+|+|+||.++ T Consensus 811 v~i~V~D~G~GIp~~~~~~IFe~F~R~~~~~~~~GtGLGLaI~k~IveAhGG~I~~~s~~ggGa~F~~~LPl~~ 884 (895) T PRK10490 811 LQLDVWDNGPGIPPGQEQLIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAENRPEGGACFRVTLPQEK 884 (895) T ss_pred EEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCC T ss_conf 99999980898797999975568712899999997447899999999987998999956998069999832999 No 15 >PRK10364 sensor protein ZraS; Provisional Probab=100.00 E-value=0 Score=418.59 Aligned_cols=234 Identities=21% Similarity=0.387 Sum_probs=214.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 32068999988889999999999999999999966663225899999999973577788998999999999999999999 Q gi|255764476|r 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 (792) Q Consensus 543 ~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~ 622 (792) +++++++++|++|+. +|+|.+.. +++++|||||||||++|.||+++|.+.. +.+++.++|++.|.+.++|+.. T Consensus 217 ~~~~~R~~Lq~el~r-~EKLAaLG----~LAAgVAHEIRNPLtsI~G~AqlL~~~~--~~~~e~~e~~~iI~~E~~RL~~ 289 (455) T PRK10364 217 RYLRSRQLLQDEMKR-KEKLVALG----HLAAGVAHEIRNPLSSIKGLAKYFAERA--PAGGEAHQLAQVMAKEADRLNR 289 (455) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHH T ss_conf 778999999999999-98999999----9999989988564999999999986769--9985799999999999999999 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999885149830002330699999999999999998489689999569860899878999999999988677538 Q gi|255764476|r 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 (792) Q Consensus 623 li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~ 702 (792) +|+++|+|++.. +++.+++|+++++++++.+++..+..++|.+.++.++++|.+.+|+.+|.|||.||+.||++++ T Consensus 290 iI~~LL~faRp~----~~~~~~vdL~~li~~~l~l~~~~a~~k~I~l~~~~~~~lp~I~~D~~~L~QVl~NLl~NAi~A~ 365 (455) T PRK10364 290 VVSELLELVKPT----HLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAI 365 (455) T ss_pred HHHHHHHHHCCC----CCCCCEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHC T ss_conf 999999872899----8988488499999999999986886489099997388887598889999999999999999975 Q ss_pred CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCE Q ss_conf 88688999999879989999997889789778654148837626898888566379999999996198699997889943 Q gi|255764476|r 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 (792) Q Consensus 703 ~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gt 782 (792) ++||+|+|++...++.+.|+|+|||+|||+|.+++|||||||+|. .|||||||||++||+.|||+|+++|.+|+|| T Consensus 366 ~~gg~I~I~~~~~~~~V~I~V~DnG~GIp~E~l~rIFePFfTTK~----~GTGLGLaIv~~IVe~HgG~I~v~S~~G~GT 441 (455) T PRK10364 366 GQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA----EGTGLGLAVVHNIVEQHGGTIQVASQEGKGA 441 (455) T ss_pred CCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEEECCCCCE T ss_conf 899779999998599899999976999797898786589764898----9702889999999998899799995599987 Q ss_pred EEEEEEECC Q ss_conf 999997347 Q gi|255764476|r 783 TINCRIPSK 791 (792) Q Consensus 783 tf~v~lP~~ 791 (792) +|+++||.. T Consensus 442 ~FtI~LPl~ 450 (455) T PRK10364 442 TFTLWLPVN 450 (455) T ss_pred EEEEEEECC T ss_conf 999998278 No 16 >PRK13837 two-component VirA-like sensor kinase; Provisional Probab=100.00 E-value=0 Score=417.96 Aligned_cols=238 Identities=17% Similarity=0.302 Sum_probs=207.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 3206899998888999999999999999--99999666632258999999999735777889989999999999999999 Q gi|255764476|r 543 VNVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 (792) Q Consensus 543 ~DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l 620 (792) .+.-+++|.|.+=++..+.|++|.||.+ .+.++|+||+||||++|+||++|+.... +.+++.++|++.|.++++|. T Consensus 425 ~~~~~~~r~etER~~LE~qL~qAQKmEAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l--~~~~~~~~~L~~I~~aa~Ra 502 (831) T PRK13837 425 CHAIERRRLETERDALERRLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKL--RRHSRARRHIDEIISSGDRA 502 (831) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH T ss_conf 8799998879999999999999999999999998999987008999999999986206--99847789999999999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHH Q ss_conf 99999999998851498300023306999999999999999984896899995698608998789999999999886775 Q gi|255764476|r 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 (792) Q Consensus 621 ~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik 700 (792) ..||++||+|||- .+.+++++|+++++++++.+++..+ .++|++.++++++++.|.+|+.+|+|||+||+.||.+ T Consensus 503 ~~Lv~qLL~FSR~----~~~~~~~vdl~~lv~e~~~llr~~l-~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~d 577 (831) T PRK13837 503 RLIIDQILTFGRK----GERRTKPFSLSELVTEIAPLLRVSL-PPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQ 577 (831) T ss_pred HHHHHHHHHHHCC----CCCCCCEECHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHH T ss_conf 9999999998589----9997717749999999999999875-8986999971898853888799999999999999999 Q ss_pred CCCCCCEEEEEEEE---------------ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHH Q ss_conf 38886889999998---------------799899999978897897786541488376268988885663799999999 Q gi|255764476|r 701 FSSKGSTVILKAAR---------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 (792) Q Consensus 701 ~~~~gg~I~i~~~~---------------~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iV 765 (792) .+++||+|+|++.. .|++++|+|+|||+|||++.++||||||||||. +|||||||+|++|| T Consensus 578 AM~~gG~l~I~~~~~~~~~~~~~~~~~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFFTTK~----~GTGLGLAvV~gIV 653 (831) T PRK13837 578 AMDENGRVDIRLSRVDLRKPKVLAHGTAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFFTTRA----RGTGLGLATVHGIV 653 (831) T ss_pred HCCCCCEEEEEEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHH T ss_conf 76799869999855533632321157789989899999867999898999660489867889----98874699999999 Q ss_pred HHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 96198699997889943999997347 Q gi|255764476|r 766 NLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 766 e~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) +.|||.|.|+|+||+||+|+|+||.. T Consensus 654 ~~hgG~I~V~S~pG~GTtF~v~LP~~ 679 (831) T PRK13837 654 SAHAGYIDVQSTVGRGTRFDVYLPPS 679 (831) T ss_pred HHCCCEEEEECCCCCCEEEEEEEECC T ss_conf 98698699972699971899983179 No 17 >PRK11100 sensory histidine kinase CreC; Provisional Probab=100.00 E-value=0 Score=401.63 Aligned_cols=217 Identities=29% Similarity=0.488 Sum_probs=201.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH Q ss_conf 99999966663225899999999973577788998999999999999999999999999998851498300023306999 Q gi|255764476|r 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 (792) Q Consensus 570 ~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~ 649 (792) .+|++++|||||||||+|.|++|+|++.. ..+.+++|++.|.+.++||..||+|+|++++++++...++.+++|+.+ T Consensus 257 e~fva~vSHELRTPLt~I~g~~ElL~~~~---~~e~~~~~l~~I~~e~~RL~~LV~~LL~larle~~~~~~~~~~vdl~~ 333 (475) T PRK11100 257 EQYVQTLTHELKSPLAAIRGAAELLQEDP---PPEDRQRFTGNILAQSARLQQLIDRLLELARLEQRQELEVLEPVALAA 333 (475) T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHH T ss_conf 99998540865117999999999973899---989999999999999999999999999998751588767554875999 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCC Q ss_conf 99999999999998489689999569860899878999999999988677538886889999998799899999978897 Q gi|255764476|r 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 (792) Q Consensus 650 ~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~G 729 (792) ++++++..+++.+..+++++.++.++ ..+.+|+.+|+||+.||+.||+||+|+||+|+|++...++.+.|+|+|+|+| T Consensus 334 ll~~~~~~~~~~~~~~~i~l~~~~~~--~~v~~D~~~L~qvl~NLl~NAikys~~~g~I~I~~~~~~~~~~i~V~D~G~G 411 (475) T PRK11100 334 LLEELVEAREAQAAAKGITLRLRPDD--AAVLGDPFLLRQALGNLLDNAIDFTPEGGTITLSAERDGEQVALSVEDSGPG 411 (475) T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCC T ss_conf 99999999999998689299995787--6697089999999999999999738999779999999699999999984888 Q ss_pred CCHHHHHHHCCCCEECCC-CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 897786541488376268-98888566379999999996198699997889943999997347 Q gi|255764476|r 730 IPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 730 I~~e~~~riF~~F~~~~~-~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) ||++.+++||||||+.+. .+++.|+||||||||.||++|||+|+|+|.+|+||+|+++||.. T Consensus 412 Ip~e~l~~IFerFys~~r~~~~~~GsGLGLsIvk~Iv~~HgG~I~v~s~~~~Gt~f~i~LP~~ 474 (475) T PRK11100 412 IPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475) T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCC T ss_conf 788999886167803777999988630799999999998599899996699807999993899 No 18 >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Probab=100.00 E-value=0 Score=398.00 Aligned_cols=229 Identities=20% Similarity=0.406 Sum_probs=210.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999999666632258999999999735777889989999999999999999999999999988514983 Q gi|255764476|r 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 (792) Q Consensus 559 ~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~ 638 (792) .+.|+...+++.+|++++|||||||||.|.|++++|.+.. .+...+++..|.....+|..+|+|++++++.+.|.+ T Consensus 231 a~~Le~~~~~rr~f~a~iSHELRTPLt~i~g~le~l~d~~----~~~~~e~l~~i~~e~~rl~~Lv~dLl~ls~~~~~~~ 306 (467) T PRK10549 231 ASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGV----RKFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGAL 306 (467) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999999888875158999999999987165----545799999999999999999999999987545675 Q ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE Q ss_conf 00023306999999999999999984896899995698608998789999999999886775388868899999987998 Q gi|255764476|r 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 (792) Q Consensus 639 ~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~ 718 (792) .++.+++|+.+++++++..+++.+..+++++.+++++.+ .+.+|+.+|.|||.||++||+||+++||.|.|++...++. T Consensus 307 ~~~~~~vdl~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~-~v~~D~~~L~qvl~NLl~NAikyt~~~g~I~I~~~~~~~~ 385 (467) T PRK10549 307 AYQKTPVDLVPLLEVAGGAFRERFASRGLTLQFSLPDSA-TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQHDKT 385 (467) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE T ss_conf 446733338999999999999999845958999759884-6997799999999999999998489998799999997999 Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCEECCCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 99999978897897786541488376268988--885663799999999961986999978899439999973479 Q gi|255764476|r 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 719 v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~--~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e 792 (792) +.|+|+|+|+|||++.+++|||||++.+.+.. .+|+||||||||+||+.|||+|+++|.+|+||+|+++||.++ T Consensus 386 v~i~V~D~G~GI~~e~l~~IFe~Fyr~d~sr~r~~gGsGLGLaIvk~Iv~~HgG~I~v~s~~~~G~~f~i~LPl~~ 461 (467) T PRK10549 386 LRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 461 (467) T ss_pred EEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCC T ss_conf 9999998188879899998668987388888899996128999999999983998999967998579999952799 No 19 >PRK09835 sensor kinase CusS; Provisional Probab=100.00 E-value=0 Score=385.76 Aligned_cols=229 Identities=21% Similarity=0.344 Sum_probs=204.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999999666632258999999999735777889989999999999999999999999999988514983 Q gi|255764476|r 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 (792) Q Consensus 559 ~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~ 638 (792) .+.|+.+.+.+.+|++++|||||||||+|.|+++++.... ...+...+++..+.+..+||.++|+++|++||.+.+.. T Consensus 252 ~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~--~~~~~~~~~l~~~~~e~~rl~~lv~~lL~lar~e~~~~ 329 (482) T PRK09835 252 IERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQS--RSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQL 329 (482) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999999988987189999999999985389--98699999999999999999999999999877435887 Q ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE Q ss_conf 00023306999999999999999984896899995698608998789999999999886775388868899999987998 Q gi|255764476|r 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 (792) Q Consensus 639 ~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~ 718 (792) ..+.+++|+.+++.++++.++..+..+++++.+..+ ...|.+|+.+|+|+|.|||+||+||+|+|+.|+|++...++. T Consensus 330 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~v~~d~~~l~~~l~NLl~NAikys~~g~~i~i~~~~~~~~ 407 (482) T PRK09835 330 IPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVGD--PCQVAGDPLMLRRALSNLLSNALRYTPEGEAIVVRCQTVDHQ 407 (482) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC--CEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE T ss_conf 666734569999999999999999868928998278--708998799999999999999998489998699999982998 Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 9999997889789778654148837626898--8885663799999999961986999978899439999973479 Q gi|255764476|r 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 719 v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e 792 (792) +.|+|+|+|+|||++.+++|||||++.+.+. +.+|+||||||||+||++|||+|+|+|. ++||+|+++||.-| T Consensus 408 v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f~i~lPr~~ 482 (482) T PRK09835 408 VQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVISLPRLE 482 (482) T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEEECCC T ss_conf 9999996587889899987667975189888899994648999999999982998999963-99189999930789 No 20 >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Probab=100.00 E-value=0 Score=391.10 Aligned_cols=349 Identities=21% Similarity=0.332 Sum_probs=269.9 Q ss_pred EEEECCHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHC Q ss_conf 9994595799999999999-999999999620343289968984886405888782898789438983889887776302 Q gi|255764476|r 413 IWMFENLTVQVDLETKYNT-LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491 (792) Q Consensus 413 ~~~~~DITE~~~le~~~~~-l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~ 491 (792) .--|.|.|++.+....... .-+.....+-.+.+||.-.+..|++++.|....++.|.+.+.+.+.+..+-+. . T Consensus 89 a~~fn~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~------i 162 (459) T COG5002 89 ADSFNDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSILELLK------I 162 (459) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCCHHHHHC------C T ss_conf 9999789999999987678888889989998707657645778689935079998486778771653788857------7 Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEEEEECC---EEE--EEEEEEECCCC---CEEEECCCCHHHHHHHHHHHHHHHHHH Q ss_conf 5611468899874026544311568999725---038--88999970588---766312320689999888899999999 Q gi|255764476|r 492 NESDGWDLFAAIITSFDDERKSLQGTLELLS---DSV--LEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNEALR 563 (792) Q Consensus 492 ~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~d---G~~--~~~~~~pl~dg---~~l~~~~DIT~~k~~E~aL~e~~eale 563 (792) .+.. .+...+..- .+. -+...| +.+ +.++.+.-..| +.+....|+||+.++|++.| T Consensus 163 ~d~y---~~~dL~e~~----~s~--lld~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErR------- 226 (459) T COG5002 163 EDTY---TFEDLVEKN----DSL--LLDSSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERR------- 226 (459) T ss_pred CCCE---EHHHHHHCC----CCE--EEEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHH------- T ss_conf 5430---288887259----828--986047886379999888885114664406998731438788899999------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 99999999999966663225899999999973577788998999999999999999999999999998851498300023 Q gi|255764476|r 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 (792) Q Consensus 564 ~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~ 643 (792) +|++|||||||||||+..+|.|-|.++...+. +-...++..-+..++||.+||||+|.+||++.++..|+.+ T Consensus 227 -------efvanvSHElRTPltsmksyLEALe~ga~~d~-eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e 298 (459) T COG5002 227 -------EFVANVSHELRTPLTSMKSYLEALEEGAWEDK-EIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKE 298 (459) T ss_pred -------HHHHHCCHHHCCCHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf -------99886140314736789999999746874471-2326899874788999999999998772576325666578 Q ss_pred EECHHHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEE Q ss_conf 3069999999999999999848968-999956986089987899999999998867753888688999999879989999 Q gi|255764476|r 644 TIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 (792) Q Consensus 644 ~vdl~~~i~~~~~~~~~~~~~~~i~-l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~ 722 (792) .+|+...+......+.-.+.+..+. +.-++|...-.+..|+..+-||+.|+++||+||+|+||+|+++....+..+.++ T Consensus 299 ~inft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iS 378 (459) T COG5002 299 WINFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEIS 378 (459) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEE T ss_conf 88748899999999999875677889996088886489967068999999998777524899973999996307589999 Q ss_pred EEECCCCCCHHHHHHHCCCCEECCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 99788978977865414883762689--8888566379999999996198699997889943999997347 Q gi|255764476|r 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 723 V~D~G~GI~~e~~~riF~~F~~~~~~--~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) |+|.|.|||.+.+++||++|++.... ++.+||||||+|+|.||+.|||.||++|..|+||||+++||.+ T Consensus 379 I~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~ 449 (459) T COG5002 379 ISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYS 449 (459) T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCC T ss_conf 74688899840689999988522366540378776129999999997098577760458861799995466 No 21 >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Probab=100.00 E-value=0 Score=379.62 Aligned_cols=227 Identities=25% Similarity=0.479 Sum_probs=209.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 9999999999999666632258999999999735777889989-999999999999999999999999988514983000 Q gi|255764476|r 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 (792) Q Consensus 563 e~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~-q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~ 641 (792) .+.+++++.|++.+|||||||||+|+|.++.|..... .++++ +.+.+..|.+.+++|.++|+|+||++|+++|.+.++ T Consensus 654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~-~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~ 732 (890) T COG2205 654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGE-ALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLK 732 (890) T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 9999999999987410246728988614888642340-159376999999999999999999998776777713786414 Q ss_pred EEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEE Q ss_conf 23306999999999999999984896899995698608998789999999999886775388868899999987998999 Q gi|255764476|r 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 (792) Q Consensus 642 ~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i 721 (792) .++..+.+++.+++..++....++. +.++++++++.+.+|+.-+.|||+|||.||+||+|++++|.|.+.+..+.++| T Consensus 733 ~~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~ 810 (890) T COG2205 733 LDWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERENVVF 810 (890) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCE--EEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEE T ss_conf 4520399999999998663047835--89955888716764788999999999987874289997699999982456999 Q ss_pred EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 99978897897786541488376268988885663799999999961986999978899439999973479 Q gi|255764476|r 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e 792 (792) +|.|+|+|||++.+++|||+|++....+...|+|||||||++||+.|||+|++++.++.|++|+++||..+ T Consensus 811 ~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~ 881 (890) T COG2205 811 SVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEE 881 (890) T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC T ss_conf 99718999885678876465414888778887662299999999974886898776999358999940688 No 22 >PRK10337 sensor protein QseC; Provisional Probab=100.00 E-value=0 Score=365.88 Aligned_cols=222 Identities=23% Similarity=0.295 Sum_probs=197.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99999999999999996666322589999999997357778899899999999999999999999999999885149830 Q gi|255764476|r 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 (792) Q Consensus 560 eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~ 639 (792) +.++++-.....|++++|||||||||+|.|++|++.... +..+..++++..|.++.+++..+|+++|.|||+|++... T Consensus 225 ~rl~~~~~~~r~F~adaAHELRTPLt~i~~~~e~~~~~~--~~~~~~~~~l~~i~~~~~rl~~lv~~LL~Lar~d~~~~~ 302 (446) T PRK10337 225 ARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSD--DDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNL 302 (446) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999999999788875168999999999984279--998999999999999999999999999998775446565 Q ss_pred CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEE Q ss_conf 00233069999999999999999848968999956986089987899999999998867753888688999999879989 Q gi|255764476|r 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 (792) Q Consensus 640 l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v 719 (792) ...++||+.+++.+++..+.+.+..+++++.+++++..+.+.+|+..|+|++.||++||+||+|+|+.|.|+.... T Consensus 303 ~~~~~v~l~~l~~~~v~~~~~~a~~~~i~l~~~~~~~~~~~~~d~~ll~~~l~NLl~NAikytp~g~~I~v~~~~~---- 378 (446) T PRK10337 303 QDVAEIPLEDLLQSAVMDIYHTAQQAKIDVRLTLNAHGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNAR---- 378 (446) T ss_pred CCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC---- T ss_conf 6781752999999999999999997597799962887706716899999999999999997489997699999807---- Q ss_pred EEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE Q ss_conf 999997889789778654148837626898888566379999999996198699997889943999997 Q gi|255764476|r 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 (792) Q Consensus 720 ~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~l 788 (792) .++|+|+|||||++.++||||||++.. ..+..|+|||||||++|+++|||+|+++|.|+.|++|+|+| T Consensus 379 ~l~V~D~G~GIp~e~~~~iFeRFyR~~-~~~~~GsGLGLaIV~~I~~~hgG~i~l~~~~~GG~~~~vt~ 446 (446) T PRK10337 379 NFTVRDNGPGVTPEALARIGERFYRPP-GQTATGSGLGLSIVQRIAKLHGMNVSFGNAEEGGFEAKVSW 446 (446) T ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEC T ss_conf 799997699999999987427970699-99999826749999999998199899997898927999969 No 23 >PRK09470 cpxA two-component sensor protein; Provisional Probab=100.00 E-value=0 Score=360.32 Aligned_cols=233 Identities=25% Similarity=0.340 Sum_probs=200.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99888899999999999999999999666632258999999999735777889989999999999999999999999999 Q gi|255764476|r 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 (792) Q Consensus 550 ~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLd 629 (792) +..+++-.-.+.|+++.+.+.+|++++|||||||||.|.++++++.... ++ .++++.|.+.+++|..+|+++|+ T Consensus 224 ~La~~fN~M~~~L~~~~~~q~~f~advSHELRTPLt~i~~~~~ll~~~~-~~-----~~~l~~i~~e~~rl~~li~~lL~ 297 (461) T PRK09470 224 AAGASFNQMVTALERMMSSQQRLLSDISHELRTPLTRLQLATALLRRRQ-GE-----SKELERIETEAQRLDSMINDLLV 297 (461) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999998645553278999999999864044-78-----59999999999999999999999 Q ss_pred HHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 98851498300023306999999999999999984896899995698608998789999999999886775388868899 Q gi|255764476|r 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 (792) Q Consensus 630 ls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~ 709 (792) |||.+.+. .+..+++|+.++++++++..+..+..+++.+.+..+++...|.+|+.+|.||+.||+.||+||++. .|+ T Consensus 298 lsr~~~~~-~~~~e~~~l~~l~~~v~~~~~~~a~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~NAikys~~--~i~ 374 (461) T PRK09470 298 LSRNQVKN-HLVRETIKANSLWSEVLEDAAFEAEQMGKSLTVNQPPGPWPINGNPNALESALENIVRNALRYSHT--KIE 374 (461) T ss_pred HHHHCCCC-CCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCC--CEE T ss_conf 97620546-555651539999999999999999975976999727875489978999999999999999974899--589 Q ss_pred EEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE Q ss_conf 9999879989999997889789778654148837626898--88856637999999999619869999788994399999 Q gi|255764476|r 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 (792) Q Consensus 710 i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~ 787 (792) |++...++.+.|+|+|+|+|||++.+++||+||++.+.+. +.+|+||||||||++|+.|||+|+++|.++.||+|+++ T Consensus 375 v~~~~~~~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~~~~i~ 454 (461) T PRK09470 375 VGFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIW 454 (461) T ss_pred EEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEE T ss_conf 99999999999999977999899999876279722898888999971388999999999829989999779985699999 Q ss_pred EECC Q ss_conf 7347 Q gi|255764476|r 788 IPSK 791 (792) Q Consensus 788 lP~~ 791 (792) ||.- T Consensus 455 LPl~ 458 (461) T PRK09470 455 LPLY 458 (461) T ss_pred EECC T ss_conf 6588 No 24 >PRK10604 sensor protein RstB; Provisional Probab=100.00 E-value=0 Score=356.51 Aligned_cols=220 Identities=22% Similarity=0.297 Sum_probs=190.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99999999999999996666322589999999997357778899899999999999999999999999999885149830 Q gi|255764476|r 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 (792) Q Consensus 560 eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~ 639 (792) +.+++..+.+.+|+++||||||||||.|.+..+|+.... +... ..+.+...+|..||+++|++||++.+..+ T Consensus 203 ~~l~~~~~~~r~f~a~vSHELRTPLt~i~~~lell~~~~-----~~e~---~~l~~~i~~l~~lv~~lL~larl~~~~~~ 274 (433) T PRK10604 203 DNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS-----AAES---QALNRDIGQLEALIEELLTYARLDRPQNE 274 (433) T ss_pred HHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCC-----HHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999987402443168999999999704998-----5789---99999999999999999999763689787 Q ss_pred CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEE Q ss_conf 00233069999999999999999848968999956986089987899999999998867753888688999999879989 Q gi|255764476|r 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 (792) Q Consensus 640 l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v 719 (792) ++.+++|+.+++.++++.++.....+++.+. .+.....+.+|+.+|+|++.||+.||+||+ ++.|.|++...++.+ T Consensus 275 l~~~~~dl~~~i~~~~~~~~~~~~~~~i~l~--~~~~~~~~~~D~~~l~~~l~NLl~NA~kys--~~~v~v~~~~~~~~~ 350 (433) T PRK10604 275 LHLSEPDLPAWLSTHLADIQAVTPEKTVRLK--TPHQGDYGALDMRLMERVLDNLLNNALRYS--HSTVETSLLLDGDQA 350 (433) T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--CCCCCCEEEECHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCEE T ss_conf 8770236999999999999976559967997--179886698789999999999999998718--997899999999999 Q ss_pred EEEEEECCCCCCHHHHHHHCCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 999997889789778654148837626898--888566379999999996198699997889943999997347 Q gi|255764476|r 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 720 ~i~V~D~G~GI~~e~~~riF~~F~~~~~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) .|+|+|+|+|||++.+++||+||++.+++. +.+|+||||||||+||+.|||+|+|+|.+|+||+|+++||.- T Consensus 351 ~i~V~D~G~GI~~e~~~~IFepFyR~d~sr~~~~gG~GLGLaIvk~Iv~~hgG~i~v~s~~~gGa~f~i~LP~~ 424 (433) T PRK10604 351 TLIVEDDGPGIAPEERERIFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDTSELGGARFSFSWPVW 424 (433) T ss_pred EEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCC T ss_conf 99999778788989999865794528888899999613889999999998199899996699847999997799 No 25 >PRK10755 sensor protein BasS/PmrB; Provisional Probab=100.00 E-value=0 Score=355.13 Aligned_cols=227 Identities=23% Similarity=0.348 Sum_probs=193.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88899999999999999999999666632258999999999735777889989999999999999999999999999988 Q gi|255764476|r 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 (792) Q Consensus 553 ~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~ 632 (792) +++-+-.+.|+.+.+.+.+|++++|||||||||+|.|++|+|..... .+...+.+..+++..+|+++|++++ T Consensus 127 ~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~--------~~~~~~~~~i~rl~~li~~LL~Lar 198 (355) T PRK10755 127 SALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHH--------IDVAPLIARLDQMMHSVSQLLQLAR 198 (355) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999997577740389999999999737575--------3199999999999999999999985 Q ss_pred HHCCCCCCEEEEEC-HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 51498300023306-99999999999999998489689999569860899878999999999988677538886889999 Q gi|255764476|r 633 VDAGIMKLNYSTIV-LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 (792) Q Consensus 633 i~aG~~~l~~~~vd-l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~ 711 (792) ++.+....+.++++ +.+++....+.+...+..++..+.+..++....|.||+.+|+||+.||++||+||+|+|+.|+|. T Consensus 199 ~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~g~~I~I~ 278 (355) T PRK10755 199 AGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPEGSNITIK 278 (355) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 88864345442132599999999999999999759959996588771899689999999999999899748999769999 Q ss_pred EEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC-CCCEEEEEEEEC Q ss_conf 9987998999999788978977865414883762689888856637999999999619869999788-994399999734 Q gi|255764476|r 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790 (792) Q Consensus 712 ~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~-G~Gttf~v~lP~ 790 (792) .... +.+.++|+|+|+|||++.+++||+||++.+. +++|+||||||||+||++|||+|+++|+| |.||+|+|+||. T Consensus 279 l~~~-~~~~i~V~D~G~GI~~e~~~~iFerFyR~d~--~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~ggGt~~~v~LPk 355 (355) T PRK10755 279 LQED-GGAVMAVEDEGPGIDESKCGELSKAFVRMDS--RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLKK 355 (355) T ss_pred EEEC-CCEEEEEEECCCCCCHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC T ss_conf 9977-9889999987999897999885588613899--999875899999999999199899998798987899999479 No 26 >PRK11086 sensory histidine kinase DcuS; Provisional Probab=100.00 E-value=0 Score=347.76 Aligned_cols=306 Identities=16% Similarity=0.248 Sum_probs=216.4 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH--HHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC Q ss_conf 9999999996203432899689848864058887828987--89438983889887776302561146889987402654 Q gi|255764476|r 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509 (792) Q Consensus 432 l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 509 (792) +.+.+.+.|+++.|||..++.+|++.++|+++.+|++... +...+.+ +.++. ... .+...+.... T Consensus 219 l~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~-~~~~~-------~~~----~l~~vl~~~~- 285 (541) T PRK11086 219 LFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTD-VHSWS-------PVS----RLKEVLRTGT- 285 (541) T ss_pred HHHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCC-HHHHC-------CCH----HHHHHHHCCC- T ss_conf 9999999985300169997589879998499998743358874312551-77727-------545----5999984488- Q ss_pred CCCEEEEEEEECCEEEEEEEEEECCC-C---CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 43115689997250388899997058-8---7663123206899998888999999999999999999996666322589 Q gi|255764476|r 510 ERKSLQGTLELLSDSVLEYSIIPLPN-A---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 (792) Q Consensus 510 ~r~~~~~~~~~~dG~~~~~~~~pl~d-g---~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt 585 (792) ....+....+|+.+.....|+.. | +.+++|+|+||.++++++|..- +...+++...|||++|||+ T Consensus 286 ---~~~d~e~~~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L~~v--------~~~~e~Lra~sHE~~n~L~ 354 (541) T PRK11086 286 ---PRRDEEININGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRLDGV--------VNYADALRAQSHEFMNKLH 354 (541) T ss_pred ---CCCEEEEEECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH T ss_conf ---53107999899899999777654890689999984427899999999999--------9999998761166640579 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999735777889989999999999999999999999999988514983000233069999999999999999848 Q gi|255764476|r 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 (792) Q Consensus 586 ~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~ 665 (792) .|.|+.++-+. ++..+|+ .+-+......++.+++.-+ . +.+...+..-..++.++ T Consensus 355 ~I~Gll~l~~~-------d~~~~~i---~~~~~~~~~~~~~l~~~i~-----------~----p~la~~Llgk~~~a~E~ 409 (541) T PRK11086 355 VILGLLHLKSY-------DQLEDYI---LKTANNYQEEIGSLLGKIK-----------S----PVIAGFLLGKISRAREL 409 (541) T ss_pred HHHHHHHHCHH-------HHHHHHH---HHHHHHHHHHHHHHHHHCC-----------C----HHHHHHHHHHHHHHHHC T ss_conf 99888864308-------9999999---9999999999999998611-----------6----88899999889999966 Q ss_pred CCEEEEEECCCCCEEEECHH---HHHHHHHHHHHHHHHCC--CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCC Q ss_conf 96899995698608998789---99999999988677538--88688999999879989999997889789778654148 Q gi|255764476|r 666 NIRIKVISDGKLGSFVADRQ---RLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 (792) Q Consensus 666 ~i~l~~~~~~~~~~v~~D~~---rL~QVl~NLl~NAik~~--~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~ 740 (792) ++.|.++.+..+|.. .|+. +|.||+.||+.||++++ +++++|.+++...++.+.|+|+|||+||||+.+++||+ T Consensus 410 gi~L~i~~~~~l~~~-~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~~~~~l~i~V~D~G~GI~~e~~~~IFe 488 (541) T PRK11086 410 GITLIISEDSQLPDS-DDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHYRHGWLHIEVSDDGPGIAPEEIEAIFD 488 (541) T ss_pred CCEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC T ss_conf 985997067767788-8646665799999999999999731689967999999889989999997798859779988717 Q ss_pred CCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 837626898888566379999999996198699997889943999997347 Q gi|255764476|r 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 741 ~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) ||||+| .+|+||||||||++|+.|||+|+|+|++|+||+|+|+||.+ T Consensus 489 rg~StK----~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~ 535 (541) T PRK11086 489 KGYSTK----GSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWD 535 (541) T ss_pred CCCCCC----CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCC T ss_conf 987418----99911039999999998599899996699937999996068 No 27 >PRK09467 envZ osmolarity sensor protein; Provisional Probab=100.00 E-value=0 Score=342.27 Aligned_cols=227 Identities=21% Similarity=0.332 Sum_probs=189.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99988889999999999999999999966663225899999999973577788998999999999999999999999999 Q gi|255764476|r 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 (792) Q Consensus 549 k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diL 628 (792) .++-++.-+-.+.+++..+.+..|+++||||||||||.|.+++++|... +....+.|.+..++|..+|+++| T Consensus 211 ~~l~~aFN~M~~~l~~~~~~r~~~la~vSHeLRTPLT~irl~~e~l~~~--------~~~~~~~i~~~i~~m~~li~~~L 282 (437) T PRK09467 211 RSVTRAFNQMSAGIKQLEDDRALLMAGVSHDLRTPLTRIRLATEMMSEE--------DGYLAESINKDIEECNAIIEQFI 282 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999753444327899999998746753--------18999999999999999999999 Q ss_pred HHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 99885149830002330699999999999999998489689999569860899878999999999988677538886889 Q gi|255764476|r 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 (792) Q Consensus 629 dls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I 708 (792) |+++.+. ....+++|+++++++++... ...+..+.+++++..+.+.+|+.+|+|+|.||+.||+||+ ++.| T Consensus 283 ~~~r~~~---~~~~~~~dl~~l~~~~~~~~----~~~~~~i~~~~~~~~~~v~~d~~~l~r~l~NLi~NA~ky~--~~~i 353 (437) T PRK09467 283 DYLRTDQ---EMPMEMADLNALLGEVIAAE----SGYEREIETALYPGPIEVPMNPIAIKRALANLVVNAARYG--NGWI 353 (437) T ss_pred HHHHHCC---CCCCCCCCHHHHHHHHHHHH----HCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHCC--CCEE T ss_conf 9986215---56675115999999999987----5549838996288764898579999999999999887607--9839 Q ss_pred EEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE Q ss_conf 99999879989999997889789778654148837626898888566379999999996198699997889943999997 Q gi|255764476|r 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 (792) Q Consensus 709 ~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~l 788 (792) .|++...++.+.|+|.|+|+|||++.+++||+||++.+.+.+.+|+||||||||+||+.|||+|.+++.|+.|++|+++| T Consensus 354 ~V~~~~~~~~~~i~V~D~GpGI~~e~l~~if~pF~R~d~sR~~~GsGLGLaIv~~Iv~~HgG~i~l~~~~~gGl~~~i~l 433 (437) T PRK09467 354 KVSSGTEGNRAWFQVEDNGPGIPEEQIKHLFQPFTRGDSARGSSGTGLGLAIVKRIVDQHQGKVELGNREEGGLSARAWL 433 (437) T ss_pred EEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEE T ss_conf 99999868999999997599999899987616852188899999772889999999998699899997799945999997 Q ss_pred ECCC Q ss_conf 3479 Q gi|255764476|r 789 PSKE 792 (792) Q Consensus 789 P~~e 792 (792) |.+. T Consensus 434 Pl~~ 437 (437) T PRK09467 434 PLPV 437 (437) T ss_pred CCCC T ss_conf 1579 No 28 >PRK10815 sensor protein PhoQ; Provisional Probab=100.00 E-value=0 Score=340.64 Aligned_cols=221 Identities=17% Similarity=0.271 Sum_probs=194.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 99999999999999666632258999999999735777889989999999999999999999999999988514983000 Q gi|255764476|r 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 (792) Q Consensus 562 le~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~ 641 (792) ++.+-....+|++++||||||||+.|.|++++|..+. .+..+. ...+.+..+||..+|+++|++++++++...+. T Consensus 259 l~~~~~rqr~F~adaSHELRTPLa~l~~~le~L~~~~---~~~~~~--~~~~le~i~Rl~~li~~lL~~a~~~~~~~~~~ 333 (484) T PRK10815 259 ERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRTEK---MSVSDA--EPVMLEQISRISQQIGYYLHRASMRGEGTLLS 333 (484) T ss_pred HHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCC---CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999999999985443643456999999999974699---887899--99999999999999999999987038986302 Q ss_pred EEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEE Q ss_conf 23306999999999999999984896899995698608998789999999999886775388868899999987998999 Q gi|255764476|r 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 (792) Q Consensus 642 ~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i 721 (792) .+.+++..+++++...+...+..+++.+.+++++++ .+.||+..|.|++.||+.||+||++++ |.|++...++.+.+ T Consensus 334 ~e~~~l~~ll~~l~~~l~~~~~~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldNAikys~~~--v~I~~~~~~~~~~I 410 (484) T PRK10815 334 RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDNACKYCLEF--VEISARQTDEHLHI 410 (484) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCEEEE T ss_conf 555669999999999999999964977999648760-795578999999999999999728886--79999996999999 Q ss_pred EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 99978897897786541488376268988885663799999999961986999978899439999973479 Q gi|255764476|r 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e 792 (792) +|+|+|||||++.+++||+||++.... +.|+|||||||+.||+.|||+|+++|.|++||+|+|+||..+ T Consensus 411 ~V~D~GpGIp~e~~~~IFeRF~R~d~~--r~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG~~f~I~F~~~~ 479 (484) T PRK10815 411 VVEDDGPGIPESKRELIFDRGQRVDTL--RPGQGVGLAVAREITEQYEGKIVASESPLGGARMEVIFGRQH 479 (484) T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCC T ss_conf 999739999989998624688779999--998576799999999988998999956999248999973877 No 29 >TIGR01386 cztS_silS_copS heavy metal sensor kinase; InterPro: IPR006290 Members of this family contain a sensor histidine kinase domain (IPR003661 from INTERPRO) and a domain found in bacterial signal proteins (IPR003660 from INTERPRO). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. ; GO: 0000155 two-component sensor activity, 0016775 phosphotransferase activity nitrogenous group as acceptor, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception. Probab=100.00 E-value=0 Score=343.40 Aligned_cols=222 Identities=28% Similarity=0.454 Sum_probs=197.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999996666322589999999997-357778899899999999999---99999999999999988514 Q gi|255764476|r 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISA---SSTILLNLVNDILDLATVDA 635 (792) Q Consensus 560 eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL-~~~~~g~l~~~q~e~~~~I~~---s~~~l~~li~diLdls~i~a 635 (792) +.||.+=+--++|-+.++||||||||+.+|-+|.. ..+.. +.||-+.|.+ .=+||.++|+|+|=|+|.|. T Consensus 252 ~RLEd~f~rLs~FSaDlAHElRTPltNL~~~tQVaLS~~R~------~~eY~e~l~snlEEl~RL~rMv~DMLFLAraD~ 325 (483) T TIGR01386 252 DRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSRPRS------GEEYREVLESNLEELERLSRMVEDMLFLARADN 325 (483) T ss_pred HHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHEEECCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88999999997317145666401254456650020056889------889999998618999999999989998998523 Q ss_pred CCCCCEEEEECHHHHHH-HHHHHHHHHHHHCC--CEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 98300023306999999-99999999998489--6899995698608998789999999999886775388868899999 Q gi|255764476|r 636 GIMKLNYSTIVLNDLLN-EVKQSIATKMHENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 (792) Q Consensus 636 G~~~l~~~~vdl~~~i~-~~~~~~~~~~~~~~--i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~ 712 (792) |.+.++++.+||.+=++ .+.+.+.+.+.+++ +.|.+.- .++.+.||+.-++.+|.|||+||++|||+||.|+|++ T Consensus 326 ~~~~~~~~~ldL~ae~~l~~~~~fE~lAee~~Piv~l~v~G--~P~~~~gD~~lfrRA~sNLLsNA~rhtp~g~~I~v~~ 403 (483) T TIGR01386 326 GRLALEREELDLAAELALKVAEYFEPLAEERGPIVSLRVEG--EPAEVRGDALLFRRALSNLLSNALRHTPAGSTIDVRV 403 (483) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC--CCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 45677787512788887888877420276788668999832--4205602478889999999999986089988589999 Q ss_pred EEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC--C-CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE Q ss_conf 987998999999788978977865414883762689--8-8885663799999999961986999978899439999973 Q gi|255764476|r 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 (792) Q Consensus 713 ~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~--~-~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP 789 (792) .+..+.+.++|+|+|+||||+.++||||+||+.+.. . ...||||||||||+||+.|||++.|+|.+++-|+|.+.|| T Consensus 404 ~~~~d~~~~~v~N~G~~Ip~e~L~rLFdRFYR~D~aR~~G~~~g~GLGLAIV~SI~~~HGG~~~aeS~~~~~t~F~l~fp 483 (483) T TIGR01386 404 ERRADEVRVSVENTGDGIPPEHLSRLFDRFYRVDPARSNGSQEGTGLGLAIVRSIMEAHGGRAEAESEADGKTRFKLRFP 483 (483) T ss_pred EECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECC T ss_conf 61477568998358799985235655530026763332766456760489999999823986899864892489876339 No 30 >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Probab=100.00 E-value=4.2e-45 Score=327.00 Aligned_cols=327 Identities=21% Similarity=0.361 Sum_probs=257.1 Q ss_pred HHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 99996203432899689848864058887828987894389838898877763025611468899874026544311568 Q gi|255764476|r 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516 (792) Q Consensus 437 ~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~ 516 (792) ...||++..+|.+.+.+|++.|.|++++.+++.+...|.+.+ +..+...-.++..-- ........++.+. T Consensus 10 ~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~-l~~l~~~gs~ll~ll---~q~~~~~~~~~~~------ 79 (363) T COG3852 10 GAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTR-LSELLPFGSLLLSLL---DQVLERGQPVTEY------ 79 (363) T ss_pred HHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCC-HHHHCCCCCHHHHHH---HHHHHHCCCCCCC------ T ss_conf 768745578569982778289608889999997788882487-788717772889999---8999835885101------ Q ss_pred EEEE-CCE--EEEEEEEEECC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9997-250--38889999705--887663123206899998888999999999999999999996666322589999999 Q gi|255764476|r 517 TLEL-LSD--SVLEYSIIPLP--NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 (792) Q Consensus 517 ~~~~-~dG--~~~~~~~~pl~--dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a 591 (792) ++.. .+| .++++...|++ +|..++.|.-+....+..+++.++ .+.+.....+.+.+|||+|||.+|.|-+ T Consensus 80 ~v~l~~~g~~~~v~~~v~~v~~~~G~vlle~~~~~~~~ridre~~q~-----a~~~a~~~L~r~LAHEIKNPL~GiRGAA 154 (363) T COG3852 80 EVTLVILGRSHIVDLTVAPVPEEPGSVLLEFHPRDMQRRLDREQTQH-----AQQRAVKGLVRGLAHEIKNPLGGIRGAA 154 (363) T ss_pred EEEEEECCCCCEEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 02442078652378998622689974899953257776766999988-----8888999999877887228531014499 Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 99735777889989999999999999999999999999988514983000233069999999999999999848968999 Q gi|255764476|r 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 (792) Q Consensus 592 ~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~ 671 (792) |||+...- ++..++|.+.|.+.++|+.+||+.+.-|+- ..+.+..|+++..+++.+..++..-+ ..+|++.- T Consensus 155 QLLe~~lp---d~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~VLerV~~lv~~e~-~~~i~l~r 226 (363) T COG3852 155 QLLERALP---DEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHEVLERVRALVEAEF-ADNVRLIR 226 (363) T ss_pred HHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEE T ss_conf 99974589---867789999999999999999999875087----89855354319999999999985436-77558850 Q ss_pred EECCCCCEEEECHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEE----------ECCEEEEEEEECCCCCCHHHHHH Q ss_conf 95698608998789999999999886775388----86889999998----------79989999997889789778654 Q gi|255764476|r 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS----KGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMCKS 737 (792) Q Consensus 672 ~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~----~gg~I~i~~~~----------~~~~v~i~V~D~G~GI~~e~~~r 737 (792) +++|++|.+.+|+.||.|||.||+.||+.... .+|+|.++.+- .--.+.+.|.|||||||++.+++ T Consensus 227 dYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~ 306 (363) T COG3852 227 DYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDH 306 (363) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCCCEEEEEEEEEEECCCCCCCHHHHHH T ss_conf 27998853236989999999999999999716778778569997224258871674246631169861899998678643 Q ss_pred HCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 148837626898888566379999999996198699997889943999997347 Q gi|255764476|r 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 738 iF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) +|.||.|+ +..||||||+|+..||..|||.|+++|.||+ |+|.+.+|.. T Consensus 307 lF~P~Vs~----r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~ 355 (363) T COG3852 307 LFYPMVSG----REGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIR 355 (363) T ss_pred CCCCCCCC----CCCCCCCCHHHHHHHHHHCCCEEEEECCCCC-EEEEEEEECC T ss_conf 00230206----8898661489999989852978987426894-5899986335 No 31 >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Probab=100.00 E-value=1.4e-45 Score=328.96 Aligned_cols=239 Identities=20% Similarity=0.382 Sum_probs=219.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 206899998888999999999999999--9999966663225899999999----9735777889989999999999999 Q gi|255764476|r 544 NVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTD----LLKTSKLGSLNSKQSQYVEYISASS 617 (792) Q Consensus 544 DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~G~a~----lL~~~~~g~l~~~q~e~~~~I~~s~ 617 (792) .|.++.+.|.+|+...+.|-+|+|+.- ++.+.+|||||+||++|..|++ ||+.+. .+..++.+..|..-. T Consensus 357 EIaer~~ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr----~e~a~~Nl~~I~~Lt 432 (603) T COG4191 357 EIAEREQAEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARLLLERGR----TEEARENLERISALT 432 (603) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHH T ss_conf 9998887899999878999987778998888888788743708999867778999987588----677776799999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHH Q ss_conf 99999999999998851498300023306999999999999999984896899995698608998789999999999886 Q gi|255764476|r 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 (792) Q Consensus 618 ~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~N 697 (792) +||..|..++-.|++-..+ ..+++.+.++|++++.++.++++..++++..+.++..+.|.+++.||+|||.|||+| T Consensus 433 eRma~It~~Lk~FArk~~~----a~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~N 508 (603) T COG4191 433 ERMAAITAHLKSFARKSRD----AAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQN 508 (603) T ss_pred HHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHHH T ss_conf 9998899999998336766----667765799999999998876413676265048987755641322099999999998 Q ss_pred HHHCC--CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 77538--8868899999987998999999788978977865414883762689888856637999999999619869999 Q gi|255764476|r 698 AMDFS--SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 (792) Q Consensus 698 Aik~~--~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~ 775 (792) |++.+ ++.+.|.|.+.++++.++++|+||||||+||.+.++|+||||+|+.++ |.||||+||+.|++.+||++.|. T Consensus 509 ALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~--GLGLGLaIS~~i~~d~GGsL~v~ 586 (603) T COG4191 509 ALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGK--GLGLGLAISQNIARDLGGSLEVA 586 (603) T ss_pred HHHHHCCCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHCCEEEEE T ss_conf 9998458878716999871598699998269999897899861377503676667--75602898998999818807940 Q ss_pred EECCCCEEEEEEEECCC Q ss_conf 78899439999973479 Q gi|255764476|r 776 SSDEGVTTINCRIPSKE 792 (792) Q Consensus 776 S~~G~Gttf~v~lP~~e 792 (792) +.|+.||.|++.||..+ T Consensus 587 n~~~~Ga~F~i~L~~a~ 603 (603) T COG4191 587 NHPEGGASFTIELRRAA 603 (603) T ss_pred CCCCCCEEEEEEEECCC T ss_conf 27888448999961579 No 32 >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes.. Probab=100.00 E-value=5.6e-45 Score=326.03 Aligned_cols=465 Identities=17% Similarity=0.252 Sum_probs=323.9 Q ss_pred HHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCC-----CHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 9999998516800589815992898525789873677877566101585338-----96789999861257870345788 Q gi|255764476|r 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVS 267 (792) Q Consensus 193 ~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll-----~~~~~~~~~~~~~~~~~~~~~~~ 267 (792) +.||..+|.+|..|-+.|.+-+|+|+|.||.+.+ ||..++.+|++-..+ ++...+..|...+...||.+.+- T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iT---GY~~eE~iGkNES~LSn~tTPpeVYQaLWg~la~qkPW~G~Ll 80 (496) T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEIT---GYAKEEVIGKNESVLSNRTTPPEVYQALWGSLAEQKPWAGKLL 80 (496) T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE T ss_conf 5688866228803643101456999956632155---8656211125540126858871799999988630589865100 Q ss_pred E-EECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHHH----HHHHCCCCEEEECCCCEEEEECHHHH Q ss_conf 8-656907899999763289--5----29998304589998878899999----98430895999848980898536888 Q gi|255764476|r 268 T-LEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV 336 (792) Q Consensus 268 ~-~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~e----~Ld~l~~~v~ifd~~~rl~~~N~a~~ 336 (792) . ..||+++.-+++-.|+-+ | ..|+.+||||.-..|+..+.++- .++..|.+.++.|+++|++.-|+.|| T Consensus 81 NRrkDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~yk 160 (496) T TIGR02938 81 NRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEYK 160 (496) T ss_pred CCCCCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHH T ss_conf 00116530022202020001468815873254543578899888976467899998786541000569986881677688 Q ss_pred HHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEE Q ss_conf 55099978960499879999989754777664657889999998762467650268878981899997356998689994 Q gi|255764476|r 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416 (792) Q Consensus 337 ~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~~~~w~l~DGr~l~v~~~~~p~Gg~~~~~ 416 (792) +|- .+.-...|++ .+++-||+. |.+. .++.|+. +..++ T Consensus 161 ~La---~DL~v~epa~-~~l~lLre~-----------~~e~----------~~~~~~q--~~afs--------------- 198 (496) T TIGR02938 161 KLA---SDLKVEEPAE-LLLKLLREE-----------LAED----------LEELENQ--EKAFS--------------- 198 (496) T ss_pred HHH---HHCCCCCCHH-HHHHHHHHH-----------HHHH----------HHHHCCC--CCEEC--------------- T ss_conf 787---4214144179-999985087-----------6527----------8652021--10101--------------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCC-CCHHHHHHHHHHHCCCCH Q ss_conf 5957999999999999999999996203432899689848864058887828987894389-838898877763025611 Q gi|255764476|r 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESD 495 (792) Q Consensus 417 ~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 495 (792) + .| +-||.- .|+ ++| T Consensus 199 -n------~E---------------------~rfD~g---------------------gGR~~RW--------------- 214 (496) T TIGR02938 199 -N------KE---------------------LRFDRG---------------------GGRSARW--------------- 214 (496) T ss_pred -C------CE---------------------EEEECC---------------------CCCCCCC--------------- T ss_conf -5------40---------------------354168---------------------8788501--------------- Q ss_pred HHHHHHHHHHCCCCCCCEEEEEE-EECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHH-HHH----HHHHHHH Q ss_conf 46889987402654431156899-97250388899997058876631232068999988889999-999----9999999 Q gi|255764476|r 496 GWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EAL----RKADEIK 569 (792) Q Consensus 496 ~~~~~~~~i~~~~~~r~~~~~~~-~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~-eal----e~a~~lk 569 (792) .+..++. ...++. .+....|-..+.-|+|+.|||+.|+-.+.-|-+. +|| |...-+| T Consensus 215 ----------------lSc~g~~i~~e~~~-ad~fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~r 277 (496) T TIGR02938 215 ----------------LSCAGRVIRIEEDS-ADSFFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALR 277 (496) T ss_pred ----------------EEECCCEEEEECCC-CCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ----------------02023235311364-0115616899830566364788899999999999899998998888876 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHH Q ss_conf 999999666632258999999999735777-8899899999999999999999999999999885149830002330699 Q gi|255764476|r 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 (792) Q Consensus 570 ~~F~~~vSHELrtPLt~I~G~a~lL~~~~~-g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~ 648 (792) ..|-+ .=|.|.-|||-|..-..+|....- ..-|+.-...+..+.+++..-+.- |++.---.+.-...||||+ T Consensus 278 Etl~A-AIhrl~gP~NlisaA~~~L~RRlGD~AGn~a~~~~lqqa~~ag~e~~e~------L~~~IP~s~~e~~~pVNlN 350 (496) T TIGR02938 278 ETLSA-AIHRLQGPLNLISAAISVLERRLGDDAGNDAVAALLQQALAAGREALEA------LEKVIPQSDAEAVVPVNLN 350 (496) T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCCCCCCCCCCCCCHH T ss_conf 66888-8888528710788999986320583237979999999998863999997------5057887724454664277 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCC----EEEEEEEEECCEEEEEEE Q ss_conf 9999999999999984896899995698608998789999999999886775388868----899999987998999999 Q gi|255764476|r 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVK 724 (792) Q Consensus 649 ~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg----~I~i~~~~~~~~v~i~V~ 724 (792) .++++++++.-+++-..||-++....+.||.|.|-+.+++..|=.|+.|||..|...+ ...|..+-.++-|.++|. T Consensus 351 ~~lrdvi~l~T~rLLA~GIvVdW~Pa~~LP~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t~~~~~li~~~i~ 430 (496) T TIGR02938 351 QVLRDVITLLTERLLAAGIVVDWQPAAVLPAVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILTAVEDDLIRVEIE 430 (496) T ss_pred HHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEE T ss_conf 89999998610557557541516561016222078525789999999999998530784102310102230856899997 Q ss_pred ECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 788978977865414883762689888856637999999999619869999788994399999734 Q gi|255764476|r 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 725 D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) |+|||||++..-++||||||+|.+..+.|.|+||+.++.||..|+|-|.|+..+-+|.+.++.||. T Consensus 431 DsGPGIP~dlr~kvFEPFFttK~~~Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~~ 496 (496) T TIGR02938 431 DSGPGIPADLRLKVFEPFFTTKASSGRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFEV 496 (496) T ss_pred ECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC T ss_conf 358798724422523673226888778423346268899975049879736888777357776239 No 33 >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Probab=100.00 E-value=2.8e-45 Score=327.70 Aligned_cols=233 Identities=21% Similarity=0.422 Sum_probs=214.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88999999999999999999996666322589999999997357778899899999999999999999999999999885 Q gi|255764476|r 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 (792) Q Consensus 554 aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i 633 (792) +|.+-+.+||++|..-..|.+.+||+|++||+.|.+|+++|...+-+.+++++++|+..|...+.++.+||+|++.+|++ T Consensus 509 ela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l 588 (750) T COG4251 509 ELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKL 588 (750) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99989988765158999999986104667999999999766634366657588999999999999999999977423120 Q ss_pred HCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC-CEEEEEE Q ss_conf 149830002330699999999999999998489689999569860899878999999999988677538886-8899999 Q gi|255764476|r 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKA 712 (792) Q Consensus 634 ~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~g-g~I~i~~ 712 (792) + ..+...+|.|+..++++++..+..+..+.++.+.+ ++ +|.+.+|+.++.||+.||+.||+||..++ ..|.|++ T Consensus 589 ~--~~~~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~ 663 (750) T COG4251 589 G--LTEAPLQPTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISA 663 (750) T ss_pred C--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEE--CC-CCEEECCHHHHHHHHHHHHHHHEECCCCCCCCEEEEE T ss_conf 5--54577777526789999997345311256524786--25-6446408889999999987655210788898158853 Q ss_pred EEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 9879989999997889789778654148837626898888566379999999996198699997889943999997347 Q gi|255764476|r 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 713 ~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) .+.++.++|+|+|||+||+|+..+|||.+|.+.+...++.||||||+|||.|+|.|+|+|||+|.||+|+||.|+||.. T Consensus 664 ~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~ 742 (750) T COG4251 664 ERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVG 742 (750) T ss_pred ECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECC T ss_conf 3258730798547877769899988899887037565514777338999999998484588860478741689984058 No 34 >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Probab=100.00 E-value=2e-41 Score=301.61 Aligned_cols=349 Identities=21% Similarity=0.305 Sum_probs=257.0 Q ss_pred CCEEEEECCHHHHHHHHHH-----HHHH---HHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHH Q ss_conf 8689994595799999999-----9999---9999999962034328996898488640588878289878943898388 Q gi|255764476|r 410 GGTIWMFENLTVQVDLETK-----YNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481 (792) Q Consensus 410 Gg~~~~~~DITE~~~le~~-----~~~l---~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~ 481 (792) |-+...|.-+|++++.+++ .+.+ .+.....|+.+..||.+|+.+|++..+||+.++|+|.+-+.+.|.. .. T Consensus 338 g~Ls~~FN~M~~eL~~qq~~l~~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~-ls 416 (712) T COG5000 338 GRLSKAFNKMTEQLSSQQEALERAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQS-LS 416 (712) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHH-HH T ss_conf 89999999999999999999998788899999889999815850389974787077626017888468706764402-66 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC-EEEEEEEEEECC-C--CCEEEECCCCHHHHHHHHHHHH Q ss_conf 98877763025611468899874026544311568999725-038889999705-8--8766312320689999888899 Q gi|255764476|r 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLP-N--AQTMLTFVNVTDSVRAERALTE 557 (792) Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~d-G~~~~~~~~pl~-d--g~~l~~~~DIT~~k~~E~aL~e 557 (792) .+.......+.....| +-.+.+.. ..+.+.+ -+.+.......+ | ++.+++|.|||+-+.+++.-.- T Consensus 417 a~ap~~~~vf~~~~a~--------~~~~~~~e--v~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQRs~AW 486 (712) T COG5000 417 AIAPELEEVFAEAGAA--------ARTDKRVE--VKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQRSAAW 486 (712) T ss_pred HHHHHHHHHHHHHHHH--------CCCCCCEE--EECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 4213789999976540--------38774201--0001478741566675321444688569996350899999998789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999966663225899999999973577788998-99--9999999999999999999999998851 Q gi|255764476|r 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQ--SQYVEYISASSTILLNLVNDILDLATVD 634 (792) Q Consensus 558 ~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~-~q--~e~~~~I~~s~~~l~~li~diLdls~i~ 634 (792) .+-+-.++||++||||.|.-.+|-|+..+-..+++ ++ ..+.+.|.+..+.+.++|++.-+|+|.- T Consensus 487 ------------~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP 554 (712) T COG5000 487 ------------GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP 554 (712) T ss_pred ------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf ------------99999998872499862200289999883741234899999999999999999999999999871489 Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCC-------CCCCE Q ss_conf 49830002330699999999999999998489689999569860899878999999999988677538-------88688 Q gi|255764476|r 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-------SKGST 707 (792) Q Consensus 635 aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~-------~~gg~ 707 (792) ++.+++.||++++.+++.+.+ +....|.+..+...++-...+|+..|.|||.||+.||..+. ++++. T Consensus 555 ----~p~~e~~dL~~ll~e~~~L~e--~~~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~ 628 (712) T COG5000 555 ----APKLEKSDLRALLKEVSFLYE--IGNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTAL 628 (712) T ss_pred ----CCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE T ss_conf ----987774229999999999996--26877699753189862532489999999999987199875310134677643 Q ss_pred EEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-CCCCEEEEE Q ss_conf 9999998799899999978897897786541488376268988885663799999999961986999978-899439999 Q gi|255764476|r 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC 786 (792) Q Consensus 708 I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~-~G~Gttf~v 786 (792) |+++....++.+++.|.|||.|.|.+.+.|+||||.|++. .||||||+|||+|||.|||.+++... .-.|+.+.+ T Consensus 629 i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~----KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i 704 (712) T COG5000 629 IRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTRE----KGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRI 704 (712) T ss_pred EEEEEECCCCEEEEEEECCCCCCCHHHHHHHCCCCEECCC----CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEE T ss_conf 8999844798499998108987996786432367142165----666623999999999638827724789999767999 Q ss_pred EEECC Q ss_conf 97347 Q gi|255764476|r 787 RIPSK 791 (792) Q Consensus 787 ~lP~~ 791 (792) -||.+ T Consensus 705 ~fp~~ 709 (712) T COG5000 705 KFPLK 709 (712) T ss_pred ECCCC T ss_conf 83656 No 35 >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Probab=100.00 E-value=2.9e-35 Score=259.35 Aligned_cols=216 Identities=35% Similarity=0.581 Sum_probs=191.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEC Q ss_conf 9999999966663225899999999973577788998999999999999999999999999998851498-300023306 Q gi|255764476|r 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIV 646 (792) Q Consensus 568 lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~-~~l~~~~vd 646 (792) .+..|++.++||+|||++.|.++++++... ..+. +.+++..+..+.+++..++++++++++++.+. ......+++ T Consensus 114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~---~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 189 (336) T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG---LLDP-QRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVD 189 (336) T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 999999999888589799999999997414---6525-999999999999999999999999997644574422346455 Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEEC Q ss_conf 99999999999999998489689999569860899878999999999988677538886889999998799899999978 Q gi|255764476|r 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 (792) Q Consensus 647 l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~ 726 (792) +..++.++...+...+....+.+....+ ....+.+|+.++.|||.||++||+||++ ++.|.|.+...++.+.++|.|+ T Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~~i~i~V~D~ 267 (336) T COG0642 190 LAELLEEVVRLLAPLAQEKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDEQVTISVEDT 267 (336) T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEECC-CCEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEECC T ss_conf 9999999999999876634848998237-6607860788999999999998998668-9859999996387799999807 Q ss_pred CCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 89789778654148837626898888566379999999996198699997889943999997347 Q gi|255764476|r 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 727 G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) |+|||++.++++|+||++++..+. |+||||+||+++++.|||.+.++|.||.||+|+++||.. T Consensus 268 G~Gi~~~~~~~if~~~~~~~~~~~--g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~ 330 (336) T COG0642 268 GPGIPEEELERIFEPFFRTDKSRS--GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLA 330 (336) T ss_pred CCCCCHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECC T ss_conf 899798899988188634799989--886329999999998799899950799977999998477 No 36 >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase; InterPro: IPR014265 Proteins in this entry are putative periplasmic sensor signal transduction histidine kinases. They all contain a GAF domain that is present in phytochromes and cGMP-specific phosphodiesterases, and which has been experimentally proven to be involved in protein:protein interactions. They also contain a C-terminal histidine kinase domain, which is composed of a dimerisation sub-domain and an ATP/ADP-binding phosphotransfer, or catalytic, sub-domain. The proteins in this entry are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014264 from INTERPRO and IPR014266 from INTERPRO also occur.. Probab=100.00 E-value=2.9e-35 Score=259.41 Aligned_cols=225 Identities=21% Similarity=0.335 Sum_probs=179.4 Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 6899998888--999999999999999--999996666322589999---999997357778899899999999999999 Q gi|255764476|r 546 TDSVRAERAL--TEKNEALRKADEIKN--SFVQHVSYELRSPLTNII---GFTDLLKTSKLGSLNSKQSQYVEYISASST 618 (792) Q Consensus 546 T~~k~~E~aL--~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~---G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~ 618 (792) |-.|++-..| .|.+|+|-.|-|..+ .+-+=|=|||+|-.+-.. -+|+--+ +-++=|.+-++.|..+.+ T Consensus 459 t~~rQAASyLa~~~a~e~L~~arqF~~FnR~SaFvVHDLKNLvaQLSL~l~NA~~Hk-----~NPeFq~DmL~Tv~~~v~ 533 (696) T TIGR02916 459 TAGRQAASYLAQMEASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHK-----DNPEFQDDMLETVESAVN 533 (696) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHH T ss_conf 999999999999999999998888875188034211025899999999999887417-----896689999998999999 Q ss_pred HHHHHHHHHHHHHHHHCCCC-CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEE-CCC--CCEEEECHHHHHHHHHHH Q ss_conf 99999999999988514983-00023306999999999999999984896899995-698--608998789999999999 Q gi|255764476|r 619 ILLNLVNDILDLATVDAGIM-KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGK--LGSFVADRQRLLQIFSKI 694 (792) Q Consensus 619 ~l~~li~diLdls~i~aG~~-~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~-~~~--~~~v~~D~~rL~QVl~NL 694 (792) ||..++.++ ..+.. +-+...||+.++++.+.+.-+ ..+..+ ++.+ +.+ + .|.+|+-||+.|+.|| T Consensus 534 RM~~ll~qL------r~~~~p~~~~~~~~l~~L~~~~~~~k~--~q~p~~--e~~~~~~~~rl-~~~a~~erl~rV~gHL 602 (696) T TIGR02916 534 RMKKLLAQL------REKGLPEEEKKTVDLVDLLRRVIASKR--AQQPRP--EVSIEDTDFRL-SVRADRERLERVLGHL 602 (696) T ss_pred HHHHHHHHH------HCCCCCCHHHHEEHHHHHHHHHHHHHH--HCCCCE--EEEECCCCEEE-EEEECHHHHHHHHHHH T ss_conf 999999997------306897405641038999999999986--318944--89971754178-8875288899999999 Q ss_pred HHHHHHCCCCCCEEEEEEEEEC-CEEEEEEEECCCCCCHHH-HHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEE Q ss_conf 8867753888688999999879-989999997889789778-65414883762689888856637999999999619869 Q gi|255764476|r 695 LSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDM-CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 (792) Q Consensus 695 l~NAik~~~~gg~I~i~~~~~~-~~v~i~V~D~G~GI~~e~-~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I 772 (792) +-||+.+||+.|.|.|++.+.+ +.+.|+|.|||+||+++. ++|+|.||.|||.. .|.|+|.+=||++|+.|||+| T Consensus 603 ~QNAlEAT~~~G~V~~~~~~~~~~~a~i~i~D~G~GM~~~FiR~rLF~PF~tTK~~---aGMGIG~YE~~~yv~e~GG~i 679 (696) T TIGR02916 603 VQNALEATPEEGRVKIRVERECGGAAVIEIEDSGCGMSEAFIRERLFKPFDTTKGN---AGMGIGVYECRQYVEELGGRI 679 (696) T ss_pred HHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC---CCCCCCHHHHHHHHHHHCCCE T ss_conf 99888604999628999874188822799986578998589984078997544566---787201899999999838905 Q ss_pred EEEEECCCCEEEEEEEE Q ss_conf 99978899439999973 Q gi|255764476|r 773 SISSSDEGVTTINCRIP 789 (792) Q Consensus 773 ~v~S~~G~Gttf~v~lP 789 (792) +|+|.||+||+||+.|| T Consensus 680 ~V~S~pG~Gt~ftl~LP 696 (696) T TIGR02916 680 EVESTPGKGTIFTLVLP 696 (696) T ss_pred EEEEECCCCEEEEEECC T ss_conf 88863588548887449 No 37 >PRK09776 putative sensor protein; Provisional Probab=100.00 E-value=9.1e-32 Score=235.47 Aligned_cols=367 Identities=15% Similarity=0.080 Sum_probs=240.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHH----HH Q ss_conf 999999999999999999999998516800589815992898525789873677877566101585-3389678----99 Q gi|255764476|r 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI----KK 250 (792) Q Consensus 176 ~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~----~~ 250 (792) ......+...+.+.+|+++||+++|.+|.++++.+.||+++.||+++|++.+ |+.++...... ++.++.+ .+ T Consensus 287 ~~~~~~r~~~~~l~~SE~rfR~~~e~saiGmAlV~~dGr~l~VN~alc~mlG---Ys~~ELl~ltf~diThPdDl~~dl~ 363 (1116) T PRK09776 287 MVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLG---YSQEELRGLTFQQLTWPEDLNKDLQ 363 (1116) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHC---CCHHHHHHCCHHHHCCCCCHHHHHH T ss_conf 9999999888887767999999987466646998689818981699998849---8999985298988169621777899 Q ss_pred HHHHHCCCC--CEEEEEEEEEECCEEEEEEEEEEEC--CCC----EEEEEEEHHHHHHHHHHHHHHHHHH----HHCCCC Q ss_conf 998612578--7034578886569078999997632--895----2999830458999887889999998----430895 Q gi|255764476|r 251 RMISSSALE--KNFCETVSTLEHGNNKSYKIVRVLN--SFG----EAGIAIDVSKEITVNDQLTHTYEIL----HNLTVA 318 (792) Q Consensus 251 ~~~~~~~~~--~~~~~~~~~~~~G~rr~~~v~~~~~--~~G----~~Gia~DITErk~ae~aLrr~~e~L----d~l~~~ 318 (792) .+....... ....+.+++..+|+..|..++.... ..| .+++..||||||++|+++++..+.+ +....| T Consensus 364 ~~~~LlaGei~~y~lEKRyirkDG~~vW~~ltvSlvRd~~G~p~~fI~~v~DIterK~aE~~lr~l~erl~la~ea~~iG 443 (1116) T PRK09776 364 QVEKLLSGEINSYSMEKRYYNRDGDVVWALLAVSLVRDTDGTPLYFIAQIEDINELKRTEQVNERLMERITLANEAGGIG 443 (1116) T ss_pred HHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999769966454112467369979999989999976999844899999733377999999999999999998624766 Q ss_pred EEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC--CEEEECCC Q ss_conf 9998489808985368885509997896049987999998975477766465788999999876246765--02688789 Q gi|255764476|r 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPN 396 (792) Q Consensus 319 v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~--~~~w~l~D 396 (792) ++-+|......+||+...+++|++++. .|......+.+ .|+.. ...............+. +.-...|| T Consensus 444 iwe~d~~~~~i~~~~r~~~l~g~~~~~---~~~~~~w~~~i-----hPdD~--~~v~~~~~~~l~~~~~~d~E~Rl~~~d 513 (1116) T PRK09776 444 IWEWDLKPNIISWDKRMFELYEIPPHI---KPNWQVWYACL-----HPEDR--QRVEKEIRDALQGRSPFKLEFRIVVPD 513 (1116) T ss_pred EEEEECCCCCEECCHHHHHHHCCCCCC---CCCHHHHHHHC-----CHHHH--HHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 355205665021137899984888222---66889998723-----91568--999999999971588756046788479 Q ss_pred CCEEEEEE--E--ECCCCC---EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCC Q ss_conf 81899997--3--569986---8999459579999999999999999999962034328996898488640588878289 Q gi|255764476|r 397 GQTLHVIV--T--SNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469 (792) Q Consensus 397 Gr~l~v~~--~--~~p~Gg---~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~ 469 (792) |++.++.. . .+.+|. +..+..||||+|++|+++....+..+.+++++.|+|.++|.+|++.+.||++++|+|| T Consensus 514 G~~r~i~~~a~~~~d~~G~~~r~~G~~~DITe~K~~eeaL~e~~erl~~~l~si~d~vi~tD~~~ri~~~Npaae~~tG~ 593 (1116) T PRK09776 514 GEIRHIRALANRVLNKDGEVERLLGINMDMTEVRQLNEALFEEKERLHITLDSIGEAVVCTDAAMKVTFMNPVAEKMTGW 593 (1116) T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCC T ss_conf 97899986214898689988988731323207789999999999999999834022489973788678886999998298 Q ss_pred CHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEECCC--C---CEEEEC Q ss_conf 87894389838898877763025611468899874026544311568999725038--8899997058--8---766312 Q gi|255764476|r 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPN--A---QTMLTF 542 (792) Q Consensus 470 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~pl~d--g---~~l~~~ 542 (792) +.+++.+.|. ..+.....+. .....-....................+..++|.. +..+..|+.| | +.+++| T Consensus 594 ~~~e~~G~~~-~~v~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~G~~~~v~~s~~pi~~~~g~~~g~V~v~ 671 (1116) T PRK09776 594 TQEEALGVPL-LTVLHITFGD-NGPLMENPVEICLADTSRSYLEQDVVLHSRSGGSYDVQYSIAPLSTLDGENIGSVLVF 671 (1116) T ss_pred CHHHHCCCCH-HHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEE T ss_conf 8799849987-8970036644-2111121999997407873312353688269968999973045134778554479852 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 320689999888899 Q gi|255764476|r 543 VNVTDSVRAERALTE 557 (792) Q Consensus 543 ~DIT~~k~~E~aL~e 557 (792) .|||++|++|+.|.. T Consensus 672 ~Dit~~k~~~~~l~~ 686 (1116) T PRK09776 672 QDVTESRAMLRQLSY 686 (1116) T ss_pred CCHHHHHHHHHHHHH T ss_conf 012299999999987 No 38 >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Probab=100.00 E-value=6.6e-32 Score=236.39 Aligned_cols=310 Identities=17% Similarity=0.267 Sum_probs=221.7 Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHH--HHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 999999999962034328996898488640588878289878--943898388988777630256114688998740265 Q gi|255764476|r 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN--RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508 (792) Q Consensus 431 ~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 508 (792) ++.+.+.++|+++.|||...++.|.+.++|.+.++|+|+... ...+++- .++. .|...-+ .+ . T Consensus 212 ~l~~er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i-~~v~---~p~~~l~----~v-------l 276 (537) T COG3290 212 TLLEERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSI-VEVL---PPDSDLP----EV-------L 276 (537) T ss_pred HHHHHHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCC-EEEE---CCCCCCH----HH-------H T ss_conf 999999999987636289987898576112889998465676756446610-3761---5636757----78-------7 Q ss_pred CCCCEEEEEEEECCEEEEEEEEEECCCC----CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4431156899972503888999970588----766312320689999888899999999999999999999666632258 Q gi|255764476|r 509 DERKSLQGTLELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 (792) Q Consensus 509 ~~r~~~~~~~~~~dG~~~~~~~~pl~dg----~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPL 584 (792) +.+++...+.-+.+|+.+-...+|..-| +.+++|+|-||-++.-++|..-++-. +-+...+||..|-| T Consensus 277 ~~~~~~~~~e~~~ng~~~i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~vr~ya--------~aLRaq~HEfmNkL 348 (537) T COG3290 277 ETGKPQHDEEIRINGRLLVANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQYA--------EALRAQSHEFMNKL 348 (537) T ss_pred HCCCCCCCHHHHCCCEEEEEEECCEEECCEEEEEEEEEECHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH T ss_conf 5077631134414775999985237888977689998763778999999999899999--------99988528888889 Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHH Q ss_conf 99999999973577788998999999999999999999999999998851498300023306999999999999999984 Q gi|255764476|r 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 (792) Q Consensus 585 t~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~ 664 (792) ++|.|+.+|=. + ++..+|+..+. +.-..+++.+. .+ .. ++.+...+-.-..++++ T Consensus 349 htI~GLlql~~--y-----d~a~~~I~~~~---~~qq~~~~~l~--~~---------i~----~~~lAg~LlgK~~rArE 403 (537) T COG3290 349 HTILGLLQLGE--Y-----DDALDYIQQES---EEQQELIDSLS--EK---------IK----DPVLAGFLLGKISRARE 403 (537) T ss_pred HHHHHHHHHCC--H-----HHHHHHHHHHH---HHHHHHHHHHH--HH---------CC----CHHHHHHHHHHHHHHHH T ss_conf 99987885053--7-----89999999987---64045689999--85---------12----08889998868999997 Q ss_pred CCCEEEEEECCCCCE--EEECHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHC Q ss_conf 896899995698608--998789999999999886775388---868899999987998999999788978977865414 Q gi|255764476|r 665 NNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 (792) Q Consensus 665 ~~i~l~~~~~~~~~~--v~~D~~rL~QVl~NLl~NAik~~~---~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF 739 (792) .|+.|.++....++. -.-++.-+--++-||+.||....- +..+|.++....++.+.++|+||||||||+.+++|| T Consensus 404 lgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iF 483 (537) T COG3290 404 LGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIF 483 (537) T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHH T ss_conf 29659975798678898766767899999998877888851557896799999836987999995799998968877787 Q ss_pred CCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 8837626898888566379999999996198699997889943999997347 Q gi|255764476|r 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 740 ~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) +.=++++.. .|.|.||++||++|+.+||.|+++|+++.||+|++++|-. T Consensus 484 e~G~Stk~~---~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~ 532 (537) T COG3290 484 EKGVSTKNT---GGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKV 532 (537) T ss_pred HCCCCCCCC---CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCC T ss_conf 348414677---8876128899999987496699950789814999988887 No 39 >PRK13560 hypothetical protein; Provisional Probab=100.00 E-value=1.1e-30 Score=228.00 Aligned_cols=501 Identities=12% Similarity=0.136 Sum_probs=283.4 Q ss_pred HHHHHHHHHHHH-HHHHHHCCCCEEE--ECCCCCEEE--ECHHHHHHHCCCCCC---HHHH----H-CCCCCCCCHHH-H Q ss_conf 999999999999-9998516800589--815992898--525789873677877---5661----0-15853389678-9 Q gi|255764476|r 184 KCKKLSNHISVF-KVLFDSLDFLVWH--RDQAGDILW--ANISYKKNTETEGIV---FQKA----I-GESRKLFKEEI-K 249 (792) Q Consensus 184 ~~~~L~~~~~~l-r~llda~P~~vw~--~D~dGri~~--vN~A~~~~~e~~~~~---~~~~----i-~~~~~ll~~~~-~ 249 (792) ++.++++..+.. |.+..++|..++. .|+||+..| +..|.....++..+. .... + +.+.+.+.... | T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (807) T PRK13560 58 AEAEAQDCREQCERNLKANIPGGMFLFALDGDGTFSFPSLLDANGELAAIAKHDLMADKGLLAMLIGGDDGDFFFANPFR 137 (807) T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCHHHHHHCHHHHCCCHHHHHHEECCCCCCEECCCHHH T ss_conf 77788999999998787279870799997588740435676523368861804332633256531154666701234676 Q ss_pred --HHHHHHCCCCCEEEEEEEEEECCEEEEEEEEEEEC--CCC---EEEEEEEHHHHHHHHHHHHHHH----HHHHHCCCC Q ss_conf --99986125787034578886569078999997632--895---2999830458999887889999----998430895 Q gi|255764476|r 250 --KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--SFG---EAGIAIDVSKEITVNDQLTHTY----EILHNLTVA 318 (792) Q Consensus 250 --~~~~~~~~~~~~~~~~~~~~~~G~rr~~~v~~~~~--~~G---~~Gia~DITErk~ae~aLrr~~----e~Ld~l~~~ 318 (792) +.+..++ ....|++.......|+.||++....|- +.| .-|++.||||||++|++|+.+. ..+|++|++ T Consensus 138 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~DITERKraE~rl~~ql~flq~LlDnipdp 216 (807) T PRK13560 138 SAETIAMAL-QSDDWQEEEGHFRCGDGRFIDCCLRFERHAHADDQVDGFAEDITERKRAEERIDEALHFLQQLLDNIADP 216 (807) T ss_pred HHHHHHHHC-CCCCHHHHHCCCCCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 799998752-7886587516666699505663054210897345555677876777789999999999999998548874 Q ss_pred EEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHCCCCC-CEEE-EC Q ss_conf 999848980898536888550999789604998799999897547776646--5788999999876246765-0268-87 Q gi|255764476|r 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL--NWKTWKENIFSVYKSSETH-KDTW-HL 394 (792) Q Consensus 319 v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~--d~~~w~~~~~~~~~~~~~~-~~~w-~l 394 (792) |..-|.++++.+||++|++++|++++.+.+...+.. .|.+. +|.. ............ .+.| .. T Consensus 217 vF~kD~~G~ylgcN~afe~~~G~~re~i~G~ti~Dl----------~p~e~ad~y~~---~d~~~l~~~~~~~~E~~v~~ 283 (807) T PRK13560 217 AFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDF----------APAQPADDYQE---ADAAKFDADGSQIIEAEFQN 283 (807) T ss_pred EEEECCCCCEEEECHHHHHHCCCCHHHHCCCCCCCC----------CCHHHHHHHHH---HHHHHHCCCCCEEEEEEEEC T ss_conf 699779951896209999880999999568610127----------81556899987---50886418875575520377 Q ss_pred CCCCEE--EEEEE--E--CCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE-ECHHHH Q ss_conf 898189--99973--5--6998---689994595799999999999999999999620343289968984886-405888 Q gi|255764476|r 395 PNGQTL--HVIVT--S--NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL-SNPAFR 464 (792) Q Consensus 395 ~DGr~l--~v~~~--~--~p~G---g~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~-~N~a~~ 464 (792) |||+.. .|..+ | .+.| |++.++.||||||++|+.++......+..+++++.+|.+++++|++.+ +||+.+ T Consensus 284 ~DG~~~~~~v~~nka~~~d~~g~~~GlvGv~~DITeRK~aEe~LresEer~R~i~E~a~~gI~~~D~~g~i~~~~n~aae 363 (807) T PRK13560 284 KDGRTRPVDVIFNHAEFDDKENHCAGLVGAITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAE 363 (807) T ss_pred CCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHH T ss_conf 99857579999862233387886656888876156778899999998999999987366534786267615761261678 Q ss_pred HHHCCCHHHHCCCCCHHH----HH-HHHHH---HCCCCHH--HHH--HHHHHHCCCCCCCEEEEEEEECCEEEEEEE--E Q ss_conf 782898789438983889----88-77763---0256114--688--998740265443115689997250388899--9 Q gi|255764476|r 465 SLWKTEENRLSPGTHIRN----IA-ATCSR---YYNESDG--WDL--FAAIITSFDDERKSLQGTLELLSDSVLEYS--I 530 (792) Q Consensus 465 ~l~g~~~~~l~~~~~~~~----~~-~~~~~---~~~~~~~--~~~--~~~~i~~~~~~r~~~~~~~~~~dG~~~~~~--~ 530 (792) +|+||+.+++.+.+-+.. -. -+|.. .+++... ... +...+..- ..-...+.+..++||+.+.+. . T Consensus 364 ~m~G~s~eE~lg~~lw~~~pe~~~e~~~~~~~~~~pdgr~~~~~~c~~a~~~r~g-~~~~g~E~~~~RkDGt~~~~~~~~ 442 (807) T PRK13560 364 RMLGWSAAEVMGKPLPGMDPELNEEFWCGDFQEWYPDGRPMAFDACPMAKTIKGG-KIFDGQEVLIEREDDGPADCSAYA 442 (807) T ss_pred HHHCCCHHHHCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHCC-CCCCCCEEEEEECCCCEEEEEECC T ss_conf 7626876886077433568344133313406551666563431012366776137-877886379990699657788613 Q ss_pred EECC--CCC---EEEECCCCHHHHHHHHHHHHHHHHHHHHHH----HH---------------------HHHHH------ Q ss_conf 9705--887---663123206899998888999999999999----99---------------------99999------ Q gi|255764476|r 531 IPLP--NAQ---TMLTFVNVTDSVRAERALTEKNEALRKADE----IK---------------------NSFVQ------ 574 (792) Q Consensus 531 ~pl~--dg~---~l~~~~DIT~~k~~E~aL~e~~eale~a~~----lk---------------------~~F~~------ 574 (792) .|+. ||. .+.++.|||++|++|++|++.|..++.++- .| .||++ T Consensus 443 ~pL~D~dG~~~gal~i~~DITERKqAEeaLr~sn~iLEnSp~il~~~~~~~gw~ve~vs~~v~~fGYt~eE~isg~~~~~ 522 (807) T PRK13560 443 EPLHDADGNIIGAIALLVDITERKQVEEQLLLANLIVENSPLVLFRWKAEEGWPVELVSKNITQFGYEPDEFISGKRMFA 522 (807) T ss_pred EEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCHHHHHCCCHHHHCCCCEEHH T ss_conf 02256788853311001124277889999999888875297404787515786237523214550888788424231012 Q ss_pred -HH-HHHHHHHHHHHHHHHHHHHC--------------------------CCCC----------CCCHHH--HH------ Q ss_conf -96-66632258999999999735--------------------------7778----------899899--99------ Q gi|255764476|r 575 -HV-SYELRSPLTNIIGFTDLLKT--------------------------SKLG----------SLNSKQ--SQ------ 608 (792) Q Consensus 575 -~v-SHELrtPLt~I~G~a~lL~~--------------------------~~~g----------~l~~~q--~e------ 608 (792) .+ ..++++..+.+..+..--.+ ...| +.+++. .+ T Consensus 523 ~lvhPeDr~~v~~~l~~~~~~G~~~f~~eyRi~~kdGsvrWI~~~~~~irDe~G~V~~~~giv~DIT~~k~aee~l~asL 602 (807) T PRK13560 523 AIIHPADLEQVAAEVAEFAAQGVDRFEQEYRILGKGGAVCWIDDQSAAERDEEGQISHFEGIVIDISERKHAEEKIKAAL 602 (807) T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHH T ss_conf 05797888889999998741575522016888769996899970135611788875444446743528888999999999 Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEC Q ss_conf -----999999999999999999999988514983000233069999999999999999848968999956986089987 Q gi|255764476|r 609 -----YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 (792) Q Consensus 609 -----~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D 683 (792) .+..|.--.+.-+.+|..+|.+..- .. ..=+....+.++...+...+.-+.. | .-.+++..|. T Consensus 603 ~EKE~LLkEIHHRVKNNLQiIsSLL~LQar---~~----~d~ear~aL~esq~RI~SmAlVHe~-L--y~S~dl~~Id-- 670 (807) T PRK13560 603 TEKEVLLKEIHHRVKNNLQIISSLLDLQAE---KL----HDEEAKCAFAESQDRICAMALAHEK-L--YQSEDLADID-- 670 (807) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC----CCHHHHHHHHHHHHHHHHHHHHHHH-H--HCCCCCCEEC-- T ss_conf 988999998776752039999999998876---55----9999999999999999999999999-8--5699976572-- Q ss_pred HHHHHHHHHHHHHHHHH-CCCCCCEEEEEEEE Q ss_conf 89999999999886775-38886889999998 Q gi|255764476|r 684 RQRLLQIFSKILSNAMD-FSSKGSTVILKAAR 714 (792) Q Consensus 684 ~~rL~QVl~NLl~NAik-~~~~gg~I~i~~~~ 714 (792) +.+.+.+|+.+-.. |..+...|.+.... T Consensus 671 ---~~~yi~~L~~~L~~s~~~~~~~I~l~vd~ 699 (807) T PRK13560 671 ---FLDYIESLTAHLKNSFAIDFGRIDCKIDA 699 (807) T ss_pred ---HHHHHHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf ---99999999999999737898638999973 No 40 >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Probab=100.00 E-value=5.8e-31 Score=229.97 Aligned_cols=239 Identities=18% Similarity=0.278 Sum_probs=198.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 206899998888999999999999999--9999966663225899999999--973577788998999999999999999 Q gi|255764476|r 544 NVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTD--LLKTSKLGSLNSKQSQYVEYISASSTI 619 (792) Q Consensus 544 DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~G~a~--lL~~~~~g~l~~~q~e~~~~I~~s~~~ 619 (792) .|-+|+++|.+|+.....|-+|.++.. .-+..+||||+.|||+...|.= -++-+. .-++...+|+++|..-.+| T Consensus 424 EveeR~e~ea~L~~~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~--~~s~qa~~~L~kie~L~eR 501 (673) T COG4192 424 EVEERQEAEAHLKKTQGELIQAAKLAVVGQTMTSLAHEINQPLNAMSAYLFSARLALEE--APSAQAATSLDKIENLTER 501 (673) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHH T ss_conf 99999999999998778999999899987788888988557568899999987888851--7458899899988779999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHH Q ss_conf 99999999999885149830002330699999999999999998489689999569860899878999999999988677 Q gi|255764476|r 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 (792) Q Consensus 620 l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAi 699 (792) +..||+.+.-|+|-.++ +-.+.||+|++++..+.+++..+...+.+.|.. |-|.+.|.||..++.|||.||+.||. T Consensus 502 ~~~Iv~sLRqF~Rk~s~--~~~lqpV~L~~~v~~AweLl~~khk~rQ~~Li~--ptD~~~V~gd~v~ieQVlvNl~~Nal 577 (673) T COG4192 502 MGKIVNSLRQFARKNSS--DESLQPVRLNSVVEQAWELLQTKHKRRQIKLIN--PTDDLMVMGDAVSIEQVLVNLIVNAL 577 (673) T ss_pred HHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCEECCHHHHHHHHHHHHHHHHH T ss_conf 99999999999752577--787641109999999999998542000244237--76530000015649999999999888 Q ss_pred HCCCCC-CEEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 538886-889999998-799899999978897897786541488376268988885663799999999961986999978 Q gi|255764476|r 700 DFSSKG-STVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 (792) Q Consensus 700 k~~~~g-g~I~i~~~~-~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~ 777 (792) +.+.-. ..|.+.+.. .++..++.|.|||+|-|-+..+++|.||.+.|.. |.|||||||.+++|.|.|.+.+.|. T Consensus 578 dA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v----gLGlGLSIsqSlmeqmqG~l~lASt 653 (673) T COG4192 578 DASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV----GLGLGLSISQSLMEQMQGRLALAST 653 (673) T ss_pred HHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 664157862799864276421589984489998456778860776643100----5553256789999984274448655 Q ss_pred CCCCEEEEEEEECCC Q ss_conf 899439999973479 Q gi|255764476|r 778 DEGVTTINCRIPSKE 792 (792) Q Consensus 778 ~G~Gttf~v~lP~~e 792 (792) ..+|+.++..|-+.| T Consensus 654 Lt~nA~ViL~f~v~~ 668 (673) T COG4192 654 LTKNAMVILEFQVDE 668 (673) T ss_pred CCCCCEEEEEEEECC T ss_conf 135748999984131 No 41 >PRK09776 putative sensor protein; Provisional Probab=99.97 E-value=1.1e-26 Score=200.76 Aligned_cols=368 Identities=13% Similarity=0.070 Sum_probs=251.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 99999999999999999999860699789998179970014134123218983202344432118946789899999999 Q gi|255764476|r 55 VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134 (792) Q Consensus 55 ~~~l~~~~~~l~~~~~r~~all~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l 134 (792) ....|++...+.++..||+..++.++-.+..-+-.+..-++...++..+|+++++..-+.|....||+|...-.+.++.+ T Consensus 289 ~~~~r~~~~~l~~SE~rfR~~~e~saiGmAlV~~dGr~l~VN~alc~mlGYs~~ELl~ltf~diThPdDl~~dl~~~~~L 368 (1116) T PRK09776 289 MYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKL 368 (1116) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHH T ss_conf 99999888887767999999987466646998689818981699998849899998529898816962177789999999 Q ss_pred HH-CCCEEEE--EEECCCCEEEEEEEEEECCEEEEEEE-----ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 85-3965899--99868972999830455754899874-----0106899999999999999999999999985168005 Q gi|255764476|r 135 RK-EGQSFDL--VAETQNDCAIKIEGRVSGSCAFLRIL-----SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206 (792) Q Consensus 135 ~~-~g~~f~l--~~~t~~g~~i~~~Gr~~g~~a~~r~~-----d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~v 206 (792) .. +-..|.+ ....+||..+|+.=.. +++|.. -+-++-.|++++|+++.+++++.++++.+.++.+.++ T Consensus 369 laGei~~y~lEKRyirkDG~~vW~~ltv----SlvRd~~G~p~~fI~~v~DIterK~aE~~lr~l~erl~la~ea~~iGi 444 (1116) T PRK09776 369 LSGEINSYSMEKRYYNRDGDVVWALLAV----SLVRDTDGTPLYFIAQIEDINELKRTEQVNERLMERITLANEAGGIGI 444 (1116) T ss_pred HCCCCCCCCCEEEEECCCCCEEEEEEEE----EEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 7699664541124673699799999899----999769998448999997333779999999999999999986247663 Q ss_pred EEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHH----HHHCCCCCEEEEE-EEEEECCEEEEEEEEE Q ss_conf 8981599289852578987367787756610158533896789999----8612578703457-8886569078999997 Q gi|255764476|r 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM----ISSSALEKNFCET-VSTLEHGNNKSYKIVR 281 (792) Q Consensus 207 w~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~----~~~~~~~~~~~~~-~~~~~~G~rr~~~v~~ 281 (792) |..|.....+.+|+...++.+... ........+...+++.++... ........++.-. +-...+|+.||+.... T Consensus 445 we~d~~~~~i~~~~r~~~l~g~~~-~~~~~~~~w~~~ihPdD~~~v~~~~~~~l~~~~~~d~E~Rl~~~dG~~r~i~~~a 523 (1116) T PRK09776 445 WEWDLKPNIISWDKRMFELYEIPP-HIKPNWQVWYACLHPEDRQRVEKEIRDALQGRSPFKLEFRIVVPDGEIRHIRALA 523 (1116) T ss_pred EEEECCCCCEECCHHHHHHHCCCC-CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEE T ss_conf 552056650211378999848882-2266889998723915689999999999715887560467884799789998621 Q ss_pred EEC--CC----CEEEEEEEHHHHHHHHHHHHHHH----HHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCC Q ss_conf 632--89----52999830458999887889999----998430895999848980898536888550999789604998 Q gi|255764476|r 282 VLN--SF----GEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351 (792) Q Consensus 282 ~~~--~~----G~~Gia~DITErk~ae~aLrr~~----e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~ 351 (792) .+. .+ +.+|+..||||+|+++++|.+.. .++++++++|.++|.++++.|.|++++++.|++.+.+.+.|- T Consensus 524 ~~~~d~~G~~~r~~G~~~DITe~K~~eeaL~e~~erl~~~l~si~d~vi~tD~~~ri~~~Npaae~~tG~~~~e~~G~~~ 603 (1116) T PRK09776 524 NRVLNKDGEVERLLGINMDMTEVRQLNEALFEEKERLHITLDSIGEAVVCTDAAMKVTFMNPVAEKMTGWTQEEALGVPL 603 (1116) T ss_pred EEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCH T ss_conf 48986899889887313232077899999999999999998340224899737886788869999982988799849987 Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECC----CC---CEEEEECCHHHHHH Q ss_conf 799999897547776646578899999987624676502688789818999973569----98---68999459579999 Q gi|255764476|r 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG---GTIWMFENLTVQVD 424 (792) Q Consensus 352 ~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~~~~w~l~DGr~l~v~~~~~p----~G---g~~~~~~DITE~~~ 424 (792) . .++.-...... +...+ ..+......-...-....+|+..||+...|..+..| +| |.+.+|+||||+|+ T Consensus 604 ~-~v~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~~l~~~~G~~~~v~~s~~pi~~~~g~~~g~V~v~~Dit~~k~ 679 (1116) T PRK09776 604 L-TVLHITFGDNG-PLMEN--PVEICLADTSRSYLEQDVVLHSRSGGSYDVQYSIAPLSTLDGENIGSVLVFQDVTESRA 679 (1116) T ss_pred H-HHHHCCCCCCC-HHHHH--HHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCHHHHHH T ss_conf 8-97003664421-11121--99999740787331235368826996899997304513477855447985201229999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|255764476|r 425 LETKYNT 431 (792) Q Consensus 425 le~~~~~ 431 (792) +|++... T Consensus 680 ~~~~l~~ 686 (1116) T PRK09776 680 MLRQLSY 686 (1116) T ss_pred HHHHHHH T ss_conf 9999987 No 42 >smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. Probab=99.96 E-value=2.6e-28 Score=211.75 Aligned_cols=110 Identities=34% Similarity=0.645 Sum_probs=103.5 Q ss_pred ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCC-CCCCCCHHHHH Q ss_conf 87899999999998867753888688999999879989999997889789778654148837626898-88856637999 Q gi|255764476|r 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSI 760 (792) Q Consensus 682 ~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~-~~~GtGLGLsi 760 (792) +|+.+|.|++.||++||+||+++++.|+|++...++.+.|+|+|+|+|||++.++++|+||++.+... ...|+||||+| T Consensus 1 ~d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i 80 (111) T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRSRKIGGTGLGLSI 80 (111) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCCCEECCCCCCCCCCCCHHHHH T ss_conf 98899999999999999996779978999999839999999998899739899964269947779999887976648999 Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 9999996198699997889943999997347 Q gi|255764476|r 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 761 v~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) |+.++++|||+|+++|.+++||+|+++||.+ T Consensus 81 ~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~~ 111 (111) T smart00387 81 VKKLVELHGGEISVESEPGGGTTFTITLPLE 111 (111) T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEECC T ss_conf 9999998799899996599818999999819 No 43 >pfam02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Probab=99.96 E-value=8.1e-28 Score=208.40 Aligned_cols=110 Identities=33% Similarity=0.610 Sum_probs=103.8 Q ss_pred ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC-CCCCCCCHHHHH Q ss_conf 8789999999999886775388868899999987998999999788978977865414883762689-888856637999 Q gi|255764476|r 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSI 760 (792) Q Consensus 682 ~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~-~~~~GtGLGLsi 760 (792) +|+.+|.||+.||++||+||+++++.|.|++...++.+.|+|+|+|+|||++.++++|+||++.+.. ....|+||||+| T Consensus 1 ~d~~~l~~i~~nll~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i 80 (111) T pfam02518 1 GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERDGGRLRITVEDNGIGIPPEDLPKIFEPFFRTDKDSRKVGGTGLGLSI 80 (111) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCCHHHHH T ss_conf 98899999999999999997799975999999959999999998999959899988749917779999777977647999 Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 9999996198699997889943999997347 Q gi|255764476|r 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 761 v~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) |+.+++.|||.|+++|.+++||+|+++||.. T Consensus 81 ~~~~~~~~~g~i~~~s~~~~Gt~~~i~lp~~ 111 (111) T pfam02518 81 VRKLVELHGGTITVESEPGGGTTFTFTLPLE 111 (111) T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEEEC T ss_conf 9999998799899996599838999999709 No 44 >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Probab=99.94 E-value=2.7e-26 Score=198.02 Aligned_cols=102 Identities=33% Similarity=0.638 Sum_probs=95.7 Q ss_pred HHHHHHHHHHHHHHCCCC-CCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHH Q ss_conf 999999998867753888-6889999998799899999978897897786541488376268988885663799999999 Q gi|255764476|r 687 LLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 (792) Q Consensus 687 L~QVl~NLl~NAik~~~~-gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iV 765 (792) |+||+.||++||+||+++ .+.|+|.+...++.+.|+|+|||+|||++.++++|+||++.......+|+||||+||+.++ T Consensus 1 l~~vl~nLl~NAik~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~g~GlGL~i~~~i~ 80 (103) T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDGSRSRKGGGTGLGLSIVKKLV 80 (103) T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 96999999999998678999489999998399999999977994088999760697501788877898650599999999 Q ss_pred HHCCCEEEEEEECCCCEEEEEEE Q ss_conf 96198699997889943999997 Q gi|255764476|r 766 NLHGGHVSISSSDEGVTTINCRI 788 (792) Q Consensus 766 e~hgG~I~v~S~~G~Gttf~v~l 788 (792) +.|||.|+++|.+|+||+|+++| T Consensus 81 ~~~~G~i~i~s~~~~Gt~~~i~l 103 (103) T cd00075 81 ELHGGRIEVESEPGGGTTFTITL 103 (103) T ss_pred HHCCCEEEEEECCCCCEEEEEEC T ss_conf 98899899996599919999989 No 45 >PRK11359 cAMP phosphodiesterase; Provisional Probab=99.93 E-value=2.5e-22 Score=170.79 Aligned_cols=224 Identities=11% Similarity=0.004 Sum_probs=100.8 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHC------CCE Q ss_conf 99999999860699789998179970014134123218983202344432118946789899999999853------965 Q gi|255764476|r 67 DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE------GQS 140 (792) Q Consensus 67 ~~~~r~~all~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l~~~------g~~ 140 (792) .+..+|++.|+..|..+++-|..+....+........|++.++.--..+...++++........+...+.. |.. T Consensus 9 ~~~~~fr~~lE~s~~GIviiD~~GrIv~~N~aa~~l~GYs~eEllG~~~~~L~p~d~~~~~~~~l~~~~~~g~~~~~g~~ 88 (799) T PRK11359 9 AADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMS 88 (799) T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCE T ss_conf 54799999996188549999699909987189999879299998599889927853331239999987742655445640 Q ss_pred EEEEEECCCCEEEEEEEEE--E--CCE--EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 8999986897299983045--5--754--899874010689999999999999999999999998516800589815992 Q gi|255764476|r 141 FDLVAETQNDCAIKIEGRV--S--GSC--AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214 (792) Q Consensus 141 f~l~~~t~~g~~i~~~Gr~--~--g~~--a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGr 214 (792) .++....++|..+++.-.. . +|. .+..++|+|. +.+++++.+.++.++|+++.++|+.|.+|+ T Consensus 89 ~E~~~~RKDGs~~~velsvs~i~~~g~i~~l~ivrDITe-----------e~a~~e~~r~l~~~ld~~~~~I~i~D~~g~ 157 (799) T PRK11359 89 RELQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASV-----------EMAQKEQTRQLIIAVDHLDRPVIVLDPERH 157 (799) T ss_pred EEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEECCH-----------HHHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 489998588889999999977647992899999997689-----------999999999999998626872999918987 Q ss_pred EEEECHHHHHHHCCCCCCHHHHHCCCC-CCC-----CHHHHHHHHHHCCCCCEEEEE-EEEEECCEEEEEEEEEEECC-- Q ss_conf 898525789873677877566101585-338-----967899998612578703457-88865690789999976328-- Q gi|255764476|r 215 ILWANISYKKNTETEGIVFQKAIGESR-KLF-----KEEIKKRMISSSALEKNFCET-VSTLEHGNNKSYKIVRVLNS-- 285 (792) Q Consensus 215 i~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~rr~~~v~~~~~~-- 285 (792) ++++|++|+++++ ++.++.++... +++ .......+.........++.. .....+|+..|+.++..|.. T Consensus 158 i~~vN~a~~el~G---y~~eEl~G~~~~~ll~~pe~~~~~~~~~~~~l~~~~~~~~E~~~~~kdG~~~wv~~s~~pi~d~ 234 (799) T PRK11359 158 IVQCNRAFTEMFG---YCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDV 234 (799) T ss_pred EEEECHHHHHHHC---CCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEEECC T ss_conf 8998778999859---9878974898899834878847999999999864897305899982699799999898899848 Q ss_pred C----CEEEEEEEHHHHHHHHHH Q ss_conf 9----529998304589998878 Q gi|255764476|r 286 F----GEAGIAIDVSKEITVNDQ 304 (792) Q Consensus 286 ~----G~~Gia~DITErk~ae~a 304 (792) . +.+++..||||+|++++. T Consensus 235 ~g~~~~~v~i~~DITErr~~~~l 257 (799) T PRK11359 235 LAHLQNLVMTFSDITEERQIRQL 257 (799) T ss_pred CCCEEEEEEEEEECCHHHHHHHH T ss_conf 89888999999731588899999 No 46 >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Probab=99.93 E-value=1e-20 Score=159.77 Aligned_cols=331 Identities=15% Similarity=0.274 Sum_probs=242.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC-CCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 95799999999999999999999620343289968-98488640588878289878943898388988777630256114 Q gi|255764476|r 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 (792) Q Consensus 418 DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~-dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 496 (792) +++.+++..+. .-.+.+.+++-|+.|++- +.|.+.+|.-...++ ++-....+...... T Consensus 333 ~m~~eL~~~~~------l~~eIIs~lP~GlLVYdF~sN~~i~SNkIAdhLL--------Phl~LqkI~~MA~q------- 391 (881) T PRK10618 333 SMSGELRILRA------INEEIVSLLPLGLLVYDFSSNRTVISNKIADHLL--------PHLNLQKITTMAEQ------- 391 (881) T ss_pred HHHHHHHHHHH------HHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHC--------CCCCHHHHHHHHHH------- T ss_conf 48889999988------6888985487506999746895773026788655--------76678999999997------- Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68899874026544311568999725038889999705887663123206899998888999999999999999999996 Q gi|255764476|r 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 (792) Q Consensus 497 ~~~~~~~i~~~~~~r~~~~~~~~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~v 576 (792) .+++--...+..-++-++- ...-.|+ -.+..++|=-...-+.+.|+.++...++-.+++..|++|| T Consensus 392 ----H~GvIQ~tInNevYEIr~~---------rSq~~p~-T~LFii~DqDkEvLvnKkLq~AqreYeKN~qaRk~~l~Ni 457 (881) T PRK10618 392 ----HQGVIQATINNELYEIRMF---------RSQVAPR-TQLFIIRDQDREVLVNKKLQQAQREYEKNQQARRAFLQNI 457 (881) T ss_pred ----HCCEEEEEECCEEEEEEEE---------ECCCCCC-EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ----3786899883606788854---------2257875-3799997575899988999999999986699999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHH Q ss_conf 66632258999999999735777889989999999999999999999999999988514983000233069999999999 Q gi|255764476|r 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 (792) Q Consensus 577 SHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~ 656 (792) ++||+.|+..|.-.+.-|.... + .+.++.+...+..+.++|++|-=+.++|++....+.++|.+..++++++. T Consensus 458 ~~el~~Pl~~l~~~~~~l~~~~-----~--~~~l~~L~~qs~~i~~lidnI~Lln~LEsq~W~~~~~~Fsl~~Lid~~l~ 530 (881) T PRK10618 458 GDELKEPVQSLAELAAQLNAPE-----S--QQLLKQLAEQADVLVRLIDNIQLANMLENDEWKSEQTLFSLQDLIDEVVP 530 (881) T ss_pred HHHHHHHHHHHHHHHHHHHCCC-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 9998778999999999862524-----4--67999999999999999988999988860567656771049999999999 Q ss_pred HHHHHHHHCCCEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE---CCEEEEEEEECCCCCCH Q ss_conf 9999998489689999569860-8998789999999999886775388868899999987---99899999978897897 Q gi|255764476|r 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIPE 732 (792) Q Consensus 657 ~~~~~~~~~~i~l~~~~~~~~~-~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~---~~~v~i~V~D~G~GI~~ 732 (792) ..-+.+..||..|-+..-.+.. ...||+.-|+.|+.=|+.=|+.-|. =|.|++++..+ .+.+.|.+.|||.|++. T Consensus 531 e~Lp~i~~KGL~L~~hn~l~~~~~~~gD~~aLrkil~lLl~YaitTT~-~GKItl~v~~~~~~~~~l~i~i~DTG~Gls~ 609 (881) T PRK10618 531 EVLPAIKRKGLQLLIHNHLKANDMRRGDRDALRKILLLLLQYAVTTTQ-YGKITLEVDQDESSEERLTFRILDTGEGVSI 609 (881) T ss_pred HHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCEEEEEEECCCCCCCH T ss_conf 876898742703332347988997047899999999999988811144-5259999825877786389999547888788 Q ss_pred HHHHHHCCCCEECCCCCC-CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 786541488376268988-88566379999999996198699997889943999997347 Q gi|255764476|r 733 DMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 733 e~~~riF~~F~~~~~~~~-~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) ..++.+=-||-.-....+ ..++||-+.+|+.++..+||+..+.|.++-||++++++|.. T Consensus 610 ~El~Nl~~PFl~~t~~Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y~i~lp~~ 669 (881) T PRK10618 610 HEIDNLHFPFLNQTQGDRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRYSVHLKML 669 (881) T ss_pred HHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCC T ss_conf 888553797768312211137887299999999998489678841567766479984267 No 47 >PRK11359 cAMP phosphodiesterase; Provisional Probab=99.89 E-value=4.3e-20 Score=155.53 Aligned_cols=226 Identities=13% Similarity=0.139 Sum_probs=155.7 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHH-----HHHHHHHHCCCCCE Q ss_conf 9999999999998516800589815992898525789873677877566101585338967-----89999861257870 Q gi|255764476|r 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKN 261 (792) Q Consensus 187 ~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~-----~~~~~~~~~~~~~~ 261 (792) +...++..||++++.+|.+|++.|.+|+|++||+||++++ ||+.++.++.....+.+. ..+........+.. T Consensus 6 ~~~~~~~~fr~~lE~s~~GIviiD~~GrIv~~N~aa~~l~---GYs~eEllG~~~~~L~p~d~~~~~~~~l~~~~~~g~~ 82 (799) T PRK11359 6 ADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLW---GYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKA 82 (799) T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHH---CCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCC T ss_conf 1345479999999618854999969990998718999987---9299998599889927853331239999987742655 Q ss_pred -----EEEEEEEEECCEEEEEEEEEEECCC-C---EEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEC Q ss_conf -----3457888656907899999763289-5---299983045899988788999999843089599984898089853 Q gi|255764476|r 262 -----FCETVSTLEHGNNKSYKIVRVLNSF-G---EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332 (792) Q Consensus 262 -----~~~~~~~~~~G~rr~~~v~~~~~~~-G---~~Gia~DITErk~ae~aLrr~~e~Ld~l~~~v~ifd~~~rl~~~N 332 (792) ..+......+|...|.+++..|... | .+++..|||++++.+++.++....+++++.+|+++|.++++.++| T Consensus 83 ~~~g~~~E~~~~RKDGs~~~velsvs~i~~~g~i~~l~ivrDITee~a~~e~~r~l~~~ld~~~~~I~i~D~~g~i~~vN 162 (799) T PRK11359 83 RVEGMSRELQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCN 162 (799) T ss_pred CCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEC T ss_conf 44564048999858888999999997764799289999999768999999999999999862687299991898789987 Q ss_pred HHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHCCCC--CCEEEECCCCCEEEE--EEEE Q ss_conf 68885509997896049987999998975477766465--78899999987624676--502688789818999--9735 Q gi|255764476|r 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSET--HKDTWHLPNGQTLHV--IVTS 406 (792) Q Consensus 333 ~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d--~~~w~~~~~~~~~~~~~--~~~~w~l~DGr~l~v--~~~~ 406 (792) ++|+++|||.++.+.+++... ++ ..|+.++ +..+.. ....... .+.....+||+.+++ ...| T Consensus 163 ~a~~el~Gy~~eEl~G~~~~~-ll-------~~pe~~~~~~~~~~~----~l~~~~~~~~E~~~~~kdG~~~wv~~s~~p 230 (799) T PRK11359 163 RAFTEMFGYCISEASGMQPDT-LL-------NIPEFPADNRIRLQQ----LLWKTARDQDEFLLLTRTGEKIWIKASISP 230 (799) T ss_pred HHHHHHHCCCHHHHCCCCHHH-HH-------CCCCCCHHHHHHHHH----HHHCCCCCEEEEEEECCCCCEEEEEEEEEE T ss_conf 789998599878974898899-83-------487884799999999----986489730589998269979999989889 Q ss_pred --CCCC---CEEEEECCHHHHHHHHH Q ss_conf --6998---68999459579999999 Q gi|255764476|r 407 --NPRG---GTIWMFENLTVQVDLET 427 (792) Q Consensus 407 --~p~G---g~~~~~~DITE~~~le~ 427 (792) +.+| +++.++.||||++++++ T Consensus 231 i~d~~g~~~~~v~i~~DITErr~~~~ 256 (799) T PRK11359 231 VYDVLAHLQNLVMTFSDITEERQIRQ 256 (799) T ss_pred EECCCCCEEEEEEEEEECCHHHHHHH T ss_conf 98488988899999973158889999 No 48 >PRK13559 hypothetical protein; Provisional Probab=99.89 E-value=2.3e-18 Score=143.63 Aligned_cols=298 Identities=15% Similarity=0.187 Sum_probs=192.9 Q ss_pred HHHHHHHCCCCEEEECC---CCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC Q ss_conf 99999620343289968---984886405888782898789438983889887776302561146889987402654431 Q gi|255764476|r 436 QGETIDHLSEGVAVFGP---DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512 (792) Q Consensus 436 q~~~ld~l~e~vav~~~---dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~ 512 (792) ..+.+.+..-++.+.++ |.-|+|+|++|++|+||+.+++.++. +.-+. ..-.++..-..++..+..-.+ . T Consensus 47 ~~~a~~~~r~a~~itd~~~~d~PIiy~N~aF~~lTGYs~~EviGrn-crfLq----Gp~t~~~~v~~ir~ai~~~~~--~ 119 (363) T PRK13559 47 FEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRN-CRFLQ----GAGTDPAAVAKIRAAIAAERV--V 119 (363) T ss_pred HHHHHHHCCCCEEEECCCCCCCCEEEECHHHHHHHCCCHHHHCCCC-CHHCC----CCCCCHHHHHHHHHHHHCCCC--E T ss_conf 9999974774389968999999889988799976398979984999-24108----999998999999999983994--6 Q ss_pred EEEEEEEECCEEEEE--EEEEECCCC--CEE---EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 156899972503888--999970588--766---3123206899998888999999999999999999996666322589 Q gi|255764476|r 513 SLQGTLELLSDSVLE--YSIIPLPNA--QTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 (792) Q Consensus 513 ~~~~~~~~~dG~~~~--~~~~pl~dg--~~l---~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt 585 (792) ..+..-.+|||+.++ +...|+.|. ... .+..||||.++.+.+.. . +..++.-|.|-.+|-|. T Consensus 120 ~~el~nyrKDGs~fwn~l~isPV~D~~G~v~~fig~q~DvTd~~~~~a~e~--------~---~~~LlrEl~HRVKN~La 188 (363) T PRK13559 120 VVELLNYRKDGSPFWNALHLGPIYDEDGKLLYFFGSQWDVTDIRAVRALEA--------H---ERRLAREVDHRSKNVFA 188 (363) T ss_pred EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHH--------H---HHHHHHHHHHHHHHHHH T ss_conf 999999826998247768988879899979999999985155420455899--------9---99999998887661999 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH Q ss_conf 99999999735777889989999999999999999999--9999999885149830002330699999999999999998 Q gi|255764476|r 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL--VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 (792) Q Consensus 586 ~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~l--i~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~ 663 (792) .|.+++.+-... .+. .++.+.+.. |+..| +.+.| ++ .-..+.+++.+++...+.-+. T Consensus 189 vV~Si~rlq~R~----~~~--~~~~~~l~~---RI~ALa~aH~~L-l~-------~~~~~~v~l~~ll~~~l~~~~---- 247 (363) T PRK13559 189 VVDSIVRLTGRA----DDA--SLYAAAIQE---RVQALARAHETL-LD-------ERGWETVEVEELIRAQVAPYA---- 247 (363) T ss_pred HHHHHHHHHCCC----CCH--HHHHHHHHH---HHHHHHHHHHHH-HC-------CCCCCCEEHHHHHHHHHHHCC---- T ss_conf 999999965347----984--999999999---999999999998-65-------777662329999999998507---- Q ss_pred HCCCEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEE--EECCEEEEEEEECCCCCCHHHHHH Q ss_conf 489689999569860899-878999999999988677538---88688999999--879989999997889789778654 Q gi|255764476|r 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS---SKGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKS 737 (792) Q Consensus 664 ~~~i~l~~~~~~~~~~v~-~D~~rL~QVl~NLl~NAik~~---~~gg~I~i~~~--~~~~~v~i~V~D~G~GI~~e~~~r 737 (792) ..+.++.++.+ ++ .+. -....|.=||.-|++||+||. .++|+|.|+.. ..++.+.+.+.|+|.+.++. T Consensus 248 ~~~~ri~~~gp-~v-~l~~~~A~~L~LilhELaTNA~KyGals~~~G~V~V~w~~~~~~~~l~l~W~E~Ggp~v~~---- 321 (363) T PRK13559 248 PRGTRVAFEGP-GI-RLGAASVQPLGLVLHELAVNAIKHGALSADAGRISISWRPSREGGGLVLDWQEQGGPTPPK---- 321 (363) T ss_pred CCCCEEEEECC-CE-EECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCC---- T ss_conf 88866999889-75-6868887789999999987088735667899779999998178987999997789999989---- Q ss_pred HCCCCEECCCCCCCCCCCHHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 1488376268988885663799999999-961986999978899439999973479 Q gi|255764476|r 738 VFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 738 iF~~F~~~~~~~~~~GtGLGLsiv~~iV-e~hgG~I~v~S~~G~Gttf~v~lP~~e 792 (792) + ...|+|.-|+.+.| ...||+|.++=.+ .|+.+++++|..| T Consensus 322 ---------p----~~~GFGs~LI~~~v~~qL~G~v~~~~~~-~Gl~~~i~~Plrq 363 (363) T PRK13559 322 ---------L----QKRGFGTVIISAMVESQLKGQIEKDWAD-DGLLARIEIPVRQ 363 (363) T ss_pred ---------C----CCCCCHHHHHHHHHHHHCCCEEEEEECC-CEEEEEEEEECCC T ss_conf ---------9----9998569999999898759879999879-9089999996689 No 49 >KOG0519 consensus Probab=99.88 E-value=5.8e-24 Score=182.01 Aligned_cols=233 Identities=27% Similarity=0.297 Sum_probs=194.1 Q ss_pred HHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8889999999---999999999--99996666322589999999997357778899899999999999999999999999 Q gi|255764476|r 553 RALTEKNEAL---RKADEIKNS--FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 (792) Q Consensus 553 ~aL~e~~eal---e~a~~lk~~--F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~di 627 (792) ..+.+.++.+ +++.-++++ |.+++|||||+||+. |+..++-++ .++..+..|...+..++..++.+++++ T Consensus 200 ~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~~~t---~~~~~~~~~~~~~~~~~~~~~s~ln~i 274 (786) T KOG0519 200 TTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GMLGGLSDT---DLDSDQRLILNTDRVSAKSLLSLLNDI 274 (786) T ss_pred HHHHHHHHHHCCCCCHHCCCCCHHCCCCCCCEEECCCCC--CCCCEEECC---CCCHHHHHHHCCCHHHHHCHHHHHHHH T ss_conf 655212566512530002742011134456324434445--664122034---421568987430012200001377776 Q ss_pred HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999885149830002330699999999999999998489689999569860-8998789999999999886775388868 Q gi|255764476|r 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706 (792) Q Consensus 628 Ldls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~D~~rL~QVl~NLl~NAik~~~~gg 706 (792) +|.+++++|.+++.-.+||+..+++.+...+.+.+..+++.+....+.+.| .+.+|+.+++||+.|+++||+||+..|. T Consensus 275 ~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~ 354 (786) T KOG0519 275 LDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGH 354 (786) T ss_pred HHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC T ss_conf 40113532355403223452666677787766655136734652078777642035610110003332014435444662 Q ss_pred EEEEEEEEE---------------------------------C---------------CEEEEEEEECCCCCCHHHHHH- Q ss_conf 899999987---------------------------------9---------------989999997889789778654- Q gi|255764476|r 707 TVILKAARD---------------------------------N---------------GDFIFSVKNNGSSIPEDMCKS- 737 (792) Q Consensus 707 ~I~i~~~~~---------------------------------~---------------~~v~i~V~D~G~GI~~e~~~r- 737 (792) |.+++... + -.-.+.+.|+|.||+...... T Consensus 355 -i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 433 (786) T KOG0519 355 -LEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSN 433 (786) T ss_pred -EEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCHH T ss_conf -2466651211004678997545776535155667888741331242204212235766520223666406850233046 Q ss_pred HCCCCEECCC--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 1488376268--98888566379999999996198699997889943999997347 Q gi|255764476|r 738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 738 iF~~F~~~~~--~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) +|.+|-+... ...++|+|+|++++++++++++|.+.+.+.++.|++|++.+|.. T Consensus 434 ~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~ 489 (786) T KOG0519 434 VFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLL 489 (786) T ss_pred HHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 55545146610034568764533222328899886743211003475222331235 No 50 >PRK10547 chemotaxis protein CheA; Provisional Probab=99.86 E-value=3.5e-19 Score=149.29 Aligned_cols=162 Identities=19% Similarity=0.381 Sum_probs=122.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCEEEECHHH---HHHHH Q ss_conf 999999999999998851498300023306999999999999999984--8968999956986089987899---99999 Q gi|255764476|r 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQR---LLQIF 691 (792) Q Consensus 617 ~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~--~~i~l~~~~~~~~~~v~~D~~r---L~QVl 691 (792) ...+..+++++-+ +.|.+.. +.+..+....-..++..+++ |.|.|.+. .. .+..|..= |.--| T Consensus 315 ~~~l~r~~~dLq~------~vm~~RM--vP~~~lf~r~~R~VRdlar~~gK~V~L~i~--G~--dtelDr~Ile~L~dPL 382 (662) T PRK10547 315 MGQLQRNARDLQE------SVMSIRM--MPMEYVFSRFPRLVRDLAGKLGKQVELTLV--GS--STELDKSLIERIIDPL 382 (662) T ss_pred HHHHHHHHHHHHH------HHHHHCC--EEHHHHHHHHHHHHHHHHHHHCCEEEEEEE--CC--CEEEHHHHHHHHHHHH T ss_conf 9999999999999------9998625--218998888789999999986982599996--68--6777199999888799 Q ss_pred HHHHHHHHHCC------------CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH---------------------HHH Q ss_conf 99988677538------------886889999998799899999978897897786---------------------541 Q gi|255764476|r 692 SKILSNAMDFS------------SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC---------------------KSV 738 (792) Q Consensus 692 ~NLl~NAik~~------------~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~---------------------~ri 738 (792) ++||-||++|. |+-|+|+|++.+.++.+.|+|+|.|.||+++.. +=| T Consensus 383 ~HLlRNAvDHGIE~peeR~a~GKp~~G~I~l~a~~~g~~v~I~v~DDGrGiD~e~Ir~kAv~kGL~~~e~lsd~e~~~LI 462 (662) T PRK10547 383 THLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDDEVGMLI 462 (662) T ss_pred HHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 99987424304899889987599972799999998599999999818999899999999998499985338999999997 Q ss_pred CCC-CEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 488-3762689888856637999999999619869999788994399999734 Q gi|255764476|r 739 FNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 739 F~~-F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) |.| |.|....+...|-|.||-+||+-|+..||+|.|+|++|+||+|+++||. T Consensus 463 F~PGFSTa~~Vt~lSGRGVGmDVV~~~v~~l~G~v~v~S~~G~GT~F~l~lPl 515 (662) T PRK10547 463 FAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPL 515 (662) T ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC T ss_conf 17998623223568886646899999999829989999608980799997887 No 51 >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Probab=99.84 E-value=1.2e-18 Score=145.54 Aligned_cols=167 Identities=20% Similarity=0.382 Sum_probs=122.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCEEEECHHHHHH Q ss_conf 99999999999999999998851498300023306999999999999999984--8968999956986089987899999 Q gi|255764476|r 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQ 689 (792) Q Consensus 612 ~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~--~~i~l~~~~~~~~~~v~~D~~rL~Q 689 (792) ........+..++.++-|- -|..... .+..+....-.++++.+.+ |.|+|.+.- . ...-|..=|.+ T Consensus 365 el~~~~~~l~~~~~~LQd~------vm~~RMv--P~~~vf~RfpR~VRdla~~lgK~V~L~ieG--~--~telDksIlE~ 432 (716) T COG0643 365 ELDEALRQLSRLTTDLQDE------VMKIRMV--PFEQVFSRFPRMVRDLARKLGKQVELVIEG--E--DTELDKSILER 432 (716) T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHCE--EHHHHHHHCCHHHHHHHHHHCCEEEEEEEC--C--CEEEHHHHHHH T ss_conf 9999999999999999999------9997000--399987444099999999869916999964--8--71342989988 Q ss_pred H---HHHHHHHHHHCC------------CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH------------------- Q ss_conf 9---999988677538------------886889999998799899999978897897786------------------- Q gi|255764476|r 690 I---FSKILSNAMDFS------------SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC------------------- 735 (792) Q Consensus 690 V---l~NLl~NAik~~------------~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~------------------- 735 (792) + |.+|+-||++|. |+-|+|++++...++.++|.|+|.|.||.++.+ T Consensus 433 l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lS 512 (716) T COG0643 433 LGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLS 512 (716) T ss_pred HCCCHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCC T ss_conf 64669988850011058988999875989863699999837986999995689987999999999982998867752079 Q ss_pred -----HHHCCC-CEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf -----541488-3762689888856637999999999619869999788994399999734 Q gi|255764476|r 736 -----KSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 736 -----~riF~~-F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) .-||.| |.|..+.+.-.|-|.||=+||+-|+..||+|.|+|++|+||||++.||- T Consensus 513 d~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPL 573 (716) T COG0643 513 DEEILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL 573 (716) T ss_pred HHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC T ss_conf 9999988736998734111016577657899999999739989999627897699996687 No 52 >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Probab=99.83 E-value=5.6e-17 Score=134.16 Aligned_cols=190 Identities=23% Similarity=0.323 Sum_probs=128.6 Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHH Q ss_conf 996666322589999999----9973577788-99899999999999999999999999999885149830002330699 Q gi|255764476|r 574 QHVSYELRSPLTNIIGFT----DLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 (792) Q Consensus 574 ~~vSHELrtPLt~I~G~a----~lL~~~~~g~-l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~ 648 (792) +.+++||-.+|.-.+.|. ++|+.....+ -.++..+-+..|.+.......-+..+|.--| +...+.++. T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fR-------l~l~~~~L~ 438 (568) T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFR-------LTIQEANLG 438 (568) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCHH T ss_conf 8999984412665789999999999987422565388999999999999999999999999832-------267756879 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHH---HHHHHHHHHHHHHHCCCCCCEEEEEEEEE-CCEEEEEEE Q ss_conf 99999999999999848968999956986089987899---99999999886775388868899999987-998999999 Q gi|255764476|r 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR---LLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVK 724 (792) Q Consensus 649 ~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~r---L~QVl~NLl~NAik~~~~gg~I~i~~~~~-~~~v~i~V~ 724 (792) ..++..++.++. ..++.+.+++. +|...-|+.+ +-||+.+.|+|++||+. ++.|+|++... ++.+.++|+ T Consensus 439 ~AL~~~~~~~~~---q~~~~i~l~~~--l~~~~l~~~~~i~llrIvqEALtN~~KHA~-A~~V~V~~~~~~~~~v~l~V~ 512 (568) T PRK10935 439 SALEEMLDQLRN---QTSAKITLDCR--LPSQALDAQQQVHLLQIIREATLNAIKHAN-ASEIAVSCVTNPDGEVTVSIR 512 (568) T ss_pred HHHHHHHHHHHH---HCCCEEEEECC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCEEEEEEE T ss_conf 999999999975---11946999706--887778888999999999999999998089-987999999748987999997 Q ss_pred ECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 78897897786541488376268988885663799999999961986999978899439999973479 Q gi|255764476|r 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 725 D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e 792 (792) |||+||++... .+.+.||.|.+.-++..||++.++|.||+||+++++||..+ T Consensus 513 DnG~Gf~~~~~----------------~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~~~ 564 (568) T PRK10935 513 DDGVGIGELKE----------------PEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPSQQ 564 (568) T ss_pred ECCCCCCCCCC----------------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCC T ss_conf 79947898788----------------89985759999999966998999977999669999858988 No 53 >PRK10600 nitrate/nitrite sensor protein NarX; Provisional Probab=99.72 E-value=7.5e-14 Score=112.75 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=134.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHH Q ss_conf 63225899999999973577788998999999999999999999999999998851498300023306999999999999 Q gi|255764476|r 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 (792) Q Consensus 579 ELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~ 658 (792) .|-..|+.+.-.+++|+... +...+..++.++.|.+.......-+..+|.--|. ...+-++...+...+..+ T Consensus 372 slaQ~Ls~Lkiq~~~l~~~~-~~~~~~~~~~l~~i~~~~~~a~~~lReLl~~fR~-------~l~~~~l~~aL~~~i~~~ 443 (569) T PRK10600 372 SIAQSLSCMKMQVSCLQMQG-DALPESSRELLSQIRNELNASWAQLRELLTTFRL-------QLTEPGLRPALEASCEEF 443 (569) T ss_pred HHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHHHHHHHHHHHH T ss_conf 87222789999999999730-5798889999999999999999999999998355-------777566799999999999 Q ss_pred HHHHHHCCCEEEEEECCCCCEEEE-CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHH Q ss_conf 999984896899995698608998-7899999999998867753888688999999879989999997889789778654 Q gi|255764476|r 659 ATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 (792) Q Consensus 659 ~~~~~~~~i~l~~~~~~~~~~v~~-D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~r 737 (792) +. ..++.+.+++......+.. ....+-||+..-|+|++||+... .|+|++...++.+.++|+|+|+|||++. T Consensus 444 ~~---~~g~~i~l~~~~~~~~l~~~~~i~l~rIvqEALsNv~KHA~A~-~v~V~l~~~~~~~~l~I~DdG~Gf~~~~--- 516 (569) T PRK10600 444 SA---RFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQAS-EVVVTVAQNDNQVKLSVQDNGCGVPENA--- 516 (569) T ss_pred HH---HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCCEEEEEEEECCCCCCCCC--- T ss_conf 97---6097799995588667987899999999999999999708998-7999999769989999988998989888--- Q ss_pred HCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 148837626898888566379999999996198699997889943999997347 Q gi|255764476|r 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 738 iF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) . ++.+.||.|-+.=++..||++.+.|.||+||+++++||-+ T Consensus 517 -----------~--~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~f~P~ 557 (569) T PRK10600 517 -----------E--RSNHYGLIIMRDRAQSLRGDCSVRRRESGGTEVVVTFIPE 557 (569) T ss_pred -----------C--CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCC T ss_conf -----------8--8999781599999997699899986699958999997589 No 54 >PRK11091 aerobic respiration control sensor protein ArcB; Provisional Probab=99.70 E-value=9.4e-16 Score=125.79 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=105.6 Q ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHH Q ss_conf 010689999999999999999999999998516800589815992898525789873677877566101585-3389678 Q gi|255764476|r 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI 248 (792) Q Consensus 170 d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~ 248 (792) .+..++.|+.++++.+.+|.+....||+++|++|++||++|++|++.-||+||+..++ .+.++.++... ++++++. T Consensus 132 ~~~~l~~e~~~r~~~q~~l~~~~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~G---~~e~eliG~t~~d~~~~e~ 208 (779) T PRK11091 132 AFEDLKNEIKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTG---KSEKQLVGLTPKDVYSPEA 208 (779) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHC---CCHHHHCCCCHHHHCCHHH T ss_conf 9999999999989999999998899998850287515787798765341099998809---9989984998355279988 Q ss_pred HHHH----HHHCCCCCEEE-EEEEEEECCEEEEEEEEEEECCC------CEEEEEEEHHHHHHHHHHHHH Q ss_conf 9999----86125787034-57888656907899999763289------529998304589998878899 Q gi|255764476|r 249 KKRM----ISSSALEKNFC-ETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTH 307 (792) Q Consensus 249 ~~~~----~~~~~~~~~~~-~~~~~~~~G~rr~~~v~~~~~~~------G~~Gia~DITErk~ae~aLrr 307 (792) .+.+ ......+.+.. +......+|.+.+|++.++|..+ |.+|+++||||||++|++|++ T Consensus 209 a~~~~~~D~~v~~~~~~~~~e~w~~~~dG~~~~~e~~k~P~~d~~g~~~G~~g~~rDITerk~aeeaLE~ 278 (779) T PRK11091 209 AEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEK 278 (779) T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHH T ss_conf 9999973899986479821113466489866789986401353899788786300160177899999999 No 55 >PRK11644 sensory histidine kinase UhpB; Provisional Probab=99.69 E-value=8.3e-14 Score=112.44 Aligned_cols=183 Identities=16% Similarity=0.286 Sum_probs=131.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHH Q ss_conf 63225899999999973577788998999999999999999999999999998851498300023306999999999999 Q gi|255764476|r 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 (792) Q Consensus 579 ELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~ 658 (792) |+-.-||+|.-.+.+++... +.++..++..+.|.+.+.++.+-+.+++. ++. +-...+..+.+.++..+... T Consensus 314 EiGQ~LTAIr~~a~~i~r~~--~~~~~~~~~a~~I~~l~~~i~~~vR~ll~--~LR----P~~LDdLGL~~AL~~Lv~e~ 385 (497) T PRK11644 314 EIGQTITAIRTQASIVKRLA--ADNASVKQSGQLIEQLSLGVYDAVRRLLG--RLR----PRQLDDLTLEQAIRSLMREL 385 (497) T ss_pred HHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC----CCCHHHCCHHHHHHHHHHHH T ss_conf 34059999999999986326--99766899999999999999999999998--609----03111248999999999987 Q ss_pred HHHHHHCCCEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHH Q ss_conf 99998489689999569860899-87899999999998867753888688999999879989999997889789778654 Q gi|255764476|r 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 (792) Q Consensus 659 ~~~~~~~~i~l~~~~~~~~~~v~-~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~r 737 (792) + .+..++.+.+++..+...+. .-..-+-.|..--++|++||+... .|+|+....++.+.+.|+|||+|++++.. T Consensus 386 ~--~~~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~KHA~A~-~V~I~L~~~~~~l~L~I~DDG~Gf~~~~~-- 460 (497) T PRK11644 386 E--LEDRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIVKHADAS-AVTIQGWQQDERLMLVIEDNGSGLPPGSG-- 460 (497) T ss_pred H--HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCCEEEEEEEECCCCCCCCCC-- T ss_conf 6--525795599982687667982468899999999999999737887-69999997699899999889989898989-- Q ss_pred HCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 148837626898888566379999999996198699997889943999997347 Q gi|255764476|r 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 738 iF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) ..|+||.=-|.=|+..||+..++|.+ ||+++|++|.. T Consensus 461 ---------------~~G~GL~GMrERV~aLGG~l~I~S~~--GT~I~V~LP~~ 497 (497) T PRK11644 461 ---------------QQGFGLRGMQERVSALGGTLTISCTH--GTRLSVTLPQR 497 (497) T ss_pred ---------------CCCCCCHHHHHHHHHCCCEEEEEECC--CCEEEEECCCC T ss_conf ---------------99989267999999749979998289--97799958999 No 56 >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Probab=99.69 E-value=6.9e-14 Score=113.02 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=124.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 99999999999996666322589999999997357778899899999999999999999999999999885149830002 Q gi|255764476|r 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 (792) Q Consensus 563 e~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~ 642 (792) ++-+|+..|.=-.++|. |++|.-..++... ...+-.++.++.++.+.+-.+..+ +++..+-. .|.+ T Consensus 169 ~ER~RIARdLHDsv~q~----L~~i~m~~~~~~~-~~~~~~e~~~~~l~~i~~~~~e~l---~evR~~v~------~Lrp 234 (365) T COG4585 169 EERNRIARDLHDSVGQS----LTAISMLLALLLL-LADEDAEKAQEELKEIEKLLREAL---QEVRALVR------DLRP 234 (365) T ss_pred HHHHHHHHHHCCHHHHH----HHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHH------HCCC T ss_conf 89999889850668799----9999999999887-212684889999999999999999---99999999------7197 Q ss_pred EEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEE Q ss_conf 33069999999999999999848968999956986089-98789999999999886775388868899999987998999 Q gi|255764476|r 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 (792) Q Consensus 643 ~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v-~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i 721 (792) .+.+-..++......+...-...+++......+..+.+ ..-..-+-.++.--++||+||+..- +|.|+....++.+++ T Consensus 235 ~~l~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~-~v~V~l~~~~~~l~l 313 (365) T COG4585 235 VELEGLGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQAT-EVRVTLERTDDELRL 313 (365) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCCEEEE T ss_conf 3221211799999999998775083788615764467996899999999999998998757845-699999982988999 Q ss_pred EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 999788978977865414883762689888856637999999999619869999788994399999734 Q gi|255764476|r 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) +|.|||.|.+++... .|+||.=-|.=|+..||+++++|.||+||++++++|. T Consensus 314 ~V~DnG~Gf~~~~~~-----------------~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365) T COG4585 314 EVIDNGVGFDPDKEG-----------------GGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365) T ss_pred EEEECCCCCCCCCCC-----------------CCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC T ss_conf 999899788976457-----------------7766766999999869989998559997799999509 No 57 >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes.. Probab=99.69 E-value=1.2e-15 Score=125.03 Aligned_cols=196 Identities=15% Similarity=0.202 Sum_probs=108.5 Q ss_pred HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHH----------HHHH Q ss_conf 999998430895999848980898536888550999789604998799999897547776646578----------8999 Q gi|255764476|r 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK----------TWKE 376 (792) Q Consensus 307 r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~----------~w~~ 376 (792) -+++++||.|.+|-|.|-.-.+.|+|+||.++.||..+...|+-+ .+| +.+..|... |. .|.. T Consensus 5 ~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNE--S~L----Sn~tTPpeV-YQaLWg~la~qkPW~G 77 (496) T TIGR02938 5 LYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNE--SVL----SNRTTPPEV-YQALWGSLAEQKPWAG 77 (496) T ss_pred HHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCC----CCCCCCHHH-HHHHHHHHHHCCCCCC T ss_conf 688866228803643101456999956632155865621112554--012----685887179-9999988630589865 Q ss_pred HHHHHHHCCCCCCEEEECCCCCEE--EEEEEE--CCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 999876246765026887898189--999735--69986899---94595799999999999999999999620343289 Q gi|255764476|r 377 NIFSVYKSSETHKDTWHLPNGQTL--HVIVTS--NPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449 (792) Q Consensus 377 ~~~~~~~~~~~~~~~w~l~DGr~l--~v~~~~--~p~Gg~~~---~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav 449 (792) .++.+. .||+-+ .....| +.-|..++ .-+||||...||++.+...-.-..+.++.+.+.++ T Consensus 78 ~LlNRr------------kDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vl 145 (496) T TIGR02938 78 KLLNRR------------KDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVL 145 (496) T ss_pred CEECCC------------CCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE T ss_conf 100001------------16530022202020001468815873254543578899888976467899998786541000 Q ss_pred ECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEE---EE Q ss_conf 968984886405888782898789438983889887776302561146889987402654431156899972503---88 Q gi|255764476|r 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VL 526 (792) Q Consensus 450 ~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~---~~ 526 (792) +|.+||+.+.|+.|++|- .|.-...| -..+....++.. .+.|..+-..-..+ ...+.++.+.-|+ |+ T Consensus 146 lD~~gRv~LdN~~yk~La---~DL~v~ep-a~~~l~lLre~~--~e~~~~~~~q~~af----sn~E~rfD~ggGR~~RWl 215 (496) T TIGR02938 146 LDEQGRVVLDNLEYKKLA---SDLKVEEP-AELLLKLLREEL--AEDLEELENQEKAF----SNKELRFDRGGGRSARWL 215 (496) T ss_pred ECCCCCEEECCHHHHHHH---HHCCCCCC-HHHHHHHHHHHH--HHHHHHHCCCCCEE----CCCEEEEECCCCCCCCCE T ss_conf 569986881677688787---42141441-799999850876--52786520211010----154035416887885010 Q ss_pred EEEEE Q ss_conf 89999 Q gi|255764476|r 527 EYSII 531 (792) Q Consensus 527 ~~~~~ 531 (792) +|.+. T Consensus 216 Sc~g~ 220 (496) T TIGR02938 216 SCAGR 220 (496) T ss_pred EECCC T ss_conf 20232 No 58 >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Probab=99.64 E-value=1.1e-12 Score=104.67 Aligned_cols=207 Identities=19% Similarity=0.275 Sum_probs=142.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 32068999988889999999999999999999966663225899999999973577788998999999999999999999 Q gi|255764476|r 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 (792) Q Consensus 543 ~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~ 622 (792) .|+|+++..|+.+.+. .|.-++.-+.|-+.|-|..|...+.+-..... ++ -. +....+..|+.. T Consensus 2 ~~~~~~~~~e~~~~~~---------~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~---~~-~~---e~~~~~~~Ri~s 65 (221) T COG3920 2 LLTTARKETEERLAES---------EKELLLREIHHRVKNNLQIISSLLRLQARKFE---DE-VL---EALRESQNRIQS 65 (221) T ss_pred CHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CH-HH---HHHHHHHHHHHH T ss_conf 0478888899999999---------89999999999988799999999997775236---67-89---999999889999 Q ss_pred --HHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHH Q ss_conf --99999999885149830002330699999999999999998489689999569860899-878999999999988677 Q gi|255764476|r 623 --LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699 (792) Q Consensus 623 --li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~-~D~~rL~QVl~NLl~NAi 699 (792) ++.+.|--+ ....++...+++.+...+.+....+.+.+..+..+.+ .+. --..-|.=|+.-|++||+ T Consensus 66 la~~He~L~~s---------~~~~~~~~~y~~~L~~~l~~~~~~~~~~~~~~~~~~~-~l~~d~A~~Lgliv~EL~tNa~ 135 (221) T COG3920 66 LALIHELLYKS---------GDDTWDFASYLELLASNLFPSYGGKDIRLILDSGPNV-FLDPDTAVPLGLIVHELVTNAL 135 (221) T ss_pred HHHHHHHHCCC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCE-EECHHHHHHHHHHHHHHHHHHH T ss_conf 99999998068---------8651759999999999988762788752788228862-2673678899999999999889 Q ss_pred HCCC---CCCEEEEEEEEECCE--EEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHH-HHCCCEEE Q ss_conf 5388---868899999987998--99999978897897786541488376268988885663799999999-96198699 Q gi|255764476|r 700 DFSS---KGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVS 773 (792) Q Consensus 700 k~~~---~gg~I~i~~~~~~~~--v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iV-e~hgG~I~ 773 (792) ||.- ++|.|.|...+.++. ..+.|+|+|.|+|.+.- + ...|+|+.+|+.+| ++-||.+. T Consensus 136 Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~~------~---------~~~g~G~~Lv~~lv~~q~~g~~~ 200 (221) T COG3920 136 KHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEAP------L---------SRGGFGLQLVERLVPEQLGGELE 200 (221) T ss_pred HHCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCC------C---------CCCCCHHHHHHHHHHHHCCCEEE T ss_conf 86178889977999999847997179999878989888888------7---------89983799999999996797279 Q ss_pred EEEECCCCEEEEEEEECCC Q ss_conf 9978899439999973479 Q gi|255764476|r 774 ISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 774 v~S~~G~Gttf~v~lP~~e 792 (792) ..+.. ||+|+++||..+ T Consensus 201 ~~~~~--Gt~~~i~~~~~~ 217 (221) T COG3920 201 DERPD--GTEFRLRFPLSE 217 (221) T ss_pred EECCC--CEEEEEEEECCC T ss_conf 97499--779999988644 No 59 >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Probab=99.60 E-value=3e-12 Score=101.76 Aligned_cols=185 Identities=22% Similarity=0.277 Sum_probs=118.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHH Q ss_conf 99966663225899999999973577788998999999999999999999999999998851498300023306999999 Q gi|255764476|r 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 (792) Q Consensus 573 ~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~ 652 (792) .....|.|.|-|++|.++++.-. +.+..+.+...++-+ + .+++..+ +. +++..=+. T Consensus 263 sqi~pHfL~NtL~~I~~~~~~~~----------~~~~~~~v~~l~~ll----R--~~l~~~~------~~--~~l~~E~~ 318 (456) T COG2972 263 SQINPHFLYNTLETIRMLAEEDD----------PEEAAKVVKALSKLL----R--YSLSNLD------NI--VTLEIELL 318 (456) T ss_pred HCCCCHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHH----H--HHHHCCC------CC--CCHHHHHH T ss_conf 21261689999999999987357----------999999999999999----9--7500655------53--41999999 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEECCEEEEEEEECC Q ss_conf 9999999999848968999956986089-9878999999999988677538----8868899999987998999999788 Q gi|255764476|r 653 EVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFS----SKGSTVILKAARDNGDFIFSVKNNG 727 (792) Q Consensus 653 ~~~~~~~~~~~~~~i~l~~~~~~~~~~v-~~D~~rL~QVl~NLl~NAik~~----~~gg~I~i~~~~~~~~v~i~V~D~G 727 (792) -+..-+.-+-.+-+..+++..+-+.... .-||. -++.+|+.||++|. .+|+.|.+.+...++.+.++|+||| T Consensus 319 ~~~kyl~iq~~r~~~~le~~~~i~~~~~~l~~p~---l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng 395 (456) T COG2972 319 LIEKYLEIQKLRIGDRLEVPLPIDEELEPLIDPK---LVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNG 395 (456) T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCC T ss_conf 9999999998199879999720375332023278---8988879999998620469995799999405879999977699 Q ss_pred CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCE--EEEEEECCCCEEEEEEEECCC Q ss_conf 97897786541488376268988885663799999999961986--999978899439999973479 Q gi|255764476|r 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH--VSISSSDEGVTTINCRIPSKE 792 (792) Q Consensus 728 ~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~--I~v~S~~G~Gttf~v~lP~~e 792 (792) +||+++....+... +..+ .|+||+=|+...+.|-|. +.++|.+|+||++.+.+|..+ T Consensus 396 ~g~~~~~~~~~~~~-------~~~r-~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456) T COG2972 396 PGIDEEKLEGLSTK-------GENR-SGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456) T ss_pred CCCCHHHHHHHHHC-------CCCC-CCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEHHC T ss_conf 99587888667641-------5777-77358879999987189762179996489589999986301 No 60 >PRK13557 histidine kinase; Provisional Probab=99.58 E-value=7.5e-14 Score=112.76 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=97.8 Q ss_pred HHHHHHHHHHCCCCEEEEC---CCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC-----HHHHHHHHHHCCCCCEEE Q ss_conf 9999999851680058981---59928985257898736778775661015853389-----678999986125787034 Q gi|255764476|r 192 ISVFKVLFDSLDFLVWHRD---QAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFC 263 (792) Q Consensus 192 ~~~lr~llda~P~~vw~~D---~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~-----~~~~~~~~~~~~~~~~~~ 263 (792) .+.|.++++..|+|||+.| +||+|+|||+||++++ ||+.++.++++..++. ....+.++.+...+..+. T Consensus 27 ~~~~~~~v~~~~~~~~~~d~~~~Dg~I~~vN~af~~~t---GYs~eEviGk~~~~L~~p~~~~~~~~~~~~~i~~~~~~~ 103 (538) T PRK13557 27 SDIFFAAVETTRMPMIVTDPRQPDNPIVFANRAFLEMT---GYAAEEIIGNNCRFLQGPETDRATVADVRDAIAERREIA 103 (538) T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHH---CCCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEE T ss_conf 99999999607973899358999987999839999987---959999869998770898899999999999997599368 Q ss_pred EEEE-EEECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHH--HHHHHCCCCE Q ss_conf 5788-8656907899999763289--5----2999830458999887889999--9984308959 Q gi|255764476|r 264 ETVS-TLEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTY--EILHNLTVAI 319 (792) Q Consensus 264 ~~~~-~~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~--e~Ld~l~~~v 319 (792) .++. ...+|+.+|..++..|+.+ | .+|+..||||||++|++|++.. +.+.++..++ T Consensus 104 ~E~~n~rKDG~~~w~~~~i~pv~d~~G~~~~~~~i~~DITerk~~E~~L~qaqklealg~~~a~i 168 (538) T PRK13557 104 TEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQAQKMEALGQLTGGI 168 (538) T ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999879999999998999999899999999998834449999999999999999999999887 No 61 >PRK03660 anti-sigma F factor; Provisional Probab=99.57 E-value=5.4e-14 Score=113.73 Aligned_cols=100 Identities=18% Similarity=0.315 Sum_probs=84.3 Q ss_pred CHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHH Q ss_conf 78999999999988677538---886889999998799899999978897897786541488376268988885663799 Q gi|255764476|r 683 DRQRLLQIFSKILSNAMDFS---SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759 (792) Q Consensus 683 D~~rL~QVl~NLl~NAik~~---~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLs 759 (792) |-..+.-++...+.|||+|. .+++.|.|.+...++.+.|.|+|+|+||++ .++.|+||+++++... ++||||+ T Consensus 36 ~~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid~--~~~~~~P~~t~~~~~~--~~GlGl~ 111 (146) T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIED--VEEARQPLFTTKPELE--RSGMGFT 111 (146) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCC--HHHCCCCCCCCCCCCC--CCCHHHH T ss_conf 99999999999999999860367999279999998099999999973789473--7664388776687667--5640589 Q ss_pred HHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 9999999619869999788994399999734 Q gi|255764476|r 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 760 iv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) ++++++ .+|+++|.||+||||+.+-.. T Consensus 112 li~~Lm----DeVei~s~~g~GTtV~m~k~l 138 (146) T PRK03660 112 FMESFM----DEVEVESEPGKGTTIRMKKKL 138 (146) T ss_pred HHHHHC----CEEEEEECCCCCEEEEEEEEE T ss_conf 999838----869999559997899999997 No 62 >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Probab=99.56 E-value=2.3e-11 Score=95.74 Aligned_cols=179 Identities=22% Similarity=0.314 Sum_probs=132.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH Q ss_conf 89999999997357778899899999999999999999999999999885149830002330699999999999999998 Q gi|255764476|r 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 (792) Q Consensus 584 Lt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~ 663 (792) |+-..--..+|+......+.++..+.+..|..+-+-.-.-+..+|.=-| +.++.-++...++++++.++ . T Consensus 388 LS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-------ltL~e~~L~~AL~~~~~~f~---~ 457 (574) T COG3850 388 LSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-------LTLQEAELPPALEQMLAEFS---N 457 (574) T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHH---H T ss_conf 9999999999984278656687999999999999999999999999878-------76056763899999999997---3 Q ss_pred HCCCEEEEEECCCCCEEEECH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCC Q ss_conf 489689999569860899878---99999999998867753888688999999879989999997889789778654148 Q gi|255764476|r 664 ENNIRIKVISDGKLGSFVADR---QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 (792) Q Consensus 664 ~~~i~l~~~~~~~~~~v~~D~---~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~ 740 (792) ..++++++++. +|..--++ ..+-||+.-=++||+|++ .+..|.|++...++.+.++|+|||+|||+.. T Consensus 458 qtg~~~~l~~q--lp~~~lpa~qqvHlLqIvREAlsNa~KHa-~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~------ 528 (574) T COG3850 458 QTGITVTLDYQ--LPPRALPAHQQVHLLQIVREALSNAIKHA-QASEIKVTVSQNDGQVTLTVEDNGVGIDEAA------ 528 (574) T ss_pred CCCCEEEEECC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCEEEEEEEECCCCCCCCC------ T ss_conf 46973887256--89889987899999999999999899852-6675899998659648999942883779756------ Q ss_pred CCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 837626898888566379999999996198699997889943999997347 Q gi|255764476|r 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 741 ~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) ...| --||.|-+.=.+.-||...+++.+|+||++.++||-+ T Consensus 529 ---------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~~ 569 (574) T COG3850 529 ---------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPPE 569 (574) T ss_pred ---------CCCC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCC T ss_conf ---------7788-7236999999997257577764599981799995641 No 63 >COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Probab=99.50 E-value=1.8e-11 Score=96.46 Aligned_cols=171 Identities=19% Similarity=0.297 Sum_probs=115.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEECHHHHHHH Q ss_conf 9666632258999999999735777889989999999999999999999999999988514983000-233069999999 Q gi|255764476|r 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN-YSTIVLNDLLNE 653 (792) Q Consensus 575 ~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~-~~~vdl~~~i~~ 653 (792) .=+|=|=|-||+|. -+.... +++.+|. |-++-.|-|- .++.+ .+-++|.+=++. T Consensus 371 vnPHFLFNaLNTIs---a~IR~n-----pdkAreL--------------il~LS~yfR~---NL~~~~~~~v~L~kEl~~ 425 (557) T COG3275 371 VNPHFLFNALNTIS---AVIRRN-----PDKAREL--------------ILYLSTYFRY---NLENNTQEIVTLSKELEH 425 (557) T ss_pred CCHHHHHHHHHHHH---HHHCCC-----HHHHHHH--------------HHHHHHHHHH---HHCCCCCEEEEHHHHHHH T ss_conf 37088888888778---886178-----2799999--------------9999999998---734787158655999999 Q ss_pred HHHHHH---HHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEEECCEEEEEEEEC Q ss_conf 999999---99984896899995698608998789999999999886775388----86889999998799899999978 Q gi|255764476|r 654 VKQSIA---TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS----KGSTVILKAARDNGDFIFSVKNN 726 (792) Q Consensus 654 ~~~~~~---~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~----~gg~I~i~~~~~~~~v~i~V~D~ 726 (792) +-.-++ .+.. ...++.+++|+.+-.+.- |.- ++.-|+.||+|+.- ..|.|+|++.+.+.++.+.|+|| T Consensus 426 v~AYl~IEkARF~-~rL~v~i~id~~l~~~~i-P~f---ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDn 500 (557) T COG3275 426 VNAYLSIEKARFG-DRLDVVIDIDEELRQVQI-PSF---ILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDN 500 (557) T ss_pred HHHHHHHHHHHCC-CCEEEEEECCHHHHHCCC-CHH---HHHHHHHHHHHHCCCCHHCCCCEEEEEEEECCEEEEEEECC T ss_conf 9999989986448-844799946877753368-616---67788888887536444208817999998088389999418 Q ss_pred CCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEEEECC Q ss_conf 89789778654148837626898888566379999999996198---699997889943999997347 Q gi|255764476|r 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG---HVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 727 G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG---~I~v~S~~G~Gttf~v~lP~~ 791 (792) |.||+|+ ...|+|+||+.|++=+++|=| -+.++|.+..||+++|++|-. T Consensus 501 g~li~p~----------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~ 552 (557) T COG3275 501 GGLIQPD----------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQ 552 (557) T ss_pred CCCCCCC----------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCC T ss_conf 8776997----------------788987178899999998648210313786167786899994476 No 64 >pfam00512 HisKA His Kinase A (phosphoacceptor) domain. dimerization and phosphoacceptor domain of histidine kinases. Probab=99.41 E-value=8.7e-13 Score=105.45 Aligned_cols=65 Identities=45% Similarity=0.748 Sum_probs=60.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999996666322589999999997357778899899999999999999999999999999885149 Q gi|255764476|r 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 (792) Q Consensus 569 k~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG 636 (792) |++|+++|||||||||++|.|++++|.... .++++++|++.|.+++.++..+|+++|+++|+++| T Consensus 2 k~~f~~~isHelrtPL~~i~~~~~~l~~~~---~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~e~g 66 (66) T pfam00512 2 KSEFLANLSHELRTPLTAIRGYLELLLDTE---LSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66) T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 889999872987184888874889988723---27999999997689999999999999999865489 No 65 >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Probab=99.34 E-value=3.9e-09 Score=80.46 Aligned_cols=185 Identities=16% Similarity=0.273 Sum_probs=129.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH Q ss_conf 99996666322589999999997357778899899999999999999999999999999885149830002330699999 Q gi|255764476|r 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 (792) Q Consensus 572 F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i 651 (792) .+.-.--|+-.-.|+|.--+.+.+.-. + ++..+.....|.+-+-+.-.-+..+|.--| +-...+..+...+ T Consensus 306 vARELHDeIGQnITAIr~Qa~ivkR~~--~-~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai 376 (497) T COG3851 306 VARELHDEIGQNITAIRTQAGIVKRAA--D-NAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAI 376 (497) T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCCHHHHH T ss_conf 999989986460789999999998657--9-777887889999999899999999987159------7322225789999 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC----CEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECC Q ss_conf 99999999999848968999956986----08998789999999999886775388868899999987998999999788 Q gi|255764476|r 652 NEVKQSIATKMHENNIRIKVISDGKL----GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 (792) Q Consensus 652 ~~~~~~~~~~~~~~~i~l~~~~~~~~----~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G 727 (792) ...+..++ +.+.||...++...+. +..+.- |-.+...++.|-+|++. .+.|+|.....+..+.++|+||| T Consensus 377 ~~l~~Em~--~~ergihcq~~~~~n~~~ldet~rvT---LyRl~QE~LNNI~KHA~-AS~V~i~l~~~~e~l~Lei~DdG 450 (497) T COG3851 377 RSLLREME--LEERGIHCQLDWRINETALDETQRVT---LYRLCQELLNNICKHAD-ASAVTIQLWQQDERLMLEIEDDG 450 (497) T ss_pred HHHHHHHH--HHHCCEEEEEECCCCCCCCCCCEEEE---HHHHHHHHHHHHHHCCC-CCEEEEEEEECCCEEEEEEECCC T ss_conf 99999852--54456279870566766788543772---89999999999975002-26279999517818999982588 Q ss_pred CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 978977865414883762689888856637999999999619869999788994399999734 Q gi|255764476|r 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 728 ~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) +|+|+... =+|+||-=-+.=|.+.||+..++| -+||++.|.||- T Consensus 451 ~Gl~~~~~-----------------v~G~Gl~GmrERVsaLGG~l~lss--q~GTrviVnLPq 494 (497) T COG3851 451 SGLPPGSG-----------------VQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLPQ 494 (497) T ss_pred CCCCCCCC-----------------CCCCCCCHHHHHHHHHCCCEEEEE--CCCCEEEEECCH T ss_conf 67899998-----------------567572008999997478258874--368589994603 No 66 >smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases. Probab=99.23 E-value=5.5e-11 Score=93.14 Aligned_cols=65 Identities=45% Similarity=0.756 Sum_probs=59.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999996666322589999999997357778899899999999999999999999999999885149 Q gi|255764476|r 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 (792) Q Consensus 569 k~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG 636 (792) +.+|+++|||||||||++|+|++++|... .+++++.+|++.|.+++.++..+|+++|++++++.| T Consensus 2 ~~~~~~~isHelrtPL~~i~~~~~~l~~~---~~~~~~~~~~~~i~~~~~~~~~li~~il~~sr~~~~ 66 (66) T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDT---ELSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66) T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 88999997698708188899998865302---799999999998899999999999999999873699 No 67 >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Probab=99.21 E-value=5.7e-09 Score=79.33 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=122.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---HHHHHHHHHHHHH Q ss_conf 5899999999973577788998999999999999999999999999998851498300023306---9999999999999 Q gi|255764476|r 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV---LNDLLNEVKQSIA 659 (792) Q Consensus 583 PLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vd---l~~~i~~~~~~~~ 659 (792) -|-+..-..++.......| ++ .-...|.+++.+|..-|+.+..+|. .|.+..+| |...++. +++ T Consensus 265 ~LVs~k~~lela~~ql~~p---~~-~a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~---L~~ 331 (459) T COG4564 265 NLVSVKCALELAARQLNPP---KG-GAHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEA---LLE 331 (459) T ss_pred HHHHHHHHHHHHHCCCCCC---CC-CCCHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHH---HHH T ss_conf 7799999999996267799---88-8750156678999989999998502------357455544307999999---999 Q ss_pred HHHHHCCCEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHH Q ss_conf 9998489689999569860899-878999999999988677538886889999998799899999978897897786541 Q gi|255764476|r 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 (792) Q Consensus 660 ~~~~~~~i~l~~~~~~~~~~v~-~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~ri 738 (792) +.-...++.+++..+.....+. .-.+-|-.|...-++|-=+++ ..-+|+|.....++.+.+.|+|||+|++..... T Consensus 332 ~f~~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~-- 408 (459) T COG4564 332 DFKERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL-- 408 (459) T ss_pred HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCEEEEEECCCCCCCCHHHC-- T ss_conf 86436683799970578644782788899999999987788606-871799986157760699982389985616531-- Q ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC Q ss_conf 48837626898888566379999999996198699997889943999997347 Q gi|255764476|r 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792) Q Consensus 739 F~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792) . + -.||||-=-+.=++..||+..|+|.|. ||..++.||-. T Consensus 409 --------~--~--~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~ 448 (459) T COG4564 409 --------Q--K--RHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLD 448 (459) T ss_pred --------C--C--CCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEEECCH T ss_conf --------6--7--556451009999997486589975698-72799981404 No 68 >PRK10060 RNase II stability modulator; Provisional Probab=99.19 E-value=1.2e-08 Score=77.08 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=109.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCE--EEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 894678989999999985396589999868972--999830455754899874010689999999999999999999999 Q gi|255764476|r 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC--AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196 (792) Q Consensus 119 l~p~~a~~l~~ai~~l~~~g~~f~l~~~t~~g~--~i~~~Gr~~g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr 196 (792) |.|+.|.+++ .+-.--.+..+++. .-|. .++..||..-..-+.. ..........-.+.+..+.+.-. T Consensus 46 ~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~lAa 114 (663) T PRK10060 46 LSPEQAARIR----ELTGITSSLMMTLT-LFGSPLSVHLVGRKINKREWAG------TASAWHDTPSVARDLSHGLSFAE 114 (663) T ss_pred CCHHHHHHHH----HHHHEEEEEEEEEE-ECCCEEEEEEECCEECCCCCCC------CHHHHCCCHHHHHHHHHHHHHHH T ss_conf 6888999888----66410006899877-5384026898401303453353------02320383778999998879999 Q ss_pred HHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCC-----HHHHHHHHHHCCCCCEEEEEEEE-E Q ss_conf 998516800589815992898525789873677877566101585-3389-----67899998612578703457888-6 Q gi|255764476|r 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFK-----EEIKKRMISSSALEKNFCETVST-L 269 (792) Q Consensus 197 ~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~-----~~~~~~~~~~~~~~~~~~~~~~~-~ 269 (792) .+++.++++|.+.|.+|+|+.||+||.+++ ||..+++++++. .++. ...+..++.....+..|+.+++. . T Consensus 115 ~Vfe~a~egI~ItD~~~~I~~vN~af~~iT---Gy~~~eviG~n~~~l~~s~~~~~~~~~~~~~~l~~~~~w~gE~w~r~ 191 (663) T PRK10060 115 QVVSEANSVIVILDSRGNIQRFNRLCEEYT---GLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWIKT 191 (663) T ss_pred HHHHCCCCEEEEECCCCCEEEEHHHHHHHH---CCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 998545864999979999887867977886---89999918998799835755448899999999974981898888740 Q ss_pred ECCEEEEEEEEE-EECCCC-----EEEEEEEHHHHHHHHHHHHHH Q ss_conf 569078999997-632895-----299983045899988788999 Q gi|255764476|r 270 EHGNNKSYKIVR-VLNSFG-----EAGIAIDVSKEITVNDQLTHT 308 (792) Q Consensus 270 ~~G~rr~~~v~~-~~~~~G-----~~Gia~DITErk~ae~aLrr~ 308 (792) ++|++.+..... +....| .+++..||||+|++|++|+.. T Consensus 192 k~G~~~~~~~~~~v~~~~~~~~~~~i~~f~DITe~k~~ee~l~~l 236 (663) T PRK10060 192 RKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRIL 236 (663) T ss_pred CCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHH T ss_conf 589645798878776078970699999888804899999999987 No 69 >pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Probab=99.10 E-value=4e-10 Score=87.25 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=56.3 Q ss_pred HHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHH----HHHHHHHCCCCCEEEEEEEEEECCE Q ss_conf 85168005898159928985257898736778775661015853-389678----9999861257870345788865690 Q gi|255764476|r 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-LFKEEI----KKRMISSSALEKNFCETVSTLEHGN 273 (792) Q Consensus 199 lda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~G~ 273 (792) +|++|++||++|++|+++++|++|+++++ ++.++.+++... ++.+.. ..........+...........+|. T Consensus 1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g---~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 77 (110) T pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFG---LPPEELLGKTLAELLPPEDAARLERALRRALEGEEPIDFLEELLLNGE 77 (110) T ss_pred CCCCCHHHEEECCCCCEEEEEHHHHHHCC---CCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC T ss_conf 99857353799499969999347466709---898998095121006803456677789999738955886643025885 Q ss_pred EEEEEEEEEECCC------CEEEEEEEHHHHHH Q ss_conf 7899999763289------52999830458999 Q gi|255764476|r 274 NKSYKIVRVLNSF------GEAGIAIDVSKEIT 300 (792) Q Consensus 274 rr~~~v~~~~~~~------G~~Gia~DITErk~ 300 (792) .+|+.++..|+.+ |.++++.||||||+ T Consensus 78 ~~~~~~~~~pi~d~~G~~~g~v~~~~DITerKq 110 (110) T pfam08448 78 ERHYELRLTPLRDPDGEVIGVLVISRDITERRR 110 (110) T ss_pred CEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC T ss_conf 200043576689899999999999998833129 No 70 >PRK11006 phoR phosphate regulon sensor protein; Provisional Probab=99.09 E-value=1.2e-08 Score=77.09 Aligned_cols=130 Identities=16% Similarity=0.210 Sum_probs=79.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHHHHH Q ss_conf 6899999999999999999999999985168005898159928985257898736778775661015853-389678999 Q gi|255764476|r 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-LFKEEIKKR 251 (792) Q Consensus 173 ~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~~~~ 251 (792) +..+-..+.+.+.++|....++|+..++++|+.|.+.|.+|+|.|||++..++++ +..++.++.... ++..+.... T Consensus 78 ~l~~~~~~~~~~~~~l~~~~~rfr~~~ealpDavvv~d~~g~I~~~N~aAe~l~G---~~~~~~~G~~I~~Lir~p~f~~ 154 (431) T PRK11006 78 GLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLG---LRWPEDNGQNILNLLRYPEFTQ 154 (431) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHC---CCCHHHCCCCHHHHHCCHHHHH T ss_conf 9999999879999999999999999996489769999899958835699999838---9983326997789808845999 Q ss_pred HHHHCCCCCEEEEEEEEEECCEEEEEEEEEEECCCC-EEEEEEEHHHHHHHHHHHHHHHH Q ss_conf 986125787034578886569078999997632895-29998304589998878899999 Q gi|255764476|r 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG-EAGIAIDVSKEITVNDQLTHTYE 310 (792) Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~G~rr~~~v~~~~~~~G-~~Gia~DITErk~ae~aLrr~~e 310 (792) ..... .+...+.... +..+.+++...|...| ..-+++|||++++.|+..+.+.. T Consensus 155 ~~~~~----~~~~p~~~~~-~~~~~le~~~~p~~~~~~llv~rDiT~~~~lE~~R~dFvA 209 (431) T PRK11006 155 YLKTR----DFSRPLNLVL-NNGRHLEIRVMPYTEGQLLMVARDVTQMHQLEGARRNFFA 209 (431) T ss_pred HHHCC----CCCCCEEEEC-CCCCEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHH T ss_conf 98626----6557625543-8874799999773799589999856599999999999998 No 71 >KOG0787 consensus Probab=99.08 E-value=6.4e-08 Score=72.11 Aligned_cols=182 Identities=16% Similarity=0.253 Sum_probs=129.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------EEEEECHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCC Q ss_conf 9999999999999999999999998851498300------023306999999999999999984---8968999956986 Q gi|255764476|r 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKL------NYSTIVLNDLLNEVKQSIATKMHE---NNIRIKVISDGKL 677 (792) Q Consensus 607 ~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l------~~~~vdl~~~i~~~~~~~~~~~~~---~~i~l~~~~~~~~ 677 (792) +-+++.-..+--.+.-|+|+=+-+-. .|+-+- --...++..+|.++.+..+..-.. ..=++.+....++ T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414) T KOG0787 174 QYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEC--CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 99999999988999999865552002--7999876644331799999999999999999999986337970675376667 Q ss_pred CEEEECHHHHHHHHHHHHHHHHHCCC----CCC----EEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCC Q ss_conf 08998789999999999886775388----868----8999999879989999997889789778654148837626898 Q gi|255764476|r 678 GSFVADRQRLLQIFSKILSNAMDFSS----KGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 (792) Q Consensus 678 ~~v~~D~~rL~QVl~NLl~NAik~~~----~gg----~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~ 749 (792) ..-+.=|.-|.-++..|+.||..++- ..+ .|.|.+...++++.|.++|.|-|||.++.+|+|+--+++.+.. T Consensus 252 ~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~ 331 (414) T KOG0787 252 SFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAP 331 (414) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC T ss_conf 67604561899999999999999999974448888998599986388635899713789968057899986612568898 Q ss_pred --------CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf --------88856637999999999619869999788994399999734 Q gi|255764476|r 750 --------QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 750 --------~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) .-.|-|-||+|+|-..+..||.+.+.|=.|-||-+.++|-+ T Consensus 332 ~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ 380 (414) T KOG0787 332 SSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKA 380 (414) T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEECC T ss_conf 7788776766655568737999999948870578520354426899526 No 72 >PRK10060 RNase II stability modulator; Provisional Probab=99.06 E-value=6.8e-09 Score=78.80 Aligned_cols=208 Identities=16% Similarity=0.151 Sum_probs=109.8 Q ss_pred HCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE Q ss_conf 16800589815992898525789873677877566101585338967899998612578703457888656907899999 Q gi|255764476|r 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280 (792) Q Consensus 201 a~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rr~~~v~ 280 (792) ..+-|+|....|...+...+ ++ +.. ..... .+.+....+++.... -...-.+....-|+--.+.++ T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-----~~--~~~----~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 80 (663) T PRK10060 15 GTHSPYWRLAEDSNVLELSA-----TE--ETE----TNVTV-ALSPEQAARIRELTG--ITSSLMMTLTLFGSPLSVHLV 80 (663) T ss_pred CCCCCCEEECCCCCEEEEEC-----CC--CCC----CCCEE-ECCHHHHHHHHHHHH--EEEEEEEEEEECCCEEEEEEE T ss_conf 89997055216777168633-----57--878----88311-068889998886641--000689987753840268984 Q ss_pred EEECC-CCEEEEE---EEHH-HHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHH Q ss_conf 76328-9529998---3045-89998878899999984308959998489808985368885509997896049987999 Q gi|255764476|r 281 RVLNS-FGEAGIA---IDVS-KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355 (792) Q Consensus 281 ~~~~~-~G~~Gia---~DIT-Erk~ae~aLrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ 355 (792) -.... .--+|++ -|-. -....+++|+-....+++.++||.|.|++++++.+|++|+++.||+.+.+.|+..+..+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lAa~Vfe~a~egI~ItD~~~~I~~vN~af~~iTGy~~~eviG~n~~~l~ 160 (663) T PRK10060 81 GRKINKREWAGTASAWHDTPSVARDLSHGLSFAEQVVSEANSVIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQSVFKLF 160 (663) T ss_pred CCEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHHHH T ss_conf 01303453353023203837789999988799999985458649999799998878679778868999991899879983 Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-CCCEEEE-CCCCCEEEEE---EEECCCCC----EEEEECCHHHHHHHH Q ss_conf 9989754777664657889999998762467-6502688-7898189999---73569986----899945957999999 Q gi|255764476|r 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWH-LPNGQTLHVI---VTSNPRGG----TIWMFENLTVQVDLE 426 (792) Q Consensus 356 ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~-~~~~~w~-l~DGr~l~v~---~~~~p~Gg----~~~~~~DITE~~~le 426 (792) ..+. +...|. ...-..++... =..+.|. ..+|..+... ......|+ ++.+|.||||+|+.| T Consensus 161 -----~s~~--~~~~~~---~~~~~~l~~~~~w~gE~w~r~k~G~~~~~~~~~~v~~~~~~~~~~~i~~f~DITe~k~~e 230 (663) T PRK10060 161 -----MSRR--EAAASR---RNIRGFFRSGNAYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQ 230 (663) T ss_pred -----CCCC--CCHHHH---HHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHH T ss_conf -----5755--448899---999999974981898888740589645798878776078970699999888804899999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|255764476|r 427 TKYNTL 432 (792) Q Consensus 427 ~~~~~l 432 (792) ++...+ T Consensus 231 e~l~~l 236 (663) T PRK10060 231 ERLRIL 236 (663) T ss_pred HHHHHH T ss_conf 999987 No 73 >cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes. Probab=99.05 E-value=6.1e-10 Score=85.95 Aligned_cols=63 Identities=43% Similarity=0.637 Sum_probs=56.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999666632258999999999735777889989999999999999999999999999988 Q gi|255764476|r 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 (792) Q Consensus 568 lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~ 632 (792) .+.+|++++||||||||++|.|+++++..... .++.+.+|++.|.++++++..+|+++|++++ T Consensus 3 ~~~~~~a~iaHelrtPL~~i~~~~~~l~~~~~--~~~~~~~~~~~i~~~~~~l~~lv~~~l~~~~ 65 (65) T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELL--DDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65) T ss_pred HHHHHHHHHHHHHCCHHHHHHCCHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 59999998729870488888601489885668--8699999999999999999999999998609 No 74 >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Probab=99.01 E-value=9.5e-09 Score=77.79 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=77.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCC-CCC-CCC---HHH Q ss_conf 899999999999999999999999985168005898159928985257898736778775661015-853-389---678 Q gi|255764476|r 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRK-LFK---EEI 248 (792) Q Consensus 174 ~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~-~~~-ll~---~~~ 248 (792) .++++..++..+++|.++....++|+|++|.|+|++|.+|+++.||.+|+..+...... ...+.. ..+ .+. ... T Consensus 557 L~r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~ 635 (1197) T PRK09959 557 LLRSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYK-NAMLPLENSESPFKDVFSNT 635 (1197) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHH-HCCCCCCCCCCHHHHHHHHH T ss_conf 99999999999999998899999998369987699825561224118889875231444-21356532222156777777 Q ss_pred HHHHHHHCCCCCEEEEEEEEEECC-EEE----EEEEEEEECC--CCEEEEEEEHHHHHHHHHHHHHHHH Q ss_conf 999986125787034578886569-078----9999976328--9529998304589998878899999 Q gi|255764476|r 249 KKRMISSSALEKNFCETVSTLEHG-NNK----SYKIVRVLNS--FGEAGIAIDVSKEITVNDQLTHTYE 310 (792) Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~G-~rr----~~~v~~~~~~--~G~~Gia~DITErk~ae~aLrr~~e 310 (792) .+........... ..+...+.+| +.| |......|.. .+..|.-+||||+|+.|++|+..++ T Consensus 636 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~ 703 (1197) T PRK09959 636 HEVTAETKENRTI-YTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERN 703 (1197) T ss_pred HHHHHHHHHCCCC-CCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHHH T ss_conf 8998753101210-0014530577542367753100037644440101154641289999999999999 No 75 >PRK13559 hypothetical protein; Provisional Probab=98.96 E-value=2.7e-08 Score=74.68 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=87.4 Q ss_pred HHHHHHHHHHHCCCCEEEECC---CCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC-----HHHHHHHHHHCCCCCEE Q ss_conf 999999998516800589815---9928985257898736778775661015853389-----67899998612578703 Q gi|255764476|r 191 HISVFKVLFDSLDFLVWHRDQ---AGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNF 262 (792) Q Consensus 191 ~~~~lr~llda~P~~vw~~D~---dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~-----~~~~~~~~~~~~~~~~~ 262 (792) +...|...++..++++.+.|+ |..|+|+|+||++++ ||+.++++++++.++. +....++..+...+.++ T Consensus 43 ~~~~~~~a~~~~r~a~~itd~~~~d~PIiy~N~aF~~lT---GYs~~EviGrncrfLqGp~t~~~~v~~ir~ai~~~~~~ 119 (363) T PRK13559 43 SGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLT---GYAAEEVVGRNCRFLQGAGTDPAAVAKIRAAIAAERVV 119 (363) T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCEEEECHHHHHHH---CCCHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCE T ss_conf 314799999747743899689999998899887999763---98979984999241089999989999999999839946 Q ss_pred EEEEE-EEECCEEEEEEEEEEECC--CCE----EEEEEEHHHHHHHHHHH Q ss_conf 45788-865690789999976328--952----99983045899988788 Q gi|255764476|r 263 CETVS-TLEHGNNKSYKIVRVLNS--FGE----AGIAIDVSKEITVNDQL 305 (792) Q Consensus 263 ~~~~~-~~~~G~rr~~~v~~~~~~--~G~----~Gia~DITErk~ae~aL 305 (792) ...+. ..++|...|..++..|+. .|. +|+..||||+++.+.+. T Consensus 120 ~~el~nyrKDGs~fwn~l~isPV~D~~G~v~~fig~q~DvTd~~~~~a~e 169 (363) T PRK13559 120 VVELLNYRKDGSPFWNALHLGPIYDEDGKLLYFFGSQWDVTDIRAVRALE 169 (363) T ss_pred EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHH T ss_conf 99999982699824776898887989997999999998515542045589 No 76 >PRK13558 bacterio-opsin activator; Provisional Probab=98.94 E-value=5.2e-08 Score=72.75 Aligned_cols=119 Identities=14% Similarity=0.167 Sum_probs=90.3 Q ss_pred HHHHHHHHHCCCCEEEEC---CCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC-----HHHHHHHHHHCCCCCEEEE Q ss_conf 999999851680058981---59928985257898736778775661015853389-----6789999861257870345 Q gi|255764476|r 193 SVFKVLFDSLDFLVWHRD---QAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFCE 264 (792) Q Consensus 193 ~~lr~llda~P~~vw~~D---~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~-----~~~~~~~~~~~~~~~~~~~ 264 (792) +.-...+|-.|.+|-+.| ++.+++|+|.+|.+++ |+...++++++..++. +.....++.....+..+.. T Consensus 158 ~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eit---Gy~~~e~~g~~~r~lq~~~~~~e~~~~~~~ai~~~~~~~v 234 (674) T PRK13558 158 RLKEQALDEAPIGITISDATDPEEPIIYINDSFEDIT---GYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQV 234 (674) T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHC---CCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEE T ss_conf 9887566405725998468888874388601236531---8981786497401210688880579999999755886334 Q ss_pred EEE-EEECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf 788-8656907899999763289--5----299983045899988788999999843 Q gi|255764476|r 265 TVS-TLEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTYEILHN 314 (792) Q Consensus 265 ~~~-~~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~e~Ld~ 314 (792) ... ...+|.-+|-.+...|+.+ | ++|+..||||||++|++|++.+++|++ T Consensus 235 e~r~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~ 291 (674) T PRK13558 235 VLRNYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDR 291 (674) T ss_pred EEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH T ss_conf 533314688378741245521057885899986214477889999999986889999 No 77 >PRK13558 bacterio-opsin activator; Provisional Probab=98.93 E-value=1.2e-07 Score=70.19 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=72.2 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEC---CCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 988788999999843089599984---89808985368885509997896049987999998975477766465788999 Q gi|255764476|r 300 TVNDQLTHTYEILHNLTVAIAIFD---QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376 (792) Q Consensus 300 ~ae~aLrr~~e~Ld~l~~~v~ifd---~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~ 376 (792) .++.+++.....+|..|.+|++-| ++..+.|+|.+|..+|||+...+.+.+.. ++. ....-|+. +. T Consensus 152 ~~~~e~~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r--~lq---~~~~~~e~--~~---- 220 (674) T PRK13558 152 TVESERRLKEQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHR--FLQ---GPKTNEDR--VA---- 220 (674) T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHH--HHC---CCCCCHHH--HH---- T ss_conf 78999998875664057259984688888743886012365318981786497401--210---68888057--99---- Q ss_pred HHHHHHHCCCC--CCEEEECCCCCEEEEEEEECC----CCCEEE---EECCHHHHHHHHHHHHH Q ss_conf 99987624676--502688789818999973569----986899---94595799999999999 Q gi|255764476|r 377 NIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNP----RGGTIW---MFENLTVQVDLETKYNT 431 (792) Q Consensus 377 ~~~~~~~~~~~--~~~~w~l~DGr~l~v~~~~~p----~Gg~~~---~~~DITE~~~le~~~~~ 431 (792) +.....-..++ .+.--+.+||..++...+-.| +|-++. +-+||||||+.|+.++. T Consensus 221 ~~~~ai~~~~~~~ve~r~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~ 284 (674) T PRK13558 221 EFWTAITEDHDTQVVLRNYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQG 284 (674) T ss_pred HHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH T ss_conf 9999975588633453331468837874124552105788589998621447788999999998 No 78 >PRK11360 sensory histidine kinase AtoS; Provisional Probab=98.88 E-value=1.3e-07 Score=69.94 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=71.2 Q ss_pred HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 99999843089599984898089853688855099978960499879999989754777664657889999998762467 Q gi|255764476|r 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386 (792) Q Consensus 307 r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~ 386 (792) ..+..|+++++||..+|.++++..+|+++.+|||++.+.+.++|....+ |. .++...-.+.+....... T Consensus 262 ~~e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~~~~l~----------~~-~~~~~~~~~~l~~~~~~~ 330 (607) T PRK11360 262 LNELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQPYSMLF----------DN-TQFYSPVLDTLEHGTEHV 330 (607) T ss_pred HHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHC----------CC-HHHHHHHHHHHHCCCCCC T ss_conf 8999986104669999799949998389999858797898596799957----------95-767799999985377421 Q ss_pred CCCEEEECCCCC-EEEEEEEE--CCCC---CEEEEECCHHHHHHHHHHHHHH Q ss_conf 650268878981-89999735--6998---6899945957999999999999 Q gi|255764476|r 387 THKDTWHLPNGQ-TLHVIVTS--NPRG---GTIWMFENLTVQVDLETKYNTL 432 (792) Q Consensus 387 ~~~~~w~l~DGr-~l~v~~~~--~p~G---g~~~~~~DITE~~~le~~~~~l 432 (792) ..+..+..+||. .+.+...| ..+| |.+.+|+||||++++|++.... T Consensus 331 ~~~~~~~~~~~~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~~ 382 (607) T PRK11360 331 ALEISFPGRDRTIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMARA 382 (607) T ss_pred CEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHH T ss_conf 2489960588349999998535768985889999999577899999999999 No 79 >pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Probab=98.85 E-value=1.9e-08 Score=75.69 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=45.1 Q ss_pred HHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHH----HHHHHHHCCCCC-EEEEE-E Q ss_conf 999998516800589815992898525789873677877566101585-3389678----999986125787-03457-8 Q gi|255764476|r 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI----KKRMISSSALEK-NFCET-V 266 (792) Q Consensus 194 ~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~----~~~~~~~~~~~~-~~~~~-~ 266 (792) +|++++|++|++||+.|.+|+++++|+++++++ |++.++.+++.. +++.+.. ..........+. ..... . T Consensus 2 r~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~---G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 78 (112) T pfam00989 2 DLRAILESLPDGIFVVDEDGRILYVNAAAEELL---GLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVS 78 (112) T ss_pred HHHHHHHHHHHHEEEECCCCCEEEECCCCCCCC---CCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 799999834246199989999999916533225---86366743752012457534399999999999819976887765 Q ss_pred EEEECCEEEEEEEEEEECC--C---CEEEEEEEH Q ss_conf 8865690789999976328--9---529998304 Q gi|255764476|r 267 STLEHGNNKSYKIVRVLNS--F---GEAGIAIDV 295 (792) Q Consensus 267 ~~~~~G~rr~~~v~~~~~~--~---G~~Gia~DI 295 (792) ....+|..+|+.++..|.. + |.+++..|| T Consensus 79 ~~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI 112 (112) T pfam00989 79 FRVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI 112 (112) T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC T ss_conf 2879998999999999999199999999999849 No 80 >PRK04069 serine-protein kinase RsbW; Provisional Probab=98.83 E-value=9.4e-08 Score=71.00 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=77.3 Q ss_pred HHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHH Q ss_conf 99999999988677538---886889999998799899999978897897786541488376268988885663799999 Q gi|255764476|r 686 RLLQIFSKILSNAMDFS---SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 (792) Q Consensus 686 rL~QVl~NLl~NAik~~---~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~ 762 (792) .++=++.--++|||+|. ++.+.|.|.+...++.+.|.|+|+|+|++++....-..|+...+.-...+..||||.+.+ T Consensus 42 di~LAV~EA~tNaI~Hay~~~~~~~i~i~~~~~~~~l~i~V~D~G~gfD~~~~~~~~~P~~~~~~l~~~~~gGlGl~lI~ 121 (158) T PRK04069 42 DLKIAVSEACTNAVQHAYKEEEVGEINIRFEIYEDRLEIVVADNGDSFDYETTKSKIGPYDPSEPIDDLREGGLGLFLIE 121 (158) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHH T ss_conf 89999999999999975156999479999999599999999991748795674324588888886111367874099999 Q ss_pred HHHHHCCCEEEEEEECCCCEEEEEE Q ss_conf 9999619869999788994399999 Q gi|255764476|r 763 SFINLHGGHVSISSSDEGVTTINCR 787 (792) Q Consensus 763 ~iVe~hgG~I~v~S~~G~Gttf~v~ 787 (792) +++. .|.++| +.||+++.+ T Consensus 122 ~lmD----eV~~~~--~~Gt~v~m~ 140 (158) T PRK04069 122 TLMD----DVTVYK--DSGVTVSMT 140 (158) T ss_pred HHCC----EEEEEE--CCCEEEEEE T ss_conf 7525----589990--898299999 No 81 >TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type.. Probab=98.81 E-value=2.3e-07 Score=68.32 Aligned_cols=266 Identities=16% Similarity=0.150 Sum_probs=141.4 Q ss_pred HHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCE-EEEE--E-ECCCC Q ss_conf 860699789998179970014134123218983202344432118946789899999999853965-8999--9-86897 Q gi|255764476|r 75 LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLV--A-ETQND 150 (792) Q Consensus 75 ll~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l~~~g~~-f~l~--~-~t~~g 150 (792) |+...+++-+..|.+|---++.-+-+..+.....+=.--++...+.+++-..++..+....++|.+ |... . ..+.+ T Consensus 1 l~~~~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~ 80 (453) T TIGR02040 1 LLEAAADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSD 80 (453) T ss_pred CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC T ss_conf 97764770355517870776442885524141302458844441357789999999971468888577776654117999 Q ss_pred E-----EEE-----EEEEEECCEEEEE-EEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCC Q ss_conf 2-----999-----8304557548998-7401068999999999----999999999999999851680058981-5992 Q gi|255764476|r 151 C-----AIK-----IEGRVSGSCAFLR-ILSLDGIYSELAETTL----KCKKLSNHISVFKVLFDSLDFLVWHRD-QAGD 214 (792) Q Consensus 151 ~-----~i~-----~~Gr~~g~~a~~r-~~d~s~~~~~~ael~~----~~~~L~~~~~~lr~llda~P~~vw~~D-~dGr 214 (792) . ++- .+|...|-.++=| ++.++++++.+.+.+. ...++++-|.+||.+||-..+||.+.| .+|| T Consensus 81 ~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~~st~r 160 (453) T TIGR02040 81 LELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVDVSTGR 160 (453) T ss_pred CCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH T ss_conf 72440346761678788887358884652478999999999987888879998667544433541148867998536534 Q ss_pred EEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHHHHHHH----HHCCCCCEEEEEEEEEECCEEEEE-EEEEEECCCCE Q ss_conf 8985257898736778775661015853-38967899998----612578703457888656907899-99976328952 Q gi|255764476|r 215 ILWANISYKKNTETEGIVFQKAIGESRK-LFKEEIKKRMI----SSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSFGE 288 (792) Q Consensus 215 i~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~rr~~-~v~~~~~~~G~ 288 (792) |+-+|++-..+.+..+...+..+|..+. -++...++... .....+..-..++.. .++..++. .++.+.-.. . T Consensus 161 ileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~l~~~l~~~~atg~A~~~~i~l-~~~~~~~~v~~s~~r~~~-~ 238 (453) T TIGR02040 161 ILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREELELLLREVRATGKAAEVRILL-AESRKELLVVVSLFRQDS-E 238 (453) T ss_pred HHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCEEEEEEEEECCC-C T ss_conf 77867999998502677501231113431466454368999998643015778717874-578873178877640236-6 Q ss_pred EEEEE---EHHHHHHHHHHHH---HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCC Q ss_conf 99983---0458999887889---999998430895999848980898536888550999 Q gi|255764476|r 289 AGIAI---DVSKEITVNDQLT---HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342 (792) Q Consensus 289 ~Gia~---DITErk~ae~aLr---r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~ 342 (792) --+-+ -|-+..+.+.... -+..+++..|++|+..|.+|++.-+|.+|.+|..+. T Consensus 239 ~~fL~~l~~~~~~~~~~~~~s~~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~s 298 (453) T TIGR02040 239 SLFLVRLSPAGASAAVGDVLSENSMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVS 298 (453) T ss_pred CHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC T ss_conf 410113031124467777667427899999742987999778873288889999898717 No 82 >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Probab=98.74 E-value=2.8e-06 Score=60.84 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH Q ss_conf 89999999999999999999966663225899999999973577788998999 Q gi|255764476|r 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 (792) Q Consensus 555 L~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~ 607 (792) ||||.+-.. -+...|+...|+....+...|..-+--+-..+..|-|-|+- T Consensus 419 LReR~eDI~---~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVREL 468 (560) T COG3829 419 LRERKEDIP---LLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVREL 468 (560) T ss_pred CCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHH T ss_conf 233820189---99999999999872887666899999999868999609999 No 83 >pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Probab=98.73 E-value=1.9e-08 Score=75.71 Aligned_cols=41 Identities=32% Similarity=0.516 Sum_probs=25.5 Q ss_pred HHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCH Q ss_conf 96203432899689848864058887828987894389838 Q gi|255764476|r 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480 (792) Q Consensus 440 ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~ 480 (792) +|+++++|.+++.||++.++|++|++++|++.+++.+++.. T Consensus 1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~ 41 (110) T pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLA 41 (110) T ss_pred CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCH T ss_conf 99857353799499969999347466709898998095121 No 84 >pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Probab=98.69 E-value=7.7e-08 Score=71.57 Aligned_cols=103 Identities=15% Similarity=0.246 Sum_probs=56.6 Q ss_pred HHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 99996203432899689848864058887828987894389838898877763025611468899874026544311568 Q gi|255764476|r 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516 (792) Q Consensus 437 ~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~ 516 (792) +..+|+++++|.+++.+|++.++|+++++|+||+++++.+++..+.+... +.......+...+.. .......+. T Consensus 4 r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~e~ 77 (112) T pfam00989 4 RAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEE-----DDAEVAELLRQALLQ-GEESRGGEV 77 (112) T ss_pred HHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCC-----CHHHHHHHHHHHHHC-CCCEEEEEE T ss_conf 99998342461999899999999165332258636674375201245753-----439999999999981-997688776 Q ss_pred EEEECCEEE--EEEEEEECCC--C--CEEEECCCC Q ss_conf 999725038--8899997058--8--766312320 Q gi|255764476|r 517 TLELLSDSV--LEYSIIPLPN--A--QTMLTFVNV 545 (792) Q Consensus 517 ~~~~~dG~~--~~~~~~pl~d--g--~~l~~~~DI 545 (792) ++.++||+. ++....|+.| | +.+.+++|| T Consensus 78 ~~~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI 112 (112) T pfam00989 78 SFRVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI 112 (112) T ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC T ss_conf 52879998999999999999199999999999849 No 85 >TIGR00229 sensory_box PAS domain S-box; InterPro: IPR000014 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0004871 signal transducer activity, 0007165 signal transduction. Probab=98.67 E-value=3.8e-07 Score=66.87 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=45.9 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCC-CHH----HHHHHHHHCC-CC-CEEE Q ss_conf 999999998516800589815992898525789873677877566101585338-967----8999986125-78-7034 Q gi|255764476|r 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-KEE----IKKRMISSSA-LE-KNFC 263 (792) Q Consensus 191 ~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll-~~~----~~~~~~~~~~-~~-~~~~ 263 (792) +++++++++++.|.++++.|.+|.++++|++|++.+ |+..++.++.....+ .+. ....+..... .. .... T Consensus 3 ~e~~~~~~~e~~~~~~~~~d~~g~~~~~n~~~~~~~---Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130) T TIGR00229 3 SEERYRAIFESSPDAIIVVDLEGNILYVNPAFEELF---GYSAEELLGRNVLELIPEEDREELRERIERLLETGEREPVS 79 (130) T ss_pred HHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHH---CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE T ss_conf 589999986224542688705761575032577761---78758953875100027641468999998763267543201 Q ss_pred EEEE---EEECCEEEEEEEEEEECC--C----CEEEEEEEHHHHHHHHHH Q ss_conf 5788---865690789999976328--9----529998304589998878 Q gi|255764476|r 264 ETVS---TLEHGNNKSYKIVRVLNS--F----GEAGIAIDVSKEITVNDQ 304 (792) Q Consensus 264 ~~~~---~~~~G~rr~~~v~~~~~~--~----G~~Gia~DITErk~ae~a 304 (792) .... ...+|..+|..+...|.. . +..+++.|||++|.++++ T Consensus 80 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~~~~~~~d~t~~~~~~~~ 129 (130) T TIGR00229 80 EERRVLGRRKDGSEIWVEVSVSPIRDSNGGVLGVLGIVRDITERKEAEEA 129 (130) T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHC T ss_conf 23466644378968899873010000137703677665211478998850 No 86 >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Probab=98.67 E-value=2.1e-07 Score=68.66 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=7.7 Q ss_pred CCCCEEEEECHHHHHH Q ss_conf 4898089853688855 Q gi|255764476|r 323 DQNRYLQFHNRSFVEL 338 (792) Q Consensus 323 d~~~rl~~~N~a~~~l 338 (792) |||+.+.++++.-..| T Consensus 212 dPdG~~~vf~r~t~~l 227 (538) T COG1389 212 DPDGNLVVFPRSTDKL 227 (538) T ss_pred CCCCCEEEECCCHHHC T ss_conf 8998678713314117 No 87 >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO).. Probab=98.62 E-value=7.6e-07 Score=64.77 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=75.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCC-CCCCCHHHHHHHHHHCCC-CCE--EEE Q ss_conf 9999999999851680058981599289852578987367787756610158-533896789999861257-870--345 Q gi|255764476|r 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMISSSAL-EKN--FCE 264 (792) Q Consensus 189 ~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~-~~ll~~~~~~~~~~~~~~-~~~--~~~ 264 (792) .+..++|+..+.++|++|.+.|.+|+|.|||++..++++..- ++..+.. .+++..+.-..+-..... ..+ ..- T Consensus 2 ~~~~~rf~~a~~AlPDavv~ld~~~~I~W~N~~A~~~LGl~~---p~D~Gq~i~~l~R~P~F~~yl~~~~~t~~p~~L~~ 78 (339) T TIGR02966 2 SALLSRFRAAAQALPDAVVVLDEEGQIEWCNKAAERLLGLRW---PDDLGQRITNLIRHPEFVEYLAAGRFTSEPEQLEL 78 (339) T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCC---CHHHCCCHHHHCCCHHHHHHHHCCCCCCCCCCEEE T ss_conf 468899999997589829997289837862148898627427---34507702121057679999733555578853110 Q ss_pred EEEEEECCEEEEEEEEEEECCCCE-EEEEEEHHHHHHHHHHHHHHH Q ss_conf 788865690789999976328952-999830458999887889999 Q gi|255764476|r 265 TVSTLEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTY 309 (792) Q Consensus 265 ~~~~~~~G~rr~~~v~~~~~~~G~-~Gia~DITErk~ae~aLrr~~ 309 (792) . .....+.+.+.+.-+|..++. .=++.|||+.++.|+--|-|. T Consensus 79 ~--~~p~~~~~~l~~r~~PY~~~~~Ll~~RDvT~l~rLe~mRrDFV 122 (339) T TIGR02966 79 P--DSPINEERVLEIRIMPYGEEQKLLVARDVTRLRRLEQMRRDFV 122 (339) T ss_pred C--CCCCCCCCEEEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHC T ss_conf 4--6888866479999997569837999876368999986534311 No 88 >TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent. Probab=98.61 E-value=1.3e-07 Score=70.00 Aligned_cols=104 Identities=21% Similarity=0.358 Sum_probs=85.0 Q ss_pred EECCCCCEEEECHHHHHHHHHHHHHHHHH--CC-CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC Q ss_conf 95698608998789999999999886775--38-8868899999987998999999788978977865414883762689 Q gi|255764476|r 672 ISDGKLGSFVADRQRLLQIFSKILSNAMD--FS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 (792) Q Consensus 672 ~~~~~~~~v~~D~~rL~QVl~NLl~NAik--~~-~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~ 748 (792) .++|.+- .-..++.++..=++|||= |- ..++.|.|++.-.+..+.++|.|+|+|| +.+++.-+|.||+++. T Consensus 29 ~LDPT~~----El~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~~~~~~v~D~G~GI--~~lE~A~~PLyTskPe 102 (137) T TIGR01925 29 QLDPTLE----ELTDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDDEVSITVRDEGIGI--ENLEEAREPLYTSKPE 102 (137) T ss_pred HCCCCHH----HHHHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECCEEEEEEEECCCCH--HHHHHHCCCCCCCCCC T ss_conf 4287544----455554333223212053145637997789999960548999986467572--3378532664579987 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE Q ss_conf 888856637999999999619869999788994399999 Q gi|255764476|r 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 (792) Q Consensus 749 ~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~ 787 (792) =. =+|+|..|--.|.. .|.|+|++++||+.... T Consensus 103 LE--RSGMGFTvME~FMD----~~~v~S~~~~GT~I~~~ 135 (137) T TIGR01925 103 LE--RSGMGFTVMESFMD----DVEVDSEKEKGTKIILK 135 (137) T ss_pred CC--CCCCCEEEECCCCC----CEEEEECCCCCCEEEEE T ss_conf 22--06786012111245----12686238998468875 No 89 >PRK04184 DNA topoisomerase VI subunit B; Validated Probab=98.60 E-value=4.8e-07 Score=66.15 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=7.5 Q ss_pred CCCHHHH-HHHHHHHHH Q ss_conf 3206899-998888999 Q gi|255764476|r 543 VNVTDSV-RAERALTEK 558 (792) Q Consensus 543 ~DIT~~k-~~E~aL~e~ 558 (792) -|+.|-. .+..||++. T Consensus 433 Ad~pEI~~EIrlAl~e~ 449 (533) T PRK04184 433 ADVPEIEKEIRLALMEA 449 (533) T ss_pred CCCHHHHHHHHHHHHHH T ss_conf 37789999999999999 No 90 >PRK11073 glnL nitrogen regulation protein NR(II); Provisional Probab=98.58 E-value=2.5e-06 Score=61.20 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=73.7 Q ss_pred HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 99999843089599984898089853688855099978960499879999989754777664657889999998762467 Q gi|255764476|r 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386 (792) Q Consensus 307 r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~ 386 (792) ...+.||++++||+++|.++++.++|++++++||++.+.+.++|... ++.. ...+... ..+.+...+... T Consensus 8 ~~~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~~~~-l~~~--------~~~~~~~-~~~~~~~~~~~~ 77 (348) T PRK11073 8 DAGQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTPLPE-LLSY--------FSLNIEL-MQESLQAGQGFT 77 (348) T ss_pred CHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHH-HHCC--------CCCCHHH-HHHHHHCCCCCC T ss_conf 39999986607964998979701283999999785989985996899-8466--------5301899-999997389741 Q ss_pred CCCEEEECCCCCE--EEEEEEECCCCCEEEEECCHHHHHHHHHHHH Q ss_conf 6502688789818--9999735699868999459579999999999 Q gi|255764476|r 387 THKDTWHLPNGQT--LHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430 (792) Q Consensus 387 ~~~~~w~l~DGr~--l~v~~~~~p~Gg~~~~~~DITE~~~le~~~~ 430 (792) .++..+..||+. +.+...|.+++.++..+.|||+++++++... T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~di~~~k~l~~e~~ 122 (348) T PRK11073 78 -DNEVTLVIDGRSHILSLTAQRLPEGMILLEMAPMDNQRRLSQEQL 122 (348) T ss_pred -CCEEEEEECCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHH T ss_conf -323999989969999999998258689999996279999999999 No 91 >TIGR01052 top6b DNA topoisomerase VI, B subunit; InterPro: IPR005734 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B of topoisomerase VI, a type IIB topoisomerase found predominantly in archaea, but also in a few eukayotes, such as the plant Arabidopsis thaliana . This enzyme assembles as a heterotetramer, consisting of two A subunits required for DNA cleavage and two B subunits required for ATP hydrolysis. The B subunit is structurally similar to the ATPase domain of type IIA topoisomerases, but the A subunit is distinct, and instead shares homology with the Spo11 protein that mediates double-strand DNA breaks during meiotic recombination in eukaryotes . Therefore, though related to type IIA topoisomerases, topoisomerase VI may have a distinctive mechanism of action. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome. Probab=98.53 E-value=8.4e-07 Score=64.46 Aligned_cols=28 Identities=11% Similarity=-0.030 Sum_probs=18.3 Q ss_pred HHHHHHHHCCCC-EEEECCCCCEEEECHH Q ss_conf 999998516800-5898159928985257 Q gi|255764476|r 194 VFKVLFDSLDFL-VWHRDQAGDILWANIS 221 (792) Q Consensus 194 ~lr~llda~P~~-vw~~D~dGri~~vN~A 221 (792) -+|...=+.|.. |-+.||||.+...|++ T Consensus 198 Ylrrt~~anPHA~I~l~~PdG~~~~F~R~ 226 (662) T TIGR01052 198 YLRRTAVANPHAKIVLVEPDGEIYVFPRS 226 (662) T ss_pred HHHHHHHHCCCCEEEEECCCCCEEECCCC T ss_conf 98998751864089988698637753663 No 92 >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Probab=98.48 E-value=3.8e-06 Score=60.00 Aligned_cols=97 Identities=23% Similarity=0.327 Sum_probs=74.3 Q ss_pred CHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHH Q ss_conf 7899999999998867753888----688999999879989999997889789778654148837626898888566379 Q gi|255764476|r 683 DRQRLLQIFSKILSNAMDFSSK----GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 (792) Q Consensus 683 D~~rL~QVl~NLl~NAik~~~~----gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGL 758 (792) |-.+++-++.-++.||++|+-+ .|.|.|.+...++.+.+.|.|.|+||. ..++.+.|-++..... ..-|+|| T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~~--~~~G~Gl 112 (146) T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPGDTTAEGL--QEGGLGL 112 (146) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEECCCCCC--CHHHHCCCCCCCCCCC--CCCCCCH T ss_conf 99999999999998999976303899865999999709939999995798987--8888538888888753--2473137 Q ss_pred HHHHHHHHHCCCEEEEEEECCC---CEEEEEE Q ss_conf 9999999961986999978899---4399999 Q gi|255764476|r 759 SIVESFINLHGGHVSISSSDEG---VTTINCR 787 (792) Q Consensus 759 siv~~iVe~hgG~I~v~S~~G~---Gttf~v~ 787 (792) .+.++++. ++.+++.++. +++++.. T Consensus 113 ~l~~~~~D----~~~~~~~~~~~~~~~~~~~~ 140 (146) T COG2172 113 FLAKRLMD----EFSYERSEDGRNRLTKITLR 140 (146) T ss_pred HHHHHHHE----EEEEEEECCCCEEEEEEEEC T ss_conf 88862110----79999606985589999962 No 93 >TIGR00229 sensory_box PAS domain S-box; InterPro: IPR000014 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0004871 signal transducer activity, 0007165 signal transduction. Probab=98.41 E-value=3.4e-06 Score=60.34 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=70.4 Q ss_pred HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHH-HHHHHHHCCCCCCCE Q ss_conf 9999996203432899689848864058887828987894389838898877763025611468-899874026544311 Q gi|255764476|r 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD-LFAAIITSFDDERKS 513 (792) Q Consensus 435 ~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~r~~ 513 (792) ..+..+++.++++.+++.+|.+.++|+++++++||+.+++.++.... +... ++..... .+............. T Consensus 6 ~~~~~~e~~~~~~~~~d~~g~~~~~n~~~~~~~Gy~~~e~~g~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (130) T TIGR00229 6 RYRAIFESSPDAIIVVDLEGNILYVNPAFEELFGYSAEELLGRNVLE-LIPE-----EDREELRERIERLLETGEREPVS 79 (130) T ss_pred HHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCCCC-CCCC-----CHHHHHHHHHHHHHCCCCCCCCE T ss_conf 99998622454268870576157503257776178758953875100-0276-----41468999998763267543201 Q ss_pred EEEEE--EECCEEEE--EEEEEECC--CCC---EEEECCCCHHHHHHHHHH Q ss_conf 56899--97250388--89999705--887---663123206899998888 Q gi|255764476|r 514 LQGTL--ELLSDSVL--EYSIIPLP--NAQ---TMLTFVNVTDSVRAERAL 555 (792) Q Consensus 514 ~~~~~--~~~dG~~~--~~~~~pl~--dg~---~l~~~~DIT~~k~~E~aL 555 (792) ...++ .++||..+ .....|++ +|. .+..+.|||++|+.|++| T Consensus 80 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~~~~~~~d~t~~~~~~~~l 130 (130) T TIGR00229 80 EERRVLGRRKDGSEIWVEVSVSPIRDSNGGVLGVLGIVRDITERKEAEEAL 130 (130) T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCC T ss_conf 234666443789688998730100001377036776652114789988509 No 94 >PRK00095 mutL DNA mismatch repair protein; Reviewed Probab=98.32 E-value=1.6e-06 Score=62.65 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEE Q ss_conf 9999999999999999998516800589815992898 Q gi|255764476|r 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217 (792) Q Consensus 181 l~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~ 217 (792) +|....++..-.+.++.+.=+-|..-|..-.+|+.++ T Consensus 160 LKs~~~E~~~I~~~v~~~AL~~P~I~f~l~~~~k~~~ 196 (612) T PRK00095 160 LKSEKTELGHIDDVVRRLALAHPDVAFTLTHNGKLVL 196 (612) T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEE T ss_conf 5798179999999999997517975899998999972 No 95 >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Probab=98.31 E-value=2.3e-05 Score=54.69 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=65.1 Q ss_pred HHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHCCCCCEEEEEEEEEECCEE Q ss_conf 9998516800589815992898525789873677877566101585-338967899998612578703457888656907 Q gi|255764476|r 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274 (792) Q Consensus 196 r~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~G~r 274 (792) +.+++.++.++.+.|....+..+|..+....+.... ..++... ++++....+........... .. .... .. T Consensus 4 ~~~l~~~~~~~~vi~~~~~~~~~~~~a~~~~~~~~~---~~i~~~~~~i~~~~~~~~v~~~~~~~~~--~~--~~~~-~~ 75 (560) T COG3829 4 EGILKSILDGPVVIDKNTGIDVANALALAKRQKNAE---AVIGRPLREILETLGMERVEQSRDKELT--ER--LKLK-VK 75 (560) T ss_pred HHHHHHCCCCEEEEECCCCEEEECHHHHHHHHCCEE---EEECCCHHHHHCCCCCCEEECCCCCCEE--EE--EECC-CE T ss_conf 445665046408997177547603377765105447---8742341111112586234106765201--35--5406-40 Q ss_pred EEEEEEEEECCC-----CEEEEEEEHHHHHHHHHHH-----HHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHH Q ss_conf 899999763289-----5299983045899988788-----999999843089599984898089853688855099978 Q gi|255764476|r 275 KSYKIVRVLNSF-----GEAGIAIDVSKEITVNDQL-----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344 (792) Q Consensus 275 r~~~v~~~~~~~-----G~~Gia~DITErk~ae~aL-----rr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~ 344 (792) +..-+...|... |+.-+..|++|.-..-++. +.+...++.+.+++.+.|.+++++++|+++.+++|++++ T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~~~~~gl~~e 155 (560) T COG3829 76 RIVVVGKTPVDEQGRVVGVLEVFLDISEALELIEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKAYAKLLGLSPE 155 (560) T ss_pred EEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHH T ss_conf 48981785241277444551254514989999999999999999999862567459986999689984778988399989 Q ss_pred HHHCC Q ss_conf 96049 Q gi|255764476|r 345 FLATN 349 (792) Q Consensus 345 ~l~~~ 349 (792) .+.+. T Consensus 156 ~~~gk 160 (560) T COG3829 156 EVLGK 160 (560) T ss_pred HHCCC T ss_conf 98197 No 96 >TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type.. Probab=98.08 E-value=2.8e-05 Score=54.04 Aligned_cols=264 Identities=14% Similarity=0.139 Sum_probs=138.9 Q ss_pred HHHHCCCCEEEECCCCCEEE--ECHHHHHHHCCCCCCHHHHHCC-CCCCCCHHHHHHHHHHCCCCC-----EEEEEE-E- Q ss_conf 98516800589815992898--5257898736778775661015-853389678999986125787-----034578-8- Q gi|255764476|r 198 LFDSLDFLVWHRDQAGDILW--ANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSALEK-----NFCETV-S- 267 (792) Q Consensus 198 llda~P~~vw~~D~dGri~~--vN~A~~~~~e~~~~~~~~~i~~-~~~ll~~~~~~~~~~~~~~~~-----~~~~~~-~- 267 (792) |+...|+.-.+.|.+|-+.- +|.. ++. .....++.++ +.+++..+.++++........ .+.... + T Consensus 1 l~~~~~Dv~L~~d~~Gvvre~~~~~~--~~s---~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~ 75 (453) T TIGR02040 1 LLEAAADVTLLLDAEGVVREVALSND--ELS---AEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRF 75 (453) T ss_pred CCCCCCCCEEEECCCCCEEEEECCCC--CCC---HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 97764770355517870776442885--524---1413024588444413577899999999714688885777766541 Q ss_pred EEECCEEEEEEEEEE--EC----CCCEEEEEEEHH---HHHH----HHHHH-----------HHHHHHHHHCCCCEEEEC Q ss_conf 865690789999976--32----895299983045---8999----88788-----------999999843089599984 Q gi|255764476|r 268 TLEHGNNKSYKIVRV--LN----SFGEAGIAIDVS---KEIT----VNDQL-----------THTYEILHNLTVAIAIFD 323 (792) Q Consensus 268 ~~~~G~rr~~~v~~~--~~----~~G~~Gia~DIT---Erk~----ae~aL-----------rr~~e~Ld~l~~~v~ifd 323 (792) +...+..-.+..+.+ +. +.|+..+..|.- |.++ |+++. .|++..|+-..++|.+.| T Consensus 76 ~~P~~~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~ 155 (453) T TIGR02040 76 VLPSDLELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVD 155 (453) T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 17999724403467616787888873588846524789999999999878888799986675444335411488679985 Q ss_pred -CCCEEEEECHHHHHHHCCCHH---HHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCE Q ss_conf -898089853688855099978---9604998799999897547776646578899999987624676502688789818 Q gi|255764476|r 324 -QNRYLQFHNRSFVELWEIDLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399 (792) Q Consensus 324 -~~~rl~~~N~a~~~l~gl~~~---~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~~~~w~l~DGr~ 399 (792) .++|++-.|+++..|.|-... -|.|.+--.++ + ..+......-.....-...+.+..-+|++++. T Consensus 156 ~st~rileaN~~A~~lLg~~~~~rd~LvG~~~~~e~----------~-~~~~~~l~~~l~~~~atg~A~~~~i~l~~~~~ 224 (453) T TIGR02040 156 VSTGRILEANSAAAALLGAEGQRRDSLVGREFPQEL----------E-EREREELELLLREVRATGKAAEVRILLAESRK 224 (453) T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCC----------C-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC T ss_conf 365347786799999850267750123111343146----------6-45436899999864301577871787457887 Q ss_pred -EEEEEE-ECCCCCEEEEE--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH-HHH Q ss_conf -999973-56998689994--5957999999999999999999996203432899689848864058887828987-894 Q gi|255764476|r 400 -LHVIVT-SNPRGGTIWMF--ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE-NRL 474 (792) Q Consensus 400 -l~v~~~-~~p~Gg~~~~~--~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~-~~l 474 (792) +-|... ...++.-.++. ..|-++...+....+- .+...++++.+++|.+.|.||+|.-+|.+|.+|..++. +.+ T Consensus 225 ~~~v~~s~~r~~~~~~fL~~l~~~~~~~~~~~~~s~~-sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v 303 (453) T TIGR02040 225 ELLVVVSLFRQDSESLFLVRLSPAGASAAVGDVLSEN-SMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVSSKEAV 303 (453) T ss_pred CEEEEEEEEECCCCCHHHEEECCCCCCCCCCCCCCCH-HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHH T ss_conf 3178877640236641011303112446777766742-789999974298799977887328888999989871775453 Q ss_pred CCCC Q ss_conf 3898 Q gi|255764476|r 475 SPGT 478 (792) Q Consensus 475 ~~~~ 478 (792) .|++ T Consensus 304 ~G~~ 307 (453) T TIGR02040 304 RGRT 307 (453) T ss_pred CCCC T ss_conf 1332 No 97 >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Probab=98.02 E-value=0.00044 Score=45.86 Aligned_cols=105 Identities=11% Similarity=-0.022 Sum_probs=64.3 Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCC-CCHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 999999999851680058981599289852578987367787756610158533-8967899998612578703457888 Q gi|255764476|r 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVST 268 (792) Q Consensus 190 ~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~l-l~~~~~~~~~~~~~~~~~~~~~~~~ 268 (792) +++..|++++|++|+||+..|.+|+++++|+|.++.++ .+.++++++...- +.... .......+.+......+ T Consensus 77 r~~~~L~alLdsl~dgV~svD~~G~I~~~N~aa~~i~~---~~~~~~~G~~i~~~~~~~~---~~~~l~~~~~~~~~~~~ 150 (513) T PRK10820 77 REHLALSALLEALPEPVLSIDMKSKVELANPASCQLFG---QSEERLRNHTAAQLINGFN---FLRWLESEPQDSHNEHV 150 (513) T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHC---CCHHHHCCCCHHHHCCCCC---HHHHHHCCCCCCCCEEE T ss_conf 68889999997389978998599819976399999849---8968877979999718756---99998628987663599 Q ss_pred EECCEEEEEEEEEEECCC--C---EEE---EEEEHHHHHH Q ss_conf 656907899999763289--5---299---9830458999 Q gi|255764476|r 269 LEHGNNKSYKIVRVLNSF--G---EAG---IAIDVSKEIT 300 (792) Q Consensus 269 ~~~G~rr~~~v~~~~~~~--G---~~G---ia~DITErk~ 300 (792) ...|......++.+...+ | .+| +..|.++..+ T Consensus 151 ~~~~~~~~~~~~pi~~~~~~~~~~~~GaV~~lk~~~~~~~ 190 (513) T PRK10820 151 VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 (513) T ss_pred EECCCEEEEEEEEEEECCCCCCCEEEEEEEEECCHHHHHH T ss_conf 8769678999767875277886036668988246899999 No 98 >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Probab=97.95 E-value=0.00071 Score=44.42 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=64.5 Q ss_pred HHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCC------CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9984308959998489808985368885509997896049------9879999989754777664657889999998762 Q gi|255764476|r 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383 (792) Q Consensus 310 e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~------p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~ 383 (792) ..|+.++.||..||.++++.-+|++..+|++.+.+.+-|. |...+++...+ .+++ T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~lsa~ap~~~~vf~~~~-------------------a~~~ 434 (712) T COG5000 374 AVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSAIAPELEEVFAEAG-------------------AAAR 434 (712) T ss_pred HHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHH-------------------HHCC T ss_conf 998158503899747870776260178884687067644026642137899999765-------------------4038 Q ss_pred CCCCCCEEEECCC-CCEEEEEEEECCC---CCEEEEECCHHHHHHHHH Q ss_conf 4676502688789-8189999735699---868999459579999999 Q gi|255764476|r 384 SSETHKDTWHLPN-GQTLHVIVTSNPR---GGTIWMFENLTVQVDLET 427 (792) Q Consensus 384 ~~~~~~~~w~l~D-Gr~l~v~~~~~p~---Gg~~~~~~DITE~~~le~ 427 (792) .....+-....++ -|++.|-.+.++. +|.+.+|+|||+-+.+++ T Consensus 435 ~~~~~ev~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQR 482 (712) T COG5000 435 TDKRVEVKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQR 482 (712) T ss_pred CCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHH T ss_conf 774201000147874156667532144468856999635089999999 No 99 >KOG0519 consensus Probab=97.89 E-value=5.7e-06 Score=58.80 Aligned_cols=210 Identities=19% Similarity=0.186 Sum_probs=155.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 99999999999966663225899999999973577788998999999999999999999999999998851498300023 Q gi|255764476|r 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 (792) Q Consensus 564 ~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~ 643 (792) .+......|...++|..++|.+++++...++..... +.+.+.--++....++..+..++++-.|.++..-|.-..... T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~--~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i 458 (786) T KOG0519 381 MAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIV--LSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESI 458 (786) T ss_pred HCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEE--ECCCCCEEEEECCCCHHHHHHHHCCCHHCCCCCCCCCCCCCC T ss_conf 351556678887413312422042122357665202--236664068502330465554514661003456876453322 Q ss_pred EECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CEEEECHHHHHHHHHHHHHHHHH--CCCCCC--EEEEEEEEE--- Q ss_conf 3069999999999999999848968999956986-08998789999999999886775--388868--899999987--- Q gi|255764476|r 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMD--FSSKGS--TVILKAARD--- 715 (792) Q Consensus 644 ~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~-~~v~~D~~rL~QVl~NLl~NAik--~~~~gg--~I~i~~~~~--- 715 (792) ...+..++.............+...+.+.+..+. ..+++|..++.|++.+..+|+.. ++..+. .+.+.+... T Consensus 459 ~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (786) T KOG0519 459 VFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLGIS 538 (786) T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEEECCCCCC T ss_conf 23288998867432110034752223312356887310110344544555430122232003357620699980126654 Q ss_pred ------------------CC-EEEEEEEECCCCCCHHHHHHHCCCCEECCCC-CC-CCCCCHHHHHHHHHHHHCCCEEEE Q ss_conf ------------------99-8999999788978977865414883762689-88-885663799999999961986999 Q gi|255764476|r 716 ------------------NG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQ-RRGVGLGLSIVESFINLHGGHVSI 774 (792) Q Consensus 716 ------------------~~-~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~-~~-~~GtGLGLsiv~~iVe~hgG~I~v 774 (792) .+ .+++.+.++..|+......-.|.-|.+.... .+ ..+.++.++.+....+.+.|.+++ T Consensus 539 vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (786) T KOG0519 539 VDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGL 618 (786) T ss_pred CCCCCCHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC T ss_conf 11144310566643666100244223310303467777204565540034542002455542012365677775314335 Q ss_pred E Q ss_conf 9 Q gi|255764476|r 775 S 775 (792) Q Consensus 775 ~ 775 (792) . T Consensus 619 ~ 619 (786) T KOG0519 619 V 619 (786) T ss_pred C T ss_conf 5 No 100 >COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Probab=97.89 E-value=0.0023 Score=40.89 Aligned_cols=195 Identities=12% Similarity=0.151 Sum_probs=128.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH Q ss_conf 99996666322589999999997357778899899999999999999999999999999885149830002330699999 Q gi|255764476|r 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 (792) Q Consensus 572 F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i 651 (792) +.+.+-||+=+|..+|..-.+||.++.. +.+-++-|.+|+..+ .+.|.|+|+--|.---.-..+|-.+.- T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~a------ddDAm~LIrsSArna----s~rLqFaR~AFGAsgSag~~iDtgeae 87 (214) T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGA------DDDAMDLIRSSARNA----SVRLQFARLAFGASGSAGASIDTGEAE 87 (214) T ss_pred HHHHHHHHCCCCHHHHHCHHHHHCCCCC------CHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCHHHH T ss_conf 9998875404817776032566426896------478999999976517----888778898725555433356606699 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCC-- Q ss_conf 999999999998489689999569860899878999999999988677538886889999998799899999978897-- Q gi|255764476|r 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS-- 729 (792) Q Consensus 652 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~G-- 729 (792) .-+.+.+. .+| -++....++.+ . ... -...++||+--|...-|.||.+.+..+..+.+-+|++.-.|+= T Consensus 88 k~A~~~~a---~ek-pe~~W~g~r~~---~-~Kn-~vkllLNl~lia~~aiPrGG~~~vtle~~e~d~rfsi~akG~m~R 158 (214) T COG5385 88 KAAQDFFA---NEK-PELTWNGPRAI---L-PKN-RVKLLLNLFLIAYGAIPRGGSLVVTLENPETDARFSIIAKGRMMR 158 (214) T ss_pred HHHHHHHH---CCC-CCCCCCCCHHH---C-CCC-HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCC T ss_conf 99999986---238-71235587422---4-750-589999999997055788982689953677674389983275344 Q ss_pred CCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 8977865414883762689888856637999999999619869999788994399999734 Q gi|255764476|r 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792) Q Consensus 730 I~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792) .||+.++-+=. .+......+.-.-=+-.--+++.-|++|.|++.... ..|+-+.|+ T Consensus 159 vppk~lel~~G----~~~eE~vdahsVQpyYt~lLa~eAgm~I~v~~~~e~-iv~~A~v~a 214 (214) T COG5385 159 VPPKFLELHSG----EPPEEAVDAHSVQPYYTLLLAEEAGMTISVHATAER-IVFTAWVVA 214 (214) T ss_pred CCHHHHHHHCC----CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCE-EEEEEECCC T ss_conf 79899865059----984224787530399999999970986899963643-799975149 No 101 >TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex .. Probab=97.86 E-value=6.4e-05 Score=51.60 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=12.1 Q ss_pred CCCEEEE--EEEECCCCCE---EEEECCHHHHHH Q ss_conf 9818999--9735699868---999459579999 Q gi|255764476|r 396 NGQTLHV--IVTSNPRGGT---IWMFENLTVQVD 424 (792) Q Consensus 396 DGr~l~v--~~~~~p~Gg~---~~~~~DITE~~~ 424 (792) +|..+.. ...+.|.|-. .-+|.++=-|++ T Consensus 137 ~G~~~~~~~~p~~~~~GT~V~V~~LF~N~P~R~k 170 (367) T TIGR00585 137 EGKNIIEEIKPAPRPVGTTVEVRDLFYNLPVRRK 170 (367) T ss_pred CCCEEEECCCCCCCCCCCEEEEECCCCCCCHHHH T ss_conf 6873420025668898978997303158520268 No 102 >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Probab=97.85 E-value=0.0009 Score=43.71 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=71.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 99999999999999999851680058981-59928985257898736778775661015853389678999986125787 Q gi|255764476|r 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260 (792) Q Consensus 182 ~~~~~~L~~~~~~lr~llda~P~~vw~~D-~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~ 260 (792) .+...+|.++++.-|.++.++|.++.+.+ .||..+..|..-.... .++..++++++.+...... T Consensus 346 ~~~a~~l~e~e~fnr~~i~~apvg~~~l~~~dg~~~~~n~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 410 (947) T PRK10841 346 ESNALRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELAHNYL---------------NMLTHEDRQRLTQIICGQQ 410 (947) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHH---------------HHCCCCHHHHHHHHHHCCC T ss_conf 6778899878887788986177137999706886331038999987---------------6237552899999986137 Q ss_pred -EEEEEEEEEECCEEEEEEEEEEECCC----CEEEEEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf -03457888656907899999763289----5299983045899988788999999843 Q gi|255764476|r 261 -NFCETVSTLEHGNNKSYKIVRVLNSF----GEAGIAIDVSKEITVNDQLTHTYEILHN 314 (792) Q Consensus 261 -~~~~~~~~~~~G~rr~~~v~~~~~~~----G~~Gia~DITErk~ae~aLrr~~e~Ld~ 314 (792) .+.+ +..+..+.+.++-++... -...+.+|||+||++|++|++.++.-|+ T Consensus 411 ~~~~~----~~~~~~~~l~~~~~~~ry~~~~v~~c~~~Disar~~~e~~L~~a~~AAE~ 465 (947) T PRK10841 411 VNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQ 465 (947) T ss_pred CCCEE----EEECCCCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHH T ss_conf 88348----99359857999986531268607999998540789999999999999999 No 103 >pfam10090 DUF2328 Uncharacterized protein conserved in bacteria (DUF2328). Members of this family of hypothetical bacterial proteins have no known function. Probab=97.79 E-value=0.0034 Score=39.78 Aligned_cols=171 Identities=14% Similarity=0.135 Sum_probs=109.1 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999735777889989999999999999999999999999988514983000233069999999999999999848 Q gi|255764476|r 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 (792) Q Consensus 586 ~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~ 665 (792) +|....|||.++.. ..+ ++.++-|.+|+.....- |.|.|+-=|.-. .-+.+|..++-.-+... +... T Consensus 3 AI~NGLELL~~~~~--~~~--~~~m~LI~~Sa~~A~aR----l~F~RlAfGaag-~~~~i~~~e~~~~~~~~----~~~~ 69 (181) T pfam10090 3 AIVNGLELLDDEGD--PEM--GPEMALIRESARNASAR----LRFFRLAFGAAG-AGQQIDLAEAKSVLEGY----LAGG 69 (181) T ss_pred CHHHHHHHHCCCCC--CCC--HHHHHHHHHHHHHHHHH----HHHHHHHHCCCC-CCCCCCHHHHHHHHHHH----HHCC T ss_conf 12555888707898--641--68999999999999999----999999808468-88856999999999999----8388 Q ss_pred CCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECC--CCCCHHHHHHHCCCCE Q ss_conf 96899995698608998789999999999886775388868899999987998999999788--9789778654148837 Q gi|255764476|r 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG--SSIPEDMCKSVFNRFV 743 (792) Q Consensus 666 ~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G--~GI~~e~~~riF~~F~ 743 (792) .+++...++.+. =+....+.++||+-=+....|.||+|+|++ ..++...++|+=+| ..++|+..+-+=.. T Consensus 70 r~~l~W~~~~~~-----~~k~~vklllnl~l~~~~AlprGG~i~V~~-~~~~~~~~~v~a~g~r~~~~~~~~~~L~g~-- 141 (181) T pfam10090 70 RITLDWQLERDL-----LPKPEVKLLLNLLLIAEDALPRGGEIDVGE-GSDGAGGWRVTAEGERLRIDPDLWAALAGG-- 141 (181) T ss_pred CEEEEECCCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCCEEEEEEEECCCCCCHHHHHHHCCC-- T ss_conf 538983587454-----887999999999999997547787789998-417897599999704678997899985699-- Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 626898888566379999999996198699997889 Q gi|255764476|r 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 (792) Q Consensus 744 ~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G 779 (792) ...........=-+....+.+..|++|.++.... T Consensus 142 --~~~~~l~~~~VQ~~~l~~la~~~G~~l~~~~~~~ 175 (181) T pfam10090 142 --APEEELDARNVQFYLLPLLAREAGGTLSYEITED 175 (181) T ss_pred --CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf --9877899876499999999998699117886497 No 104 >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Probab=97.69 E-value=0.0014 Score=42.42 Aligned_cols=126 Identities=14% Similarity=0.072 Sum_probs=58.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHCCCC Q ss_conf 9999999999999999998516800589815992898525789873677877566101585-338967899998612578 Q gi|255764476|r 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALE 259 (792) Q Consensus 181 l~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~~~~~~~~~~~~ 259 (792) .+.++..+..+..+|.+++-.+.++|...|..|+++.+|..-.++. +.+.+++.+... +++.-.+........... T Consensus 99 ~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L---~~~~E~~~~~~i~elL~i~d~y~~~dL~e~~ 175 (459) T COG5002 99 VQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKML---GVSKEDALGRSILELLKIEDTYTFEDLVEKN 175 (459) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHH---CCCHHHHHCCCHHHHHCCCCCEEHHHHHHCC T ss_conf 9999876788888899899987076576457786899350799984---8677877165378885775430288887259 Q ss_pred CEEEEEEEEEECCEEEEEEE------EEEECCCCEEEEEEEHHHHHHHHHHHHHHHHH Q ss_conf 70345788865690789999------97632895299983045899988788999999 Q gi|255764476|r 260 KNFCETVSTLEHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311 (792) Q Consensus 260 ~~~~~~~~~~~~G~rr~~~v------~~~~~~~G~~Gia~DITErk~ae~aLrr~~e~ 311 (792) ....-..+ ..++-..+++ .....-.|.+.+..|+||+++.|+++|.+... T Consensus 176 ~s~lld~~--~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRefvan 231 (459) T COG5002 176 DSLLLDSS--DEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERREFVAN 231 (459) T ss_pred CCEEEEEC--CCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH T ss_conf 82898604--788637999988888511466440699873143878889999999886 No 105 >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Probab=97.57 E-value=0.0034 Score=39.79 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=44.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCH Q ss_conf 878899999984308959998489808985368885509997896049987 Q gi|255764476|r 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352 (792) Q Consensus 302 e~aLrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~ 352 (792) |++.++....||.+++||...|.++++.++|+++++++|++.+.+.++|.. T Consensus 76 Er~~~~L~alLdsl~dgV~svD~~G~I~~~N~aa~~i~~~~~~~~~G~~i~ 126 (513) T PRK10820 76 EREHLALSALLEALPEPVLSIDMKSKVELANPASCQLFGQSEERLRNHTAA 126 (513) T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHH T ss_conf 468889999997389978998599819976399999849896887797999 No 106 >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Probab=97.36 E-value=0.00062 Score=44.84 Aligned_cols=127 Identities=12% Similarity=0.041 Sum_probs=60.3 Q ss_pred EEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCCCE-------EEEEEECC----- Q ss_conf 99981799700141341232189832023444321189--46789899999999853965-------89999868----- Q gi|255764476|r 83 TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK--FHHYIKLSKATEKLRKEGQS-------FDLVAETQ----- 148 (792) Q Consensus 83 ~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~--p~~a~~l~~ai~~l~~~g~~-------f~l~~~t~----- 148 (792) |.+|.|+-...+|.++ -.|++.++..+.. ...-. -.+..+| ..+..+.-+||. -.++++++ T Consensus 45 I~ve~gG~~~I~V~DN---G~Gi~~~Dl~la~-~rHaTSKI~~~~DL-~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~ 119 (638) T COG0323 45 IEVEGGGLKLIRVRDN---GSGIDKEDLPLAL-LRHATSKIASLEDL-FRIRTLGFRGEALASIASVSRLTITSRTAEAS 119 (638) T ss_pred EEEECCCEEEEEEEEC---CCCCCHHHHHHHH-HCCCCCCCCCHHHH-HHHHCCCCCHHHHHHHHHHHEEEEEECCCCCC T ss_conf 9993598018999889---9999989999998-65146457865568-77435673387799988754448994167767 Q ss_pred CCEEEEEEEEE-----------ECCEEEEEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEE Q ss_conf 97299983045-----------57548998740-1068999999999999999999999999851680058981599289 Q gi|255764476|r 149 NDCAIKIEGRV-----------SGSCAFLRILS-LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216 (792) Q Consensus 149 ~g~~i~~~Gr~-----------~g~~a~~r~~d-~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~ 216 (792) .|..+.++|.. .|..+.++ | +-+.....-=++...+++..-.+.++.+.=+-|..-|..--+|++. T Consensus 120 ~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~--dLF~NtPaRrKflks~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~ 197 (638) T COG0323 120 EGTQIYAEGGGMEVTVKPAAHPVGTTVEVR--DLFYNTPARRKFLKSEKTEFGHITELINRYALAHPDISFSLSHNGKLR 197 (638) T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEEEH--HHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEE T ss_conf 638999628841123347779999899845--712558476654145389999999999998730797279999889041 No 107 >PRK11086 sensory histidine kinase DcuS; Provisional Probab=97.33 E-value=0.013 Score=35.71 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=58.9 Q ss_pred HHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH--HHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 899999984308959998489808985368885509997--896049987999998975477766465788999999876 Q gi|255764476|r 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382 (792) Q Consensus 305 Lrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~--~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~ 382 (792) ++....+|+.+.+||...|.++++..+|+++++|++... ....+.+... + .|.. ...... T Consensus 220 ~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~~~~-~---------~~~~--------~l~~vl 281 (541) T PRK11086 220 FEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTDVHS-W---------SPVS--------RLKEVL 281 (541) T ss_pred HHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHH-H---------CCCH--------HHHHHH T ss_conf 999999985300169997589879998499998743358874312551777-2---------7545--------599998 Q ss_pred HCCCCCCEEEECCCCCEEEEEEEECC-CC---CEEEEECCHHHHHHHHHHH Q ss_conf 24676502688789818999973569-98---6899945957999999999 Q gi|255764476|r 383 KSSETHKDTWHLPNGQTLHVIVTSNP-RG---GTIWMFENLTVQVDLETKY 429 (792) Q Consensus 383 ~~~~~~~~~w~l~DGr~l~v~~~~~p-~G---g~~~~~~DITE~~~le~~~ 429 (792) ....+..+.-..-+|+.+-+...|.. .| |.+.+|+|+||.+++++++ T Consensus 282 ~~~~~~~d~e~~~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L 332 (541) T PRK11086 282 RTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRL 332 (541) T ss_pred HCCCCCCEEEEEECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHH T ss_conf 448853107999899899999777654890689999984427899999999 No 108 >smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press). Probab=97.29 E-value=0.00044 Score=45.84 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=18.3 Q ss_pred HHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCC Q ss_conf 996203432899689848864058887828987894389 Q gi|255764476|r 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 (792) Q Consensus 439 ~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~ 477 (792) .++++++++.+.+.+|++.++|+++++++|++++++.++ T Consensus 6 ~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~ 44 (67) T smart00091 6 ILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGK 44 (67) T ss_pred HHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC T ss_conf 999655798588699948998859999889099999599 No 109 >cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. Probab=97.23 E-value=0.0031 Score=40.04 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=19.0 Q ss_pred CCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCC Q ss_conf 343289968984886405888782898789438983 Q gi|255764476|r 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 (792) Q Consensus 444 ~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~ 479 (792) ++++.+.+.+|++.++|+++++++|++++++.+++. T Consensus 2 ~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~ 37 (103) T cd00130 2 PDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSL 37 (103) T ss_pred CEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCH T ss_conf 628999979898999988999987988789169965 No 110 >COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms] Probab=97.16 E-value=0.02 Score=34.51 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=43.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCC Q ss_conf 59579999999999999999999962034328996898488640588878289878943898 Q gi|255764476|r 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478 (792) Q Consensus 417 ~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~ 478 (792) .|+++....+..+.......+..+++.++++.+++.+|++.++|+++.+++|++........ T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~ 156 (232) T COG2202 95 RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRG 156 (232) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCC T ss_conf 11577888999987579999999956896799990999899975899998697989982776 No 111 >TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent. Probab=97.00 E-value=0.0026 Score=40.54 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=74.3 Q ss_pred HHHHHHHHHHHHHHCCC---CC-CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHH Q ss_conf 99999999886775388---86-889999998799899999978897897786541488376268988885663799999 Q gi|255764476|r 687 LLQIFSKILSNAMDFSS---KG-STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 (792) Q Consensus 687 L~QVl~NLl~NAik~~~---~g-g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~ 762 (792) |+=...-=++||+||+= +. |.|.|+-.--++.+.+.|+|+|--++-|....=.-||-..++...-+=-||||.+.- T Consensus 44 ~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyEDklev~vsD~G~SFD~d~~k~~lGPyd~~~~i~~L~eGGLGLFLie 123 (161) T TIGR01924 44 LKIAVSEACTNAVKHAYKEEENVGEISIEFEIYEDKLEVIVSDEGDSFDLDTKKQELGPYDKSEDIDQLREGGLGLFLIE 123 (161) T ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHH T ss_conf 67766555303311223089836789988878875789998207864111002532589795787543201771366451 Q ss_pred HHHHHCCCEEEEEEECCCCEEEEEE Q ss_conf 9999619869999788994399999 Q gi|255764476|r 763 SFINLHGGHVSISSSDEGVTTINCR 787 (792) Q Consensus 763 ~iVe~hgG~I~v~S~~G~Gttf~v~ 787 (792) ++.. .|.|....|.--..|=+ T Consensus 124 tLMD----~V~~~~~sGV~v~MTKY 144 (161) T TIGR01924 124 TLMD----EVKVYEDSGVTVAMTKY 144 (161) T ss_pred CCCC----EEEEEECCCEEEEEEEE T ss_conf 0376----16998328608988642 No 112 >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Probab=96.98 E-value=0.02 Score=34.53 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=76.8 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCEEEEC--HHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEE Q ss_conf 99999999999851680058981599289852--5789873677877566101585338967899998612578703457 Q gi|255764476|r 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWAN--ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265 (792) Q Consensus 188 L~~~~~~lr~llda~P~~vw~~D~dGri~~vN--~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 265 (792) .+-..+.+..++...+..+.+.|.+|.+++.. ..+....+..+. ..+...-+ ...-+.+.+...... T Consensus 57 a~p~l~~l~~~l~~~~~~v~l~D~~G~vL~~~G~~~~~~~~~~~~~------~~G~~wsE-----~~~GTNaiGtaL~~~ 125 (639) T PRK11388 57 GQAALEDAYEYMEPRECALLILDETGCILSRNGDPQTLQQLSALGF------NDGTYCAE-----GIIGTNALSLAAISG 125 (639) T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCC------CCCCEEEE-----CCCCCCHHHHHHHHC T ss_conf 9999999999866798399999899529998359889889996697------67864222-----588865899999749 Q ss_pred EEEEECCEEEEE------EEEEEEC--CCCE-EEEEEEHHH----------------HHHHHHHHH-------------H Q ss_conf 888656907899------9997632--8952-999830458----------------999887889-------------9 Q gi|255764476|r 266 VSTLEHGNNKSY------KIVRVLN--SFGE-AGIAIDVSK----------------EITVNDQLT-------------H 307 (792) Q Consensus 266 ~~~~~~G~rr~~------~v~~~~~--~~G~-~Gia~DITE----------------rk~ae~aLr-------------r 307 (792) .++.+.|..+++ .....|+ +.|. +|+ +|||- -+..|..|. . T Consensus 126 ~pv~V~g~EHf~~~~~~~sC~aaPI~d~~G~l~Gv-ldlt~~~~~~~~~~l~lv~~~a~~Ie~~L~~~~~~~~~~~~l~~ 204 (639) T PRK11388 126 QPVQTMGDQHFKQALHNWAFCATPVFDSKGRLTGT-IALACPVEQTSAADLPLTLAIAREVGNLLLTDSLLAESNRHLNQ 204 (639) T ss_pred CEEEECHHHHHHHHCCCCEEEEEEEECCCCCEEEE-EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 83898156767675058867775678899978999-97678766678435999999999999999999999999999877 Q ss_pred HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCC Q ss_conf 9999843089599984898089853688855099978960499 Q gi|255764476|r 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350 (792) Q Consensus 308 ~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p 350 (792) ....++...+|+..+|.++++.+.|+..+++++++...+.+++ T Consensus 205 ~~~~l~~~~~gvla~d~~G~i~~~N~~A~~~L~~~~~~~~g~~ 247 (639) T PRK11388 205 LNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRA 247 (639) T ss_pred HHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHCCCHHHHCCCC T ss_conf 6888648876289988999174004899988598845644764 No 113 >COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms] Probab=96.98 E-value=0.029 Score=33.36 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=26.4 Q ss_pred EEHHHHHHHHHHHHH----HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHH Q ss_conf 304589998878899----9999843089599984898089853688855099978 Q gi|255764476|r 293 IDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344 (792) Q Consensus 293 ~DITErk~ae~aLrr----~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~ 344 (792) .|+++.+..+.+++. +...++.++.++.++|.++++.++|+++++++|+... T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~ 150 (232) T COG2202 95 RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPE 150 (232) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHH T ss_conf 11577888999987579999999956896799990999899975899998697989 No 114 >smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press). Probab=96.96 E-value=0.0014 Score=42.31 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=33.2 Q ss_pred HHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHHHHHH Q ss_conf 999998516800589815992898525789873677877566101585-33896789999 Q gi|255764476|r 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRM 252 (792) Q Consensus 194 ~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~~~~~ 252 (792) +++.+++++|.++|+.|.+|+++++|++++++++ ++.++.++... +++.+..+... T Consensus 2 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g---~~~~e~~g~~~~~~~~~~~~~~~ 58 (67) T smart00091 2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLG---YSPEELIGKSLLELIHPEDREEV 58 (67) T ss_pred HHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHC---CCHHHHCCCCHHHHCCHHHHHHH T ss_conf 7999999655798588699948998859999889---09999959989994699899999 No 115 >cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. Probab=96.94 E-value=0.011 Score=36.36 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=27.6 Q ss_pred CCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCH Q ss_conf 08959998489808985368885509997896049987 Q gi|255764476|r 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352 (792) Q Consensus 315 l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~ 352 (792) +++++.++|.++++.|+|+++++++|+++..+.+++.. T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~ 38 (103) T cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLL 38 (103) T ss_pred CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHH T ss_conf 96289999798989999889999879887891699654 No 116 >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Probab=96.75 E-value=0.016 Score=35.17 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHH Q ss_conf 99999999999988514983000233069999999999999 Q gi|255764476|r 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 (792) Q Consensus 619 ~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~ 659 (792) .+..+++-|.|-|.+.+|- ++ -|..+.+...-.+++ T Consensus 630 ~~kd~a~lL~D~AlL~eG~-~l----eDP~~fa~Rin~Ll~ 665 (701) T PTZ00272 630 AVKDLVFLLFDTSLLTSGF-QL----EDPTGYAERINRMIK 665 (701) T ss_pred HHHHHHHHHHHHHHHHCCC-CC----CCHHHHHHHHHHHHH T ss_conf 8999999999888986899-97----798999999999999 No 117 >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Probab=96.53 E-value=0.043 Score=32.21 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=53.0 Q ss_pred HHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCC-----CCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-EE Q ss_conf 99998516800589815992898525789873677-----8775661015853389678999986125787034578-88 Q gi|255764476|r 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV-ST 268 (792) Q Consensus 195 lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~-----~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~ 268 (792) -..++|+++.||.+.|.+|.|.|+|+|++..+..+ +....+.+.. .+..-.-+......+.++.+.. .. T Consensus 9 ~~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~-----gs~ll~ll~q~~~~~~~~~~~~v~l 83 (363) T COG3852 9 AGAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPF-----GSLLLSLLDQVLERGQPVTEYEVTL 83 (363) T ss_pred CHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCC-----CCHHHHHHHHHHHHCCCCCCCEEEE T ss_conf 17687455785699827782896088899999977888824877887177-----7288999989998358851010244 Q ss_pred EECCEEEEEEEEEEECC--CCEE Q ss_conf 65690789999976328--9529 Q gi|255764476|r 269 LEHGNNKSYKIVRVLNS--FGEA 289 (792) Q Consensus 269 ~~~G~rr~~~v~~~~~~--~G~~ 289 (792) +..|.-..++++..|++ .|.+ T Consensus 84 ~~~g~~~~v~~~v~~v~~~~G~v 106 (363) T COG3852 84 VILGRSHIVDLTVAPVPEEPGSV 106 (363) T ss_pred EECCCCCEEEEEEEECCCCCCEE T ss_conf 20786523789986226899748 No 118 >PRK05218 heat shock protein 90; Provisional Probab=96.22 E-value=0.0082 Score=37.15 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH Q ss_conf 99999999999885149830002330699999999999 Q gi|255764476|r 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 (792) Q Consensus 620 l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~ 657 (792) +..+++.|.|.|.+.+|- .++ |+...+..+-.+ T Consensus 579 ~~~~~~~Lyd~AlL~~G~-~~~----dp~~f~~r~~~l 611 (612) T PRK05218 579 FKDLAELLYDQALLAEGG-SLE----DPAAFVKRLNEL 611 (612) T ss_pred HHHHHHHHHHHHHHHCCC-CCC----CHHHHHHHHHHH T ss_conf 999999999999986899-961----899999999975 No 119 >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Probab=96.12 E-value=0.1 Score=29.67 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=30.0 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCC Q ss_conf 9999999851680058981599289852578987367 Q gi|255764476|r 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228 (792) Q Consensus 192 ~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~ 228 (792) ...+..++++.+.++...|.+|+++++|+.-.++++. T Consensus 202 l~~~~~~l~~~~~gvla~d~~G~i~~~N~~A~~~L~~ 238 (639) T PRK11388 202 LNQLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRL 238 (639) T ss_pred HHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHCC T ss_conf 8776888648876289988999174004899988598 No 120 >pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Probab=96.11 E-value=0.034 Score=32.95 Aligned_cols=75 Identities=11% Similarity=0.085 Sum_probs=38.6 Q ss_pred EEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEE Q ss_conf 88640588878289878943898388988777630256114-68899874026544311568999725038--8899997 Q gi|255764476|r 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIP 532 (792) Q Consensus 456 ~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~p 532 (792) +.++|+++++|+||+++++.+.+ +.+.+.+.| +|.+. ...+...... .......+.|+.++||++ +...+.| T Consensus 1 v~y~s~~~~~i~G~~~~e~~~~~--~~~~~~ihp--dD~~~~~~~~~~~~~~-~~~~~~~e~R~~~~dG~~~wi~~~~~~ 75 (90) T pfam08447 1 IIYWSPRFEEILGYTPEELKSSY--EDWLDLVHP--EDRERVRRALQEFSLK-KGEPYSGEYRIRRKDGEYRWVEARGRP 75 (90) T ss_pred CEEECHHHHHHHCCCCHHCCCCH--HHHHHHCCC--HHHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCEEEEEEEEEE T ss_conf 99999899998499901107998--899987190--5688999887888860-587404689998159939999999999 Q ss_pred CCC Q ss_conf 058 Q gi|255764476|r 533 LPN 535 (792) Q Consensus 533 l~d 535 (792) +.| T Consensus 76 ~~d 78 (90) T pfam08447 76 IRD 78 (90) T ss_pred EEC T ss_conf 999 No 121 >smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE Probab=95.95 E-value=0.0021 Score=41.23 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=7.3 Q ss_pred EEEEECCCCCE Q ss_conf 99735699868 Q gi|255764476|r 402 VIVTSNPRGGT 412 (792) Q Consensus 402 v~~~~~p~Gg~ 412 (792) |...++++||. T Consensus 237 vN~I~T~~GGT 247 (594) T smart00433 237 VNNIATTEGGT 247 (594) T ss_pred EEEEECCCCCC T ss_conf 31478899984 No 122 >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Probab=95.58 E-value=0.027 Score=33.59 Aligned_cols=44 Identities=11% Similarity=0.226 Sum_probs=22.9 Q ss_pred CCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 754899874010689999999999999999999999998516800589815992 Q gi|255764476|r 161 GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214 (792) Q Consensus 161 g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGr 214 (792) |....+.+++-... =..+.++++-...+. |.+|.||.+....+. T Consensus 171 GT~I~L~Lk~~e~e-------fl~~~rl~~ivkkYS---d~i~~PI~~~~~~~~ 214 (623) T COG0326 171 GTEITLHLKEEEDE-------FLEEWRLREIVKKYS---DHIAYPIYIEGEKEK 214 (623) T ss_pred CCEEEEEECCCHHH-------HHHHHHHHHHHHHHH---CCCCCCEEEEEECCC T ss_conf 85799998876677-------740667999999873---254316699642255 No 123 >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Probab=95.56 E-value=0.17 Score=28.13 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=57.4 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCH-HHHHHHHHHCCCCCEEEE Q ss_conf 9999999999998516800589815992898525789873677877566101585-33896-789999861257870345 Q gi|255764476|r 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKE-EIKKRMISSSALEKNFCE 264 (792) Q Consensus 187 ~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~-~~~~~~~~~~~~~~~~~~ 264 (792) ++..-.+...++|+++-++|...|..|.++.+|++-+++++..... .+.+++.. +.+.+ ..-..+ ...+.+.+. T Consensus 209 EIa~l~~er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~-~~~ig~~i~~v~~p~~~l~~v---l~~~~~~~~ 284 (537) T COG3290 209 EIATLLEERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPS-GDPIGRSIVEVLPPDSDLPEV---LETGKPQHD 284 (537) T ss_pred HHHHHHHHHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCC-CCCCCCCCEEEECCCCCCHHH---HHCCCCCCC T ss_conf 9999999999999876362899878985761128899984656767-564466103761563675778---750776311 Q ss_pred EEEEEECCEEEEEEEEEEEC--C---CCEEEEEEEHHHHHHHHHHHHHHHH Q ss_conf 78886569078999997632--8---9529998304589998878899999 Q gi|255764476|r 265 TVSTLEHGNNKSYKIVRVLN--S---FGEAGIAIDVSKEITVNDQLTHTYE 310 (792) Q Consensus 265 ~~~~~~~G~rr~~~v~~~~~--~---~G~~Gia~DITErk~ae~aLrr~~e 310 (792) +. ..++| +++-+...|. . .|.+-..+|-||.+..-++|...+. T Consensus 285 ~e-~~~ng--~~~i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~vr~ 332 (537) T COG3290 285 EE-IRING--RLLVANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQ 332 (537) T ss_pred HH-HHCCC--EEEEEEECCEEECCEEEEEEEEEECHHHHHHHHHHHHHHHH T ss_conf 34-41477--59999852378889776899987637789999999998999 No 124 >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Probab=95.25 E-value=0.17 Score=28.10 Aligned_cols=87 Identities=17% Similarity=0.062 Sum_probs=53.0 Q ss_pred HHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHCCCCCEEEEEEEEEECC Q ss_conf 999998516800589815992898525789873677877566101585-3389678999986125787034578886569 Q gi|255764476|r 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHG 272 (792) Q Consensus 194 ~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~G 272 (792) .|.++++++|+||+..|-.|.+..+|+|++..++.. .+...+... .+++...-.+. ...+.......+++++| T Consensus 81 ~L~aLL~al~~pVlsvd~kg~v~~aNpAa~~l~~~~---~~~~~g~~~~~l~~~~nf~~~---l~~~~~~~~~~~V~~~g 154 (511) T COG3283 81 ALSALLEALPEPVLSVDMKGKVDMANPAACQLFGRK---EDRLRGHTAAQLINGFNFLRW---LEGEPQRSHNEHVVING 154 (511) T ss_pred HHHHHHHHCCCCEEEECCCCCEEECCHHHHHHHCCC---HHHHCCCCHHHHCCCCCHHHH---HHCCCCCCCCCEEEECC T ss_conf 999999718875687527774332588999984888---354057569986386778999---84588777774389816 Q ss_pred EEEEEEEEEEECCC Q ss_conf 07899999763289 Q gi|255764476|r 273 NNKSYKIVRVLNSF 286 (792) Q Consensus 273 ~rr~~~v~~~~~~~ 286 (792) ....++++.+.... T Consensus 155 q~~lmeitPv~~~~ 168 (511) T COG3283 155 QNFLMEITPVYLQD 168 (511) T ss_pred HHHEEECCCEEECC T ss_conf 22302224300058 No 125 >PRK05644 gyrB DNA gyrase subunit B; Validated Probab=95.17 E-value=0.0027 Score=40.49 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=5.8 Q ss_pred HHHHHHHCCCC Q ss_conf 77865414883 Q gi|255764476|r 732 EDMCKSVFNRF 742 (792) Q Consensus 732 ~e~~~riF~~F 742 (792) .+..+++|+-. T Consensus 691 a~~ad~~f~~L 701 (725) T PRK05644 691 AIAADEIFTTL 701 (725) T ss_pred HHHHHHHHHHH T ss_conf 99999999986 No 126 >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Probab=95.12 E-value=0.094 Score=29.91 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=46.0 Q ss_pred HHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 999999843089599984898089853688855099978960499879999989754777664657889999 Q gi|255764476|r 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377 (792) Q Consensus 306 rr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~ 377 (792) ......|+.++++|.-.|-.+.+...|+|++++|+.+++-+.+++.-. + -+..+|..|-++ T Consensus 80 l~L~aLL~al~~pVlsvd~kg~v~~aNpAa~~l~~~~~~~~~g~~~~~-l----------~~~~nf~~~l~~ 140 (511) T COG3283 80 LALSALLEALPEPVLSVDMKGKVDMANPAACQLFGRKEDRLRGHTAAQ-L----------INGFNFLRWLEG 140 (511) T ss_pred HHHHHHHHHCCCCEEEECCCCCEEECCHHHHHHHCCCHHHHCCCCHHH-H----------CCCCCHHHHHHC T ss_conf 799999971887568752777433258899998488835405756998-6----------386778999845 No 127 >PTZ00130 heat shock protein 90; Provisional Probab=94.31 E-value=0.095 Score=29.85 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9999999999999851680058981 Q gi|255764476|r 186 KKLSNHISVFKVLFDSLDFLVWHRD 210 (792) Q Consensus 186 ~~L~~~~~~lr~llda~P~~vw~~D 210 (792) .+++.-...+. +-++.||.+.. T Consensus 259 ~rik~lVkKYS---~FI~fPI~l~~ 280 (824) T PTZ00130 259 KKLMDLISKYS---QFIQFPIYLLH 280 (824) T ss_pred HHHHHHHHHHC---CCCCCCEEEEC T ss_conf 88999999851---36652258720 No 128 >PTZ00108 DNA topoisomerase II; Provisional Probab=94.13 E-value=0.057 Score=31.39 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=9.5 Q ss_pred EEEECCCCEEEEECH Q ss_conf 289968984886405 Q gi|255764476|r 447 VAVFGPDGRIKLSNP 461 (792) Q Consensus 447 vav~~~dgr~~~~N~ 461 (792) +..|+++|+|.-++. T Consensus 1032 m~~Fd~~g~i~kY~~ 1046 (1506) T PTZ00108 1032 MTLFDPNLKLQRYST 1046 (1506) T ss_pred EEEECCCCCEEECCC T ss_conf 689889999664599 No 129 >PRK05559 DNA topoisomerase IV subunit B; Reviewed Probab=94.02 E-value=0.0059 Score=38.14 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=7.4 Q ss_pred EEEEECCCCCEE Q ss_conf 997356998689 Q gi|255764476|r 402 VIVTSNPRGGTI 413 (792) Q Consensus 402 v~~~~~p~Gg~~ 413 (792) |...++++||.- T Consensus 270 VN~I~T~~GGTH 281 (633) T PRK05559 270 VNLIPTPDGGTH 281 (633) T ss_pred ECCCCCCCCCCH T ss_conf 887057999876 No 130 >KOG3558 consensus Probab=93.95 E-value=0.26 Score=26.85 Aligned_cols=63 Identities=6% Similarity=0.011 Sum_probs=34.5 Q ss_pred HHHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 986069978999817997001413412321898320234443211894678989999999985 Q gi|255764476|r 74 SLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK 136 (792) Q Consensus 74 all~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l~~ 136 (792) -+|.+-++-+.+.+.++...+|+-+...++|+.|-+....+.-+++||-|..++.+.+..... T Consensus 123 ~iLqsLDGFVm~l~~dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~DheE~~eqL~l~~~ 185 (768) T KOG3558 123 HILQSLDGFVMALTQDGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCDHEEIAEQLGLRLT 185 (768) T ss_pred HHHHHCCCEEEEECCCCCEEEEECHHHHHHCCCCEEEECCHHHHCCCCCCHHHHHHHHCCCCC T ss_conf 487632443899816787799820357661711024305413212576678999987433568 No 131 >TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome. Probab=93.71 E-value=0.051 Score=31.73 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9988889999999999999999999966663225899999999973577788 Q gi|255764476|r 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 (792) Q Consensus 550 ~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~ 601 (792) -++..|..-..++.+.++-++ |+..|+-....+...+.-+.+++..+...+ T Consensus 588 L~~~~Le~~~~~~~~~~k~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (818) T TIGR01059 588 LVGELLEDLVNAYLELEKRKN-LINRLERKAIRFSEELLIYQDLLEKELLEY 638 (818) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHCHHHHCH T ss_conf 999999999999998863144-799998740435578887555302222001 No 132 >COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Probab=93.52 E-value=0.19 Score=27.78 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=53.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHH-------------HCCCCEECCCCCCCCC Q ss_conf 999999998867753888688999999879989999997889789778654-------------1488376268988885 Q gi|255764476|r 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS-------------VFNRFVSNAHRGQRRG 753 (792) Q Consensus 687 L~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~r-------------iF~~F~~~~~~~~~~G 753 (792) +.-+...|+.||+||...| .|.|.+........+.|++--++=....-++ ..++-+.....+...| T Consensus 64 vgYl~NELiENAVKfra~g-eIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLlieRiEanA~~~d~~g 142 (184) T COG5381 64 VGYLANELIENAVKFRATG-EIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLIERIEANALESDCEG 142 (184) T ss_pred HHHHHHHHHHHHHCCCCCC-CEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 8898999998666015798-589999831406888730357885188899999998607929999999986035888765 Q ss_pred CCHHHHHHHHHHHHCCCEEEE Q ss_conf 663799999999961986999 Q gi|255764476|r 754 VGLGLSIVESFINLHGGHVSI 774 (792) Q Consensus 754 tGLGLsiv~~iVe~hgG~I~v 774 (792) +||||-.--+=-..|=|+|-+ T Consensus 143 SglGLLTlmsDYgA~faWiF~ 163 (184) T COG5381 143 SGLGLLTLMSDYGAQFAWIFV 163 (184) T ss_pred CCCCCEEHHHHHCCEEEEEEE T ss_conf 664100012342332689983 No 133 >PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional Probab=93.47 E-value=0.51 Score=24.84 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=19.2 Q ss_pred HHHHHHHCCCCEEEECCCCCEEEECHHHHHHH Q ss_conf 99998516800589815992898525789873 Q gi|255764476|r 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226 (792) Q Consensus 195 lr~llda~P~~vw~~D~dGri~~vN~A~~~~~ 226 (792) +.++++..|.|+++++.+|.++++|.+|.+.. T Consensus 21 l~~~i~~~~~PvCIRn~sG~Fi~~N~~F~~~F 52 (220) T PRK13719 21 LTAFIDDYSIPACIRNEDGSFIFFNTLFSKEF 52 (220) T ss_pred HHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH T ss_conf 99999718996489778998301527899998 No 134 >KOG1979 consensus Probab=93.41 E-value=0.16 Score=28.32 Aligned_cols=29 Identities=24% Similarity=0.262 Sum_probs=14.3 Q ss_pred EEEECCCCCCCEEECCCHHHCCCCCCHHHHHH Q ss_conf 99981799700141341232189832023444 Q gi|255764476|r 83 TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114 (792) Q Consensus 83 ~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 114 (792) +++-+|+-..-|+..+ ..|.-.++..+++ T Consensus 49 V~vk~GGLKLlQisDn---G~GI~reDl~ilC 77 (694) T KOG1979 49 VLVKDGGLKLLQISDN---GSGIRREDLPILC 77 (694) T ss_pred EEEECCCEEEEEEECC---CCCCCHHHHHHHH T ss_conf 9981597689998328---9861522468998 No 135 >PTZ00109 DNA gyrase subunit b; Provisional Probab=92.67 E-value=0.032 Score=33.11 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=14.0 Q ss_pred HHHHHH-HHHHCCCEEEEEEECCCCEEEEEEEEE Q ss_conf 999999-998539658999986897299983045 Q gi|255764476|r 127 LSKATE-KLRKEGQSFDLVAETQNDCAIKIEGRV 159 (792) Q Consensus 127 l~~ai~-~l~~~g~~f~l~~~t~~g~~i~~~Gr~ 159 (792) ++.+++ .+...+....+++.....-.|.-.||- T Consensus 94 vDNSvDEalaG~c~~I~V~l~~DgSvtV~DnGRG 127 (941) T PTZ00109 94 IDNSVDEYNNFECNEIKIVIHKDDSVTIEDNGRG 127 (941) T ss_pred HHCHHHHHHCCCCCEEEEEEECCCCEEEEECCCC T ss_conf 1256879861899668999947997899889976 No 136 >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Probab=91.92 E-value=0.043 Score=32.23 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=5.8 Q ss_pred EEEECCCCCE Q ss_conf 9735699868 Q gi|255764476|r 403 IVTSNPRGGT 412 (792) Q Consensus 403 ~~~~~p~Gg~ 412 (792) ...|+++||. T Consensus 274 NnI~T~eGGT 283 (635) T COG0187 274 NNIPTREGGT 283 (635) T ss_pred CCCCCCCCCH T ss_conf 5855899860 No 137 >KOG1978 consensus Probab=90.89 E-value=0.25 Score=26.95 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 99999999999998516800589 Q gi|255764476|r 186 KKLSNHISVFKVLFDSLDFLVWH 208 (792) Q Consensus 186 ~~L~~~~~~lr~llda~P~~vw~ 208 (792) ..+-.-.+.|..+--++-.++|- T Consensus 168 ~k~i~li~~y~li~~~ir~~~~n 190 (672) T KOG1978 168 VKLISLIQAYALISTAIKFLVSN 190 (672) T ss_pred HHHHHHHHHHHHHCCCCEEEEEE T ss_conf 66666677787631211013440 No 138 >KOG1229 consensus Probab=90.11 E-value=0.69 Score=23.95 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC Q ss_conf 9999999999985168005898159928985257898736778775661015853389 Q gi|255764476|r 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245 (792) Q Consensus 188 L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~ 245 (792) ++.-...| +.+|.-.+.|=+.|.|.-+.|||+||+++.++ ...+.++....-++ T Consensus 153 iRAcnalF-aaLD~c~eAiEI~~ddhViQYVNpAfE~mmG~---hkgEliGke~adlp 206 (775) T KOG1229 153 IRACNALF-AALDECDEAIEICDDDHVIQYVNPAFENMMGC---HKGELIGKEEADLP 206 (775) T ss_pred HHHHHHHH-HHHHHHHHHHEECCCHHHHHHHCHHHHHHHCC---HHHHHCCCCHHHCC T ss_conf 76418999-98862300320046346898735788863310---10212377222256 No 139 >KOG0355 consensus Probab=88.59 E-value=0.62 Score=24.27 Aligned_cols=56 Identities=9% Similarity=0.208 Sum_probs=26.6 Q ss_pred CHHHHHHHHHHHHHHHHH-------CCCCC-CEEEEEEE-EECCEEEEEEEECCCCCCHHHHHHH Q ss_conf 789999999999886775-------38886-88999999-8799899999978897897786541 Q gi|255764476|r 683 DRQRLLQIFSKILSNAMD-------FSSKG-STVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSV 738 (792) Q Consensus 683 D~~rL~QVl~NLl~NAik-------~~~~g-g~I~i~~~-~~~~~v~i~V~D~G~GI~~e~~~ri 738 (792) -+.-|.+-+.||-.|-+. |.-.. ..++.-.. ..++.+.-.--|.|--|+|+.++-| T Consensus 710 ge~sl~~ti~~l~q~~~gkdaa~~ryi~t~l~~~tr~~f~~~dd~ll~~~~~~~~~vep~y~pi~ 774 (842) T KOG0355 710 GEQSLMSTIVNLAQDFVGKDAASARYIFTKLSPLTRLLFPPADDLLLKYLNEDGQRVEPEYCPII 774 (842) T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCE T ss_conf 42769999998887505884023678988527365402788832676652257867175224414 No 140 >KOG1977 consensus Probab=88.47 E-value=1.3 Score=21.97 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=11.1 Q ss_pred CCCHHHHHHHHHHHHC Q ss_conf 5663799999999961 Q gi|255764476|r 753 GVGLGLSIVESFINLH 768 (792) Q Consensus 753 GtGLGLsiv~~iVe~h 768 (792) |-||-++=|-.||+.. T Consensus 1067 gD~L~~qEc~~lI~~L 1082 (1142) T KOG1977 1067 GDGLSLQECCRLIEAL 1082 (1142) T ss_pred CCCCCHHHHHHHHHHH T ss_conf 7765789999999988 No 141 >COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism] Probab=87.64 E-value=0.54 Score=24.69 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=5.6 Q ss_pred CCCEEEEEEE Q ss_conf 9818999973 Q gi|255764476|r 396 NGQTLHVIVT 405 (792) Q Consensus 396 DGr~l~v~~~ 405 (792) +|+.++|..+ T Consensus 54 KGk~iSimg~ 63 (236) T COG0813 54 KGKKISVMGH 63 (236) T ss_pred CCCEEEEEEE T ss_conf 3847899873 No 142 >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IPR005737 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram negative bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome. Probab=84.91 E-value=1 Score=22.84 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=27.4 Q ss_pred EECCCCCE-E---EEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 88789818-9---9997356998689994595799999999999999999999620343289 Q gi|255764476|r 392 WHLPNGQT-L---HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449 (792) Q Consensus 392 w~l~DGr~-l---~v~~~~~p~Gg~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav 449 (792) | +|+|.. + .|..-|++|||.- ..-|.+..-..++...|....++-|+-. T Consensus 266 W-~~~~~~~~~~SY~N~iPT~QGGTH--------~~GL~~~lL~a~~~f~E~~~~~P~~~~L 318 (647) T TIGR01055 266 W-LPEGGELLMESYVNLIPTIQGGTH--------VNGLRQGLLDALREFCEMRNLLPRGVKL 318 (647) T ss_pred E-CCCCCHHHHHCCCCCCCCCCCCCH--------HHHHHHHHHHHHHHHHHHHCCCCCEEEC T ss_conf 3-278840032041101578988710--------4578999999999988875188640221 No 143 >COG2461 Uncharacterized conserved protein [Function unknown] Probab=82.51 E-value=3 Score=19.62 Aligned_cols=108 Identities=9% Similarity=0.162 Sum_probs=60.5 Q ss_pred HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCEE Q ss_conf 9999962034328996898488640588878289878943898388988777630256114688998740265-443115 Q gi|255764476|r 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSL 514 (792) Q Consensus 436 q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~r~~~ 514 (792) ..+.+++|+--+...|.+++++++|+- .+||...+..++.+. ..|.|...- +.....+..+. +.+... T Consensus 292 ~naif~~lP~Ditfvdk~diV~ffs~~-~rif~rt~sviGr~v------~~chpPksv----~iv~ki~~~fksG~kd~~ 360 (409) T COG2461 292 LNAIFKHLPVDITFVDKNDIVRFFSGG-ERIFPRTPSVIGRRV------QLCHPPKSV----HIVEKILKDFKSGEKDFA 360 (409) T ss_pred HHHHHHHCCCCEEEECCCCEEEECCCC-CEECCCCHHHHCCCC------CCCCCCCHH----HHHHHHHHHHHCCCCCHH T ss_conf 999995388732785456627844896-320133767618715------578998427----899999998653774567 Q ss_pred EEEEEECCEE-EEEEEEEECCCCC---EEEECCCCHHHHHHHHH Q ss_conf 6899972503-8889999705887---66312320689999888 Q gi|255764476|r 515 QGTLELLSDS-VLEYSIIPLPNAQ---TMLTFVNVTDSVRAERA 554 (792) Q Consensus 515 ~~~~~~~dG~-~~~~~~~pl~dg~---~l~~~~DIT~~k~~E~a 554 (792) +.-+...|-. .+.|.++.--+|. +|-..+|||.-|+.|-+ T Consensus 361 efw~~~~~~~i~i~Y~av~de~ge~~g~le~~qdi~~i~~l~ge 404 (409) T COG2461 361 EFWINMGDKFIHIRYFAVKDEEGEYLGTLEVVQDITRIKELEGE 404 (409) T ss_pred HHHCCCCCCEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHCCCH T ss_conf 77455787358999999875888366542232203777742340 No 144 >KOG0019 consensus Probab=81.15 E-value=1.7 Score=21.31 Aligned_cols=10 Identities=10% Similarity=0.388 Sum_probs=6.2 Q ss_pred CCEEEECCCC Q ss_conf 0058981599 Q gi|255764476|r 204 FLVWHRDQAG 213 (792) Q Consensus 204 ~~vw~~D~dG 213 (792) -|+|.++++- T Consensus 243 KpiW~rnp~d 252 (656) T KOG0019 243 KAIWTMNPKE 252 (656) T ss_pred CCCCCCCCHH T ss_conf 7631369022 No 145 >KOG0020 consensus Probab=80.87 E-value=3.4 Score=19.23 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=19.1 Q ss_pred EEEECHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 899878999999999988677538886 Q gi|255764476|r 679 SFVADRQRLLQIFSKILSNAMDFSSKG 705 (792) Q Consensus 679 ~v~~D~~rL~QVl~NLl~NAik~~~~g 705 (792) .+.-|+..+.--+.|.+.-.+..+|.. T Consensus 724 f~L~d~~~fadrIe~~lr~sL~is~Da 750 (785) T KOG0020 724 FILQDTKDFADRIENMLRQSLNISPDA 750 (785) T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 402566788999999998525999421 No 146 >COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms] Probab=80.80 E-value=3.4 Score=19.21 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=54.4 Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEE Q ss_conf 99999999985168005898159928985257898736778775661015853389678999986125787034578886 Q gi|255764476|r 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269 (792) Q Consensus 190 ~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (792) +.+..+..+++++|.||-+.|.++++.|+|+--...+. . ..++.. .....+............ ..+. T Consensus 72 ~~~~~~~~al~nmPiGii~~~e~~~veW~Npf~~~if~---~---~~~~~~----~~~~~~~il~~~~~~~~~---~~~~ 138 (655) T COG3887 72 QAEKSLEEALTNMPIGIILFNETNKVEWVNPFASKIFN---K---NEIGES----LSELIPEILKQLARNDEK---QYIK 138 (655) T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHCC---H---HHHHHH----HHHHHHHHHHHHHCCCCC---EEEE T ss_conf 99989999998488239998688956886688997467---5---355566----777759999987357855---3899 Q ss_pred ECCEEEEEEEEEEECCCCEEEEEEEHHHHHHHHHHHHHH Q ss_conf 569078999997632895299983045899988788999 Q gi|255764476|r 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308 (792) Q Consensus 270 ~~G~rr~~~v~~~~~~~G~~Gia~DITErk~ae~aLrr~ 308 (792) .+. +.|++.-.+.. .+-+..|+|+..+.+++.+.. T Consensus 139 i~e--~~y~~~~~~~~--~liYf~DvT~~~~~~~~~~~~ 173 (655) T COG3887 139 INE--KKYDVYFDSDK--RLIYFFDVTEEEAIEEEYENS 173 (655) T ss_pred ECC--EEEEEEEECCC--CEEEEEECCHHHHHHHHHHCC T ss_conf 735--48999980688--779999560899999998604 No 147 >PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional Probab=72.35 E-value=5.7 Score=17.68 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=11.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 206899998888999999999 Q gi|255764476|r 544 NVTDSVRAERALTEKNEALRK 564 (792) Q Consensus 544 DIT~~k~~E~aL~e~~eale~ 564 (792) .+...+..|++|.+.+++|++ T Consensus 27 ~~~~q~~Le~eLe~~k~el~~ 47 (134) T PRK11677 27 KLRQQQALQYELEKNKAELEE 47 (134) T ss_pred CHHHHHHHHHHHHHHHHHHHH T ss_conf 116799999999999999999 No 148 >PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional Probab=63.02 E-value=8.7 Score=16.43 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=51.0 Q ss_pred CEEEEEECCCCCEEEECHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCEEEEEEEECCC Q ss_conf 68999956986089987899999999998867---------7538886---------88999999879989999997889 Q gi|255764476|r 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNA---------MDFSSKG---------STVILKAARDNGDFIFSVKNNGS 728 (792) Q Consensus 667 i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NA---------ik~~~~g---------g~I~i~~~~~~~~v~i~V~D~G~ 728 (792) -.+.+|+-.-.+.+..|+..|++++...+..+ -+|.|.| +.|.|.++.+.+.+.+.|-=.|. T Consensus 6 ~Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~gatil~~~~h~F~P~GvT~v~lLaESHisiHTwPE~g~aavDiftCg~ 85 (127) T PRK03124 6 RHVIAELYGCDFDKLNDMEFIEDIMVDAALKAGAEVREVAFHKFAPQGVSGVVVISESHLTIHTWPEHGYAAVDVFTCGD 85 (127) T ss_pred EEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECCCCCEEEEEEEECCC T ss_conf 09999998878366879999999999999984997987883865999689999940216899966768859999994599 Q ss_pred CCCHHHHHHHCCCC Q ss_conf 78977865414883 Q gi|255764476|r 729 SIPEDMCKSVFNRF 742 (792) Q Consensus 729 GI~~e~~~riF~~F 742 (792) .+.|+..-+....+ T Consensus 86 ~~~P~~a~~~L~~~ 99 (127) T PRK03124 86 RVDPWDAANYIAEG 99 (127) T ss_pred CCCHHHHHHHHHHH T ss_conf 99999999999998 No 149 >pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins. Probab=60.22 E-value=9.7 Score=16.10 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=22.6 Q ss_pred HCCCCEEEEC--CCCEEEEECHHHHHHHCCCHHHHCCCC Q ss_conf 2034328996--898488640588878289878943898 Q gi|255764476|r 442 HLSEGVAVFG--PDGRIKLSNPAFRSLWKTEENRLSPGT 478 (792) Q Consensus 442 ~l~e~vav~~--~dgr~~~~N~a~~~l~g~~~~~l~~~~ 478 (792) +.+.+|.-.+ +|-.+.|.|.+..+||+++-+++.+-| T Consensus 39 ~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lp 77 (148) T pfam08670 39 HHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQDLP 77 (148) T ss_pred CCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHCCC T ss_conf 399789976799897465414999999668899984596 No 150 >pfam06305 DUF1049 Protein of unknown function (DUF1049). This family consists of several hypothetical bacterial proteins of unknown function. Probab=59.86 E-value=9.8 Score=16.06 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 789999999999999999999999999999999999999999 Q gi|255764476|r 23 KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE 64 (792) Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~r~r~~~~~~~~~l~~~~~~ 64 (792) -+..++...|++...+.+..+.+|.|.+..+.++++++...+ T Consensus 34 l~ll~~f~~G~~lg~L~~~~~~l~~r~~~r~l~k~lk~l~~e 75 (80) T pfam06305 34 LLLLIAFALGFLLGWLISLPFYLRLRRRLRRLKKQLKKLEKE 75 (80) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999999 No 151 >TIGR02373 photo_yellow photoactive yellow protein; InterPro: IPR012130 Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by IPR012743 from INTERPRO is required for its biosynthesis. The modified Cys is in a PAS domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.; GO: 0009881 photoreceptor activity, 0007602 phototransduction, 0018298 protein-chromophore linkage. Probab=58.39 E-value=1.3 Score=22.17 Aligned_cols=55 Identities=25% Similarity=0.322 Sum_probs=44.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHH Q ss_conf 9999999999962034328996898488640588878289878943898388988 Q gi|255764476|r 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484 (792) Q Consensus 430 ~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~ 484 (792) +++.++-.+.+|.|+=|-..+|.+|+|.-+|.+=.+|.|-+|..++|+--+.++. T Consensus 14 n~la~m~~A~~d~LpfGAiqlD~~G~I~~YN~aEg~l~GR~P~~VIGrnFF~evA 68 (126) T TIGR02373 14 NTLARMGDAQLDSLPFGAIQLDGSGRILKYNAAEGELTGRDPERVIGRNFFKEVA 68 (126) T ss_pred HHHCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 6632689864225541048866988302110110001387977322743423327 No 152 >TIGR01083 nth endonuclease III; InterPro: IPR005759 The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular. Probab=51.44 E-value=6.4 Score=17.33 Aligned_cols=12 Identities=25% Similarity=0.363 Sum_probs=6.1 Q ss_pred HHHHHHHHHHHH Q ss_conf 689999888899 Q gi|255764476|r 546 TDSVRAERALTE 557 (792) Q Consensus 546 T~~k~~E~aL~e 557 (792) +|-.++|++|.+ T Consensus 152 ~dp~~vE~~L~~ 163 (192) T TIGR01083 152 KDPDKVEEELLK 163 (192) T ss_pred CCHHHHHHHHHH T ss_conf 898999999987 No 153 >pfam08446 PAS_2 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Probab=47.03 E-value=16 Score=14.69 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=19.7 Q ss_pred CCCCEEEEECHHHHHHHCCCHHHHCCCC Q ss_conf 6898488640588878289878943898 Q gi|255764476|r 451 GPDGRIKLSNPAFRSLWKTEENRLSPGT 478 (792) Q Consensus 451 ~~dgr~~~~N~a~~~l~g~~~~~l~~~~ 478 (792) .+|+++..+..-..+++|.+++.+.+++ T Consensus 23 ~~~~~I~qaS~N~~~~lG~~~~~llG~~ 50 (107) T pfam08446 23 EPDFRVLQASENAAEMLGLVAQQLLGTD 50 (107) T ss_pred CCCCEEEEECCCHHHHHCCCHHHHCCCC T ss_conf 7998799985588888585958985996 No 154 >pfam05127 DUF699 Putative ATPase (DUF699). This putative domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often associated with pfam00583. This domain is found in isolation in the uncharacterized protein HI1254 from Haemophilus influenzae. Probab=46.42 E-value=16 Score=14.63 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=31.0 Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCEE---CCCCCCCCCCCHHHHH Q ss_conf 99999978897897786541488376---2689888856637999 Q gi|255764476|r 719 FIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSI 760 (792) Q Consensus 719 v~i~V~D~G~GI~~e~~~riF~~F~~---~~~~~~~~GtGLGLsi 760 (792) .-+-|-|.--+||...+.++.+.|.+ .++..++.|||=|+++ T Consensus 76 ~DllvVDEAAaIP~p~L~~ll~~~~rvvfaTTihGYEGtGRgF~l 120 (160) T pfam05127 76 ADLLVVDEAAAIPLPLLKQLLEGFPRVVFATTVHGYEGTGRGFSL 120 (160) T ss_pred CCEEEEEHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHH T ss_conf 768997324218889999998508869999633651145812456 No 155 >TIGR01622 SF-CC1 splicing factor, CC1-like family; InterPro: IPR006509 These sequences represent a subfamily of RNA splicing factors including the Pad-1 protein (Neurospora crassa), CAPER (mouse) and CC1.3 (human). All are characterised by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 human paralogs, two) RNA recognition domains. These splicing factors are closely related to the U2AF splicing factor family (IPR006529 from INTERPRO). ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus. Probab=46.10 E-value=13 Score=15.32 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=4.1 Q ss_pred CCCEEEECCCCH Q ss_conf 887663123206 Q gi|255764476|r 535 NAQTMLTFVNVT 546 (792) Q Consensus 535 dg~~l~~~~DIT 546 (792) +|.+.+-|..|. T Consensus 484 ~G~vY~kf~~v~ 495 (531) T TIGR01622 484 AGKVYLKFDSVE 495 (531) T ss_pred CCCEEEECCCHH T ss_conf 852676327489 No 156 >PRK10506 hypothetical protein; Provisional Probab=43.94 E-value=17 Score=14.38 Aligned_cols=126 Identities=13% Similarity=0.016 Sum_probs=62.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHH Q ss_conf 57899999999999999999999999999999999999999999999999999860699789998179970014134123 Q gi|255764476|r 22 CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQ 101 (792) Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~r~r~~~~~~~~~l~~~~~~l~~~~~r~~all~~~~~~~~~w~~~~~~~~~~~~~~~ 101 (792) .|+++.-.+.++++...+...-...++.++....+++...+..++ .+|+-.+.+. +.|-..+....+.+.-.. T Consensus 10 iEllvvi~ii~il~~~a~p~~~~~~q~~~L~~~a~~l~~fL~~~r-----~~A~~~N~~~--~l~~~~~~~~Wcl~s~~~ 82 (155) T PRK10506 10 IETLVAMTLVVILSAWGLYGWQYWQQQQRLWQTAQQLRDFLLYLR-----EDANWHNRDH--ILWVIREGQGWCLVSSVA 82 (155) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCCE--EEEEEECCCCCEEEECCC T ss_conf 999999999999998877779999999999999999999999999-----9999858977--999994799518987898 Q ss_pred HCCCCCCHHHHHHHHHCCCHHHHHHH-----HHHHHHHHHCCCEEEEEEECCCCEE---EEEEEE Q ss_conf 21898320234443211894678989-----9999999853965899998689729---998304 Q gi|255764476|r 102 RIDIPQTDTDLLSFENWLKFHHYIKL-----SKATEKLRKEGQSFDLVAETQNDCA---IKIEGR 158 (792) Q Consensus 102 ~~g~~~~~~~~l~f~~wl~p~~a~~l-----~~ai~~l~~~g~~f~l~~~t~~g~~---i~~~Gr 158 (792) ....- ...... .+.+|..-..+ .-+.-.+|.++.++.+++..++|++ |-..|| T Consensus 83 ~~~~C-~~~~~~---~~~~~~~~v~l~~~~~~~~F~G~RnTa~~G~i~L~n~ag~~rvvIS~~GR 143 (155) T PRK10506 83 GATTC-TGSSPF---VFVPPWPDVEIADLTPSLAFFGLRNTAWAGHIRLKNSAGEWRLVISSWGR 143 (155) T ss_pred CCCCC-CCCCCC---CCCCCCCCEEEEECCCCEEEECCCCCCCCCEEEEECCCCCEEEEEECCCE T ss_conf 78876-656654---21688898177751675366455687538589998799878999975854 No 157 >PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed Probab=43.57 E-value=18 Score=14.34 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=38.8 Q ss_pred EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCE Q ss_conf 9987899999999998867753888688999999879989999997889789778654148837 Q gi|255764476|r 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 (792) Q Consensus 680 v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~ 743 (792) +.-.-..-.-....++.|.|..+|. ++++....+.+.+.+-+=|.+ =|++..++|=++|+ T Consensus 94 v~v~~~~~sd~~~~~lAn~ITLTPG--Tl~vdvd~d~~~l~VH~Ld~~--d~e~~~~~i~~~~E 153 (161) T PRK08965 94 VAVPLDLRSDLALTALANIITLTPG--TVVVEISRDRRTLLVHVLDLD--DPEALIREIKQRYE 153 (161) T ss_pred EEEECCCCCHHHHHHHHHHHHCCCC--CEEEEEECCCCEEEEEEEECC--CHHHHHHHHHHHHH T ss_conf 9996777987999999998743678--679998668998999972489--99999999889999 No 158 >TIGR01605 PYST-D Plasmodium yoelii subtelomeric family PYST-D; InterPro: IPR006492 The proteins in this set represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. These genes are generally very short (ca. 50 residues). There are no obvious homologs to these genes in any other organism. . Probab=42.49 E-value=13 Score=15.18 Aligned_cols=11 Identities=64% Similarity=0.921 Sum_probs=6.4 Q ss_pred CHHHHHHHHHH Q ss_conf 63799999999 Q gi|255764476|r 755 GLGLSIVESFI 765 (792) Q Consensus 755 GLGLsiv~~iV 765 (792) ||||||+=.+| T Consensus 13 GLGlSi~LhLI 23 (55) T TIGR01605 13 GLGLSITLHLI 23 (55) T ss_pred CCHHHHHHHHH T ss_conf 00488999999 No 159 >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Probab=40.98 E-value=19 Score=14.08 Aligned_cols=157 Identities=14% Similarity=0.079 Sum_probs=80.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHH--HHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 999999999999999985168005898159928985257--898736778775661015853389678999986125787 Q gi|255764476|r 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS--YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260 (792) Q Consensus 183 ~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A--~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~ 260 (792) .-.+-.+...+.|-..+-..|..+.+.|.+|.++-.+-. +-.-....+.- ......+...-+..-++ T Consensus 67 ~LL~iA~~~L~~L~~~v~~~~~~vLLtD~~GViL~~~G~~~~~~~~rk~gl~-----------~Ga~WSE~~~GTNgIGT 135 (606) T COG3284 67 ALLTIAQPELDRLFQAVAGSGCCVLLTDADGVILERRGDPRDDEDFRKAGLW-----------LGAVWSEPREGTNGIGT 135 (606) T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCHHHHHHHHHHCCC-----------CCCCCCCCCCCCCCHHH T ss_conf 8999868999999998368984899985853599852671044566663453-----------36603533456440213 Q ss_pred EEEEEEEEEECCEEEE------EEEEEEEC--CCCEEEEEEEHHHHH--------------------HHHHHH--HHHH- Q ss_conf 0345788865690789------99997632--895299983045899--------------------988788--9999- Q gi|255764476|r 261 NFCETVSTLEHGNNKS------YKIVRVLN--SFGEAGIAIDVSKEI--------------------TVNDQL--THTY- 309 (792) Q Consensus 261 ~~~~~~~~~~~G~rr~------~~v~~~~~--~~G~~Gia~DITErk--------------------~ae~aL--rr~~- 309 (792) ...+..++++.|+.++ +..+..|. +.|.+.=+.|||-.+ ..|.++ +.+. T Consensus 136 cLve~~aVtI~~~qHF~~~~~~lsCsAaPI~D~qG~L~gVLDISs~r~~~~~~s~~~~~~iV~~~ar~IE~~~~~~~~~~ 215 (606) T COG3284 136 CLVEGEAVTIHGDQHFIQAHHGLSCSAAPIFDEQGELVGVLDISSCRSDLSEASQPLTLAIVTDAARRIEAELFLAAFEG 215 (606) T ss_pred HHCCCCCEEEEHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 21027636985023576616573466513366878479999740587622233348999999999999999999875375 Q ss_pred ----------HHHHHCCCCEEEECCCCEEEEECHHHHHHHCCC-HHHHHCCC Q ss_conf ----------998430895999848980898536888550999-78960499 Q gi|255764476|r 310 ----------EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNP 350 (792) Q Consensus 310 ----------e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~-~~~l~~~p 350 (792) +.++..+.+..++|.++++.-.|++..++.+.+ ..-+.+.| T Consensus 216 ~~~lr~~~~p~~~d~~~~~~lavd~~grvl~at~aA~~~La~~~~~~l~g~p 267 (606) T COG3284 216 HWLLRIALAPDYLDSQSEALLAVDQDGRVLGATRAARQLLALTDRQRLIGQP 267 (606) T ss_pred CHHHHHHCCCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHCCCHHHHHHCCC T ss_conf 2677776185545766540001257665553228899762344666750577 No 160 >TIGR00107 deoD purine nucleoside phosphorylase; InterPro: IPR004402 Purine nucleoside phosphorylase 2.4.2.1 from EC also called inosine phosphorylase (pnp) cleave guanosine or inosine to respective bases and sugar-1-phosphate molecules. These enzymes are involved in the salvage of nucleotides and nucleosides.; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process. Probab=40.59 E-value=19 Score=14.04 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=6.9 Q ss_pred CCCEEEEEEE Q ss_conf 9818999973 Q gi|255764476|r 396 NGQTLHVIVT 405 (792) Q Consensus 396 DGr~l~v~~~ 405 (792) -||+++|..+ T Consensus 50 KGk~IsvmGh 59 (234) T TIGR00107 50 KGKKISVMGH 59 (234) T ss_pred CCCEEEEEEC T ss_conf 4635888640 No 161 >KOG0501 consensus Probab=40.49 E-value=19 Score=14.03 Aligned_cols=84 Identities=6% Similarity=0.060 Sum_probs=46.4 Q ss_pred CEEECCCHHHCCCCCCHH----HHHH--HHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEEC----- Q ss_conf 014134123218983202----3444--32118946789899999999853965899998689729998304557----- Q gi|255764476|r 93 PEIIGQLHQRIDIPQTDT----DLLS--FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG----- 161 (792) Q Consensus 93 ~~~~~~~~~~~g~~~~~~----~~l~--f~~wl~p~~a~~l~~ai~~l~~~g~~f~l~~~t~~g~~i~~~Gr~~g----- 161 (792) .++....+...|+.+.+. -..+ +|.....+....+++.++..+. ..|++-+..++-..+|.--..+. T Consensus 43 VY~NdgFcKlsGY~RAevMQKs~tc~FMyGEltdk~ti~k~~~t~eN~~~--~qfEillyKKN~TPvW~~vqiAPIrNe~ 120 (971) T KOG0501 43 VYCNDGFCKLSGYHRAEVMQKSCTCSFMYGELTDKGTIEKVRQTLENYET--NQFEILLYKKNRTPVWLLVQIAPIRNEK 120 (971) T ss_pred EEECCCCHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCEEEEEEEECCCCCC T ss_conf 88347621124745998862564233320133451169999999975431--2123676615898559999840235777 Q ss_pred CEE---EEEEEECHHHHHHH Q ss_conf 548---99874010689999 Q gi|255764476|r 162 SCA---FLRILSLDGIYSEL 178 (792) Q Consensus 162 ~~a---~~r~~d~s~~~~~~ 178 (792) ..+ ++-|.|++...+-+ T Consensus 121 d~VVLfLctFkDIT~~KQPi 140 (971) T KOG0501 121 DKVVLFLCTFKDITALKQPI 140 (971) T ss_pred CEEEEEEEECCCCHHHCCCC T ss_conf 51899995114644323877 No 162 >PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated Probab=40.11 E-value=20 Score=13.99 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=51.0 Q ss_pred CCEEEEEECCCCCEEEECHHHHHHHHHHHHHHH---------HHCCCCCC---------EEEEEEEEECCEEEEEEEECC Q ss_conf 968999956986089987899999999998867---------75388868---------899999987998999999788 Q gi|255764476|r 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNA---------MDFSSKGS---------TVILKAARDNGDFIFSVKNNG 727 (792) Q Consensus 666 ~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NA---------ik~~~~gg---------~I~i~~~~~~~~v~i~V~D~G 727 (792) |..+-+++-.-.+....|...|++++.+.+.-+ -+|.|.|- .|.|.++.+.+.+.+.|==.| T Consensus 7 G~Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~~~tvl~~~~h~F~p~GvT~v~lLaESHiSiHTwPE~g~aaiDiFTCG 86 (123) T PRK01706 7 GKHIIVDLWGVDFSLLDDMYFLEHHLVHAADLSGAHVLNVSTKEFDPHGVTVLVLLSESHLSIHTYPEKNFAAIDCYTCG 86 (123) T ss_pred CEEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECCCCCEEEEEEECCC T ss_conf 42999999887834676999999999999998699899777387799988999997502689997565887999998579 Q ss_pred CCCCHHHH-HHHCCCC Q ss_conf 97897786-5414883 Q gi|255764476|r 728 SSIPEDMC-KSVFNRF 742 (792) Q Consensus 728 ~GI~~e~~-~riF~~F 742 (792) ..+.|+.. +.+-+.| T Consensus 87 ~~~~p~~a~~~L~~~l 102 (123) T PRK01706 87 TTVEPQIAIDYIVSIL 102 (123) T ss_pred CCCCHHHHHHHHHHHH T ss_conf 9899999999999974 No 163 >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. Probab=38.17 E-value=21 Score=13.79 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=17.5 Q ss_pred EEEEEECC--CC-CEEEEECCHHHHHHHHHHHHHHHHH Q ss_conf 99973569--98-6899945957999999999999999 Q gi|255764476|r 401 HVIVTSNP--RG-GTIWMFENLTVQVDLETKYNTLVKV 435 (792) Q Consensus 401 ~v~~~~~p--~G-g~~~~~~DITE~~~le~~~~~l~~~ 435 (792) +|+.-|.. +| |++. ||+....++..+....+. T Consensus 333 ~VVVKP~dGnqGrGVtv---nl~t~eev~~A~~~A~~~ 367 (547) T TIGR03103 333 AVVVKPVRGEQGKGISV---DVRTPDDLEAAIAKARQF 367 (547) T ss_pred CEEECCCCCCCCCCEEE---CCCCHHHHHHHHHHHHHH T ss_conf 99977687888861587---259999999999999975 No 164 >TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process. Probab=35.30 E-value=23 Score=13.49 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=48.9 Q ss_pred HHHHHHHHHHCCCCCCEE-EEE--------EEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCC----CCCHH Q ss_conf 999988677538886889-999--------99879989999997889789778654148837626898888----56637 Q gi|255764476|r 691 FSKILSNAMDFSSKGSTV-ILK--------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLG 757 (792) Q Consensus 691 l~NLl~NAik~~~~gg~I-~i~--------~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~----GtGLG 757 (792) |.+=|.|=++-| |.+| ||+ .++..+-|++| -|||=|.|.. -=.|-+..-.++ |.=|| T Consensus 536 FVHTLAnY~RqT--GAsVTTlRh~~ae~~fd~~rPDLVVLS---PGPGrP~dFd-----v~~Ti~aa~ar~lP~FGVCLG 605 (726) T TIGR01815 536 FVHTLANYLRQT--GASVTTLRHSFAEELFDEERPDLVVLS---PGPGRPKDFD-----VKETIKAALARDLPVFGVCLG 605 (726) T ss_pred HHHHHHHHHHHC--CCEEEECCCHHHHHHHHCCCCCEEEEC---CCCCCCCCCC-----HHHHHHHHHHCCCCEEEEHHH T ss_conf 377778887634--875530430478999732799889868---7312387544-----788999999728985774134 Q ss_pred HHHHHHHHHHCCCEEEEEEEC--CCCEEEEEEEE Q ss_conf 999999999619869999788--99439999973 Q gi|255764476|r 758 LSIVESFINLHGGHVSISSSD--EGVTTINCRIP 789 (792) Q Consensus 758 Lsiv~~iVe~hgG~I~v~S~~--G~Gttf~v~lP 789 (792) | ++|||..||.+.+=..| ||-|++.|.=| T Consensus 606 L---Qg~vEafGG~L~vL~~P~HGK~srirVl~p 636 (726) T TIGR01815 606 L---QGLVEAFGGELDVLAIPVHGKASRIRVLEP 636 (726) T ss_pred H---HHHHHHHCCCCCCCCCCCCCCCCEEEEECC T ss_conf 6---899987467213578887886336888368 No 165 >TIGR02791 VirB5 P-type DNA transfer protein VirB5; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation . VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE .. Probab=33.85 E-value=24 Score=13.45 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.7 Q ss_pred ECHHHHHHHCCC Q ss_conf 405888782898 Q gi|255764476|r 459 SNPAFRSLWKTE 470 (792) Q Consensus 459 ~N~a~~~l~g~~ 470 (792) .|.-|..+.|+. T Consensus 69 ~k~~y~~~tG~~ 80 (233) T TIGR02791 69 AKQQYGSLTGLR 80 (233) T ss_pred HHHHHHHHCCCC T ss_conf 999999843663 No 166 >pfam08066 PMC2NT PMC2NT (NUC016) domain. This domain is found at the N-terminus of 3'-5' exonucleases with HRDC domains, and also in putative exosome components. Probab=33.24 E-value=25 Score=13.27 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHH Q ss_conf 9999999999999999999999988514983000233069999999999999 Q gi|255764476|r 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 (792) Q Consensus 608 e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~ 659 (792) ++-..|-+.+.||+.++|++|............. ...++.+--+.+++.+- T Consensus 25 ~~~~~ld~~s~rLl~l~n~ll~~~~~~~~~~~~~-~~~~~e~~w~~vvdv~D 75 (91) T pfam08066 25 EFSQSLDEQSQRLLSLINDLLQSAGSKSDIPDRS-DEDDVEDQWEGVVDVND 75 (91) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHH T ss_conf 8999999999999999999998447667887875-42318899999999999 No 167 >pfam00862 Sucrose_synth Sucrose synthase. Sucrose synthases catalyse the synthesis of sucrose from UDP-glucose and fructose. This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family pfam00534. Probab=32.80 E-value=26 Score=13.22 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=66.7 Q ss_pred EHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH Q ss_conf 04589998878899999984308959998489808985368885509997896049987999998975477766465788 Q gi|255764476|r 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373 (792) Q Consensus 294 DITErk~ae~aLrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~ 373 (792) -|....+.+.+|+...+.|..++. +.-+.-+...++. +|+.+.|=+ +-..+++.++--..+-+.||- T Consensus 193 ri~~~~~L~~~l~~A~~~l~~~p~-------dtpy~~f~~~lq~-lGfE~GWG~---tA~Rv~Et~~lL~dlL~aPdp-- 259 (550) T pfam00862 193 RIQNISALQSALRKAEDYLSTLPP-------DTPYSEFEHKFQE-IGFERGWGD---TAERVLEMMHLLLDLLEAPDP-- 259 (550) T ss_pred CCCCHHHHHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHH-HCCCCCCCC---CHHHHHHHHHHHHHHHHCCCH-- T ss_conf 757899999999999999964999-------9986999999998-378877566---289999999999999868890-- Q ss_pred HHHHHHHHHHCCCCCCE--EEECCCCCE--EEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 99999987624676502--688789818--99997356998689994595799999999999999999999620343289 Q gi|255764476|r 374 WKENIFSVYKSSETHKD--TWHLPNGQT--LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449 (792) Q Consensus 374 w~~~~~~~~~~~~~~~~--~w~l~DGr~--l~v~~~~~p~Gg~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav 449 (792) ..++.|-+.-|.-. ....|-|-- --|...|.--|.++++.+-+ +.+|.....-++.| -+|--+.-+.+ T Consensus 260 ---~~LE~Fl~RiPmvF~vvi~SpHGyFgQ~~VLG~PDTGGQVVYILDQv---RaLE~em~~rik~q--GLdi~P~IlIv 331 (550) T pfam00862 260 ---STLETFLGRIPMVFNVVILSPHGYFAQANVLGYPDTGGQVVYILDQV---RALESEMLVRIKQQ--GLDITPRILIV 331 (550) T ss_pred ---HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHH---HHHHHHHHHHHHHC--CCCCCCEEEEE T ss_conf ---68999973265016899965764002357577899897599971777---88999999999975--88877608999 Q ss_pred E--CCCCEEEEECHHHHHHHCCCH Q ss_conf 9--689848864058887828987 Q gi|255764476|r 450 F--GPDGRIKLSNPAFRSLWKTEE 471 (792) Q Consensus 450 ~--~~dgr~~~~N~a~~~l~g~~~ 471 (792) . -+|-.=+.||...+++.|-.. T Consensus 332 TRLIP~a~GT~CnqrlEkv~gT~~ 355 (550) T pfam00862 332 TRLLPDAVGTTCNQRLEKVFGTEH 355 (550) T ss_pred EEECCCCCCCCCCCEEEECCCCCC T ss_conf 740468889835853001058765 No 168 >pfam02675 AdoMet_dc S-adenosylmethionine decarboxylase. This family contains several S-adenosylmethionine decarboxylase proteins from bacterial and archaebacterial species. S-adenosylmethionine decarboxylase (AdoMetDC), a key enzyme in the biosynthesis of spermidine and spermine, is first synthesized as a proenzyme, which is cleaved post translationally to form alpha and beta subunits. The alpha subunit contains a covalently bound pyruvoyl group derived from serine that is essential for activity. Probab=32.62 E-value=26 Score=13.20 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=44.7 Q ss_pred CEEEECHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHC Q ss_conf 089987899999999998867---------7538886---------8899999987998999999788978977865414 Q gi|255764476|r 678 GSFVADRQRLLQIFSKILSNA---------MDFSSKG---------STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 (792) Q Consensus 678 ~~v~~D~~rL~QVl~NLl~NA---------ik~~~~g---------g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF 739 (792) +.+..|...|++++.+++.-+ -+|.|.| +.|.+.++.+.+.+.+.|-=.|.++.|+..-+.. T Consensus 11 ~~~L~d~~~i~~~l~~a~~~~~~tvl~~~~~~f~p~Gvt~v~ll~ESHisiHTwPE~g~aaiDiftCg~~~~p~~a~~~l 90 (107) T pfam02675 11 ADLLNDAERLERILREAAKAAGATLLGIAFHKFEPQGVSGVALLAESHISIHTWPEYGYAAVDVFTCGEHADPWKALEYL 90 (107) T ss_pred HHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHH T ss_conf 46787999999999999998799899999897599988999992266389998268893899997178989999999999 Q ss_pred C Q ss_conf 8 Q gi|255764476|r 740 N 740 (792) Q Consensus 740 ~ 740 (792) . T Consensus 91 ~ 91 (107) T pfam02675 91 K 91 (107) T ss_pred H T ss_conf 9 No 169 >TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process. Probab=32.59 E-value=26 Score=13.20 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=30.1 Q ss_pred EEEEECCCC-------EE-E-EE--EEHHHHHHHHHHHHHHHHHHHHC Q ss_conf 997632895-------29-9-98--30458999887889999998430 Q gi|255764476|r 279 IVRVLNSFG-------EA-G-IA--IDVSKEITVNDQLTHTYEILHNL 315 (792) Q Consensus 279 v~~~~~~~G-------~~-G-ia--~DITErk~ae~aLrr~~e~Ld~l 315 (792) -|++|+||| .. . -. +.||.=+.+.+-|+-|++.+++. T Consensus 169 GTEVPvPGGetGGDaDA~e~l~~hel~VT~PeaA~~Tl~~HR~AF~~~ 216 (430) T TIGR02810 169 GTEVPVPGGETGGDADALEALQEHELAVTTPEAARETLEAHRKAFAAR 216 (430) T ss_pred EEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 102248878887650467665304778888888999999999999871 No 170 >TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer.. Probab=32.20 E-value=26 Score=13.16 Aligned_cols=38 Identities=11% Similarity=0.302 Sum_probs=31.1 Q ss_pred EECCEEEEEEEECCCCCCHHHHHHHCCCCEE-CCCCCCC Q ss_conf 8799899999978897897786541488376-2689888 Q gi|255764476|r 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR 751 (792) Q Consensus 714 ~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~-~~~~~~~ 751 (792) ..|..+.++.-|||-|=+.-.=|=|+-|||| ++.-|+| T Consensus 645 e~Gh~vtLELlDNGAGAD~~KNDGiYsRYFT~Y~~NgRY 683 (874) T TIGR00868 645 ENGHTVTLELLDNGAGADTVKNDGIYSRYFTAYDGNGRY 683 (874) T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCE T ss_conf 799789988641776656600583122012021678835 No 171 >TIGR02749 prenyl_cyano solanesyl diphosphate synthase; InterPro: IPR014120 This entry contains solanesyl diphosphate synthases from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterised by heterologous expression as a solanesyl diphosphate synthase.. Probab=31.69 E-value=24 Score=13.40 Aligned_cols=28 Identities=32% Similarity=0.346 Sum_probs=12.9 Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHH Q ss_conf 999988889--9999999999999999999 Q gi|255764476|r 548 SVRAERALT--EKNEALRKADEIKNSFVQH 575 (792) Q Consensus 548 ~k~~E~aL~--e~~eale~a~~lk~~F~~~ 575 (792) .+-.|+||. +...+++++-.+..+++.. T Consensus 267 ~~DLe~AL~lv~~~~aI~k~rELA~~~A~~ 296 (325) T TIGR02749 267 KGDLEQALELVRKSGAIKKARELAKEQAQL 296 (325) T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 145799999998237215789999999999 No 172 >pfam01899 MNHE Na+/H+ ion antiporter subunit. Subunit of a Na+/H+ Prokaryotic antiporter complex. Probab=30.37 E-value=28 Score=12.96 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=34.8 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEE Q ss_conf 9999988677538886889999998799899999978897897786541488376 Q gi|255764476|r 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 (792) Q Consensus 690 Vl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~ 744 (792) .-.-++.|.|..+|. ++++....+.+.+.+.+-|-- .-+++..+.|-++|++ T Consensus 48 ~~~~llansITLTPG--Tltvdv~~d~~~L~VH~ld~~-~~~~~~~~~i~~~~E~ 99 (106) T pfam01899 48 TGLTILANSITLTPG--TLTIDLDPEERKLYVHWIDVE-TNSPRSSEDIVGPFEK 99 (106) T ss_pred HHHHHHHHHHHCCCC--EEEEEEECCCCEEEEEEEECC-CCCHHHHHHHHHHHHH T ss_conf 899999987716997--799998189998999996679-9517899885188899 No 173 >PRK11564 stationary phase inducible protein CsiE; Provisional Probab=29.10 E-value=29 Score=12.81 Aligned_cols=17 Identities=6% Similarity=0.268 Sum_probs=9.1 Q ss_pred EEEEEECCCCCCHHHHH Q ss_conf 99999788978977865 Q gi|255764476|r 720 IFSVKNNGSSIPEDMCK 736 (792) Q Consensus 720 ~i~V~D~G~GI~~e~~~ 736 (792) ++-|+++|+|+..-... T Consensus 341 ~livc~~g~~~~~~l~~ 357 (426) T PRK11564 341 ILLLTGDNPELEAQIEQ 357 (426) T ss_pred EEEEECCCHHHHHHHHH T ss_conf 89995897479999999 No 174 >pfam11853 DUF3373 Protein of unknown function (DUF3373). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length. Probab=27.85 E-value=31 Score=12.67 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999998 Q gi|255764476|r 37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75 (792) Q Consensus 37 ~~~~~~~~~r~r~~~~~~~~~l~~~~~~l~~~~~r~~al 75 (792) +..+-+-+.++-..+.++.++|++++.++..+.++.+.- T Consensus 22 a~~~d~~~~qkI~~L~~ql~eLk~~~~~~~~~v~~~e~~ 60 (485) T pfam11853 22 AAAADIDLLQKIEALKKELAELKAQLKDLNKRVDKTEKK 60 (485) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 134434499999999999999999999877665556665 No 175 >KOG3561 consensus Probab=27.68 E-value=31 Score=12.65 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=50.1 Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 94678989999999985396589999868972999830455754899874010689999999999999999999999998 Q gi|255764476|r 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199 (792) Q Consensus 120 ~p~~a~~l~~ai~~l~~~g~~f~l~~~t~~g~~i~~~Gr~~g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr~ll 199 (792) .|+-..-|+.++..+|..-+. .. .-..+.-+-++ .+++ . .+.=..|| T Consensus 55 K~DK~tVLr~aV~~lr~~k~~-~~-----~~~~~~~d~Kp---------SflS------------~------~eL~~LmL 101 (803) T KOG3561 55 KPDKLTVLRMAVDHLRLIKEQ-ES-----ENSSIDQDYKP---------SFLS------------N------DELTHLIL 101 (803) T ss_pred CCHHHHHHHHHHHHHHHHHHH-HC-----CCCCCCCCCCC---------CCCC------------H------HHHHHHHH T ss_conf 843789999999999987534-02-----45433556454---------4366------------1------77899999 Q ss_pred HHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCC Q ss_conf 51680058981599289852578987367787756610158 Q gi|255764476|r 200 DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240 (792) Q Consensus 200 da~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~ 240 (792) +++.-.+|+..+||+|+||...-. -..++..+|..+.. T Consensus 102 eAlDGF~fvV~cdG~IvyVSeSVT---~~L~y~QsDL~~qS 139 (803) T KOG3561 102 EALDGFLFVVNCDGRIVYVSESVT---SVLGYLQSDLMGQS 139 (803) T ss_pred HHHCCEEEEEECCCEEEEEECCHH---HHHCCCHHHHHCCH T ss_conf 974674899965745999955447---76586878873341 No 176 >KOG1232 consensus Probab=27.59 E-value=31 Score=12.64 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=68.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 99999999999996666322589999999997357778899899999999999999999999999999885149830002 Q gi|255764476|r 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 (792) Q Consensus 563 e~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~ 642 (792) |-.+...-+.+-.-.-+++.||+.---|--|.+..- . |+. ++ -+.|...+.|.|+---|..|.+.-+. T Consensus 301 ElmD~~s~~~~~~~l~~l~~pl~~~~pFyiLiETsG--S-n~d-hD--------~eKl~afl~d~lek~lIsDGv~a~d~ 368 (511) T KOG1232 301 ELMDNASMELVLEYLKDLHFPLEDEHPFYILIETSG--S-NKD-HD--------EEKLTAFLEDCLEKGLISDGVLAQDE 368 (511) T ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC--C-CCC-CC--------HHHHHHHHHHHHHHCCCCCCEECCCH T ss_conf 764014789999874337897568986289998358--8-865-40--------99999999876651532055121788 Q ss_pred EEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHC--CCC---CCEEEEEEEEECC Q ss_conf 33069999999999999999848968999956986089987899999999998867753--888---6889999998799 Q gi|255764476|r 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSK---GSTVILKAARDNG 717 (792) Q Consensus 643 ~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~--~~~---gg~I~i~~~~~~~ 717 (792) ..+ .-+....+.+-..+.+++--.+.|+ ++|. ..++||. |+.+- .+. |..+...--.+++ T Consensus 369 ~~~---~~lW~~Re~ip~a~~~~g~vyKyDv--SLpL---------~d~Y~lv-n~~~eRl~~~~l~~d~~gyGHlGDgN 433 (511) T KOG1232 369 AEA---QKLWKIRESIPEALQKAGGVYKYDV--SLPL---------EDLYNLV-NVMKERLGEAALVGDIVGYGHLGDGN 433 (511) T ss_pred HHH---HHHHHHHHCCHHHHHHCCCEEEEEC--CCCH---------HHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 899---9999997412788975697788623--6628---------9999999-99998622144430201445445784 Q ss_pred -EEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf -89999997889789778654148837626898888566379999999996198699997889 Q gi|255764476|r 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 (792) Q Consensus 718 -~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G 779 (792) ++-|+|+.- -+.+++..+|| |+..|..|+|.|..|-..| T Consensus 434 lHLNia~~ef-----n~~iek~lePf------------------vYE~vs~~~GSISAEHGiG 473 (511) T KOG1232 434 LHLNIAVREF-----NKEIEKLLEPF------------------VYEWVSKHKGSISAEHGIG 473 (511) T ss_pred EEEEEEHHHH-----HHHHHHHHHHH------------------HHHHHHHCCCCEECCCCCC T ss_conf 2576339987-----68898753159------------------9998872487122000554 No 177 >TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535). Probab=27.48 E-value=31 Score=12.62 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=45.2 Q ss_pred EEEEEECCCCCEEEECHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCEEEEEEEECCCC Q ss_conf 8999956986089987899999999998867---------7538886---------889999998799899999978897 Q gi|255764476|r 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNA---------MDFSSKG---------STVILKAARDNGDFIFSVKNNGSS 729 (792) Q Consensus 668 ~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NA---------ik~~~~g---------g~I~i~~~~~~~~v~i~V~D~G~G 729 (792) .+-+++-.-.+.+..|...|++++.+.+..+ -+|.|.| +.|.+.++.+.+.+.+.|-=.|.. T Consensus 6 Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~~~~il~~~~~~f~p~GvT~v~ll~ESHisiHTwPE~g~aaiDiftCg~~ 85 (112) T TIGR03330 6 HLIVDLYGCDPEKLDDVEFIEEILLEAAKVAGATLVASHFHKFSPGGVSGVVLLAESHISIHTWPEYGYAAVDVFTCGDH 85 (112) T ss_pred EEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEECCCC T ss_conf 99999977795787799999999999999869979988869749997999999324369999867888499999863899 Q ss_pred CCHHHHHHHC Q ss_conf 8977865414 Q gi|255764476|r 730 IPEDMCKSVF 739 (792) Q Consensus 730 I~~e~~~riF 739 (792) ..|+..-+.. T Consensus 86 ~~p~~a~~~l 95 (112) T TIGR03330 86 SDPEKAFEYL 95 (112) T ss_pred CCHHHHHHHH T ss_conf 9999999999 No 178 >TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process. Probab=26.97 E-value=32 Score=12.56 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHHHHCC-CCCCEEEEECHHHHHHHHHHHH Q ss_conf 9999999999885149-8300023306999999999999 Q gi|255764476|r 621 LNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSI 658 (792) Q Consensus 621 ~~li~diLdls~i~aG-~~~l~~~~vdl~~~i~~~~~~~ 658 (792) .+|+..||+- -.-| .-.|.+-..|+...+..+++.+ T Consensus 270 vEmCqklla~--tsGG~i~~LH~YTlNlEKA~~~Il~rL 306 (312) T TIGR00677 270 VEMCQKLLAS--TSGGLIKGLHFYTLNLEKAALMILERL 306 (312) T ss_pred HHHHHHHHHH--CCCCCCCCCHHHHCCHHHHHHHHHHHC T ss_conf 9999999850--378731342023301778999999847 No 179 >COG4362 Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism] Probab=26.42 E-value=33 Score=12.50 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=34.3 Q ss_pred EHHHHHHHHHHHHHHHHHH-H--HCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCC Q ss_conf 0458999887889999998-4--308959998489808985368885509997896049987999998975477766 Q gi|255764476|r 294 DVSKEITVNDQLTHTYEIL-H--NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367 (792) Q Consensus 294 DITErk~ae~aLrr~~e~L-d--~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe 367 (792) |++..+.+.++|-.+...- + .+---|.||.|..+...||+..-+.-||+.+ .|.|....+-+..+.-|-.++ T Consensus 78 dl~t~e~~~eal~~Hi~~Atn~GkirP~Isvf~P~~~~~iwN~QLIRYAgye~d--igDP~~~~~t~~~~~lGW~g~ 152 (355) T COG4362 78 DLNTEEEVYEALLQHITDATNGGKIRPTISVFGPGVRLKIWNPQLIRYAGYEND--IGDPISADFTDACERLGWQGE 152 (355) T ss_pred HCCCHHHHHHHHHHHHHHHCCCCEECCEEEEECCCCCCCCCCHHHHHHHCCCCC--CCCCCCHHHHHHHHHHCCCCC T ss_conf 216499999999998876426973140488748998755467888765044356--898511489999998288888 No 180 >pfam07045 DUF1330 Protein of unknown function (DUF1330). This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown. Probab=25.11 E-value=34 Score=12.34 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=16.5 Q ss_pred HHHHHHHHHCCCEEEEE-----EECCC---CEEEEEEEECC Q ss_conf 99999999619869999-----78899---43999997347 Q gi|255764476|r 759 SIVESFINLHGGHVSIS-----SSDEG---VTTINCRIPSK 791 (792) Q Consensus 759 siv~~iVe~hgG~I~v~-----S~~G~---Gttf~v~lP~~ 791 (792) ..+..+|+.|||++-+. .-.|. ..++.+.||+. T Consensus 9 ~~~~~~i~~~gG~~l~rg~~~~~lEG~~~~~~~ViieFps~ 49 (65) T pfam07045 9 ALAGPALAKHGGRFLARGGAPEVLEGDWDPDRIVVIEFPSM 49 (65) T ss_pred HHHHHHHHHCCCEEEEECCCCEEEECCCCCCEEEEEECCCH T ss_conf 97699999849999998798468625899876999981999 No 181 >PRK06841 short chain dehydrogenase; Provisional Probab=23.73 E-value=36 Score=12.17 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=6.9 Q ss_pred EEHHHHHHHHHHHHHHHH Q ss_conf 304589998878899999 Q gi|255764476|r 293 IDVSKEITVNDQLTHTYE 310 (792) Q Consensus 293 ~DITErk~ae~aLrr~~e 310 (792) .|||+....++......+ T Consensus 68 ~Dvt~~~~v~~~v~~~~~ 85 (255) T PRK06841 68 CDVSDSQSVEAAVAAAIS 85 (255) T ss_pred EECCCHHHHHHHHHHHHH T ss_conf 846999999999999999 No 182 >PRK06124 gluconate 5-dehydrogenase; Provisional Probab=23.71 E-value=36 Score=12.16 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=8.3 Q ss_pred ECHHHHHHHHHHHHHHHHHCC Q ss_conf 878999999999988677538 Q gi|255764476|r 682 ADRQRLLQIFSKILSNAMDFS 702 (792) Q Consensus 682 ~D~~rL~QVl~NLl~NAik~~ 702 (792) |.|..+..+..=|+|++-.|. T Consensus 224 g~pedia~~v~fL~Sd~ssyi 244 (259) T PRK06124 224 GRPEEIAGAAVFLASPAASYV 244 (259) T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 599999999999958443586 No 183 >TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785 Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt. Probab=23.26 E-value=25 Score=13.29 Aligned_cols=15 Identities=7% Similarity=0.147 Sum_probs=5.5 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 899999999998867 Q gi|255764476|r 684 RQRLLQIFSKILSNA 698 (792) Q Consensus 684 ~~rL~QVl~NLl~NA 698 (792) |..=+||.....+|+ T Consensus 42 P~YAk~V~~av~~g~ 56 (143) T TIGR01120 42 PDYAKEVVRAVLEGK 56 (143) T ss_pred CHHHHHHHHHHHCCC T ss_conf 068999999974487 No 184 >COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Probab=23.15 E-value=37 Score=12.09 Aligned_cols=105 Identities=12% Similarity=0.145 Sum_probs=54.6 Q ss_pred CCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCC-EEEEEEEEEECCEEEEEEEEEE Q ss_conf 005898159928985257898736778775661015853389678999986125787-0345788865690789999976 Q gi|255764476|r 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK-NFCETVSTLEHGNNKSYKIVRV 282 (792) Q Consensus 204 ~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~rr~~~v~~~ 282 (792) ..--++++||++.|.+.+|--..+...+ +-.+++...+..-....+. ...+.++ +.|-|++..+ T Consensus 64 ~d~~I~~adG~v~w~l~~Y~Fll~~~~~----------~tVnPSLwRQaqLn~~~GLfkVtd~iY-----QVRG~DisNI 128 (655) T COG2015 64 SDEGIKRADGKVVWRLDAYDFLLDGAAP----------DTVNPSLWRQAQLNAKHGLFKVTDGIY-----QVRGFDISNI 128 (655) T ss_pred CCHHEECCCCCEEEECCCCCCCCCCCCC----------CCCCHHHHHHHHHHHHCCEEEECCCEE-----EEECCCCCCE T ss_conf 6121267998479874765535689983----------555988999988764257056236635-----7602013322 Q ss_pred ECCCCEEE-EEEE-HHHHHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 32895299-9830-45899988788999999843089599984 Q gi|255764476|r 283 LNSFGEAG-IAID-VSKEITVNDQLTHTYEILHNLTVAIAIFD 323 (792) Q Consensus 283 ~~~~G~~G-ia~D-ITErk~ae~aLrr~~e~Ld~l~~~v~ifd 323 (792) ..-.|..| |.+| .|--+.++++|.-..+-+-+.|.--+|+. T Consensus 129 TfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYt 171 (655) T COG2015 129 TFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYT 171 (655) T ss_pred EEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 7980785269981567828899999999976588974899961 No 185 >KOG1845 consensus Probab=23.01 E-value=34 Score=12.36 Aligned_cols=11 Identities=9% Similarity=-0.136 Sum_probs=4.1 Q ss_pred HHHHHCCCCEE Q ss_conf 99851680058 Q gi|255764476|r 197 VLFDSLDFLVW 207 (792) Q Consensus 197 ~llda~P~~vw 207 (792) ..+|.+|...| T Consensus 157 nalDEi~~~~t 167 (775) T KOG1845 157 NALDEITNGAT 167 (775) T ss_pred CCCCCCCCCCC T ss_conf 55412346531 No 186 >TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception. Probab=22.85 E-value=38 Score=12.05 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=3.5 Q ss_pred HHHHHHHHHH Q ss_conf 9999966663 Q gi|255764476|r 571 SFVQHVSYEL 580 (792) Q Consensus 571 ~F~~~vSHEL 580 (792) .|++..+.++ T Consensus 321 hFL~~a~~~l 330 (471) T TIGR01818 321 HFLALAAKEL 330 (471) T ss_pred HHHHHHHHHC T ss_conf 9999988742 No 187 >KOG4013 consensus Probab=21.54 E-value=40 Score=11.88 Aligned_cols=17 Identities=18% Similarity=0.515 Sum_probs=7.5 Q ss_pred EEEEEECCCCCEEEEECC Q ss_conf 999735699868999459 Q gi|255764476|r 401 HVIVTSNPRGGTIWMFEN 418 (792) Q Consensus 401 ~v~~~~~p~Gg~~~~~~D 418 (792) .++.--.|.+| -++|.| T Consensus 61 P~ycMiRpR~G-DFvYsd 77 (255) T KOG4013 61 PLYCMIRPRAG-DFVYSD 77 (255) T ss_pred CEEEEEECCCC-CCCCCH T ss_conf 16999713778-741261 No 188 >TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase; InterPro: IPR012772 This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analogous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.; GO: 0008415 acyltransferase activity, 0019491 ectoine biosynthetic process. Probab=21.40 E-value=34 Score=12.34 Aligned_cols=13 Identities=46% Similarity=0.560 Sum_probs=6.1 Q ss_pred EEEECHHHHHHHC Q ss_conf 8864058887828 Q gi|255764476|r 456 IKLSNPAFRSLWK 468 (792) Q Consensus 456 ~~~~N~a~~~l~g 468 (792) |.=-|.|-.++|. T Consensus 111 iTPdN~AS~aLF~ 123 (162) T TIGR02406 111 ITPDNEASRALFK 123 (162) T ss_pred CCCCHHHHHHHHH T ss_conf 0766668999999 No 189 >cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=20.96 E-value=41 Score=11.80 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=12.5 Q ss_pred CEEEECCCCEEEEECHHHHHHHCCCH Q ss_conf 59998489808985368885509997 Q gi|255764476|r 318 AIAIFDQNRYLQFHNRSFVELWEIDL 343 (792) Q Consensus 318 ~v~ifd~~~rl~~~N~a~~~l~gl~~ 343 (792) +++|+|.++++..+.+.+...|.+.. T Consensus 4 ~~vv~~~~g~vLL~rr~~~~~W~lPG 29 (120) T cd04680 4 RAVVTDADGRVLLVRHTYGPGWYLPG 29 (120) T ss_pred EEEEECCCCEEEEEEECCCCEEECCC T ss_conf 99999299909999867999199995 No 190 >TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820 This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity. Probab=20.71 E-value=42 Score=11.76 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=9.8 Q ss_pred HHCCCCEEEEC--CCCCEEEECHHHHHH Q ss_conf 51680058981--599289852578987 Q gi|255764476|r 200 DSLDFLVWHRD--QAGDILWANISYKKN 225 (792) Q Consensus 200 da~P~~vw~~D--~dGri~~vN~A~~~~ 225 (792) +..|-.+-+.. ||-.=+.||+..++. T Consensus 312 ~~~PkIlIvTRLiPdA~GT~CnqRLEKv 339 (790) T TIGR02470 312 EITPKILIVTRLIPDAEGTTCNQRLEKV 339 (790) T ss_pred CCCCEEEEEECCCCCCCCCCCCCEEECC T ss_conf 5655289985017689886057245201 No 191 >pfam03281 Mab-21 Mab-21 protein. Probab=20.63 E-value=42 Score=11.75 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=6.3 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 95799999999999999 Q gi|255764476|r 418 NLTVQVDLETKYNTLVK 434 (792) Q Consensus 418 DITE~~~le~~~~~l~~ 434 (792) ||.-+| +-.+++.++. T Consensus 122 ~Lsa~K-ils~Fr~LV~ 137 (360) T pfam03281 122 YLSARK-IRSRFQTLVA 137 (360) T ss_pred CEEHHH-HHHHHHHHHH T ss_conf 030899-9999999999 No 192 >PRK07831 short chain dehydrogenase; Provisional Probab=20.50 E-value=42 Score=11.74 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=16.0 Q ss_pred EECHHHHHHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 9878999999999988677538886889999 Q gi|255764476|r 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 (792) Q Consensus 681 ~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~ 711 (792) .++|..+..+..=|+|++-.|. .|..|.|. T Consensus 228 ~g~pediA~~v~fLaSd~s~~i-TGq~i~V~ 257 (261) T PRK07831 228 AAEPWEVAAVIAFLASDYSSYL-TGEVVSVS 257 (261) T ss_pred CCCHHHHHHHHHHHHCHHHCCC-CCEEEEEC T ss_conf 7599999999999958154697-57388988 No 193 >TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process. Probab=20.39 E-value=42 Score=11.72 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=31.9 Q ss_pred HHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 21189467898999999998539658999986897299983045575489987401068999999999999999999999 Q gi|255764476|r 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195 (792) Q Consensus 116 ~~wl~p~~a~~l~~ai~~l~~~g~~f~l~~~t~~g~~i~~~Gr~~g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~l 195 (792) ++-|.||+=..+.+++..-.+.|- || ++=++|. |. -.=+...| T Consensus 60 S~nM~PEyW~eiAe~vk~~~~dG~---------DG-~VI~HGT-----------DT----------------M~YTaaAL 102 (347) T TIGR00519 60 SENMKPEYWVEIAEAVKKEYDDGY---------DG-VVITHGT-----------DT----------------MAYTAAAL 102 (347) T ss_pred CCCCCCHHHHHHHHHHHHHHHCCC---------CE-EEEECCC-----------CH----------------HHHHHHHH T ss_conf 567786257999999999851689---------83-9992378-----------83----------------68999999 Q ss_pred HHHHHHCCCCEEEECCC Q ss_conf 99985168005898159 Q gi|255764476|r 196 KVLFDSLDFLVWHRDQA 212 (792) Q Consensus 196 r~llda~P~~vw~~D~d 212 (792) .-||.++|.||.+.... T Consensus 103 SFML~~~~kPvv~tGaQ 119 (347) T TIGR00519 103 SFMLETLPKPVVFTGAQ 119 (347) T ss_pred HHHHHHCCCCEEEECCC T ss_conf 99997379979998376 No 194 >pfam11359 gpUL132 Glycoprotein UL132. Glycoprotein UL132 is a low-abundance structural component of Human cytomegalovirus (HCMV). The function of this protein is not fully understood. Probab=20.36 E-value=42 Score=11.72 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=21.6 Q ss_pred HHHHHHCCCCEEEECCCCEE--EEECHHHHH Q ss_conf 99996203432899689848--864058887 Q gi|255764476|r 437 GETIDHLSEGVAVFGPDGRI--KLSNPAFRS 465 (792) Q Consensus 437 ~~~ld~l~e~vav~~~dgr~--~~~N~a~~~ 465 (792) +++.++=++-|..|+.||.+ .++||.|.+ T Consensus 146 re~m~~Dp~NViYF~KdGnLdTSFVNPnYG~ 176 (235) T pfam11359 146 RETMDDDPDNVIYFDKDGNLDTSFVNPNYGH 176 (235) T ss_pred HHHCCCCCCCEEEECCCCCCCCCEECCCCCC T ss_conf 5420379663688815887322001777788 No 195 >PRK01631 hypothetical protein; Provisional Probab=20.27 E-value=43 Score=11.70 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCE Q ss_conf 99999999999999999999620343289968984 Q gi|255764476|r 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455 (792) Q Consensus 421 E~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr 455 (792) ||..+...| ++..+..+.+..+++-|+|++|. T Consensus 27 EQ~~LR~eY---L~~fR~~~~~~i~~~kvvD~~Gn 58 (76) T PRK01631 27 EQQMLRQNY---TQTFRGSLDSILLNTKIVDQNGL 58 (76) T ss_pred HHHHHHHHH---HHHHHHHHHHHHCCCEEECCCCC T ss_conf 999999999---99999999988325426899989 Done!