Query         gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 792
No_of_seqs    244 out of 16744
Neff          7.6 
Searched_HMMs 39220
Date          Sun May 29 18:43:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764476.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK11091 aerobic respiration c 100.0       0       0  571.0  44.2  355  419-791   140-506 (779)
  2 PRK10841 hybrid sensory kinase 100.0       0       0  560.0  40.2  330  432-791   355-691 (947)
  3 PRK09959 hybrid sensory histid 100.0       0       0  548.9  40.6  364  417-791   559-937 (1197)
  4 TIGR02966 phoR_proteo phosphat 100.0       0       0  535.7  33.0  331  431-788     3-339 (339)
  5 PRK13557 histidine kinase; Pro 100.0       0       0  509.0  43.3  347  418-792    21-394 (538)
  6 PRK11006 phoR phosphate regulo 100.0       0       0  508.1  41.3  332  427-791    91-424 (431)
  7 PRK11360 sensory histidine kin 100.0       0       0  497.6  44.3  328  437-791   264-600 (607)
  8 TIGR02956 TMAO_torS TMAO reduc 100.0       0       0  503.4  23.6  227  562-792   498-737 (1052)
  9 PRK11466 hybrid sensory histid 100.0       0       0  488.5  32.8  229  557-791   432-663 (912)
 10 PRK13560 hypothetical protein; 100.0       0       0  440.4  63.5  661   66-791    63-804 (807)
 11 PRK09303 adaptive-response sen 100.0       0       0  476.0  35.9  304  459-791    68-376 (378)
 12 PRK11107 hybrid sensory histid 100.0       0       0  481.3  31.7  233  555-791   279-519 (920)
 13 PRK11073 glnL nitrogen regulat 100.0       0       0  429.1  39.9  327  436-791     9-348 (348)
 14 PRK10490 sensor protein KdpD;  100.0       0       0  438.0  31.9  231  559-792   654-884 (895)
 15 PRK10364 sensor protein ZraS;  100.0       0       0  418.6  32.0  234  543-791   217-450 (455)
 16 PRK13837 two-component VirA-li 100.0       0       0  418.0  30.9  238  543-791   425-679 (831)
 17 PRK11100 sensory histidine kin 100.0       0       0  401.6  32.7  217  570-791   257-474 (475)
 18 PRK10549 signal transduction h 100.0       0       0  398.0  33.0  229  559-792   231-461 (467)
 19 PRK09835 sensor kinase CusS; P 100.0       0       0  385.8  33.8  229  559-792   252-482 (482)
 20 COG5002 VicK Signal transducti 100.0       0       0  391.1  28.9  349  413-791    89-449 (459)
 21 COG2205 KdpD Osmosensitive K+  100.0       0       0  379.6  29.0  227  563-792   654-881 (890)
 22 PRK10337 sensor protein QseC;  100.0       0       0  365.9  31.3  222  560-788   225-446 (446)
 23 PRK09470 cpxA two-component se 100.0       0       0  360.3  31.8  233  550-791   224-458 (461)
 24 PRK10604 sensor protein RstB;  100.0       0       0  356.5  30.2  220  560-791   203-424 (433)
 25 PRK10755 sensor protein BasS/P 100.0       0       0  355.1  30.9  227  553-790   127-355 (355)
 26 PRK11086 sensory histidine kin 100.0       0       0  347.8  34.4  306  432-791   219-535 (541)
 27 PRK09467 envZ osmolarity senso 100.0       0       0  342.3  30.7  227  549-792   211-437 (437)
 28 PRK10815 sensor protein PhoQ;  100.0       0       0  340.6  31.7  221  562-792   259-479 (484)
 29 TIGR01386 cztS_silS_copS heavy 100.0       0       0  343.4  23.2  222  560-789   252-483 (483)
 30 COG3852 NtrB Signal transducti 100.0 4.2E-45       0  327.0  31.8  327  437-791    10-355 (363)
 31 COG4191 Signal transduction hi 100.0 1.4E-45       0  329.0  28.3  239  544-792   357-603 (603)
 32 TIGR02938 nifL_nitrog nitrogen 100.0 5.6E-45       0  326.0  27.6  465  193-790     4-496 (496)
 33 COG4251 Bacteriophytochrome (l 100.0 2.8E-45       0  327.7  23.5  233  554-791   509-742 (750)
 34 COG5000 NtrY Signal transducti 100.0   2E-41       0  301.6  32.8  349  410-791   338-709 (712)
 35 COG0642 BaeS Signal transducti 100.0 2.9E-35 7.5E-40  259.4  32.1  216  568-791   114-330 (336)
 36 TIGR02916 PEP_his_kin putative 100.0 2.9E-35 7.4E-40  259.4  25.3  225  546-789   459-696 (696)
 37 PRK09776 putative sensor prote 100.0 9.1E-32 2.3E-36  235.5  40.7  367  176-557   287-686 (1116)
 38 COG3290 CitA Signal transducti 100.0 6.6E-32 1.7E-36  236.4  29.9  310  431-791   212-532 (537)
 39 PRK13560 hypothetical protein; 100.0 1.1E-30 2.8E-35  228.0  34.4  501  184-714    58-699 (807)
 40 COG4192 Signal transduction hi 100.0 5.8E-31 1.5E-35  230.0  23.2  239  544-792   424-668 (673)
 41 PRK09776 putative sensor prote 100.0 1.1E-26 2.7E-31  200.8  37.0  368   55-431   289-686 (1116)
 42 smart00387 HATPase_c Histidine 100.0 2.6E-28 6.7E-33  211.8  15.5  110  682-791     1-111 (111)
 43 pfam02518 HATPase_c Histidine  100.0 8.1E-28 2.1E-32  208.4  15.7  110  682-791     1-111 (111)
 44 cd00075 HATPase_c Histidine ki  99.9 2.7E-26 6.8E-31  198.0  13.3  102  687-788     1-103 (103)
 45 PRK11359 cAMP phosphodiesteras  99.9 2.5E-22 6.4E-27  170.8  29.8  224   67-304     9-257 (799)
 46 PRK10618 phosphotransfer inter  99.9   1E-20 2.6E-25  159.8  35.5  331  418-791   333-669 (881)
 47 PRK11359 cAMP phosphodiesteras  99.9 4.3E-20 1.1E-24  155.5  25.1  226  187-427     6-256 (799)
 48 PRK13559 hypothetical protein;  99.9 2.3E-18 5.9E-23  143.6  32.5  298  436-792    47-363 (363)
 49 KOG0519 consensus               99.9 5.8E-24 1.5E-28  182.0   3.0  233  553-791   200-489 (786)
 50 PRK10547 chemotaxis protein Ch  99.9 3.5E-19 8.8E-24  149.3  21.7  162  617-790   315-515 (662)
 51 COG0643 CheA Chemotaxis protei  99.8 1.2E-18 3.1E-23  145.5  19.4  167  612-790   365-573 (716)
 52 PRK10935 nitrate/nitrite senso  99.8 5.6E-17 1.4E-21  134.2  25.8  190  574-792   366-564 (568)
 53 PRK10600 nitrate/nitrite senso  99.7 7.5E-14 1.9E-18  112.7  26.6  185  579-791   372-557 (569)
 54 PRK11091 aerobic respiration c  99.7 9.4E-16 2.4E-20  125.8  14.9  135  170-307   132-278 (779)
 55 PRK11644 sensory histidine kin  99.7 8.3E-14 2.1E-18  112.4  23.9  183  579-791   314-497 (497)
 56 COG4585 Signal transduction hi  99.7 6.9E-14 1.7E-18  113.0  22.9  196  563-790   169-365 (365)
 57 TIGR02938 nifL_nitrog nitrogen  99.7 1.2E-15 3.1E-20  125.0  13.7  196  307-531     5-220 (496)
 58 COG3920 Signal transduction hi  99.6 1.1E-12 2.9E-17  104.7  24.4  207  543-792     2-217 (221)
 59 COG2972 Predicted signal trans  99.6   3E-12 7.7E-17  101.8  23.4  185  573-792   263-454 (456)
 60 PRK13557 histidine kinase; Pro  99.6 7.5E-14 1.9E-18  112.8  13.7  125  192-319    27-168 (538)
 61 PRK03660 anti-sigma F factor;   99.6 5.4E-14 1.4E-18  113.7  12.2  100  683-790    36-138 (146)
 62 COG3850 NarQ Signal transducti  99.6 2.3E-11 5.8E-16   95.7  24.4  179  584-791   388-569 (574)
 63 COG3275 LytS Putative regulato  99.5 1.8E-11 4.6E-16   96.5  20.2  171  575-791   371-552 (557)
 64 pfam00512 HisKA His Kinase A (  99.4 8.7E-13 2.2E-17  105.4   8.0   65  569-636     2-66  (66)
 65 COG3851 UhpB Signal transducti  99.3 3.9E-09 9.9E-14   80.5  23.3  185  572-790   306-494 (497)
 66 smart00388 HisKA His Kinase A   99.2 5.5E-11 1.4E-15   93.1   8.8   65  569-636     2-66  (66)
 67 COG4564 Signal transduction hi  99.2 5.7E-09 1.4E-13   79.3  18.1  180  583-791   265-448 (459)
 68 PRK10060 RNase II stability mo  99.2 1.2E-08 3.1E-13   77.1  18.9  176  119-308    46-236 (663)
 69 pfam08448 PAS_4 PAS fold. The   99.1   4E-10   1E-14   87.2   8.1   99  199-300     1-110 (110)
 70 PRK11006 phoR phosphate regulo  99.1 1.2E-08 3.1E-13   77.1  15.3  130  173-310    78-209 (431)
 71 KOG0787 consensus               99.1 6.4E-08 1.6E-12   72.1  18.7  182  607-790   174-380 (414)
 72 PRK10060 RNase II stability mo  99.1 6.8E-09 1.7E-13   78.8  12.9  208  201-432    15-236 (663)
 73 cd00082 HisKA Histidine Kinase  99.1 6.1E-10 1.6E-14   86.0   7.4   63  568-632     3-65  (65)
 74 PRK09959 hybrid sensory histid  99.0 9.5E-09 2.4E-13   77.8  12.1  135  174-310   557-703 (1197)
 75 PRK13559 hypothetical protein;  99.0 2.7E-08 6.9E-13   74.7  12.7  112  191-305    43-169 (363)
 76 PRK13558 bacterio-opsin activa  98.9 5.2E-08 1.3E-12   72.8  13.7  119  193-314   158-291 (674)
 77 PRK13558 bacterio-opsin activa  98.9 1.2E-07 3.1E-12   70.2  15.0  121  300-431   152-284 (674)
 78 PRK11360 sensory histidine kin  98.9 1.3E-07 3.4E-12   69.9  13.9  115  307-432   262-382 (607)
 79 pfam00989 PAS PAS fold. The PA  98.9 1.9E-08 4.9E-13   75.7   8.7   99  194-295     2-112 (112)
 80 PRK04069 serine-protein kinase  98.8 9.4E-08 2.4E-12   71.0  11.7   96  686-787    42-140 (158)
 81 TIGR02040 PpsR-CrtJ transcript  98.8 2.3E-07 5.9E-12   68.3  13.1  266   75-342     1-298 (453)
 82 COG3829 RocR Transcriptional r  98.7 2.8E-06 7.3E-11   60.8  16.8   50  555-607   419-468 (560)
 83 pfam08448 PAS_4 PAS fold. The   98.7 1.9E-08 4.9E-13   75.7   5.6   41  440-480     1-41  (110)
 84 pfam00989 PAS PAS fold. The PA  98.7 7.7E-08   2E-12   71.6   7.7  103  437-545     4-112 (112)
 85 TIGR00229 sensory_box PAS doma  98.7 3.8E-07 9.6E-12   66.9  10.7  111  191-304     3-129 (130)
 86 COG1389 DNA topoisomerase VI,   98.7 2.1E-07 5.2E-12   68.7   9.3   16  323-338   212-227 (538)
 87 TIGR02966 phoR_proteo phosphat  98.6 7.6E-07 1.9E-11   64.8  10.9  116  189-309     2-122 (339)
 88 TIGR01925 spIIAB anti-sigma F   98.6 1.3E-07 3.3E-12   70.0   6.8  104  672-787    29-135 (137)
 89 PRK04184 DNA topoisomerase VI   98.6 4.8E-07 1.2E-11   66.1   9.4   16  543-558   433-449 (533)
 90 PRK11073 glnL nitrogen regulat  98.6 2.5E-06 6.4E-11   61.2  12.8  113  307-430     8-122 (348)
 91 TIGR01052 top6b DNA topoisomer  98.5 8.4E-07 2.2E-11   64.5   9.1   28  194-221   198-226 (662)
 92 COG2172 RsbW Anti-sigma regula  98.5 3.8E-06 9.6E-11   60.0  11.5   97  683-787    37-140 (146)
 93 TIGR00229 sensory_box PAS doma  98.4 3.4E-06 8.6E-11   60.3   9.8  115  435-555     6-130 (130)
 94 PRK00095 mutL DNA mismatch rep  98.3 1.6E-06   4E-11   62.6   6.2   37  181-217   160-196 (612)
 95 COG3829 RocR Transcriptional r  98.3 2.3E-05 5.7E-10   54.7  12.0  146  196-349     4-160 (560)
 96 TIGR02040 PpsR-CrtJ transcript  98.1 2.8E-05 7.2E-10   54.0   8.5  264  198-478     1-307 (453)
 97 PRK10820 DNA-binding transcrip  98.0 0.00044 1.1E-08   45.9  13.7  105  190-300    77-190 (513)
 98 COG5000 NtrY Signal transducti  98.0 0.00071 1.8E-08   44.4  13.8   99  310-427   374-482 (712)
 99 KOG0519 consensus               97.9 5.7E-06 1.4E-10   58.8   2.2  210  564-775   381-619 (786)
100 COG5385 Uncharacterized protei  97.9  0.0023 5.9E-08   40.9  16.8  195  572-790    18-214 (214)
101 TIGR00585 mutl DNA mismatch re  97.9 6.4E-05 1.6E-09   51.6   7.1   29  396-424   137-170 (367)
102 PRK10841 hybrid sensory kinase  97.9  0.0009 2.3E-08   43.7  12.9  114  182-314   346-465 (947)
103 pfam10090 DUF2328 Uncharacteri  97.8  0.0034 8.6E-08   39.8  16.1  171  586-779     3-175 (181)
104 COG5002 VicK Signal transducti  97.7  0.0014 3.6E-08   42.4  11.7  126  181-311    99-231 (459)
105 PRK10820 DNA-binding transcrip  97.6  0.0034 8.6E-08   39.8  12.3   51  302-352    76-126 (513)
106 COG0323 MutL DNA mismatch repa  97.4 0.00062 1.6E-08   44.8   6.3  127   83-216    45-197 (638)
107 PRK11086 sensory histidine kin  97.3   0.013 3.4E-07   35.7  30.6  107  305-429   220-332 (541)
108 smart00091 PAS PAS domain. PAS  97.3 0.00044 1.1E-08   45.8   4.9   39  439-477     6-44  (67)
109 cd00130 PAS PAS domain; PAS mo  97.2  0.0031 7.9E-08   40.0   8.7   36  444-479     2-37  (103)
110 COG2202 AtoS FOG: PAS/PAC doma  97.2    0.02 5.1E-07   34.5  13.7   62  417-478    95-156 (232)
111 TIGR01924 rsbW_low_gc anti-sig  97.0  0.0026 6.7E-08   40.5   6.5   97  687-787    44-144 (161)
112 PRK11388 DNA-binding transcrip  97.0    0.02   5E-07   34.5  10.9  151  188-350    57-247 (639)
113 COG2202 AtoS FOG: PAS/PAC doma  97.0   0.029 7.5E-07   33.4  17.0   52  293-344    95-150 (232)
114 smart00091 PAS PAS domain. PAS  97.0  0.0014 3.7E-08   42.3   4.9   56  194-252     2-58  (67)
115 cd00130 PAS PAS domain; PAS mo  96.9   0.011 2.7E-07   36.4   9.2   38  315-352     1-38  (103)
116 PTZ00272 heat shock protein 83  96.8   0.016 4.1E-07   35.2   8.8   36  619-659   630-665 (701)
117 COG3852 NtrB Signal transducti  96.5   0.043 1.1E-06   32.2   9.8   90  195-289     9-106 (363)
118 PRK05218 heat shock protein 90  96.2  0.0082 2.1E-07   37.1   4.6   33  620-657   579-611 (612)
119 PRK11388 DNA-binding transcrip  96.1     0.1 2.6E-06   29.7  11.0   37  192-228   202-238 (639)
120 pfam08447 PAS_3 PAS fold. The   96.1   0.034 8.6E-07   32.9   7.4   75  456-535     1-78  (90)
121 smart00433 TOP2c Topoisomerase  95.9  0.0021 5.3E-08   41.2   0.5   11  402-412   237-247 (594)
122 COG0326 HtpG Molecular chapero  95.6   0.027 6.9E-07   33.6   5.0   44  161-214   171-214 (623)
123 COG3290 CitA Signal transducti  95.6    0.17 4.3E-06   28.1  26.1  117  187-310   209-332 (537)
124 COG3283 TyrR Transcriptional r  95.3    0.17 4.4E-06   28.1   8.3   87  194-286    81-168 (511)
125 PRK05644 gyrB DNA gyrase subun  95.2  0.0027 6.8E-08   40.5  -1.2   11  732-742   691-701 (725)
126 COG3283 TyrR Transcriptional r  95.1   0.094 2.4E-06   29.9   6.6   61  306-377    80-140 (511)
127 PTZ00130 heat shock protein 90  94.3   0.095 2.4E-06   29.9   5.0   22  186-210   259-280 (824)
128 PTZ00108 DNA topoisomerase II;  94.1   0.057 1.4E-06   31.4   3.5   15  447-461  1032-1046(1506)
129 PRK05559 DNA topoisomerase IV   94.0  0.0059 1.5E-07   38.1  -1.7   12  402-413   270-281 (633)
130 KOG3558 consensus               94.0    0.26 6.7E-06   26.9   6.6   63   74-136   123-185 (768)
131 TIGR01059 gyrB DNA gyrase, B s  93.7   0.051 1.3E-06   31.7   2.6   51  550-601   588-638 (818)
132 COG5381 Uncharacterized protei  93.5    0.19 4.9E-06   27.8   5.3   87  687-774    64-163 (184)
133 PRK13719 conjugal transfer tra  93.5    0.51 1.3E-05   24.8  10.6   32  195-226    21-52  (220)
134 KOG1979 consensus               93.4    0.16 4.1E-06   28.3   4.7   29   83-114    49-77  (694)
135 PTZ00109 DNA gyrase subunit b;  92.7   0.032 8.1E-07   33.1   0.3   33  127-159    94-127 (941)
136 COG0187 GyrB Type IIA topoisom  91.9   0.043 1.1E-06   32.2   0.2   10  403-412   274-283 (635)
137 KOG1978 consensus               90.9    0.25 6.5E-06   26.9   3.3   23  186-208   168-190 (672)
138 KOG1229 consensus               90.1    0.69 1.8E-05   23.9   4.9   54  188-245   153-206 (775)
139 KOG0355 consensus               88.6    0.62 1.6E-05   24.3   3.8   56  683-738   710-774 (842)
140 KOG1977 consensus               88.5     1.3 3.4E-05   22.0   5.4   16  753-768  1067-1082(1142)
141 COG0813 DeoD Purine-nucleoside  87.6    0.54 1.4E-05   24.7   3.0   10  396-405    54-63  (236)
142 TIGR01055 parE_Gneg DNA topois  84.9       1 2.6E-05   22.8   3.2   49  392-449   266-318 (647)
143 COG2461 Uncharacterized conser  82.5       3 7.6E-05   19.6   6.5  108  436-554   292-404 (409)
144 KOG0019 consensus               81.2     1.7 4.3E-05   21.3   3.1   10  204-213   243-252 (656)
145 KOG0020 consensus               80.9     3.4 8.6E-05   19.2   4.6   27  679-705   724-750 (785)
146 COG3887 Predicted signaling pr  80.8     3.4 8.7E-05   19.2  11.1  102  190-308    72-173 (655)
147 PRK11677 cytochrome d ubiquino  72.3     5.7 0.00015   17.7   5.7   21  544-564    27-47  (134)
148 PRK03124 S-adenosylmethionine   63.0     8.7 0.00022   16.4   6.0   76  667-742     6-99  (127)
149 pfam08670 MEKHLA MEKHLA domain  60.2     9.7 0.00025   16.1   4.4   37  442-478    39-77  (148)
150 pfam06305 DUF1049 Protein of u  59.9     9.8 0.00025   16.1   7.3   42   23-64     34-75  (80)
151 TIGR02373 photo_yellow photoac  58.4     1.3 3.2E-05   22.2  -1.7   55  430-484    14-68  (126)
152 TIGR01083 nth endonuclease III  51.4     6.4 0.00016   17.3   0.9   12  546-557   152-163 (192)
153 pfam08446 PAS_2 PAS fold. The   47.0      16  0.0004   14.7   7.2   28  451-478    23-50  (107)
154 pfam05127 DUF699 Putative ATPa  46.4      16 0.00041   14.6   2.7   42  719-760    76-120 (160)
155 TIGR01622 SF-CC1 splicing fact  46.1      13 0.00032   15.3   1.8   12  535-546   484-495 (531)
156 PRK10506 hypothetical protein;  43.9      17 0.00044   14.4   9.7  126   22-158    10-143 (155)
157 PRK08965 putative monovalent c  43.6      18 0.00045   14.3   3.0   60  680-743    94-153 (161)
158 TIGR01605 PYST-D Plasmodium yo  42.5      13 0.00034   15.2   1.4   11  755-765    13-23  (55)
159 COG3284 AcoR Transcriptional a  41.0      19 0.00049   14.1  10.3  157  183-350    67-267 (606)
160 TIGR00107 deoD purine nucleosi  40.6      19 0.00049   14.0   2.1   10  396-405    50-59  (234)
161 KOG0501 consensus               40.5      19  0.0005   14.0  12.3   84   93-178    43-140 (971)
162 PRK01706 S-adenosylmethionine   40.1      20  0.0005   14.0   6.0   77  666-742     7-102 (123)
163 TIGR03103 trio_acet_GNAT GNAT-  38.2      21 0.00054   13.8   5.2   32  401-435   333-367 (547)
164 TIGR01815 TrpE-clade3 anthrani  35.3      23  0.0006   13.5   2.0   86  691-789   536-636 (726)
165 TIGR02791 VirB5 P-type DNA tra  33.8      24  0.0006   13.4   1.6   12  459-470    69-80  (233)
166 pfam08066 PMC2NT PMC2NT (NUC01  33.2      25 0.00064   13.3   5.2   51  608-659    25-75  (91)
167 pfam00862 Sucrose_synth Sucros  32.8      26 0.00065   13.2   3.1  157  294-471   193-355 (550)
168 pfam02675 AdoMet_dc S-adenosyl  32.6      26 0.00066   13.2   5.8   63  678-740    11-91  (107)
169 TIGR02810 agaZ_gatZ D-tagatose  32.6      26 0.00066   13.2   4.3   37  279-315   169-216 (430)
170 TIGR00868 hCaCC calcium-activa  32.2      26 0.00067   13.2   2.8   38  714-751   645-683 (874)
171 TIGR02749 prenyl_cyano solanes  31.7      24 0.00061   13.4   1.3   28  548-575   267-296 (325)
172 pfam01899 MNHE Na+/H+ ion anti  30.4      28 0.00071   13.0   4.3   52  690-744    48-99  (106)
173 PRK11564 stationary phase indu  29.1      29 0.00075   12.8   7.0   17  720-736   341-357 (426)
174 pfam11853 DUF3373 Protein of u  27.8      31 0.00078   12.7   5.2   39   37-75     22-60  (485)
175 KOG3561 consensus               27.7      31 0.00079   12.6   4.1   85  120-240    55-139 (803)
176 KOG1232 consensus               27.6      31 0.00079   12.6   4.8  167  563-779   301-473 (511)
177 TIGR03330 SAM_DCase_Bsu S-aden  27.5      31  0.0008   12.6   5.8   72  668-739     6-95  (112)
178 TIGR00677 fadh2_euk methylenet  27.0      32 0.00081   12.6   1.3   36  621-658   270-306 (312)
179 COG4362 Nitric oxide synthase,  26.4      33 0.00083   12.5   5.5   72  294-367    78-152 (355)
180 pfam07045 DUF1330 Protein of u  25.1      34 0.00088   12.3   3.5   33  759-791     9-49  (65)
181 PRK06841 short chain dehydroge  23.7      36 0.00093   12.2   3.4   18  293-310    68-85  (255)
182 PRK06124 gluconate 5-dehydroge  23.7      36 0.00093   12.2   3.4   21  682-702   224-244 (259)
183 TIGR01120 rpiB ribose 5-phosph  23.3      25 0.00064   13.3   0.2   15  684-698    42-56  (143)
184 COG2015 Alkyl sulfatase and re  23.1      37 0.00095   12.1   6.6  105  204-323    64-171 (655)
185 KOG1845 consensus               23.0      34 0.00087   12.4   0.8   11  197-207   157-167 (775)
186 TIGR01818 ntrC nitrogen regula  22.8      38 0.00096   12.1   3.0   10  571-580   321-330 (471)
187 KOG4013 consensus               21.5      40   0.001   11.9   1.9   17  401-418    61-77  (255)
188 TIGR02406 ectoine_EctA L-2,4-d  21.4      34 0.00088   12.3   0.6   13  456-468   111-123 (162)
189 cd04680 Nudix_Hydrolase_21 Mem  21.0      41  0.0011   11.8   1.2   26  318-343     4-29  (120)
190 TIGR02470 sucr_synth sucrose s  20.7      42  0.0011   11.8   4.1   26  200-225   312-339 (790)
191 pfam03281 Mab-21 Mab-21 protei  20.6      42  0.0011   11.8   4.0   16  418-434   122-137 (360)
192 PRK07831 short chain dehydroge  20.5      42  0.0011   11.7   3.2   30  681-711   228-257 (261)
193 TIGR00519 asnASE_I L-asparagin  20.4      42  0.0011   11.7   2.4   60  116-212    60-119 (347)
194 pfam11359 gpUL132 Glycoprotein  20.4      42  0.0011   11.7   2.2   29  437-465   146-176 (235)
195 PRK01631 hypothetical protein;  20.3      43  0.0011   11.7   4.1   32  421-455    27-58  (76)

No 1  
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00  E-value=0  Score=571.04  Aligned_cols=355  Identities=23%  Similarity=0.357  Sum_probs=291.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf             57999999999999999999996203432899689848864058887828987894389838898877763025611468
Q gi|255764476|r  419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD  498 (792)
Q Consensus       419 ITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  498 (792)
                      |.+|++.+..+...-...+..+|+.++.|..-+.||++.-||++|+.++|++++++.|.+..+-........+...+. .
T Consensus       140 ~~~r~~~q~~l~~~~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~G~~e~eliG~t~~d~~~~e~a~~~~~~D~-~  218 (779)
T PRK11091        140 IKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLVGLTPKDVYSPEAAEKVIETDE-K  218 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHH-H
T ss_conf             999899999999988999988502875157877987653410999988099989984998355279988999997389-9


Q ss_pred             HHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEECCC--C---CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899874026544311568999725038--8899997058--8---76631232068999988889999999999999999
Q gi|255764476|r  499 LFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPN--A---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS  571 (792)
Q Consensus       499 ~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~pl~d--g---~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~  571 (792)
                      .+..      .....++-.+..+||+.  ++..-+|..|  |   +.+...+|||+||++|+       +||+|+|.|++
T Consensus       219 v~~~------~~~~~~e~w~~~~dG~~~~~e~~k~P~~d~~g~~~G~~g~~rDITerk~aee-------aLE~AsraKS~  285 (779)
T PRK11091        219 VFRH------NVSLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQD-------ALEKASRDKTT  285 (779)
T ss_pred             HHHC------CCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHH-------HHHHHHHHHHH
T ss_conf             9864------7982111346648986678998640135389978878630016017789999-------99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf             99996666322589999999997357778899899999999999999999999999999885149830002330699999
Q gi|255764476|r  572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL  651 (792)
Q Consensus       572 F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i  651 (792)
                      |+++||||||||||+|+||++||.+.   +|+++|++|++.|..|+++|+.|||||||||||++|+++++.+|||+.+++
T Consensus       286 FLAnMSHEIRTPLNgIlG~seLL~~t---~L~~eQre~l~~I~~S~~~Ll~LINDILD~SKIEaGkl~l~~~~fdl~~ll  362 (779)
T PRK11091        286 FISTISHELRTPLNGIVGLSRMLLDT---ELTAEQEKYLKTIHVSAITLGNIFNDIIDMDKMDRRKLQLDNQPVDFTDFL  362 (779)
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHH
T ss_conf             99872687565399999999998079---999999999999999999999999999999999669967887767599999


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-CEEEEEEEECCCC
Q ss_conf             9999999999984896899995698608-9987899999999998867753888688999999879-9899999978897
Q gi|255764476|r  652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSS  729 (792)
Q Consensus       652 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~-~~v~i~V~D~G~G  729 (792)
                      +++...+.+.+..+++.+.+++++++|. +.+|+.||+|||.||++||+|||+.|+ |.+++...+ ..+.|+|+|||+|
T Consensus       363 ~~v~~~~~~~A~~Kgl~l~~~~~~~lP~~v~gD~~RLrQIL~NLlsNAIKFT~~G~-V~l~v~~~~~~~l~f~V~DTGiG  441 (779)
T PRK11091        363 ADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYEDGDMLHFEVEDSGIG  441 (779)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCEEEEEEEECCCC
T ss_conf             99999999999974988999978999862863899999999999999977389997-79999982798899999957999


Q ss_pred             CCHHHHHHHCCCCEECCCC--CCC-CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             8977865414883762689--888-8566379999999996198699997889943999997347
Q gi|255764476|r  730 IPEDMCKSVFNRFVSNAHR--GQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       730 I~~e~~~riF~~F~~~~~~--~~~-~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      ||++.+++||+||++...+  +++ +||||||+|||++|++|||+|+|+|++|+||||+|+||..
T Consensus       442 I~~e~l~~IF~~F~Q~~~s~~~r~~~GTGLGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lpl~  506 (779)
T PRK11091        442 IPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHAP  506 (779)
T ss_pred             CCHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECC
T ss_conf             99999998705756066787776778876079999999998499799995599871799999766


No 2  
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00  E-value=0  Score=560.04  Aligned_cols=330  Identities=25%  Similarity=0.396  Sum_probs=281.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEC-CCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf             99999999962034328996-89848864058887828987894389838898877763025611468899874026544
Q gi|255764476|r  432 LVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE  510 (792)
Q Consensus       432 l~~~q~~~ld~l~e~vav~~-~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  510 (792)
                      ..+..+..+.+.+.|++++. +||..+++|......+..-                    .++.  ...+...+.+    
T Consensus       355 ~e~fnr~~i~~apvg~~~l~~~dg~~~~~n~~~~~~~~~~--------------------~~~~--~~~~~~~~~~----  408 (947)
T PRK10841        355 HEQFNRKIVASAPVGICILRTSDGTNILSNELAHNYLNML--------------------THED--RQRLTQIICG----  408 (947)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHHHHC--------------------CCCH--HHHHHHHHHC----
T ss_conf             8887788986177137999706886331038999987623--------------------7552--8999999861----


Q ss_pred             CCEEEEEEEECCEEEEEEEEEECCC-C-CE-EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3115689997250388899997058-8-76-6312320689999888899999999999999999999666632258999
Q gi|255764476|r  511 RKSLQGTLELLSDSVLEYSIIPLPN-A-QT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI  587 (792)
Q Consensus       511 r~~~~~~~~~~dG~~~~~~~~pl~d-g-~~-l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I  587 (792)
                      +..-...+...+++++..+.+|..= | .+ +.++.|||.||++|+.|++.++|+|+||+.|++|+++||||||||||+|
T Consensus       409 ~~~~~~~~~~~~~~~l~~~~~~~ry~~~~v~~c~~~Disar~~~e~~L~~a~~AAE~AN~AKS~FLAnMSHEIRTPLnGI  488 (947)
T PRK10841        409 QQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGI  488 (947)
T ss_pred             CCCCCEEEEECCCCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHH
T ss_conf             37883489935985799998653126860799999854078999999999999999999999899875856436128999


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999973577788998999999999999999999999999998851498300023306999999999999999984896
Q gi|255764476|r  588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI  667 (792)
Q Consensus       588 ~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i  667 (792)
                      +|++|||.+.   +|++.|++|++.|.+|++.|+.||||||||||||||+|+++..|||+.+++++++..+.+.+.+|++
T Consensus       489 lG~lELL~~t---~L~~~Qr~~l~tI~~Ss~~LL~lINDILDfSKIEAGkl~Le~~~F~l~~lv~~v~~~~~~~A~~K~L  565 (947)
T PRK10841        489 IGNLDLLQTK---ELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVKKQL  565 (947)
T ss_pred             HHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999998079---9998999999999999999999999999999880498479852568999999999999999997398


Q ss_pred             EEEEEECCCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECC
Q ss_conf             899995698608-9987899999999998867753888688999999879989999997889789778654148837626
Q gi|255764476|r  668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA  746 (792)
Q Consensus       668 ~l~~~~~~~~~~-v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~  746 (792)
                      .|.+.++|++|. +.||+.||+||+.||++||+|||+.|+ |.+++...++.+.|+|+|||+||+++.+++||+||++.+
T Consensus       566 ~L~~~idp~vP~~v~GDp~RLrQIL~NLLsNAIKFT~~G~-I~L~V~~~~~~L~fsV~DTGIGIsee~~~~LFepF~QaD  644 (947)
T PRK10841        566 GLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDTGC-IILHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG  644 (947)
T ss_pred             EEEEEECCCCCCCEEECHHHHHHHHHHHHHHHEEECCCCE-EEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCHHHCCC
T ss_conf             7999979999965860688999999998877746679958-999999849999999998289989999998847111578


Q ss_pred             CC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             89--8888566379999999996198699997889943999997347
Q gi|255764476|r  747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       747 ~~--~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      .+  .+++||||||||||++|++|||+|+|+|++|+||+|+|+||..
T Consensus       645 ~S~tR~yGGTGLGLAI~krLVeLMGG~I~VeSe~G~GStFtf~LPL~  691 (947)
T PRK10841        645 TGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTVRIPLY  691 (947)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf             75434579987419999999997599589991699807999997564


No 3  
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00  E-value=0  Score=548.92  Aligned_cols=364  Identities=21%  Similarity=0.323  Sum_probs=283.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             59579999999999999999999962034328996898488640588878289878943898388988777630256114
Q gi|255764476|r  417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG  496 (792)
Q Consensus       417 ~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~  496 (792)
                      +-|-.|++.|++++..+..++..+|+++.+|.+.+.+|++..||.+|+..|+-+......-+. ....   .+.   .+.
T Consensus       559 r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~~~~~~~-~~~~---~~~---~~~  631 (1197)
T PRK09959        559 RSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPL-ENSE---SPF---KDV  631 (1197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCC-CCCC---CHH---HHH
T ss_conf             999999999999998899999998369987699825561224118889875231444213565-3222---215---677


Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEECCEE----EEEE-EEEECCCC--C-EEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6889987402654431156899972503----8889-99970588--7-6631232068999988889999999999999
Q gi|255764476|r  497 WDLFAAIITSFDDERKSLQGTLELLSDS----VLEY-SIIPLPNA--Q-TMLTFVNVTDSVRAERALTEKNEALRKADEI  568 (792)
Q Consensus       497 ~~~~~~~i~~~~~~r~~~~~~~~~~dG~----~~~~-~~~pl~dg--~-~l~~~~DIT~~k~~E~aL~e~~eale~a~~l  568 (792)
                      +...........+.+....-.+...+|.    +..+ ...++|.+  + .+..+.|||++|++|++|++.++++|+|++.
T Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~~Ae~An~A  711 (1197)
T PRK09959        632 FSNTHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAINATVA  711 (1197)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77778998753101210001453057754236775310003764444010115464128999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECH
Q ss_conf             999999966663225899999999973577788998999-9999999999999999999999988514983000233069
Q gi|255764476|r  569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL  647 (792)
Q Consensus       569 k~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~-e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl  647 (792)
                      |++|+++||||||||||+|+|+++||...   +++++|+ ++++.|..|+++|+.||||||||||||+|+++++.+++|+
T Consensus       712 KS~FLA~MSHEIRTPLn~IiG~~eLL~~~---~l~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~~l  788 (1197)
T PRK09959        712 KSQFLATMSHEIRTPISSIMGFLELLSGS---GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDI  788 (1197)
T ss_pred             HHHHHHHCCHHHCCHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
T ss_conf             88888747353165689999999998468---999899999999999999999998888899989853886214520179


Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--EEC---CEEEE
Q ss_conf             999999999999999848968999956986-089987899999999998867753888688999999--879---98999
Q gi|255764476|r  648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDN---GDFIF  721 (792)
Q Consensus       648 ~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~-~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~--~~~---~~v~i  721 (792)
                      .+++++++..+.+.+..|++.|.++..... ..+.+|+.||+|||.|||+||+|||+.|+ |.|++.  ..+   ..+.|
T Consensus       789 ~~li~~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT~~G~-V~i~~~~~~~~~~~~~l~~  867 (1197)
T PRK09959        789 PTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKM  867 (1197)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCE-EEEEEEEEECCCCEEEEEE
T ss_conf             999999999999999967968999558987513526788999999999875374687978-9999998651798069999


Q ss_pred             EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             9997889789778654148837626898888566379999999996198699997889943999997347
Q gi|255764476|r  722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      +|+|||+|||++.+++||+||++.+.+.+++||||||+|||++|++|||+|+|+|++|+||+|+|+||.+
T Consensus       868 ~V~DTGiGI~~~~~~~iF~pF~Q~s~~r~~~GTGLGLaI~k~LvelMgG~I~v~S~~G~GS~F~~~lpl~  937 (1197)
T PRK09959        868 TIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVE  937 (1197)
T ss_pred             EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf             9997787889889975367862477887889848359999999998799289993599944999999756


No 4  
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310   Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=100.00  E-value=0  Score=535.70  Aligned_cols=331  Identities=24%  Similarity=0.340  Sum_probs=286.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf             99999999996203432899689848864058887828987894389838898877763025611468899874026544
Q gi|255764476|r  431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE  510 (792)
Q Consensus       431 ~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  510 (792)
                      ++++..++.+..|++||.|++.+|.|.+||+++++++|+....-.|. ++..++       ..|+.-+.+.....    .
T Consensus         3 ~~~~rf~~a~~AlPDavv~ld~~~~I~W~N~~A~~~LGl~~p~D~Gq-~i~~l~-------R~P~F~~yl~~~~~----t   70 (339)
T TIGR02966         3 ALLSRFRAAAQALPDAVVVLDEEGQIEWCNKAAERLLGLRWPDDLGQ-RITNLI-------RHPEFVEYLAAGRF----T   70 (339)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCCCHHHCC-CHHHHC-------CCHHHHHHHHCCCC----C
T ss_conf             68899999997589829997289837862148898627427345077-021210-------57679999733555----5


Q ss_pred             CCE--EEEE-EEECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             311--5689-9972503888999970588766312320689999888899999999999999999999666632258999
Q gi|255764476|r  511 RKS--LQGT-LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI  587 (792)
Q Consensus       511 r~~--~~~~-~~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I  587 (792)
                      ..+  .... ....+..+++....|+.++..|+.++|||+.++.|+              |+.+||||||||||||||.|
T Consensus        71 ~~p~~L~~~~~p~~~~~~l~~r~~PY~~~~~Ll~~RDvT~l~rLe~--------------mRrDFVANVSHELRTPLTVl  136 (339)
T TIGR02966        71 SEPEQLELPDSPINEERVLEIRIMPYGEEQKLLVARDVTRLRRLEQ--------------MRRDFVANVSHELRTPLTVL  136 (339)
T ss_pred             CCCCCEEECCCCCCCCCEEEEEEEEECCCCEEEEEECHHHHHHHHH--------------HHHHHCCCCCCCCCCCHHHH
T ss_conf             7885311046888866479999997569837999876368999986--------------53431144521114540355


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999973577788998999999999999999999999999998851498300023306999999999999999984896
Q gi|255764476|r  588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI  667 (792)
Q Consensus       588 ~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i  667 (792)
                      .||.|+|.+....+-++.++.|++.+.+.+.||..||+|+|.|||||++.-+..-++||+..+|+...........+++.
T Consensus       137 ~GyLEtl~~~~~~~~~~~~~~~l~~M~~Q~~RM~~LV~dLL~LSrlE~~~~~~~~~~V~~~~ll~~l~~~A~~ls~~~~h  216 (339)
T TIGR02966       137 RGYLETLEDGPVDEDPEEWNRALELMQEQSQRMQSLVEDLLTLSRLESAANPPEDEPVDVPALLDHLRDEAEALSQGKQH  216 (339)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf             68999755236778808899999999999999999999998887641578884556568799999999999999711883


Q ss_pred             EEEEEE-CCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECC
Q ss_conf             899995-6986089987899999999998867753888688999999879989999997889789778654148837626
Q gi|255764476|r  668 RIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA  746 (792)
Q Consensus       668 ~l~~~~-~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~  746 (792)
                      ++.+++ ++++ .|.||+.+|+++|.||++|||||||+||+|+|+..+.++.++|+|+|||+||||+.++||+|+||+-+
T Consensus       217 ~I~~~~pd~~~-~~~G~e~~L~SAf~NLv~NAikYTp~gg~I~v~W~~~~~ga~fsV~DtG~GI~~eHipRLTERFYRVD  295 (339)
T TIGR02966       217 QITFEIPDAGL-DLLGNEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDEGGAEFSVTDTGIGIAPEHIPRLTERFYRVD  295 (339)
T ss_pred             EEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHCCCCCCEEEEEC
T ss_conf             89998238885-30144777999999998875300899887999999857803999987798987313775420012305


Q ss_pred             CCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             898--888566379999999996198699997889943999997
Q gi|255764476|r  747 HRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI  788 (792)
Q Consensus       747 ~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~l  788 (792)
                      .+.  ..+||||||||||++++.|++++.|+|++|+||||+|.|
T Consensus       296 ~~RSR~tGGTGLGLAIVKH~L~rH~a~L~I~Se~G~GS~F~~~F  339 (339)
T TIGR02966       296 KSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF  339 (339)
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEC
T ss_conf             33415788984336899998741487899998853760688759


No 5  
>PRK13557 histidine kinase; Provisional
Probab=100.00  E-value=0  Score=508.97  Aligned_cols=347  Identities=19%  Similarity=0.233  Sum_probs=280.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC---CCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             9579999999999999999999962034328996---8984886405888782898789438983889887776302561
Q gi|255764476|r  418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES  494 (792)
Q Consensus       418 DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~---~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~  494 (792)
                      |++++..         ....+.+++.+++|.|.|   +||+|.|+|++|++|+||+.+++.|++ +..+..   | ..+.
T Consensus        21 ~~~~~~~---------~~~~~~v~~~~~~~~~~d~~~~Dg~I~~vN~af~~~tGYs~eEviGk~-~~~L~~---p-~~~~   86 (538)
T PRK13557         21 DVSDHRS---------DIFFAAVETTRMPMIVTDPRQPDNPIVFANRAFLEMTGYAAEEIIGNN-CRFLQG---P-ETDR   86 (538)
T ss_pred             HHHHHHH---------HHHHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCC-HHHCCC---C-CCCH
T ss_conf             0567889---------999999960797389935899998799983999998795999986999-877089---8-8999


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE--EEEEECCCC--CE---EEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             146889987402654431156899972503888--999970588--76---63123206899998888999999999999
Q gi|255764476|r  495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNA--QT---MLTFVNVTDSVRAERALTEKNEALRKADE  567 (792)
Q Consensus       495 ~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~~~~--~~~~pl~dg--~~---l~~~~DIT~~k~~E~aL~e~~eale~a~~  567 (792)
                      ..+..+...+..-  .....+....++||+.++  ....|+.|.  ..   +.+.+|||++|++|++|+++ ++++    
T Consensus        87 ~~~~~~~~~i~~~--~~~~~E~~n~rKDG~~~w~~~~i~pv~d~~G~~~~~~~i~~DITerk~~E~~L~qa-qkle----  159 (538)
T PRK13557         87 ATVADVRDAIAER--REIATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQA-QKME----  159 (538)
T ss_pred             HHHHHHHHHHHCC--CCEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHH-HHHH----
T ss_conf             9999999999759--93687999987999999999899999989999999999883444999999999999-9999----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             9999999966663225899999999973577788-9-9899999999999999999999999999885149830002330
Q gi|255764476|r  568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI  645 (792)
Q Consensus       568 lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~-l-~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~v  645 (792)
                      .+.+|+++||||||||||+|+||+++|......+ . .++..+|++.|.++++++..||++||+|||.    .+++.+++
T Consensus       160 alg~~~a~isHEirnPL~~I~G~~~lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr~----~~l~~~~~  235 (538)
T PRK13557        160 ALGQLTGGIAHDFNNLLQVMSGYLDVLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFARK----QKLDGRVV  235 (538)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCEEE
T ss_conf             99999988788762699999999999986401688899999999999999999999999999997582----76877177


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-----------
Q ss_conf             699999999999999998489689999569860899878999999999988677538886889999998-----------
Q gi|255764476|r  646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----------  714 (792)
Q Consensus       646 dl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~-----------  714 (792)
                      |++++++++..+++. +..+++++.+++++++|.+.+|+.+|+|||.||++||+||+++||.|+|+++.           
T Consensus       236 ~l~~lv~~~~~l~~~-~~~~~i~l~~~~~~~l~~~~~D~~~l~qvl~NLl~NA~~a~~~gg~i~i~~~~~~~~~~~~~~~  314 (538)
T PRK13557        236 NLNGLVSGMGEMAER-TLGDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTVRTENVEITEHDLAMY  314 (538)
T ss_pred             CHHHHHHHHHHHHHH-HHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf             299999999999999-8529919999807988708755899999999989879986578975999998764154210012


Q ss_pred             ----ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             ----7998999999788978977865414883762689888856637999999999619869999788994399999734
Q gi|255764476|r  715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       715 ----~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                          .+.+++|+|+|||+|||++.++|||+||||++..+  +||||||||||+||++|||+|+|+|++|+||||+++||.
T Consensus       315 ~~~~~g~~v~i~V~DtG~GI~~e~~~rIFepFfttk~~~--~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v~lP~  392 (538)
T PRK13557        315 HQLPPGRYVSIAVTDTGSGMPPEILARVMEPFFTTKEEG--KGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPA  392 (538)
T ss_pred             CCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCEEECCCC--CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf             457888789999998689889899997725010422457--877724999999999879959999328987799999867


Q ss_pred             CC
Q ss_conf             79
Q gi|255764476|r  791 KE  792 (792)
Q Consensus       791 ~e  792 (792)
                      .+
T Consensus       393 ~~  394 (538)
T PRK13557        393 SE  394 (538)
T ss_pred             CC
T ss_conf             87


No 6  
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00  E-value=0  Score=508.09  Aligned_cols=332  Identities=21%  Similarity=0.301  Sum_probs=280.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf             99999999999999620343289968984886405888782898789438983889887776302561146889987402
Q gi|255764476|r  427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS  506 (792)
Q Consensus       427 ~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  506 (792)
                      +++..+++..++.++++++||.+++.+|+|.+||+++++|+||..++..+.+ +..+.       ..|+....+..    
T Consensus        91 ~~l~~~~~rfr~~~ealpDavvv~d~~g~I~~~N~aAe~l~G~~~~~~~G~~-I~~Li-------r~p~f~~~~~~----  158 (431)
T PRK11006         91 RELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLGLRWPEDNGQN-ILNLL-------RYPEFTQYLKT----  158 (431)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHCCCCHHHCCCC-HHHHH-------CCHHHHHHHHC----
T ss_conf             9999999999999964897699998999588356999998389983326997-78980-------88459999862----


Q ss_pred             CCCCCCEEEEEEEECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65443115689997250388899997058876631232068999988889999999999999999999966663225899
Q gi|255764476|r  507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN  586 (792)
Q Consensus       507 ~~~~r~~~~~~~~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~  586 (792)
                      ..   ......+...+|+.+++...|..+|+.++.++|||+.|++|+              +|.+|++|||||||||||+
T Consensus       159 ~~---~~~p~~~~~~~~~~le~~~~p~~~~~~llv~rDiT~~~~lE~--------------~R~dFvAnvSHELRTPLT~  221 (431)
T PRK11006        159 RD---FSRPLNLVLNNGRHLEIRVMPYTEGQLLMVARDVTQMHQLEG--------------ARRNFFANVSHELRTPLTV  221 (431)
T ss_pred             CC---CCCCEEEECCCCCEEEEEEEECCCCCEEEEEEECCHHHHHHH--------------HHHHHHHHCCHHHHHHHHH
T ss_conf             66---557625543887479999977379958999985659999999--------------9999998620866177999


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999997357778899899999999999999999999999999885149830002330699999999999999998489
Q gi|255764476|r  587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN  666 (792)
Q Consensus       587 I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~  666 (792)
                      |.||+|+|.+...  .++.+.+|++.|.+++.||..||+|+|++||+++|......+++|+..+++.+...... +..+.
T Consensus       222 I~G~~ElL~~~~~--~~~~~~~~l~~i~~~~~Rm~~LI~dLL~lsrle~~~~~~~~~~vd~~~ll~~l~~~~~~-l~~~~  298 (431)
T PRK11006        222 LQGYLEMMEEQPL--EGPMREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVLEREAQT-LSQKK  298 (431)
T ss_pred             HHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHC
T ss_conf             9999999857999--80999999999999999999999999999764258752136531399999999999999-98625


Q ss_pred             CEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECC
Q ss_conf             68999956986089987899999999998867753888688999999879989999997889789778654148837626
Q gi|255764476|r  667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA  746 (792)
Q Consensus       667 i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~  746 (792)
                      ..+.+++++++ .+.+|+.+|+|||.||++||+||+|+|+.|.|++...++.+.|+|+|+|+|||++.++|||+||++.+
T Consensus       299 ~~i~~~~~~~~-~v~~D~~~L~qvl~NLi~NAikytp~g~~I~I~~~~~~~~~~i~V~D~G~GI~~e~~~riFerFyR~d  377 (431)
T PRK11006        299 HTITFEVDDSL-KVLGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVD  377 (431)
T ss_pred             CCCCCCCCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECC
T ss_conf             66655689982-79978999999999999989974799977999999949989999998387859899998626888288


Q ss_pred             CC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             89--8888566379999999996198699997889943999997347
Q gi|255764476|r  747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       747 ~~--~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      .+  .+.+||||||||||+||+.|||+|+|+|++|+||||+|+||.+
T Consensus       378 ~~rs~~~gGtGLGLaIvK~Ive~HgG~I~v~S~~g~Gt~F~~~lP~~  424 (431)
T PRK11006        378 KARSRQTGGSGLGLAIVKHALNHHDSRLEIESTVGKGTRFSFVLPER  424 (431)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCH
T ss_conf             88879999554899999999998599899995599855999984865


No 7  
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=100.00  E-value=0  Score=497.61  Aligned_cols=328  Identities=20%  Similarity=0.337  Sum_probs=274.5

Q ss_pred             HHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             99996203432899689848864058887828987894389838898877763025611468899874026544311568
Q gi|255764476|r  437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG  516 (792)
Q Consensus       437 ~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~  516 (792)
                      ...++++.+||..+|.+|++.++||++++|+|++.+++.+++ +..+.       .+++....+...+... ......+.
T Consensus       264 e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~-~~~l~-------~~~~~~~~~~~~l~~~-~~~~~~~~  334 (607)
T PRK11360        264 ELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQP-YSMLF-------DNTQFYSPVLDTLEHG-TEHVALEI  334 (607)
T ss_pred             HHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC-HHHHC-------CCHHHHHHHHHHHHCC-CCCCCEEE
T ss_conf             999861046699997999499983899998587978985967-99957-------9576779999998537-74212489


Q ss_pred             EEEECCEEE-EEEEEEECCCC-----CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf             999725038-88999970588-----7663123206899998888999999999999999--999996666322589999
Q gi|255764476|r  517 TLELLSDSV-LEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNII  588 (792)
Q Consensus       517 ~~~~~dG~~-~~~~~~pl~dg-----~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~  588 (792)
                      .+...+|.. +.....|+.++     +.+++|+|||++|++|++|++       ++|+++  +|+++||||||||||+|.
T Consensus       335 ~~~~~~~~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~-------~erlaalGe~~A~vaHElRnPLt~I~  407 (607)
T PRK11360        335 SFPGRDRTIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMAR-------AERLAALGELMAGVAHEIRNPLTAIR  407 (607)
T ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96058834999999853576898588999999957789999999999-------99999999999998998715499999


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             99999735777889989999999999999999999999999988514983000233069999999999999999848968
Q gi|255764476|r  589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR  668 (792)
Q Consensus       589 G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~  668 (792)
                      ||+|+|.+..   .++..++|++.|.+.++||.++|+|+|+|||.+.+    +.+++|+++++++++..+++.+.++++.
T Consensus       408 g~~elL~~~~---~~~~~~~~l~~i~~e~~Rl~~li~~lL~~sr~~~~----~~~~v~l~~l~~~~~~~~~~~~~~~~i~  480 (607)
T PRK11360        408 GYVQILRQQT---SDPIHQEYLSVVLREVDSLNKVIQQLLEFSRPRHS----QWQQVSLNALVEEVLVLVQTAGVQARVD  480 (607)
T ss_pred             HHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCEECHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             9999986689---98799999999999999999999999985277888----8847869999999999999988867968


Q ss_pred             EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCEECCC
Q ss_conf             99995698608998789999999999886775388868899999987-99899999978897897786541488376268
Q gi|255764476|r  669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH  747 (792)
Q Consensus       669 l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~-~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~  747 (792)
                      +..++++++|.+.+|+.+|+|||.||+.||+||+|+||+|++++... ++.+.|+|+|||+|||++.+++||+||||++.
T Consensus       481 l~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~a~~~~g~I~i~~~~~~~~~v~i~V~D~G~GI~~e~~~~IFepF~ttk~  560 (607)
T PRK11360        481 FITELDNELPPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLELLKKIFDPFFTTKA  560 (607)
T ss_pred             EEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC
T ss_conf             99981898876998889999999999999628628996799999993698799999986768698999645589754899


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             98888566379999999996198699997889943999997347
Q gi|255764476|r  748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       748 ~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                          +||||||||||+||+.|||+|+|+|.+|+||||+++||..
T Consensus       561 ----~GtGLGLaI~k~Ive~hgG~I~v~S~~g~GT~F~i~LPl~  600 (607)
T PRK11360        561 ----SGTGLGLALSQRIINAHQGDIRVASLPGYGTTFTLILPIN  600 (607)
T ss_pred             ----CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf             ----9813379999999998899899996699986999998068


No 8  
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302   This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00  E-value=0  Score=503.38  Aligned_cols=227  Identities=28%  Similarity=0.537  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC
Q ss_conf             999999999999996666322589999999997357778899899999999999999999999999999885149--830
Q gi|255764476|r  562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG--IMK  639 (792)
Q Consensus       562 le~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG--~~~  639 (792)
                      +|+|||+||.|+|.||||||||||+|+|=++||.+.   +|+..|+.|++.|..|++.|+.|.||||||||||+|  .++
T Consensus       498 AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~---~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~  574 (1052)
T TIGR02956       498 AEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT---GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGGTHLS  574 (1052)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999748876887413511320113689999750589---98888999999998622789999846754677610874653


Q ss_pred             CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE
Q ss_conf             00233069999999999999999848968999956986089-98789999999999886775388868899999987998
Q gi|255764476|r  640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD  718 (792)
Q Consensus       640 l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v-~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~  718 (792)
                      +++.|||+..++.++..++..++..|+|+|.+++++++|.+ .||+.||+|||+||++||||||..|. |+|++...++.
T Consensus       575 i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~Gs-v~l~~~l~~~~  653 (1052)
T TIGR02956       575 ISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRGS-VVLRVSLNDDS  653 (1052)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCCE-EEEEEEECCCC
T ss_conf             45567788889999999999877403725674276542788753661344767654413200434526-99998855888


Q ss_pred             ------EEEEEEECCCCCCHHHHHHHCCCCEECCC-CCCCCCCCHHHHHHHHHHHHCCCE---EEEEEECCCCEEEEEEE
Q ss_conf             ------99999978897897786541488376268-988885663799999999961986---99997889943999997
Q gi|255764476|r  719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGH---VSISSSDEGVTTINCRI  788 (792)
Q Consensus       719 ------v~i~V~D~G~GI~~e~~~riF~~F~~~~~-~~~~~GtGLGLsiv~~iVe~hgG~---I~v~S~~G~Gttf~v~l  788 (792)
                            +.|.|.||||||+++.++.+|+||.+... .++.+|||||||||+++|++|||+   |+|+|++|+|+||.|+|
T Consensus       654 ~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~GScF~F~l  733 (1052)
T TIGR02956       654 SSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQGSCFWFTL  733 (1052)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEC
T ss_conf             98663478888624779987999854331012101373137765068999999997088876501666458750221242


Q ss_pred             ECCC
Q ss_conf             3479
Q gi|255764476|r  789 PSKE  792 (792)
Q Consensus       789 P~~e  792 (792)
                      |..+
T Consensus       734 pl~~  737 (1052)
T TIGR02956       734 PLAR  737 (1052)
T ss_pred             CCCC
T ss_conf             3133


No 9  
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00  E-value=0  Score=488.48  Aligned_cols=229  Identities=27%  Similarity=0.483  Sum_probs=214.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999996666322589999999997357778899899999999999999999999999999885149
Q gi|255764476|r  557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG  636 (792)
Q Consensus       557 e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG  636 (792)
                      ++++++|+||+.|++|+++||||||||||+|+||++||.+.   ++++.|++|++.|.+|+++|+.+|||||||||||+|
T Consensus       432 ~Ar~~AE~AnrAKS~FLA~MSHEIRTPLNgIlG~~eLL~~~---~l~~~qr~~l~~I~~s~~~LL~lInDILD~SkiEaG  508 (912)
T PRK11466        432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADN---PALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG  508 (912)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999871397677599999999998479---999899999999999999999999999999998189


Q ss_pred             --CCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             --830002330699999999999999998489689999569860-89987899999999998867753888688999999
Q gi|255764476|r  637 --IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA  713 (792)
Q Consensus       637 --~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~  713 (792)
                        +++++..||++.++++++...+.+.+..+++++.+++++++| .+.+|+.||+||+.||++||+|||+.| .|.+++.
T Consensus       509 ~~~l~l~~~pf~l~~ll~~v~~~~~~~a~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsNAiKFT~~G-~V~l~~~  587 (912)
T PRK11466        509 GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSNALRFTDEG-SIVLRSR  587 (912)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCC-EEEEEEE
T ss_conf             981388611568999999999999999983797899972799986086358899999999999870618996-7999999


Q ss_pred             EECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             879989999997889789778654148837626898888566379999999996198699997889943999997347
Q gi|255764476|r  714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       714 ~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      ..++.+.|+|+|||+|||++.+++||+||++.+  ++++||||||+|||++|++|||+|+|+|+||+||+|+|+||..
T Consensus       588 ~~~~~l~~~V~DTGiGI~~e~~~~IF~~F~Q~~--~~~gGtGLGLaI~k~LvelMGG~I~V~S~~G~GS~F~~~LPl~  663 (912)
T PRK11466        588 TDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLR  663 (912)
T ss_pred             ECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECC
T ss_conf             869789999850899999999998844761588--9989926689999999998799799971699872899999777


No 10 
>PRK13560 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=440.35  Aligned_cols=661  Identities=15%  Similarity=0.157  Sum_probs=431.3

Q ss_pred             HHHHHHH-HHHHHCCCCEEEEE--CCC--CCCCEEECCCHHHCCCCCC----HHHHHHHHHCCCHHHHHH-------HHH
Q ss_conf             9999999-99860699789998--179--9700141341232189832----023444321189467898-------999
Q gi|255764476|r   66 CDQLSKY-HSLLTENNCLTIVW--DGK--DETPEIIGQLHQRIDIPQT----DTDLLSFENWLKFHHYIK-------LSK  129 (792)
Q Consensus        66 ~~~~~r~-~all~~~~~~~~~w--~~~--~~~~~~~~~~~~~~g~~~~----~~~~l~f~~wl~p~~a~~-------l~~  129 (792)
                      +...+.+ +-+..+-|..++-+  ++.  -..|.++............    +...+  -...+|++...       ..+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  140 (807)
T PRK13560         63 QDCREQCERNLKANIPGGMFLFALDGDGTFSFPSLLDANGELAAIAKHDLMADKGLL--AMLIGGDDGDFFFANPFRSAE  140 (807)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCHHHHHHCHHHHCCCHHHH--HHEECCCCCCEECCCHHHHHH
T ss_conf             999999998787279870799997588740435676523368861804332633256--531154666701234676799


Q ss_pred             HHHH-HHHCC-CEEEEEEECCCCEEEEEEEEEE--CCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999-98539-6589999868972999830455--754899874010689999999999999999999999998516800
Q gi|255764476|r  130 ATEK-LRKEG-QSFDLVAETQNDCAIKIEGRVS--GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL  205 (792)
Q Consensus       130 ai~~-l~~~g-~~f~l~~~t~~g~~i~~~Gr~~--g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~  205 (792)
                      ++++ |+..- +.|+......+|+||.+--|+-  ...-.    -+.|...+|+|.|+.+.+|++++..++.++|++|.|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~DITERKraE~rl~~ql~flq~LlDnipdp  216 (807)
T PRK13560        141 TIAMALQSDDWQEEEGHFRCGDGRFIDCCLRFERHAHADD----QVDGFAEDITERKRAEERIDEALHFLQQLLDNIADP  216 (807)
T ss_pred             HHHHHCCCCCHHHHHCCCCCCCCEEEEECCCHHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9987527886587516666699505663054210897345----555677876777789999999999999998548874


Q ss_pred             EEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHH-H----HHHCCCCC-EEEEEEEEEECCEEEEEEE
Q ss_conf             5898159928985257898736778775661015853389678999-9----86125787-0345788865690789999
Q gi|255764476|r  206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR-M----ISSSALEK-NFCETVSTLEHGNNKSYKI  279 (792)
Q Consensus       206 vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~-~----~~~~~~~~-~~~~~~~~~~~G~rr~~~v  279 (792)
                      ||.+|.+|+|.+||+||++++   |+..++.++.....+.+..... .    ......+. ...+......+|..++.++
T Consensus       217 vF~kD~~G~ylgcN~afe~~~---G~~re~i~G~ti~Dl~p~e~ad~y~~~d~~~l~~~~~~~~E~~v~~~DG~~~~~~v  293 (807)
T PRK13560        217 AFWKDEDAKVFGCNDAACLAC---GFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQNKDGRTRPVDV  293 (807)
T ss_pred             EEEECCCCCEEEECHHHHHHC---CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEE
T ss_conf             699779951896209999880---99999956861012781556899987508864188755755203779985757999


Q ss_pred             E--EEECC------CCEEEEEEEHHHHHHHHHHHHHHHH----HHHHCCCCEEEECCCCEEEEE-CHHHHHHHCCCHHHH
Q ss_conf             9--76328------9529998304589998878899999----984308959998489808985-368885509997896
Q gi|255764476|r  280 V--RVLNS------FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH-NRSFVELWEIDLAFL  346 (792)
Q Consensus       280 ~--~~~~~------~G~~Gia~DITErk~ae~aLrr~~e----~Ld~l~~~v~ifd~~~rl~~~-N~a~~~l~gl~~~~l  346 (792)
                      +  ..|..      .|.+|+..||||||++|++|+.+++    .+++++.+|.++|+++++.|+ |++..+|+|++.+.+
T Consensus       294 ~~nka~~~d~~g~~~GlvGv~~DITeRK~aEe~LresEer~R~i~E~a~~gI~~~D~~g~i~~~~n~aae~m~G~s~eE~  373 (807)
T PRK13560        294 IFNHAEFDDKENHCAGLVGAITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAERMLGWSAAEV  373 (807)
T ss_pred             EEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHCCCHHHH
T ss_conf             98622333878866568888761567788999999989999999873665347862676157612616787626876886


Q ss_pred             HCCCCHH---HHHHHHHHCCCCCCCCCHHHHH-------------HHHHHHHHCCCCCCEEEECCCCCEEEEEEEECC--
Q ss_conf             0499879---9999897547776646578899-------------999987624676502688789818999973569--
Q gi|255764476|r  347 ATNPSND---ELLEFLRSANKLPEQLNWKTWK-------------ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--  408 (792)
Q Consensus       347 ~~~p~~~---~~ld~lr~~~~lpe~~d~~~w~-------------~~~~~~~~~~~~~~~~w~l~DGr~l~v~~~~~p--  408 (792)
                      .+.|-+.   +..+.+       -..+|+.|.             .......+.....+..++.+||..+.+...+.|  
T Consensus       374 lg~~lw~~~pe~~~e~-------~~~~~~~~~pdgr~~~~~~c~~a~~~r~g~~~~g~E~~~~RkDGt~~~~~~~~~pL~  446 (807)
T PRK13560        374 MGKPLPGMDPELNEEF-------WCGDFQEWYPDGRPMAFDACPMAKTIKGGKIFDGQEVLIEREDDGPADCSAYAEPLH  446 (807)
T ss_pred             CCCCCCCCCHHHHHHH-------CCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCEEEE
T ss_conf             0774335683441333-------134065516665634310123667761378778863799906996577886130225


Q ss_pred             --CC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCEEEEECHHHHHHHCCCHHHHCCCC-CHH
Q ss_conf             --98---68999459579999999999999999999962034328996-898488640588878289878943898-388
Q gi|255764476|r  409 --RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGT-HIR  481 (792)
Q Consensus       409 --~G---g~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~-~dgr~~~~N~a~~~l~g~~~~~l~~~~-~~~  481 (792)
                        +|   |.+.++.||||||+.|+.++.+    +..+++.+..+..+. ..|....+|....++|||+++++..+. .+.
T Consensus       447 D~dG~~~gal~i~~DITERKqAEeaLr~s----n~iLEnSp~il~~~~~~~gw~ve~vs~~v~~fGYt~eE~isg~~~~~  522 (807)
T PRK13560        447 DADGNIIGAIALLVDITERKQVEEQLLLA----NLIVENSPLVLFRWKAEEGWPVELVSKNITQFGYEPDEFISGKRMFA  522 (807)
T ss_pred             CCCCCEEEEEEHHHCCHHHHHHHHHHHHH----HHHHHCCCCEEEEEECCCCCCEEEECCHHHHHCCCHHHHCCCCEEHH
T ss_conf             67888533110011242778899999998----88875297404787515786237523214550888788424231012


Q ss_pred             HHHH-HHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEECCCC--CE---EEECCCCHHHHHHHH
Q ss_conf             9887-7763025611468899874026544311568999725038--88999970588--76---631232068999988
Q gi|255764476|r  482 NIAA-TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNA--QT---MLTFVNVTDSVRAER  553 (792)
Q Consensus       482 ~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~pl~dg--~~---l~~~~DIT~~k~~E~  553 (792)
                      .+.. .+.     ...+..+...+ .....+...+.++.++||++  ++..+.|..|.  .+   ..+..|||++|++|+
T Consensus       523 ~lvhPeDr-----~~v~~~l~~~~-~~G~~~f~~eyRi~~kdGsvrWI~~~~~~irDe~G~V~~~~giv~DIT~~k~aee  596 (807)
T PRK13560        523 AIIHPADL-----EQVAAEVAEFA-AQGVDRFEQEYRILGKGGAVCWIDDQSAAERDEEGQISHFEGIVIDISERKHAEE  596 (807)
T ss_pred             CCCCHHHH-----HHHHHHHHHHH-CCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHH
T ss_conf             05797888-----88999999874-1575522016888769996899970135611788875444446743528888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_conf             889999999999999999999966663225899999999973577788998999999999999999999--999999998
Q gi|255764476|r  554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN--LVNDILDLA  631 (792)
Q Consensus       554 aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~--li~diLdls  631 (792)
                      +|+       ++...|.-++.-|.|-.+|.|..|.++..|-....   -++..+   +....+..|+..  +|.+.|  .
T Consensus       597 ~l~-------asL~EKE~LLkEIHHRVKNNLQiIsSLL~LQar~~---~d~ear---~aL~esq~RI~SmAlVHe~L--y  661 (807)
T PRK13560        597 KIK-------AALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKL---HDEEAK---CAFAESQDRICAMALAHEKL--Y  661 (807)
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHH---HHHHHHHHHHHHHHHHHHHH--H
T ss_conf             999-------99998899999877675203999999999887655---999999---99999999999999999998--5


Q ss_pred             HHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHC--CCEEEEEECCCCCEEEEC-HHHHHHHHHHHHHHHHHCCCC---C
Q ss_conf             8514983000233069999999999999999848--968999956986089987-899999999998867753888---6
Q gi|255764476|r  632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGSFVAD-RQRLLQIFSKILSNAMDFSSK---G  705 (792)
Q Consensus       632 ~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~--~i~l~~~~~~~~~~v~~D-~~rL~QVl~NLl~NAik~~~~---g  705 (792)
                      +      .-+...||+.+.+.+....+.......  .|.+.+++++  ..+..| +.-|.-|+.+|++||+||+-+   .
T Consensus       662 ~------S~dl~~Id~~~yi~~L~~~L~~s~~~~~~~I~l~vd~d~--~~L~~d~AiPLgLIlnELVtNAlKHAF~~~~~  733 (807)
T PRK13560        662 Q------SEDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADD--GCLDIDKAIPCGLIISELLSNALKHAFPDGAA  733 (807)
T ss_pred             C------CCCCCEECHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC--CEECHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             6------999765729999999999999973789863899997367--05658887679999999999989860899998


Q ss_pred             CEEEEEEEEEC-CEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf             88999999879-98999999788978977865414883762689888856637999999999619869999788994399
Q gi|255764476|r  706 STVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI  784 (792)
Q Consensus       706 g~I~i~~~~~~-~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf  784 (792)
                      |.|+|+..+.+ +.+.++|+|||+|||++     |++-         .+.+|||.||+.+|+.-+|+|.++|.  .||+|
T Consensus       734 G~I~Isl~~~~~~~v~L~V~DnG~GlP~~-----fd~~---------~s~sLGL~LV~~Lv~QL~G~l~i~s~--~Gt~f  797 (807)
T PRK13560        734 GNIKVEIREQGDGMVNLCVADDGIGLPAG-----FDFR---------AAETLGLQLVCALVKQLDGEIALDSR--GGARF  797 (807)
T ss_pred             CEEEEEEEECCCCEEEEEEEECCCCCCCC-----CCCC---------CCCCCHHHHHHHHHHHCCCEEEEECC--CCEEE
T ss_conf             27999999867998999998798158999-----8978---------89997699999999974989999859--98699


Q ss_pred             EEEEECC
Q ss_conf             9997347
Q gi|255764476|r  785 NCRIPSK  791 (792)
Q Consensus       785 ~v~lP~~  791 (792)
                      +++||..
T Consensus       798 ~I~FPl~  804 (807)
T PRK13560        798 NIRFPMS  804 (807)
T ss_pred             EEEEECC
T ss_conf             9997189


No 11 
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00  E-value=0  Score=476.00  Aligned_cols=304  Identities=18%  Similarity=0.321  Sum_probs=252.2

Q ss_pred             ECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCE
Q ss_conf             40588878289878943898388988777630256114688998740265443115689997250388899997058876
Q gi|255764476|r  459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT  538 (792)
Q Consensus       459 ~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~~~~~~~~pl~dg~~  538 (792)
                      .-|+..++...+...+.|...++.+..|. |      .|...... .+......         .+ .        .+.+.
T Consensus        68 a~p~l~k~~p~p~q~lag~~~~~~l~~w~-p------rw~~~~~~-~~~~~~~~---------~~-~--------~~~~~  121 (378)
T PRK09303         68 ATPALIKISPEPRQVLAGSNIFQQLKNWW-P------RWQQEGAT-SGLGLSLR---------PS-E--------SDVGR  121 (378)
T ss_pred             CCCHHHHCCCCCHHHCCCCCHHHHHHHHH-H------HHHHHHHH-HCCCCCCC---------CC-C--------CCHHH
T ss_conf             36135640898343206886889988762-7------88888876-32478877---------76-5--------53556


Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             63123206899998888999999999999999999996666322589999999997357778899899999999999999
Q gi|255764476|r  539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST  618 (792)
Q Consensus       539 l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~  618 (792)
                      -..+.++.|.+-   .|++.||+|.++.++|++|+++||||||||||+|+||+++|.....++.++++.+++..+...+.
T Consensus       122 ~~~~~~l~d~~~---~Lrqe~E~L~e~~r~K~~Fla~vSHELRTPLTaI~g~~e~L~~~~~~~~~~~~~~~l~~l~~~~~  198 (378)
T PRK09303        122 TQELLQLSDELF---VLRQENETLLEQLKFKDRLLAMLAHDLRTPLTAASLAVETLELGQIDPSEELSPALIEQLQDQAR  198 (378)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             599998788999---99998999999999999999973676153199999999998642579741667999999999999


Q ss_pred             H----HHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHH
Q ss_conf             9----999999999998851498300023306999999999999999984896899995698608998789999999999
Q gi|255764476|r  619 I----LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI  694 (792)
Q Consensus       619 ~----l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NL  694 (792)
                      +    |..||+|+||++++++|.++++++++|+.+++.+++..+++.+..+++++.+++++++|.|.+|+.+|+|||.||
T Consensus       199 ~~~~~L~~LI~DLLd~sr~e~g~l~l~~~~~dL~~lv~evi~~~~~~a~~k~i~l~~dip~dlp~V~aD~~rL~QVl~NL  278 (378)
T PRK09303        199 RQLEEIERLITDLLEVGRTRWEALQFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQRRIRQVLLNL  278 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHHHHHHH
T ss_conf             99999999999999998875388631468876999999999998989983897899976899972876899999999999


Q ss_pred             HHHHHHCCCCCCEEEEEE-EEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             886775388868899999-9879989999997889789778654148837626898888566379999999996198699
Q gi|255764476|r  695 LSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS  773 (792)
Q Consensus       695 l~NAik~~~~gg~I~i~~-~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~  773 (792)
                      |+||+||+|+||+|+|++ .+.++.+.|+|+|||+|||++.+++||+||++.+.+.+.+||||||||||+||++|||+||
T Consensus       279 L~NAiKyT~~gG~I~I~~~~~~~~~V~isV~DtG~GIp~e~~~rIFe~F~R~~~s~~~~GtGLGLaIvk~IVe~HgG~I~  358 (378)
T PRK09303        279 LDNAIKYTPEGGTITLTMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVEVHYGQIW  358 (378)
T ss_pred             HHHHHHHCCCCCEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCEEHHHHHHHHHHHHCCCEEE
T ss_conf             99999858999869999998139989999998078889899987563634456899988312799999999998799799


Q ss_pred             EEEECCCCEEEEEEEECC
Q ss_conf             997889943999997347
Q gi|255764476|r  774 ISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       774 v~S~~G~Gttf~v~lP~~  791 (792)
                      |+|+||+||||+|+||.-
T Consensus       359 V~S~~g~GS~Ft~tLPv~  376 (378)
T PRK09303        359 VDSEPGQGSCFHFTLPVY  376 (378)
T ss_pred             EEECCCCCEEEEEEEECC
T ss_conf             994399835999998247


No 12 
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00  E-value=0  Score=481.32  Aligned_cols=233  Identities=28%  Similarity=0.476  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999999966663225899999999973577788998999999999999999999999999998851
Q gi|255764476|r  555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD  634 (792)
Q Consensus       555 L~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~  634 (792)
                      |..+++++++|+|.|++|++|||||||||||+|+||+++|...   ++++.|++|++.|.+++++|+.||||||||||+|
T Consensus       279 l~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~---~l~~~q~~~l~~i~~s~~~Ll~lIndiLD~SkiE  355 (920)
T PRK11107        279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT---PLTPTQRDYLQTIERSANNLLAIINDILDFSKLE  355 (920)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999966486542199999999998569---9999999999999999999999999999999984


Q ss_pred             CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             498300023306999999999999999984896899995698608-9987899999999998867753888688999999
Q gi|255764476|r  635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA  713 (792)
Q Consensus       635 aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~  713 (792)
                      +|+++++..|||+.+++++++..+.+.+..|++.|.+++++++|. +.||+.||+|||.||++||+|||+.|. |.+++.
T Consensus       356 ag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKfT~~G~-I~v~v~  434 (920)
T PRK11107        356 AGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGN-IDILVE  434 (920)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCC-EEEEEE
T ss_conf             5983674016789999999999999999973987999978999730653899999999999999997188993-799999


Q ss_pred             EE--C-C--EEEEEEEECCCCCCHHHHHHHCCCCEECCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf             87--9-9--8999999788978977865414883762689--88885663799999999961986999978899439999
Q gi|255764476|r  714 RD--N-G--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC  786 (792)
Q Consensus       714 ~~--~-~--~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~--~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v  786 (792)
                      ..  . +  .+.|+|+|||+|||++.+++||+||++.+.+  ++++||||||+|||++|++|||+|+|+|++|+||||+|
T Consensus       435 ~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v~S~~g~GS~F~F  514 (920)
T PRK11107        435 LRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF  514 (920)
T ss_pred             EEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEE
T ss_conf             99647984899999999705869999997854201567654456798774299999999980991799954899748999


Q ss_pred             EEECC
Q ss_conf             97347
Q gi|255764476|r  787 RIPSK  791 (792)
Q Consensus       787 ~lP~~  791 (792)
                      ++|..
T Consensus       515 tlpl~  519 (920)
T PRK11107        515 HLPLD  519 (920)
T ss_pred             EEECC
T ss_conf             99804


No 13 
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=100.00  E-value=0  Score=429.15  Aligned_cols=327  Identities=20%  Similarity=0.330  Sum_probs=260.1

Q ss_pred             HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             99999620343289968984886405888782898789438983889887776302561146889987402654431156
Q gi|255764476|r  436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ  515 (792)
Q Consensus       436 q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~  515 (792)
                      |...||++++||.+++.+|++.++|+++++++|++.+++.+++ +.++....    ..  ....+...+..... .....
T Consensus         9 ~~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~-~~~l~~~~----~~--~~~~~~~~~~~~~~-~~~~~   80 (348)
T PRK11073          9 AGQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTP-LPELLSYF----SL--NIELMQESLQAGQG-FTDNE   80 (348)
T ss_pred             HHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCC-HHHHHCCC----CC--CHHHHHHHHHCCCC-CCCCE
T ss_conf             9999986607964998979701283999999785989985996-89984665----30--18999999973897-41323


Q ss_pred             EEEEECCEE--EEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899972503--888999970588766312320689999888899999999999999999999666632258999999999
Q gi|255764476|r  516 GTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL  593 (792)
Q Consensus       516 ~~~~~~dG~--~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~l  593 (792)
                      ..+ ..||.  ++.+...|+.++..++.+.|||++|+.++++.+.++.     ..+.+|++++||||||||++|.|++++
T Consensus        81 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~di~~~k~l~~e~~~~~~~-----~~~~e~~~~iaHelrnPL~~I~g~~~l  154 (348)
T PRK11073         81 VTL-VIDGRSHILSLTAQRLPEGMILLEMAPMDNQRRLSQEQLQHAQQ-----VAARDLVRGLAHEIKNPLGGLRGAAQL  154 (348)
T ss_pred             EEE-EECCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             999-98996999999999825868999999627999999999999999-----999999984018747857999999999


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             73577788998999999999999999999999999998851498300023306999999999999999984896899995
Q gi|255764476|r  594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS  673 (792)
Q Consensus       594 L~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~  673 (792)
                      |....   -++...+|++.|.++++++.++|+++|++++...      ..+.++..+++++..++.... .+++.+..+.
T Consensus       155 l~~~~---~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~~i~i~~~~  224 (348)
T PRK11073        155 LSKAL---PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HITESIHKVAERVVQLVSLEL-PDNVRLIRDY  224 (348)
T ss_pred             HHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEE
T ss_conf             97417---9989999999999999999999999864412688------775479999999999999856-5780999960


Q ss_pred             CCCCCEEEECHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEEC----------CEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf             6986089987899999999998867753-888688999999879----------98999999788978977865414883
Q gi|255764476|r  674 DGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDN----------GDFIFSVKNNGSSIPEDMCKSVFNRF  742 (792)
Q Consensus       674 ~~~~~~v~~D~~rL~QVl~NLl~NAik~-~~~gg~I~i~~~~~~----------~~v~i~V~D~G~GI~~e~~~riF~~F  742 (792)
                      ++.+|.+.+|+.+|+|||.|||+||+|| ++.+|.|.+.+....          ..+.|+|+|||+||||+.+++||+||
T Consensus       225 ~~~~~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~pf  304 (348)
T PRK11073        225 DPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPM  304 (348)
T ss_pred             CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCC
T ss_conf             78887264468788999999999999983669977999996433322145323304899999908878989999737783


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             7626898888566379999999996198699997889943999997347
Q gi|255764476|r  743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       743 ~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      ++++.    .||||||+|||+||+.|||+|+|+|.||+ |+|+++||.+
T Consensus       305 ~ttk~----~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl~  348 (348)
T PRK11073        305 VSGRE----GGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR  348 (348)
T ss_pred             CCCCC----CCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEEC
T ss_conf             67998----98177899999999986998999982891-9999999639


No 14 
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00  E-value=0  Score=437.98  Aligned_cols=231  Identities=21%  Similarity=0.404  Sum_probs=213.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999999666632258999999999735777889989999999999999999999999999988514983
Q gi|255764476|r  559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM  638 (792)
Q Consensus       559 ~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~  638 (792)
                      .+.+.+.+|+|+.|++.||||||||||+|+|++++|..... ..+++..+++..|.+.+.+|.+||+|+||+||+++|.+
T Consensus       654 a~~~aE~ErLRsalLssVSHDLRTPLtsI~G~a~~L~~~~~-~~~~~~~~~~~~I~~e~~rL~rLV~nLLdmsRle~G~l  732 (895)
T PRK10490        654 ARLASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLA-SEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGF  732 (895)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             88877777899999986034357869999999999854777-88288999999999999999999999999987636997


Q ss_pred             CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE
Q ss_conf             00023306999999999999999984896899995698608998789999999999886775388868899999987998
Q gi|255764476|r  639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD  718 (792)
Q Consensus       639 ~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~  718 (792)
                      .++.+++++.+++.+++..+++.+..+.|+  +++++++|.+.+|+.+|.|||.|||.||+||+|+|+.|.|++...++.
T Consensus       733 ~l~~~~~~l~evv~~al~~~~~~~~~~~i~--v~~~~~~~~v~~D~~lleQVL~NLl~NAiKytp~~~~I~v~a~~~~~~  810 (895)
T PRK10490        733 NLKKEWLTLEEVVGSALQMLEPGLSQHPIN--LSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGEN  810 (895)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCEE--EEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE
T ss_conf             664642069999999999998661269679--995698706987899999999999999998589997099999997999


Q ss_pred             EEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf             99999978897897786541488376268988885663799999999961986999978899439999973479
Q gi|255764476|r  719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       719 v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e  792 (792)
                      +.|+|+|+|+|||++.+++||++|++....+..+|+||||||||+||+.|||+|+++|.||+||+|+|+||.++
T Consensus       811 v~i~V~D~G~GIp~~~~~~IFe~F~R~~~~~~~~GtGLGLaI~k~IveAhGG~I~~~s~~ggGa~F~~~LPl~~  884 (895)
T PRK10490        811 LQLDVWDNGPGIPPGQEQLIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAENRPEGGACFRVTLPQEK  884 (895)
T ss_pred             EEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf             99999980898797999975568712899999997447899999999987998999956998069999832999


No 15 
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00  E-value=0  Score=418.59  Aligned_cols=234  Identities=21%  Similarity=0.387  Sum_probs=214.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             32068999988889999999999999999999966663225899999999973577788998999999999999999999
Q gi|255764476|r  543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN  622 (792)
Q Consensus       543 ~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~  622 (792)
                      +++++++++|++|+. +|+|.+..    +++++|||||||||++|.||+++|.+..  +.+++.++|++.|.+.++|+..
T Consensus       217 ~~~~~R~~Lq~el~r-~EKLAaLG----~LAAgVAHEIRNPLtsI~G~AqlL~~~~--~~~~e~~e~~~iI~~E~~RL~~  289 (455)
T PRK10364        217 RYLRSRQLLQDEMKR-KEKLVALG----HLAAGVAHEIRNPLSSIKGLAKYFAERA--PAGGEAHQLAQVMAKEADRLNR  289 (455)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHH
T ss_conf             778999999999999-98999999----9999989988564999999999986769--9985799999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999885149830002330699999999999999998489689999569860899878999999999988677538
Q gi|255764476|r  623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS  702 (792)
Q Consensus       623 li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~  702 (792)
                      +|+++|+|++..    +++.+++|+++++++++.+++..+..++|.+.++.++++|.+.+|+.+|.|||.||+.||++++
T Consensus       290 iI~~LL~faRp~----~~~~~~vdL~~li~~~l~l~~~~a~~k~I~l~~~~~~~lp~I~~D~~~L~QVl~NLl~NAi~A~  365 (455)
T PRK10364        290 VVSELLELVKPT----HLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAI  365 (455)
T ss_pred             HHHHHHHHHCCC----CCCCCEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHC
T ss_conf             999999872899----8988488499999999999986886489099997388887598889999999999999999975


Q ss_pred             CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf             88688999999879989999997889789778654148837626898888566379999999996198699997889943
Q gi|255764476|r  703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT  782 (792)
Q Consensus       703 ~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gt  782 (792)
                      ++||+|+|++...++.+.|+|+|||+|||+|.+++|||||||+|.    .|||||||||++||+.|||+|+++|.+|+||
T Consensus       366 ~~gg~I~I~~~~~~~~V~I~V~DnG~GIp~E~l~rIFePFfTTK~----~GTGLGLaIv~~IVe~HgG~I~v~S~~G~GT  441 (455)
T PRK10364        366 GQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA----EGTGLGLAVVHNIVEQHGGTIQVASQEGKGA  441 (455)
T ss_pred             CCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEEECCCCCE
T ss_conf             899779999998599899999976999797898786589764898----9702889999999998899799995599987


Q ss_pred             EEEEEEECC
Q ss_conf             999997347
Q gi|255764476|r  783 TINCRIPSK  791 (792)
Q Consensus       783 tf~v~lP~~  791 (792)
                      +|+++||..
T Consensus       442 ~FtI~LPl~  450 (455)
T PRK10364        442 TFTLWLPVN  450 (455)
T ss_pred             EEEEEEECC
T ss_conf             999998278


No 16 
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00  E-value=0  Score=417.96  Aligned_cols=238  Identities=17%  Similarity=0.302  Sum_probs=207.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3206899998888999999999999999--99999666632258999999999735777889989999999999999999
Q gi|255764476|r  543 VNVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL  620 (792)
Q Consensus       543 ~DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l  620 (792)
                      .+.-+++|.|.+=++..+.|++|.||.+  .+.++|+||+||||++|+||++|+....  +.+++.++|++.|.++++|.
T Consensus       425 ~~~~~~~r~etER~~LE~qL~qAQKmEAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l--~~~~~~~~~L~~I~~aa~Ra  502 (831)
T PRK13837        425 CHAIERRRLETERDALERRLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKL--RRHSRARRHIDEIISSGDRA  502 (831)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH
T ss_conf             8799998879999999999999999999999998999987008999999999986206--99847789999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998851498300023306999999999999999984896899995698608998789999999999886775
Q gi|255764476|r  621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD  700 (792)
Q Consensus       621 ~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik  700 (792)
                      ..||++||+|||-    .+.+++++|+++++++++.+++..+ .++|++.++++++++.|.+|+.+|+|||+||+.||.+
T Consensus       503 ~~Lv~qLL~FSR~----~~~~~~~vdl~~lv~e~~~llr~~l-~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~d  577 (831)
T PRK13837        503 RLIIDQILTFGRK----GERRTKPFSLSELVTEIAPLLRVSL-PPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQ  577 (831)
T ss_pred             HHHHHHHHHHHCC----CCCCCCEECHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHH
T ss_conf             9999999998589----9997717749999999999999875-8986999971898853888799999999999999999


Q ss_pred             CCCCCCEEEEEEEE---------------ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             38886889999998---------------799899999978897897786541488376268988885663799999999
Q gi|255764476|r  701 FSSKGSTVILKAAR---------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI  765 (792)
Q Consensus       701 ~~~~gg~I~i~~~~---------------~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iV  765 (792)
                      .+++||+|+|++..               .|++++|+|+|||+|||++.++||||||||||.    +|||||||+|++||
T Consensus       578 AM~~gG~l~I~~~~~~~~~~~~~~~~~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFFTTK~----~GTGLGLAvV~gIV  653 (831)
T PRK13837        578 AMDENGRVDIRLSRVDLRKPKVLAHGTAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFFTTRA----RGTGLGLATVHGIV  653 (831)
T ss_pred             HCCCCCEEEEEEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHH
T ss_conf             76799869999855533632321157789989899999867999898999660489867889----98874699999999


Q ss_pred             HHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             96198699997889943999997347
Q gi|255764476|r  766 NLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       766 e~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      +.|||.|.|+|+||+||+|+|+||..
T Consensus       654 ~~hgG~I~V~S~pG~GTtF~v~LP~~  679 (831)
T PRK13837        654 SAHAGYIDVQSTVGRGTRFDVYLPPS  679 (831)
T ss_pred             HHCCCEEEEECCCCCCEEEEEEEECC
T ss_conf             98698699972699971899983179


No 17 
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=100.00  E-value=0  Score=401.63  Aligned_cols=217  Identities=29%  Similarity=0.488  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
Q ss_conf             99999966663225899999999973577788998999999999999999999999999998851498300023306999
Q gi|255764476|r  570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND  649 (792)
Q Consensus       570 ~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~  649 (792)
                      .+|++++|||||||||+|.|++|+|++..   ..+.+++|++.|.+.++||..||+|+|++++++++...++.+++|+.+
T Consensus       257 e~fva~vSHELRTPLt~I~g~~ElL~~~~---~~e~~~~~l~~I~~e~~RL~~LV~~LL~larle~~~~~~~~~~vdl~~  333 (475)
T PRK11100        257 EQYVQTLTHELKSPLAAIRGAAELLQEDP---PPEDRQRFTGNILAQSARLQQLIDRLLELARLEQRQELEVLEPVALAA  333 (475)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHH
T ss_conf             99998540865117999999999973899---989999999999999999999999999998751588767554875999


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCC
Q ss_conf             99999999999998489689999569860899878999999999988677538886889999998799899999978897
Q gi|255764476|r  650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS  729 (792)
Q Consensus       650 ~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~G  729 (792)
                      ++++++..+++.+..+++++.++.++  ..+.+|+.+|+||+.||+.||+||+|+||+|+|++...++.+.|+|+|+|+|
T Consensus       334 ll~~~~~~~~~~~~~~~i~l~~~~~~--~~v~~D~~~L~qvl~NLl~NAikys~~~g~I~I~~~~~~~~~~i~V~D~G~G  411 (475)
T PRK11100        334 LLEELVEAREAQAAAKGITLRLRPDD--AAVLGDPFLLRQALGNLLDNAIDFTPEGGTITLSAERDGEQVALSVEDSGPG  411 (475)
T ss_pred             HHHHHHHHHHHHHHHCCEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCC
T ss_conf             99999999999998689299995787--6697089999999999999999738999779999999699999999984888


Q ss_pred             CCHHHHHHHCCCCEECCC-CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             897786541488376268-98888566379999999996198699997889943999997347
Q gi|255764476|r  730 IPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       730 I~~e~~~riF~~F~~~~~-~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      ||++.+++||||||+.+. .+++.|+||||||||.||++|||+|+|+|.+|+||+|+++||..
T Consensus       412 Ip~e~l~~IFerFys~~r~~~~~~GsGLGLsIvk~Iv~~HgG~I~v~s~~~~Gt~f~i~LP~~  474 (475)
T PRK11100        412 IPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH  474 (475)
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCC
T ss_conf             788999886167803777999988630799999999998599899996699807999993899


No 18 
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00  E-value=0  Score=398.00  Aligned_cols=229  Identities=20%  Similarity=0.406  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999999666632258999999999735777889989999999999999999999999999988514983
Q gi|255764476|r  559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM  638 (792)
Q Consensus       559 ~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~  638 (792)
                      .+.|+...+++.+|++++|||||||||.|.|++++|.+..    .+...+++..|.....+|..+|+|++++++.+.|.+
T Consensus       231 a~~Le~~~~~rr~f~a~iSHELRTPLt~i~g~le~l~d~~----~~~~~e~l~~i~~e~~rl~~Lv~dLl~ls~~~~~~~  306 (467)
T PRK10549        231 ASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGV----RKFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGAL  306 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999999888875158999999999987165----545799999999999999999999999987545675


Q ss_pred             CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE
Q ss_conf             00023306999999999999999984896899995698608998789999999999886775388868899999987998
Q gi|255764476|r  639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD  718 (792)
Q Consensus       639 ~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~  718 (792)
                      .++.+++|+.+++++++..+++.+..+++++.+++++.+ .+.+|+.+|.|||.||++||+||+++||.|.|++...++.
T Consensus       307 ~~~~~~vdl~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~-~v~~D~~~L~qvl~NLl~NAikyt~~~g~I~I~~~~~~~~  385 (467)
T PRK10549        307 AYQKTPVDLVPLLEVAGGAFRERFASRGLTLQFSLPDSA-TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQHDKT  385 (467)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE
T ss_conf             446733338999999999999999845958999759884-6997799999999999999998489998799999997999


Q ss_pred             EEEEEEECCCCCCHHHHHHHCCCCEECCCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf             99999978897897786541488376268988--885663799999999961986999978899439999973479
Q gi|255764476|r  719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       719 v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~--~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e  792 (792)
                      +.|+|+|+|+|||++.+++|||||++.+.+..  .+|+||||||||+||+.|||+|+++|.+|+||+|+++||.++
T Consensus       386 v~i~V~D~G~GI~~e~l~~IFe~Fyr~d~sr~r~~gGsGLGLaIvk~Iv~~HgG~I~v~s~~~~G~~f~i~LPl~~  461 (467)
T PRK10549        386 LRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER  461 (467)
T ss_pred             EEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCC
T ss_conf             9999998188879899998668987388888899996128999999999983998999967998579999952799


No 19 
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00  E-value=0  Score=385.76  Aligned_cols=229  Identities=21%  Similarity=0.344  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999999666632258999999999735777889989999999999999999999999999988514983
Q gi|255764476|r  559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM  638 (792)
Q Consensus       559 ~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~  638 (792)
                      .+.|+.+.+.+.+|++++|||||||||+|.|+++++....  ...+...+++..+.+..+||.++|+++|++||.+.+..
T Consensus       252 ~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~--~~~~~~~~~l~~~~~e~~rl~~lv~~lL~lar~e~~~~  329 (482)
T PRK09835        252 IERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQS--RSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQL  329 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999999988987189999999999985389--98699999999999999999999999999877435887


Q ss_pred             CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE
Q ss_conf             00023306999999999999999984896899995698608998789999999999886775388868899999987998
Q gi|255764476|r  639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD  718 (792)
Q Consensus       639 ~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~  718 (792)
                      ..+.+++|+.+++.++++.++..+..+++++.+..+  ...|.+|+.+|+|+|.|||+||+||+|+|+.|+|++...++.
T Consensus       330 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~v~~d~~~l~~~l~NLl~NAikys~~g~~i~i~~~~~~~~  407 (482)
T PRK09835        330 IPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVGD--PCQVAGDPLMLRRALSNLLSNALRYTPEGEAIVVRCQTVDHQ  407 (482)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC--CEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE
T ss_conf             666734569999999999999999868928998278--708998799999999999999998489998699999982998


Q ss_pred             EEEEEEECCCCCCHHHHHHHCCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf             9999997889789778654148837626898--8885663799999999961986999978899439999973479
Q gi|255764476|r  719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       719 v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e  792 (792)
                      +.|+|+|+|+|||++.+++|||||++.+.+.  +.+|+||||||||+||++|||+|+|+|. ++||+|+++||.-|
T Consensus       408 v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f~i~lPr~~  482 (482)
T PRK09835        408 VQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVISLPRLE  482 (482)
T ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEEECCC
T ss_conf             9999996587889899987667975189888899994648999999999982998999963-99189999930789


No 20 
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00  E-value=0  Score=391.10  Aligned_cols=349  Identities=21%  Similarity=0.332  Sum_probs=269.9

Q ss_pred             EEEECCHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHC
Q ss_conf             9994595799999999999-999999999620343289968984886405888782898789438983889887776302
Q gi|255764476|r  413 IWMFENLTVQVDLETKYNT-LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY  491 (792)
Q Consensus       413 ~~~~~DITE~~~le~~~~~-l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~  491 (792)
                      .--|.|.|++.+....... .-+.....+-.+.+||.-.+..|++++.|....++.|.+.+.+.+.+..+-+.      .
T Consensus        89 a~~fn~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~------i  162 (459)
T COG5002          89 ADSFNDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSILELLK------I  162 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCCHHHHHC------C
T ss_conf             9999789999999987678888889989998707657645778689935079998486778771653788857------7


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCEEEEEEEECC---EEE--EEEEEEECCCC---CEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             5611468899874026544311568999725---038--88999970588---766312320689999888899999999
Q gi|255764476|r  492 NESDGWDLFAAIITSFDDERKSLQGTLELLS---DSV--LEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNEALR  563 (792)
Q Consensus       492 ~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~d---G~~--~~~~~~pl~dg---~~l~~~~DIT~~k~~E~aL~e~~eale  563 (792)
                      .+..   .+...+..-    .+.  -+...|   +.+  +.++.+.-..|   +.+....|+||+.++|++.|       
T Consensus       163 ~d~y---~~~dL~e~~----~s~--lld~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErR-------  226 (459)
T COG5002         163 EDTY---TFEDLVEKN----DSL--LLDSSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERR-------  226 (459)
T ss_pred             CCCE---EHHHHHHCC----CCE--EEEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHH-------
T ss_conf             5430---288887259----828--986047886379999888885114664406998731438788899999-------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999966663225899999999973577788998999999999999999999999999998851498300023
Q gi|255764476|r  564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS  643 (792)
Q Consensus       564 ~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~  643 (792)
                             +|++|||||||||||+..+|.|-|.++...+. +-...++..-+..++||.+||||+|.+||++.++..|+.+
T Consensus       227 -------efvanvSHElRTPltsmksyLEALe~ga~~d~-eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e  298 (459)
T COG5002         227 -------EFVANVSHELRTPLTSMKSYLEALEEGAWEDK-EIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKE  298 (459)
T ss_pred             -------HHHHHCCHHHCCCHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             -------99886140314736789999999746874471-2326899874788999999999998772576325666578


Q ss_pred             EECHHHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEE
Q ss_conf             3069999999999999999848968-999956986089987899999999998867753888688999999879989999
Q gi|255764476|r  644 TIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS  722 (792)
Q Consensus       644 ~vdl~~~i~~~~~~~~~~~~~~~i~-l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~  722 (792)
                      .+|+...+......+.-.+.+..+. +.-++|...-.+..|+..+-||+.|+++||+||+|+||+|+++....+..+.++
T Consensus       299 ~inft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iS  378 (459)
T COG5002         299 WINFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEIS  378 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEE
T ss_conf             88748899999999999875677889996088886489967068999999998777524899973999996307589999


Q ss_pred             EEECCCCCCHHHHHHHCCCCEECCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             99788978977865414883762689--8888566379999999996198699997889943999997347
Q gi|255764476|r  723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       723 V~D~G~GI~~e~~~riF~~F~~~~~~--~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      |+|.|.|||.+.+++||++|++....  ++.+||||||+|+|.||+.|||.||++|..|+||||+++||.+
T Consensus       379 I~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~  449 (459)
T COG5002         379 ISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYS  449 (459)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCC
T ss_conf             74688899840689999988522366540378776129999999997098577760458861799995466


No 21 
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00  E-value=0  Score=379.62  Aligned_cols=227  Identities=25%  Similarity=0.479  Sum_probs=209.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             9999999999999666632258999999999735777889989-999999999999999999999999988514983000
Q gi|255764476|r  563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN  641 (792)
Q Consensus       563 e~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~-q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~  641 (792)
                      .+.+++++.|++.+|||||||||+|+|.++.|..... .++++ +.+.+..|.+.+++|.++|+|+||++|+++|.+.++
T Consensus       654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~-~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~  732 (890)
T COG2205         654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGE-ALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLK  732 (890)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999987410246728988614888642340-159376999999999999999999998776777713786414


Q ss_pred             EEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEE
Q ss_conf             23306999999999999999984896899995698608998789999999999886775388868899999987998999
Q gi|255764476|r  642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF  721 (792)
Q Consensus       642 ~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i  721 (792)
                      .++..+.+++.+++..++....++.  +.++++++++.+.+|+.-+.|||+|||.||+||+|++++|.|.+.+..+.++|
T Consensus       733 ~~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~  810 (890)
T COG2205         733 LDWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERENVVF  810 (890)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCE--EEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEE
T ss_conf             4520399999999998663047835--89955888716764788999999999987874289997699999982456999


Q ss_pred             EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf             99978897897786541488376268988885663799999999961986999978899439999973479
Q gi|255764476|r  722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e  792 (792)
                      +|.|+|+|||++.+++|||+|++....+...|+|||||||++||+.|||+|++++.++.|++|+++||..+
T Consensus       811 ~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~  881 (890)
T COG2205         811 SVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEE  881 (890)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf             99718999885678876465414888778887662299999999974886898776999358999940688


No 22 
>PRK10337 sensor protein QseC; Provisional
Probab=100.00  E-value=0  Score=365.88  Aligned_cols=222  Identities=23%  Similarity=0.295  Sum_probs=197.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999999996666322589999999997357778899899999999999999999999999999885149830
Q gi|255764476|r  560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK  639 (792)
Q Consensus       560 eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~  639 (792)
                      +.++++-.....|++++|||||||||+|.|++|++....  +..+..++++..|.++.+++..+|+++|.|||+|++...
T Consensus       225 ~rl~~~~~~~r~F~adaAHELRTPLt~i~~~~e~~~~~~--~~~~~~~~~l~~i~~~~~rl~~lv~~LL~Lar~d~~~~~  302 (446)
T PRK10337        225 ARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSD--DDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNL  302 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999999788875168999999999984279--998999999999999999999999999998775446565


Q ss_pred             CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEE
Q ss_conf             00233069999999999999999848968999956986089987899999999998867753888688999999879989
Q gi|255764476|r  640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF  719 (792)
Q Consensus       640 l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v  719 (792)
                      ...++||+.+++.+++..+.+.+..+++++.+++++..+.+.+|+..|+|++.||++||+||+|+|+.|.|+....    
T Consensus       303 ~~~~~v~l~~l~~~~v~~~~~~a~~~~i~l~~~~~~~~~~~~~d~~ll~~~l~NLl~NAikytp~g~~I~v~~~~~----  378 (446)
T PRK10337        303 QDVAEIPLEDLLQSAVMDIYHTAQQAKIDVRLTLNAHGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNAR----  378 (446)
T ss_pred             CCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC----
T ss_conf             6781752999999999999999997597799962887706716899999999999999997489997699999807----


Q ss_pred             EEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             999997889789778654148837626898888566379999999996198699997889943999997
Q gi|255764476|r  720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI  788 (792)
Q Consensus       720 ~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~l  788 (792)
                      .++|+|+|||||++.++||||||++.. ..+..|+|||||||++|+++|||+|+++|.|+.|++|+|+|
T Consensus       379 ~l~V~D~G~GIp~e~~~~iFeRFyR~~-~~~~~GsGLGLaIV~~I~~~hgG~i~l~~~~~GG~~~~vt~  446 (446)
T PRK10337        379 NFTVRDNGPGVTPEALARIGERFYRPP-GQTATGSGLGLSIVQRIAKLHGMNVSFGNAEEGGFEAKVSW  446 (446)
T ss_pred             EEEEEECCCCCCHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEC
T ss_conf             799997699999999987427970699-99999826749999999998199899997898927999969


No 23 
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=100.00  E-value=0  Score=360.32  Aligned_cols=233  Identities=25%  Similarity=0.340  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99888899999999999999999999666632258999999999735777889989999999999999999999999999
Q gi|255764476|r  550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD  629 (792)
Q Consensus       550 ~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLd  629 (792)
                      +..+++-.-.+.|+++.+.+.+|++++|||||||||.|.++++++.... ++     .++++.|.+.+++|..+|+++|+
T Consensus       224 ~La~~fN~M~~~L~~~~~~q~~f~advSHELRTPLt~i~~~~~ll~~~~-~~-----~~~l~~i~~e~~rl~~li~~lL~  297 (461)
T PRK09470        224 AAGASFNQMVTALERMMSSQQRLLSDISHELRTPLTRLQLATALLRRRQ-GE-----SKELERIETEAQRLDSMINDLLV  297 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999998645553278999999999864044-78-----59999999999999999999999


Q ss_pred             HHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             98851498300023306999999999999999984896899995698608998789999999999886775388868899
Q gi|255764476|r  630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI  709 (792)
Q Consensus       630 ls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~  709 (792)
                      |||.+.+. .+..+++|+.++++++++..+..+..+++.+.+..+++...|.+|+.+|.||+.||+.||+||++.  .|+
T Consensus       298 lsr~~~~~-~~~~e~~~l~~l~~~v~~~~~~~a~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~NAikys~~--~i~  374 (461)
T PRK09470        298 LSRNQVKN-HLVRETIKANSLWSEVLEDAAFEAEQMGKSLTVNQPPGPWPINGNPNALESALENIVRNALRYSHT--KIE  374 (461)
T ss_pred             HHHHCCCC-CCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCC--CEE
T ss_conf             97620546-555651539999999999999999975976999727875489978999999999999999974899--589


Q ss_pred             EEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             9999879989999997889789778654148837626898--88856637999999999619869999788994399999
Q gi|255764476|r  710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR  787 (792)
Q Consensus       710 i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~  787 (792)
                      |++...++.+.|+|+|+|+|||++.+++||+||++.+.+.  +.+|+||||||||++|+.|||+|+++|.++.||+|+++
T Consensus       375 v~~~~~~~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~~~~i~  454 (461)
T PRK09470        375 VGFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIW  454 (461)
T ss_pred             EEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEE
T ss_conf             99999999999999977999899999876279722898888999971388999999999829989999779985699999


Q ss_pred             EECC
Q ss_conf             7347
Q gi|255764476|r  788 IPSK  791 (792)
Q Consensus       788 lP~~  791 (792)
                      ||.-
T Consensus       455 LPl~  458 (461)
T PRK09470        455 LPLY  458 (461)
T ss_pred             EECC
T ss_conf             6588


No 24 
>PRK10604 sensor protein RstB; Provisional
Probab=100.00  E-value=0  Score=356.51  Aligned_cols=220  Identities=22%  Similarity=0.297  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999999996666322589999999997357778899899999999999999999999999999885149830
Q gi|255764476|r  560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK  639 (792)
Q Consensus       560 eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~  639 (792)
                      +.+++..+.+.+|+++||||||||||.|.+..+|+....     +...   ..+.+...+|..||+++|++||++.+..+
T Consensus       203 ~~l~~~~~~~r~f~a~vSHELRTPLt~i~~~lell~~~~-----~~e~---~~l~~~i~~l~~lv~~lL~larl~~~~~~  274 (433)
T PRK10604        203 DNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS-----AAES---QALNRDIGQLEALIEELLTYARLDRPQNE  274 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCC-----HHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999987402443168999999999704998-----5789---99999999999999999999763689787


Q ss_pred             CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEE
Q ss_conf             00233069999999999999999848968999956986089987899999999998867753888688999999879989
Q gi|255764476|r  640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF  719 (792)
Q Consensus       640 l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v  719 (792)
                      ++.+++|+.+++.++++.++.....+++.+.  .+.....+.+|+.+|+|++.||+.||+||+  ++.|.|++...++.+
T Consensus       275 l~~~~~dl~~~i~~~~~~~~~~~~~~~i~l~--~~~~~~~~~~D~~~l~~~l~NLl~NA~kys--~~~v~v~~~~~~~~~  350 (433)
T PRK10604        275 LHLSEPDLPAWLSTHLADIQAVTPEKTVRLK--TPHQGDYGALDMRLMERVLDNLLNNALRYS--HSTVETSLLLDGDQA  350 (433)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--CCCCCCEEEECHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCEE
T ss_conf             8770236999999999999976559967997--179886698789999999999999998718--997899999999999


Q ss_pred             EEEEEECCCCCCHHHHHHHCCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             999997889789778654148837626898--888566379999999996198699997889943999997347
Q gi|255764476|r  720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       720 ~i~V~D~G~GI~~e~~~riF~~F~~~~~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      .|+|+|+|+|||++.+++||+||++.+++.  +.+|+||||||||+||+.|||+|+|+|.+|+||+|+++||.-
T Consensus       351 ~i~V~D~G~GI~~e~~~~IFepFyR~d~sr~~~~gG~GLGLaIvk~Iv~~hgG~i~v~s~~~gGa~f~i~LP~~  424 (433)
T PRK10604        351 TLIVEDDGPGIAPEERERIFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDTSELGGARFSFSWPVW  424 (433)
T ss_pred             EEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCC
T ss_conf             99999778788989999865794528888899999613889999999998199899996699847999997799


No 25 
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=100.00  E-value=0  Score=355.13  Aligned_cols=227  Identities=23%  Similarity=0.348  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88899999999999999999999666632258999999999735777889989999999999999999999999999988
Q gi|255764476|r  553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT  632 (792)
Q Consensus       553 ~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~  632 (792)
                      +++-+-.+.|+.+.+.+.+|++++|||||||||+|.|++|+|.....        .+...+.+..+++..+|+++|++++
T Consensus       127 ~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~--------~~~~~~~~~i~rl~~li~~LL~Lar  198 (355)
T PRK10755        127 SALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHH--------IDVAPLIARLDQMMHSVSQLLQLAR  198 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999997577740389999999999737575--------3199999999999999999999985


Q ss_pred             HHCCCCCCEEEEEC-HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             51498300023306-99999999999999998489689999569860899878999999999988677538886889999
Q gi|255764476|r  633 VDAGIMKLNYSTIV-LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK  711 (792)
Q Consensus       633 i~aG~~~l~~~~vd-l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~  711 (792)
                      ++.+....+.++++ +.+++....+.+...+..++..+.+..++....|.||+.+|+||+.||++||+||+|+|+.|+|.
T Consensus       199 ~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~g~~I~I~  278 (355)
T PRK10755        199 AGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPEGSNITIK  278 (355)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             88864345442132599999999999999999759959996588771899689999999999999899748999769999


Q ss_pred             EEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC-CCCEEEEEEEEC
Q ss_conf             9987998999999788978977865414883762689888856637999999999619869999788-994399999734
Q gi|255764476|r  712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS  790 (792)
Q Consensus       712 ~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~-G~Gttf~v~lP~  790 (792)
                      .... +.+.++|+|+|+|||++.+++||+||++.+.  +++|+||||||||+||++|||+|+++|+| |.||+|+|+||.
T Consensus       279 l~~~-~~~~i~V~D~G~GI~~e~~~~iFerFyR~d~--~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~ggGt~~~v~LPk  355 (355)
T PRK10755        279 LQED-GGAVMAVEDEGPGIDESKCGELSKAFVRMDS--RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLKK  355 (355)
T ss_pred             EEEC-CCEEEEEEECCCCCCHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf             9977-9889999987999897999885588613899--999875899999999999199899998798987899999479


No 26 
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=100.00  E-value=0  Score=347.76  Aligned_cols=306  Identities=16%  Similarity=0.248  Sum_probs=216.4

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH--HHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             9999999996203432899689848864058887828987--89438983889887776302561146889987402654
Q gi|255764476|r  432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD  509 (792)
Q Consensus       432 l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  509 (792)
                      +.+.+.+.|+++.|||..++.+|++.++|+++.+|++...  +...+.+ +.++.       ...    .+...+.... 
T Consensus       219 l~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~-~~~~~-------~~~----~l~~vl~~~~-  285 (541)
T PRK11086        219 LFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTD-VHSWS-------PVS----RLKEVLRTGT-  285 (541)
T ss_pred             HHHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCC-HHHHC-------CCH----HHHHHHHCCC-
T ss_conf             9999999985300169997589879998499998743358874312551-77727-------545----5999984488-


Q ss_pred             CCCEEEEEEEECCEEEEEEEEEECCC-C---CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43115689997250388899997058-8---7663123206899998888999999999999999999996666322589
Q gi|255764476|r  510 ERKSLQGTLELLSDSVLEYSIIPLPN-A---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT  585 (792)
Q Consensus       510 ~r~~~~~~~~~~dG~~~~~~~~pl~d-g---~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt  585 (792)
                         ....+....+|+.+.....|+.. |   +.+++|+|+||.++++++|..-        +...+++...|||++|||+
T Consensus       286 ---~~~d~e~~~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L~~v--------~~~~e~Lra~sHE~~n~L~  354 (541)
T PRK11086        286 ---PRRDEEININGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRLDGV--------VNYADALRAQSHEFMNKLH  354 (541)
T ss_pred             ---CCCEEEEEECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf             ---53107999899899999777654890689999984427899999999999--------9999998761166640579


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999735777889989999999999999999999999999988514983000233069999999999999999848
Q gi|255764476|r  586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN  665 (792)
Q Consensus       586 ~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~  665 (792)
                      .|.|+.++-+.       ++..+|+   .+-+......++.+++.-+           .    +.+...+..-..++.++
T Consensus       355 ~I~Gll~l~~~-------d~~~~~i---~~~~~~~~~~~~~l~~~i~-----------~----p~la~~Llgk~~~a~E~  409 (541)
T PRK11086        355 VILGLLHLKSY-------DQLEDYI---LKTANNYQEEIGSLLGKIK-----------S----PVIAGFLLGKISRAREL  409 (541)
T ss_pred             HHHHHHHHCHH-------HHHHHHH---HHHHHHHHHHHHHHHHHCC-----------C----HHHHHHHHHHHHHHHHC
T ss_conf             99888864308-------9999999---9999999999999998611-----------6----88899999889999966


Q ss_pred             CCEEEEEECCCCCEEEECHH---HHHHHHHHHHHHHHHCC--CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             96899995698608998789---99999999988677538--88688999999879989999997889789778654148
Q gi|255764476|r  666 NIRIKVISDGKLGSFVADRQ---RLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN  740 (792)
Q Consensus       666 ~i~l~~~~~~~~~~v~~D~~---rL~QVl~NLl~NAik~~--~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~  740 (792)
                      ++.|.++.+..+|.. .|+.   +|.||+.||+.||++++  +++++|.+++...++.+.|+|+|||+||||+.+++||+
T Consensus       410 gi~L~i~~~~~l~~~-~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~~~~~l~i~V~D~G~GI~~e~~~~IFe  488 (541)
T PRK11086        410 GITLIISEDSQLPDS-DDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHYRHGWLHIEVSDDGPGIAPEEIEAIFD  488 (541)
T ss_pred             CCEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC
T ss_conf             985997067767788-8646665799999999999999731689967999999889989999997798859779988717


Q ss_pred             CCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             837626898888566379999999996198699997889943999997347
Q gi|255764476|r  741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       741 ~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      ||||+|    .+|+||||||||++|+.|||+|+|+|++|+||+|+|+||.+
T Consensus       489 rg~StK----~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~  535 (541)
T PRK11086        489 KGYSTK----GSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWD  535 (541)
T ss_pred             CCCCCC----CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCC
T ss_conf             987418----99911039999999998599899996699937999996068


No 27 
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=100.00  E-value=0  Score=342.27  Aligned_cols=227  Identities=21%  Similarity=0.332  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99988889999999999999999999966663225899999999973577788998999999999999999999999999
Q gi|255764476|r  549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL  628 (792)
Q Consensus       549 k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diL  628 (792)
                      .++-++.-+-.+.+++..+.+..|+++||||||||||.|.+++++|...        +....+.|.+..++|..+|+++|
T Consensus       211 ~~l~~aFN~M~~~l~~~~~~r~~~la~vSHeLRTPLT~irl~~e~l~~~--------~~~~~~~i~~~i~~m~~li~~~L  282 (437)
T PRK09467        211 RSVTRAFNQMSAGIKQLEDDRALLMAGVSHDLRTPLTRIRLATEMMSEE--------DGYLAESINKDIEECNAIIEQFI  282 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999753444327899999998746753--------18999999999999999999999


Q ss_pred             HHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             99885149830002330699999999999999998489689999569860899878999999999988677538886889
Q gi|255764476|r  629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV  708 (792)
Q Consensus       629 dls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I  708 (792)
                      |+++.+.   ....+++|+++++++++...    ...+..+.+++++..+.+.+|+.+|+|+|.||+.||+||+  ++.|
T Consensus       283 ~~~r~~~---~~~~~~~dl~~l~~~~~~~~----~~~~~~i~~~~~~~~~~v~~d~~~l~r~l~NLi~NA~ky~--~~~i  353 (437)
T PRK09467        283 DYLRTDQ---EMPMEMADLNALLGEVIAAE----SGYEREIETALYPGPIEVPMNPIAIKRALANLVVNAARYG--NGWI  353 (437)
T ss_pred             HHHHHCC---CCCCCCCCHHHHHHHHHHHH----HCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHCC--CCEE
T ss_conf             9986215---56675115999999999987----5549838996288764898579999999999999887607--9839


Q ss_pred             EEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             99999879989999997889789778654148837626898888566379999999996198699997889943999997
Q gi|255764476|r  709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI  788 (792)
Q Consensus       709 ~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~l  788 (792)
                      .|++...++.+.|+|.|+|+|||++.+++||+||++.+.+.+.+|+||||||||+||+.|||+|.+++.|+.|++|+++|
T Consensus       354 ~V~~~~~~~~~~i~V~D~GpGI~~e~l~~if~pF~R~d~sR~~~GsGLGLaIv~~Iv~~HgG~i~l~~~~~gGl~~~i~l  433 (437)
T PRK09467        354 KVSSGTEGNRAWFQVEDNGPGIPEEQIKHLFQPFTRGDSARGSSGTGLGLAIVKRIVDQHQGKVELGNREEGGLSARAWL  433 (437)
T ss_pred             EEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEE
T ss_conf             99999868999999997599999899987616852188899999772889999999998699899997799945999997


Q ss_pred             ECCC
Q ss_conf             3479
Q gi|255764476|r  789 PSKE  792 (792)
Q Consensus       789 P~~e  792 (792)
                      |.+.
T Consensus       434 Pl~~  437 (437)
T PRK09467        434 PLPV  437 (437)
T ss_pred             CCCC
T ss_conf             1579


No 28 
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00  E-value=0  Score=340.64  Aligned_cols=221  Identities=17%  Similarity=0.271  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             99999999999999666632258999999999735777889989999999999999999999999999988514983000
Q gi|255764476|r  562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN  641 (792)
Q Consensus       562 le~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~  641 (792)
                      ++.+-....+|++++||||||||+.|.|++++|..+.   .+..+.  ...+.+..+||..+|+++|++++++++...+.
T Consensus       259 l~~~~~rqr~F~adaSHELRTPLa~l~~~le~L~~~~---~~~~~~--~~~~le~i~Rl~~li~~lL~~a~~~~~~~~~~  333 (484)
T PRK10815        259 ERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRTEK---MSVSDA--EPVMLEQISRISQQIGYYLHRASMRGEGTLLS  333 (484)
T ss_pred             HHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCC---CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999985443643456999999999974699---887899--99999999999999999999987038986302


Q ss_pred             EEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEE
Q ss_conf             23306999999999999999984896899995698608998789999999999886775388868899999987998999
Q gi|255764476|r  642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF  721 (792)
Q Consensus       642 ~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i  721 (792)
                      .+.+++..+++++...+...+..+++.+.+++++++ .+.||+..|.|++.||+.||+||++++  |.|++...++.+.+
T Consensus       334 ~e~~~l~~ll~~l~~~l~~~~~~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldNAikys~~~--v~I~~~~~~~~~~I  410 (484)
T PRK10815        334 RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDNACKYCLEF--VEISARQTDEHLHI  410 (484)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCEEEE
T ss_conf             555669999999999999999964977999648760-795578999999999999999728886--79999996999999


Q ss_pred             EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf             99978897897786541488376268988885663799999999961986999978899439999973479
Q gi|255764476|r  722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e  792 (792)
                      +|+|+|||||++.+++||+||++....  +.|+|||||||+.||+.|||+|+++|.|++||+|+|+||..+
T Consensus       411 ~V~D~GpGIp~e~~~~IFeRF~R~d~~--r~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG~~f~I~F~~~~  479 (484)
T PRK10815        411 VVEDDGPGIPESKRELIFDRGQRVDTL--RPGQGVGLAVAREITEQYEGKIVASESPLGGARMEVIFGRQH  479 (484)
T ss_pred             EEEECCCCCCHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCC
T ss_conf             999739999989998624688779999--998576799999999988998999956999248999973877


No 29 
>TIGR01386 cztS_silS_copS heavy metal sensor kinase; InterPro: IPR006290   Members of this family contain a sensor histidine kinase domain (IPR003661 from INTERPRO) and a domain found in bacterial signal proteins (IPR003660 from INTERPRO). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. ; GO: 0000155 two-component sensor activity, 0016775 phosphotransferase activity nitrogenous group as acceptor, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=100.00  E-value=0  Score=343.40  Aligned_cols=222  Identities=28%  Similarity=0.454  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999996666322589999999997-357778899899999999999---99999999999999988514
Q gi|255764476|r  560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISA---SSTILLNLVNDILDLATVDA  635 (792)
Q Consensus       560 eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL-~~~~~g~l~~~q~e~~~~I~~---s~~~l~~li~diLdls~i~a  635 (792)
                      +.||.+=+--++|-+.++||||||||+.+|-+|.. ..+..      +.||-+.|.+   .=+||.++|+|+|=|+|.|.
T Consensus       252 ~RLEd~f~rLs~FSaDlAHElRTPltNL~~~tQVaLS~~R~------~~eY~e~l~snlEEl~RL~rMv~DMLFLAraD~  325 (483)
T TIGR01386       252 DRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSRPRS------GEEYREVLESNLEELERLSRMVEDMLFLARADN  325 (483)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHEEECCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999997317145666401254456650020056889------889999998618999999999989998998523


Q ss_pred             CCCCCEEEEECHHHHHH-HHHHHHHHHHHHCC--CEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             98300023306999999-99999999998489--6899995698608998789999999999886775388868899999
Q gi|255764476|r  636 GIMKLNYSTIVLNDLLN-EVKQSIATKMHENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA  712 (792)
Q Consensus       636 G~~~l~~~~vdl~~~i~-~~~~~~~~~~~~~~--i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~  712 (792)
                      |.+.++++.+||.+=++ .+.+.+.+.+.+++  +.|.+.-  .++.+.||+.-++.+|.|||+||++|||+||.|+|++
T Consensus       326 ~~~~~~~~~ldL~ae~~l~~~~~fE~lAee~~Piv~l~v~G--~P~~~~gD~~lfrRA~sNLLsNA~rhtp~g~~I~v~~  403 (483)
T TIGR01386       326 GRLALEREELDLAAELALKVAEYFEPLAEERGPIVSLRVEG--EPAEVRGDALLFRRALSNLLSNALRHTPAGSTIDVRV  403 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC--CCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             45677787512788887888877420276788668999832--4205602478889999999999986089988589999


Q ss_pred             EEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC--C-CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf             987998999999788978977865414883762689--8-8885663799999999961986999978899439999973
Q gi|255764476|r  713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP  789 (792)
Q Consensus       713 ~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~--~-~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP  789 (792)
                      .+..+.+.++|+|+|+||||+.++||||+||+.+..  . ...||||||||||+||+.|||++.|+|.+++-|+|.+.||
T Consensus       404 ~~~~d~~~~~v~N~G~~Ip~e~L~rLFdRFYR~D~aR~~G~~~g~GLGLAIV~SI~~~HGG~~~aeS~~~~~t~F~l~fp  483 (483)
T TIGR01386       404 ERRADEVRVSVENTGDGIPPEHLSRLFDRFYRVDPARSNGSQEGTGLGLAIVRSIMEAHGGRAEAESEADGKTRFKLRFP  483 (483)
T ss_pred             EECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECC
T ss_conf             61477568998358799985235655530026763332766456760489999999823986899864892489876339


No 30 
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=100.00  E-value=4.2e-45  Score=327.00  Aligned_cols=327  Identities=21%  Similarity=0.361  Sum_probs=257.1

Q ss_pred             HHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             99996203432899689848864058887828987894389838898877763025611468899874026544311568
Q gi|255764476|r  437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG  516 (792)
Q Consensus       437 ~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~  516 (792)
                      ...||++..+|.+.+.+|++.|.|++++.+++.+...|.+.+ +..+...-.++..--   ........++.+.      
T Consensus        10 ~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~-l~~l~~~gs~ll~ll---~q~~~~~~~~~~~------   79 (363)
T COG3852          10 GAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTR-LSELLPFGSLLLSLL---DQVLERGQPVTEY------   79 (363)
T ss_pred             HHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCC-HHHHCCCCCHHHHHH---HHHHHHCCCCCCC------
T ss_conf             768745578569982778289608889999997788882487-788717772889999---8999835885101------


Q ss_pred             EEEE-CCE--EEEEEEEEECC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9997-250--38889999705--887663123206899998888999999999999999999996666322589999999
Q gi|255764476|r  517 TLEL-LSD--SVLEYSIIPLP--NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT  591 (792)
Q Consensus       517 ~~~~-~dG--~~~~~~~~pl~--dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a  591 (792)
                      ++.. .+|  .++++...|++  +|..++.|.-+....+..+++.++     .+.+.....+.+.+|||+|||.+|.|-+
T Consensus        80 ~v~l~~~g~~~~v~~~v~~v~~~~G~vlle~~~~~~~~ridre~~q~-----a~~~a~~~L~r~LAHEIKNPL~GiRGAA  154 (363)
T COG3852          80 EVTLVILGRSHIVDLTVAPVPEEPGSVLLEFHPRDMQRRLDREQTQH-----AQQRAVKGLVRGLAHEIKNPLGGIRGAA  154 (363)
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             02442078652378998622689974899953257776766999988-----8888999999877887228531014499


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             99735777889989999999999999999999999999988514983000233069999999999999999848968999
Q gi|255764476|r  592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV  671 (792)
Q Consensus       592 ~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~  671 (792)
                      |||+...-   ++..++|.+.|.+.++|+.+||+.+.-|+-    ..+.+..|+++..+++.+..++..-+ ..+|++.-
T Consensus       155 QLLe~~lp---d~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~VLerV~~lv~~e~-~~~i~l~r  226 (363)
T COG3852         155 QLLERALP---DEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHEVLERVRALVEAEF-ADNVRLIR  226 (363)
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEE
T ss_conf             99974589---867789999999999999999999875087----89855354319999999999985436-77558850


Q ss_pred             EECCCCCEEEECHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEE----------ECCEEEEEEEECCCCCCHHHHHH
Q ss_conf             95698608998789999999999886775388----86889999998----------79989999997889789778654
Q gi|255764476|r  672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS----KGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMCKS  737 (792)
Q Consensus       672 ~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~----~gg~I~i~~~~----------~~~~v~i~V~D~G~GI~~e~~~r  737 (792)
                      +++|++|.+.+|+.||.|||.||+.||+....    .+|+|.++.+-          .--.+.+.|.|||||||++.+++
T Consensus       227 dYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~  306 (363)
T COG3852         227 DYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDH  306 (363)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCCCEEEEEEEEEEECCCCCCCHHHHHH
T ss_conf             27998853236989999999999999999716778778569997224258871674246631169861899998678643


Q ss_pred             HCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             148837626898888566379999999996198699997889943999997347
Q gi|255764476|r  738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       738 iF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      +|.||.|+    +..||||||+|+..||..|||.|+++|.||+ |+|.+.+|..
T Consensus       307 lF~P~Vs~----r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~  355 (363)
T COG3852         307 LFYPMVSG----REGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIR  355 (363)
T ss_pred             CCCCCCCC----CCCCCCCCHHHHHHHHHHCCCEEEEECCCCC-EEEEEEEECC
T ss_conf             00230206----8898661489999989852978987426894-5899986335


No 31 
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00  E-value=1.4e-45  Score=328.96  Aligned_cols=239  Identities=20%  Similarity=0.382  Sum_probs=219.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             206899998888999999999999999--9999966663225899999999----9735777889989999999999999
Q gi|255764476|r  544 NVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTD----LLKTSKLGSLNSKQSQYVEYISASS  617 (792)
Q Consensus       544 DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~G~a~----lL~~~~~g~l~~~q~e~~~~I~~s~  617 (792)
                      .|.++.+.|.+|+...+.|-+|+|+.-  ++.+.+|||||+||++|..|++    ||+.+.    .+..++.+..|..-.
T Consensus       357 EIaer~~ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr----~e~a~~Nl~~I~~Lt  432 (603)
T COG4191         357 EIAEREQAEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARLLLERGR----TEEARENLERISALT  432 (603)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHH
T ss_conf             9998887899999878999987778998888888788743708999867778999987588----677776799999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             99999999999998851498300023306999999999999999984896899995698608998789999999999886
Q gi|255764476|r  618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN  697 (792)
Q Consensus       618 ~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~N  697 (792)
                      +||..|..++-.|++-..+    ..+++.+.++|++++.++.++++..++++..+.++..+.|.+++.||+|||.|||+|
T Consensus       433 eRma~It~~Lk~FArk~~~----a~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~N  508 (603)
T COG4191         433 ERMAAITAHLKSFARKSRD----AAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQN  508 (603)
T ss_pred             HHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHHH
T ss_conf             9998899999998336766----667765799999999998876413676265048987755641322099999999998


Q ss_pred             HHHCC--CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             77538--8868899999987998999999788978977865414883762689888856637999999999619869999
Q gi|255764476|r  698 AMDFS--SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS  775 (792)
Q Consensus       698 Aik~~--~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~  775 (792)
                      |++.+  ++.+.|.|.+.++++.++++|+||||||+||.+.++|+||||+|+.++  |.||||+||+.|++.+||++.|.
T Consensus       509 ALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~--GLGLGLaIS~~i~~d~GGsL~v~  586 (603)
T COG4191         509 ALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGK--GLGLGLAISQNIARDLGGSLEVA  586 (603)
T ss_pred             HHHHHCCCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHCCEEEEE
T ss_conf             9998458878716999871598699998269999897899861377503676667--75602898998999818807940


Q ss_pred             EECCCCEEEEEEEECCC
Q ss_conf             78899439999973479
Q gi|255764476|r  776 SSDEGVTTINCRIPSKE  792 (792)
Q Consensus       776 S~~G~Gttf~v~lP~~e  792 (792)
                      +.|+.||.|++.||..+
T Consensus       587 n~~~~Ga~F~i~L~~a~  603 (603)
T COG4191         587 NHPEGGASFTIELRRAA  603 (603)
T ss_pred             CCCCCCEEEEEEEECCC
T ss_conf             27888448999961579


No 32 
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285   NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=100.00  E-value=5.6e-45  Score=326.03  Aligned_cols=465  Identities=17%  Similarity=0.252  Sum_probs=323.9

Q ss_pred             HHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCC-----CHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             9999998516800589815992898525789873677877566101585338-----96789999861257870345788
Q gi|255764476|r  193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVS  267 (792)
Q Consensus       193 ~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll-----~~~~~~~~~~~~~~~~~~~~~~~  267 (792)
                      +.||..+|.+|..|-+.|.+-+|+|+|.||.+.+   ||..++.+|++-..+     ++...+..|...+...||.+.+-
T Consensus         4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iT---GY~~eE~iGkNES~LSn~tTPpeVYQaLWg~la~qkPW~G~Ll   80 (496)
T TIGR02938         4 ELYRQTVDQAPVAISITDLKANILYANDAFSEIT---GYAKEEVIGKNESVLSNRTTPPEVYQALWGSLAEQKPWAGKLL   80 (496)
T ss_pred             HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             5688866228803643101456999956632155---8656211125540126858871799999988630589865100


Q ss_pred             E-EECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHHH----HHHHCCCCEEEECCCCEEEEECHHHH
Q ss_conf             8-656907899999763289--5----29998304589998878899999----98430895999848980898536888
Q gi|255764476|r  268 T-LEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV  336 (792)
Q Consensus       268 ~-~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~e----~Ld~l~~~v~ifd~~~rl~~~N~a~~  336 (792)
                      . ..||+++.-+++-.|+-+  |    ..|+.+||||.-..|+..+.++-    .++..|.+.++.|+++|++.-|+.||
T Consensus        81 NRrkDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~yk  160 (496)
T TIGR02938        81 NRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEYK  160 (496)
T ss_pred             CCCCCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHH
T ss_conf             00116530022202020001468815873254543578899888976467899998786541000569986881677688


Q ss_pred             HHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEE
Q ss_conf             55099978960499879999989754777664657889999998762467650268878981899997356998689994
Q gi|255764476|r  337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF  416 (792)
Q Consensus       337 ~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~~~~w~l~DGr~l~v~~~~~p~Gg~~~~~  416 (792)
                      +|-   .+.-...|++ .+++-||+.           |.+.          .++.|+.  +..++               
T Consensus       161 ~La---~DL~v~epa~-~~l~lLre~-----------~~e~----------~~~~~~q--~~afs---------------  198 (496)
T TIGR02938       161 KLA---SDLKVEEPAE-LLLKLLREE-----------LAED----------LEELENQ--EKAFS---------------  198 (496)
T ss_pred             HHH---HHCCCCCCHH-HHHHHHHHH-----------HHHH----------HHHHCCC--CCEEC---------------
T ss_conf             787---4214144179-999985087-----------6527----------8652021--10101---------------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCC-CCHHHHHHHHHHHCCCCH
Q ss_conf             5957999999999999999999996203432899689848864058887828987894389-838898877763025611
Q gi|255764476|r  417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESD  495 (792)
Q Consensus       417 ~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~-~~~~~~~~~~~~~~~~~~  495 (792)
                       +      .|                     +-||.-                     .|+ ++|               
T Consensus       199 -n------~E---------------------~rfD~g---------------------gGR~~RW---------------  214 (496)
T TIGR02938       199 -N------KE---------------------LRFDRG---------------------GGRSARW---------------  214 (496)
T ss_pred             -C------CE---------------------EEEECC---------------------CCCCCCC---------------
T ss_conf             -5------40---------------------354168---------------------8788501---------------


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEE-EECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHH-HHH----HHHHHHH
Q ss_conf             46889987402654431156899-97250388899997058876631232068999988889999-999----9999999
Q gi|255764476|r  496 GWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EAL----RKADEIK  569 (792)
Q Consensus       496 ~~~~~~~~i~~~~~~r~~~~~~~-~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~-eal----e~a~~lk  569 (792)
                                      .+..++. ...++. .+....|-..+.-|+|+.|||+.|+-.+.-|-+. +||    |...-+|
T Consensus       215 ----------------lSc~g~~i~~e~~~-ad~fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~r  277 (496)
T TIGR02938       215 ----------------LSCAGRVIRIEEDS-ADSFFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALR  277 (496)
T ss_pred             ----------------EEECCCEEEEECCC-CCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ----------------02023235311364-0115616899830566364788899999999999899998998888876


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHH
Q ss_conf             999999666632258999999999735777-8899899999999999999999999999999885149830002330699
Q gi|255764476|r  570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN  648 (792)
Q Consensus       570 ~~F~~~vSHELrtPLt~I~G~a~lL~~~~~-g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~  648 (792)
                      ..|-+ .=|.|.-|||-|..-..+|....- ..-|+.-...+..+.+++..-+.-      |++.---.+.-...||||+
T Consensus       278 Etl~A-AIhrl~gP~NlisaA~~~L~RRlGD~AGn~a~~~~lqqa~~ag~e~~e~------L~~~IP~s~~e~~~pVNlN  350 (496)
T TIGR02938       278 ETLSA-AIHRLQGPLNLISAAISVLERRLGDDAGNDAVAALLQQALAAGREALEA------LEKVIPQSDAEAVVPVNLN  350 (496)
T ss_pred             HHHHH-HHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCCCCCCCCCCCCCHH
T ss_conf             66888-8888528710788999986320583237979999999998863999997------5057887724454664277


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCC----EEEEEEEEECCEEEEEEE
Q ss_conf             9999999999999984896899995698608998789999999999886775388868----899999987998999999
Q gi|255764476|r  649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVK  724 (792)
Q Consensus       649 ~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg----~I~i~~~~~~~~v~i~V~  724 (792)
                      .++++++++.-+++-..||-++....+.||.|.|-+.+++..|=.|+.|||..|...+    ...|..+-.++-|.++|.
T Consensus       351 ~~lrdvi~l~T~rLLA~GIvVdW~Pa~~LP~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t~~~~~li~~~i~  430 (496)
T TIGR02938       351 QVLRDVITLLTERLLAAGIVVDWQPAAVLPAVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILTAVEDDLIRVEIE  430 (496)
T ss_pred             HHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf             89999998610557557541516561016222078525789999999999998530784102310102230856899997


Q ss_pred             ECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             788978977865414883762689888856637999999999619869999788994399999734
Q gi|255764476|r  725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       725 D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                      |+|||||++..-++||||||+|.+..+.|.|+||+.++.||..|+|-|.|+..+-+|.+.++.||.
T Consensus       431 DsGPGIP~dlr~kvFEPFFttK~~~Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~~  496 (496)
T TIGR02938       431 DSGPGIPADLRLKVFEPFFTTKASSGRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFEV  496 (496)
T ss_pred             ECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC
T ss_conf             358798724422523673226888778423346268899975049879736888777357776239


No 33 
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00  E-value=2.8e-45  Score=327.70  Aligned_cols=233  Identities=21%  Similarity=0.422  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88999999999999999999996666322589999999997357778899899999999999999999999999999885
Q gi|255764476|r  554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV  633 (792)
Q Consensus       554 aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i  633 (792)
                      +|.+-+.+||++|..-..|.+.+||+|++||+.|.+|+++|...+-+.+++++++|+..|...+.++.+||+|++.+|++
T Consensus       509 ela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l  588 (750)
T COG4251         509 ELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKL  588 (750)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99989988765158999999986104667999999999766634366657588999999999999999999977423120


Q ss_pred             HCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC-CEEEEEE
Q ss_conf             149830002330699999999999999998489689999569860899878999999999988677538886-8899999
Q gi|255764476|r  634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKA  712 (792)
Q Consensus       634 ~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~g-g~I~i~~  712 (792)
                      +  ..+...+|.|+..++++++..+..+..+.++.+.+  ++ +|.+.+|+.++.||+.||+.||+||..++ ..|.|++
T Consensus       589 ~--~~~~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~  663 (750)
T COG4251         589 G--LTEAPLQPTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISA  663 (750)
T ss_pred             C--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEE--CC-CCEEECCHHHHHHHHHHHHHHHEECCCCCCCCEEEEE
T ss_conf             5--54577777526789999997345311256524786--25-6446408889999999987655210788898158853


Q ss_pred             EEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             9879989999997889789778654148837626898888566379999999996198699997889943999997347
Q gi|255764476|r  713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       713 ~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      .+.++.++|+|+|||+||+|+..+|||.+|.+.+...++.||||||+|||.|+|.|+|+|||+|.||+|+||.|+||..
T Consensus       664 ~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~  742 (750)
T COG4251         664 ERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVG  742 (750)
T ss_pred             ECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECC
T ss_conf             3258730798547877769899988899887037565514777338999999998484588860478741689984058


No 34 
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=100.00  E-value=2e-41  Score=301.61  Aligned_cols=349  Identities=21%  Similarity=0.305  Sum_probs=257.0

Q ss_pred             CCEEEEECCHHHHHHHHHH-----HHHH---HHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHH
Q ss_conf             8689994595799999999-----9999---9999999962034328996898488640588878289878943898388
Q gi|255764476|r  410 GGTIWMFENLTVQVDLETK-----YNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR  481 (792)
Q Consensus       410 Gg~~~~~~DITE~~~le~~-----~~~l---~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~  481 (792)
                      |-+...|.-+|++++.+++     .+.+   .+.....|+.+..||.+|+.+|++..+||+.++|+|.+-+.+.|.. ..
T Consensus       338 g~Ls~~FN~M~~eL~~qq~~l~~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~-ls  416 (712)
T COG5000         338 GRLSKAFNKMTEQLSSQQEALERAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQS-LS  416 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHH-HH
T ss_conf             89999999999999999999998788899999889999815850389974787077626017888468706764402-66


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC-EEEEEEEEEECC-C--CCEEEECCCCHHHHHHHHHHHH
Q ss_conf             98877763025611468899874026544311568999725-038889999705-8--8766312320689999888899
Q gi|255764476|r  482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLP-N--AQTMLTFVNVTDSVRAERALTE  557 (792)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~d-G~~~~~~~~pl~-d--g~~l~~~~DIT~~k~~E~aL~e  557 (792)
                      .+.......+.....|        +-.+.+..  ..+.+.+ -+.+.......+ |  ++.+++|.|||+-+.+++.-.-
T Consensus       417 a~ap~~~~vf~~~~a~--------~~~~~~~e--v~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQRs~AW  486 (712)
T COG5000         417 AIAPELEEVFAEAGAA--------ARTDKRVE--VKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQRSAAW  486 (712)
T ss_pred             HHHHHHHHHHHHHHHH--------CCCCCCEE--EECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf             4213789999976540--------38774201--0001478741566675321444688569996350899999998789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999966663225899999999973577788998-99--9999999999999999999999998851
Q gi|255764476|r  558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQ--SQYVEYISASSTILLNLVNDILDLATVD  634 (792)
Q Consensus       558 ~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~-~q--~e~~~~I~~s~~~l~~li~diLdls~i~  634 (792)
                                  .+-+-.++||++||||.|.-.+|-|+..+-..+++ ++  ..+.+.|.+..+.+.++|++.-+|+|.-
T Consensus       487 ------------~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP  554 (712)
T COG5000         487 ------------GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP  554 (712)
T ss_pred             ------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ------------99999998872499862200289999883741234899999999999999999999999999871489


Q ss_pred             CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCC-------CCCCE
Q ss_conf             49830002330699999999999999998489689999569860899878999999999988677538-------88688
Q gi|255764476|r  635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-------SKGST  707 (792)
Q Consensus       635 aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~-------~~gg~  707 (792)
                          ++.+++.||++++.+++.+.+  +....|.+..+...++-...+|+..|.|||.||+.||..+.       ++++.
T Consensus       555 ----~p~~e~~dL~~ll~e~~~L~e--~~~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~  628 (712)
T COG5000         555 ----APKLEKSDLRALLKEVSFLYE--IGNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTAL  628 (712)
T ss_pred             ----CCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf             ----987774229999999999996--26877699753189862532489999999999987199875310134677643


Q ss_pred             EEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-CCCCEEEEE
Q ss_conf             9999998799899999978897897786541488376268988885663799999999961986999978-899439999
Q gi|255764476|r  708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC  786 (792)
Q Consensus       708 I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~-~G~Gttf~v  786 (792)
                      |+++....++.+++.|.|||.|.|.+.+.|+||||.|++.    .||||||+|||+|||.|||.+++... .-.|+.+.+
T Consensus       629 i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~----KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i  704 (712)
T COG5000         629 IRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTRE----KGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRI  704 (712)
T ss_pred             EEEEEECCCCEEEEEEECCCCCCCHHHHHHHCCCCEECCC----CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEE
T ss_conf             8999844798499998108987996786432367142165----666623999999999638827724789999767999


Q ss_pred             EEECC
Q ss_conf             97347
Q gi|255764476|r  787 RIPSK  791 (792)
Q Consensus       787 ~lP~~  791 (792)
                      -||.+
T Consensus       705 ~fp~~  709 (712)
T COG5000         705 KFPLK  709 (712)
T ss_pred             ECCCC
T ss_conf             83656


No 35 
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00  E-value=2.9e-35  Score=259.35  Aligned_cols=216  Identities=35%  Similarity=0.581  Sum_probs=191.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEC
Q ss_conf             9999999966663225899999999973577788998999999999999999999999999998851498-300023306
Q gi|255764476|r  568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIV  646 (792)
Q Consensus       568 lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~-~~l~~~~vd  646 (792)
                      .+..|++.++||+|||++.|.++++++...   ..+. +.+++..+..+.+++..++++++++++++.+. ......+++
T Consensus       114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~---~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  189 (336)
T COG0642         114 AKREFLANISHELRTPLTAIRGLLELLLEG---LLDP-QRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVD  189 (336)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             999999999888589799999999997414---6525-999999999999999999999999997644574422346455


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEEC
Q ss_conf             99999999999999998489689999569860899878999999999988677538886889999998799899999978
Q gi|255764476|r  647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN  726 (792)
Q Consensus       647 l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~  726 (792)
                      +..++.++...+...+....+.+....+ ....+.+|+.++.|||.||++||+||++ ++.|.|.+...++.+.++|.|+
T Consensus       190 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~~i~i~V~D~  267 (336)
T COG0642         190 LAELLEEVVRLLAPLAQEKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDEQVTISVEDT  267 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEEEEECC-CCEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEECC
T ss_conf             9999999999999876634848998237-6607860788999999999998998668-9859999996387799999807


Q ss_pred             CCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             89789778654148837626898888566379999999996198699997889943999997347
Q gi|255764476|r  727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       727 G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      |+|||++.++++|+||++++..+.  |+||||+||+++++.|||.+.++|.||.||+|+++||..
T Consensus       268 G~Gi~~~~~~~if~~~~~~~~~~~--g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~  330 (336)
T COG0642         268 GPGIPEEELERIFEPFFRTDKSRS--GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLA  330 (336)
T ss_pred             CCCCCHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECC
T ss_conf             899798899988188634799989--886329999999998799899950799977999998477


No 36 
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase; InterPro: IPR014265   Proteins in this entry are putative periplasmic sensor signal transduction histidine kinases. They all contain a GAF domain that is present in phytochromes and cGMP-specific phosphodiesterases, and which has been experimentally proven to be involved in protein:protein interactions. They also contain a C-terminal histidine kinase domain, which is composed of a dimerisation sub-domain and an ATP/ADP-binding phosphotransfer, or catalytic, sub-domain. The proteins in this entry are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system  common in Gram-positive bacteria, where members of IPR014264 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=100.00  E-value=2.9e-35  Score=259.41  Aligned_cols=225  Identities=21%  Similarity=0.335  Sum_probs=179.4

Q ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6899998888--999999999999999--999996666322589999---999997357778899899999999999999
Q gi|255764476|r  546 TDSVRAERAL--TEKNEALRKADEIKN--SFVQHVSYELRSPLTNII---GFTDLLKTSKLGSLNSKQSQYVEYISASST  618 (792)
Q Consensus       546 T~~k~~E~aL--~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~---G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~  618 (792)
                      |-.|++-..|  .|.+|+|-.|-|..+  .+-+=|=|||+|-.+-..   -+|+--+     +-++=|.+-++.|..+.+
T Consensus       459 t~~rQAASyLa~~~a~e~L~~arqF~~FnR~SaFvVHDLKNLvaQLSL~l~NA~~Hk-----~NPeFq~DmL~Tv~~~v~  533 (696)
T TIGR02916       459 TAGRQAASYLAQMEASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHK-----DNPEFQDDMLETVESAVN  533 (696)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999998888875188034211025899999999999887417-----896689999998999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC-CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEE-CCC--CCEEEECHHHHHHHHHHH
Q ss_conf             99999999999988514983-00023306999999999999999984896899995-698--608998789999999999
Q gi|255764476|r  619 ILLNLVNDILDLATVDAGIM-KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGK--LGSFVADRQRLLQIFSKI  694 (792)
Q Consensus       619 ~l~~li~diLdls~i~aG~~-~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~-~~~--~~~v~~D~~rL~QVl~NL  694 (792)
                      ||..++.++      ..+.. +-+...||+.++++.+.+.-+  ..+..+  ++.+ +.+  + .|.+|+-||+.|+.||
T Consensus       534 RM~~ll~qL------r~~~~p~~~~~~~~l~~L~~~~~~~k~--~q~p~~--e~~~~~~~~rl-~~~a~~erl~rV~gHL  602 (696)
T TIGR02916       534 RMKKLLAQL------REKGLPEEEKKTVDLVDLLRRVIASKR--AQQPRP--EVSIEDTDFRL-SVRADRERLERVLGHL  602 (696)
T ss_pred             HHHHHHHHH------HCCCCCCHHHHEEHHHHHHHHHHHHHH--HCCCCE--EEEECCCCEEE-EEEECHHHHHHHHHHH
T ss_conf             999999997------306897405641038999999999986--318944--89971754178-8875288899999999


Q ss_pred             HHHHHHCCCCCCEEEEEEEEEC-CEEEEEEEECCCCCCHHH-HHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             8867753888688999999879-989999997889789778-65414883762689888856637999999999619869
Q gi|255764476|r  695 LSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDM-CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV  772 (792)
Q Consensus       695 l~NAik~~~~gg~I~i~~~~~~-~~v~i~V~D~G~GI~~e~-~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I  772 (792)
                      +-||+.+||+.|.|.|++.+.+ +.+.|+|.|||+||+++. ++|+|.||.|||..   .|.|+|.+=||++|+.|||+|
T Consensus       603 ~QNAlEAT~~~G~V~~~~~~~~~~~a~i~i~D~G~GM~~~FiR~rLF~PF~tTK~~---aGMGIG~YE~~~yv~e~GG~i  679 (696)
T TIGR02916       603 VQNALEATPEEGRVKIRVERECGGAAVIEIEDSGCGMSEAFIRERLFKPFDTTKGN---AGMGIGVYECRQYVEELGGRI  679 (696)
T ss_pred             HHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC---CCCCCCHHHHHHHHHHHCCCE
T ss_conf             99888604999628999874188822799986578998589984078997544566---787201899999999838905


Q ss_pred             EEEEECCCCEEEEEEEE
Q ss_conf             99978899439999973
Q gi|255764476|r  773 SISSSDEGVTTINCRIP  789 (792)
Q Consensus       773 ~v~S~~G~Gttf~v~lP  789 (792)
                      +|+|.||+||+||+.||
T Consensus       680 ~V~S~pG~Gt~ftl~LP  696 (696)
T TIGR02916       680 EVESTPGKGTIFTLVLP  696 (696)
T ss_pred             EEEEECCCCEEEEEECC
T ss_conf             88863588548887449


No 37 
>PRK09776 putative sensor protein; Provisional
Probab=100.00  E-value=9.1e-32  Score=235.47  Aligned_cols=367  Identities=15%  Similarity=0.080  Sum_probs=240.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHH----HH
Q ss_conf             999999999999999999999998516800589815992898525789873677877566101585-3389678----99
Q gi|255764476|r  176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI----KK  250 (792)
Q Consensus       176 ~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~----~~  250 (792)
                      ......+...+.+.+|+++||+++|.+|.++++.+.||+++.||+++|++.+   |+.++...... ++.++.+    .+
T Consensus       287 ~~~~~~r~~~~~l~~SE~rfR~~~e~saiGmAlV~~dGr~l~VN~alc~mlG---Ys~~ELl~ltf~diThPdDl~~dl~  363 (1116)
T PRK09776        287 MVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLG---YSQEELRGLTFQQLTWPEDLNKDLQ  363 (1116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHC---CCHHHHHHCCHHHHCCCCCHHHHHH
T ss_conf             9999999888887767999999987466646998689818981699998849---8999985298988169621777899


Q ss_pred             HHHHHCCCC--CEEEEEEEEEECCEEEEEEEEEEEC--CCC----EEEEEEEHHHHHHHHHHHHHHHHHH----HHCCCC
Q ss_conf             998612578--7034578886569078999997632--895----2999830458999887889999998----430895
Q gi|255764476|r  251 RMISSSALE--KNFCETVSTLEHGNNKSYKIVRVLN--SFG----EAGIAIDVSKEITVNDQLTHTYEIL----HNLTVA  318 (792)
Q Consensus       251 ~~~~~~~~~--~~~~~~~~~~~~G~rr~~~v~~~~~--~~G----~~Gia~DITErk~ae~aLrr~~e~L----d~l~~~  318 (792)
                      .+.......  ....+.+++..+|+..|..++....  ..|    .+++..||||||++|+++++..+.+    +....|
T Consensus       364 ~~~~LlaGei~~y~lEKRyirkDG~~vW~~ltvSlvRd~~G~p~~fI~~v~DIterK~aE~~lr~l~erl~la~ea~~iG  443 (1116)
T PRK09776        364 QVEKLLSGEINSYSMEKRYYNRDGDVVWALLAVSLVRDTDGTPLYFIAQIEDINELKRTEQVNERLMERITLANEAGGIG  443 (1116)
T ss_pred             HHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999769966454112467369979999989999976999844899999733377999999999999999998624766


Q ss_pred             EEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC--CEEEECCC
Q ss_conf             9998489808985368885509997896049987999998975477766465788999999876246765--02688789
Q gi|255764476|r  319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPN  396 (792)
Q Consensus       319 v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~--~~~w~l~D  396 (792)
                      ++-+|......+||+...+++|++++.   .|......+.+     .|+..  ...............+.  +.-...||
T Consensus       444 iwe~d~~~~~i~~~~r~~~l~g~~~~~---~~~~~~w~~~i-----hPdD~--~~v~~~~~~~l~~~~~~d~E~Rl~~~d  513 (1116)
T PRK09776        444 IWEWDLKPNIISWDKRMFELYEIPPHI---KPNWQVWYACL-----HPEDR--QRVEKEIRDALQGRSPFKLEFRIVVPD  513 (1116)
T ss_pred             EEEEECCCCCEECCHHHHHHHCCCCCC---CCCHHHHHHHC-----CHHHH--HHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             355205665021137899984888222---66889998723-----91568--999999999971588756046788479


Q ss_pred             CCEEEEEE--E--ECCCCC---EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCC
Q ss_conf             81899997--3--569986---8999459579999999999999999999962034328996898488640588878289
Q gi|255764476|r  397 GQTLHVIV--T--SNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT  469 (792)
Q Consensus       397 Gr~l~v~~--~--~~p~Gg---~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~  469 (792)
                      |++.++..  .  .+.+|.   +..+..||||+|++|+++....+..+.+++++.|+|.++|.+|++.+.||++++|+||
T Consensus       514 G~~r~i~~~a~~~~d~~G~~~r~~G~~~DITe~K~~eeaL~e~~erl~~~l~si~d~vi~tD~~~ri~~~Npaae~~tG~  593 (1116)
T PRK09776        514 GEIRHIRALANRVLNKDGEVERLLGINMDMTEVRQLNEALFEEKERLHITLDSIGEAVVCTDAAMKVTFMNPVAEKMTGW  593 (1116)
T ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCC
T ss_conf             97899986214898689988988731323207789999999999999999834022489973788678886999998298


Q ss_pred             CHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEECCC--C---CEEEEC
Q ss_conf             87894389838898877763025611468899874026544311568999725038--8899997058--8---766312
Q gi|255764476|r  470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPN--A---QTMLTF  542 (792)
Q Consensus       470 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~pl~d--g---~~l~~~  542 (792)
                      +.+++.+.|. ..+.....+. .....-....................+..++|..  +..+..|+.|  |   +.+++|
T Consensus       594 ~~~e~~G~~~-~~v~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~G~~~~v~~s~~pi~~~~g~~~g~V~v~  671 (1116)
T PRK09776        594 TQEEALGVPL-LTVLHITFGD-NGPLMENPVEICLADTSRSYLEQDVVLHSRSGGSYDVQYSIAPLSTLDGENIGSVLVF  671 (1116)
T ss_pred             CHHHHCCCCH-HHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf             8799849987-8970036644-2111121999997407873312353688269968999973045134778554479852


Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             320689999888899
Q gi|255764476|r  543 VNVTDSVRAERALTE  557 (792)
Q Consensus       543 ~DIT~~k~~E~aL~e  557 (792)
                      .|||++|++|+.|..
T Consensus       672 ~Dit~~k~~~~~l~~  686 (1116)
T PRK09776        672 QDVTESRAMLRQLSY  686 (1116)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             012299999999987


No 38 
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=100.00  E-value=6.6e-32  Score=236.39  Aligned_cols=310  Identities=17%  Similarity=0.267  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHH--HHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             999999999962034328996898488640588878289878--943898388988777630256114688998740265
Q gi|255764476|r  431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN--RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD  508 (792)
Q Consensus       431 ~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  508 (792)
                      ++.+.+.++|+++.|||...++.|.+.++|.+.++|+|+...  ...+++- .++.   .|...-+    .+       .
T Consensus       212 ~l~~er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i-~~v~---~p~~~l~----~v-------l  276 (537)
T COG3290         212 TLLEERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSI-VEVL---PPDSDLP----EV-------L  276 (537)
T ss_pred             HHHHHHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCC-EEEE---CCCCCCH----HH-------H
T ss_conf             999999999987636289987898576112889998465676756446610-3761---5636757----78-------7


Q ss_pred             CCCCEEEEEEEECCEEEEEEEEEECCCC----CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4431156899972503888999970588----766312320689999888899999999999999999999666632258
Q gi|255764476|r  509 DERKSLQGTLELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL  584 (792)
Q Consensus       509 ~~r~~~~~~~~~~dG~~~~~~~~pl~dg----~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPL  584 (792)
                      +.+++...+.-+.+|+.+-...+|..-|    +.+++|+|-||-++.-++|..-++-.        +-+...+||..|-|
T Consensus       277 ~~~~~~~~~e~~~ng~~~i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~vr~ya--------~aLRaq~HEfmNkL  348 (537)
T COG3290         277 ETGKPQHDEEIRINGRLLVANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQYA--------EALRAQSHEFMNKL  348 (537)
T ss_pred             HCCCCCCCHHHHCCCEEEEEEECCEEECCEEEEEEEEEECHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_conf             5077631134414775999985237888977689998763778999999999899999--------99988528888889


Q ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999973577788998999999999999999999999999998851498300023306999999999999999984
Q gi|255764476|r  585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE  664 (792)
Q Consensus       585 t~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~  664 (792)
                      ++|.|+.+|=.  +     ++..+|+..+.   +.-..+++.+.  .+         ..    ++.+...+-.-..++++
T Consensus       349 htI~GLlql~~--y-----d~a~~~I~~~~---~~qq~~~~~l~--~~---------i~----~~~lAg~LlgK~~rArE  403 (537)
T COG3290         349 HTILGLLQLGE--Y-----DDALDYIQQES---EEQQELIDSLS--EK---------IK----DPVLAGFLLGKISRARE  403 (537)
T ss_pred             HHHHHHHHHCC--H-----HHHHHHHHHHH---HHHHHHHHHHH--HH---------CC----CHHHHHHHHHHHHHHHH
T ss_conf             99987885053--7-----89999999987---64045689999--85---------12----08889998868999997


Q ss_pred             CCCEEEEEECCCCCE--EEECHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHC
Q ss_conf             896899995698608--998789999999999886775388---868899999987998999999788978977865414
Q gi|255764476|r  665 NNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF  739 (792)
Q Consensus       665 ~~i~l~~~~~~~~~~--v~~D~~rL~QVl~NLl~NAik~~~---~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF  739 (792)
                      .|+.|.++....++.  -.-++.-+--++-||+.||....-   +..+|.++....++.+.++|+||||||||+.+++||
T Consensus       404 lgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iF  483 (537)
T COG3290         404 LGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIF  483 (537)
T ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf             29659975798678898766767899999998877888851557896799999836987999995799998968877787


Q ss_pred             CCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             8837626898888566379999999996198699997889943999997347
Q gi|255764476|r  740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       740 ~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      +.=++++..   .|.|.||++||++|+.+||.|+++|+++.||+|++++|-.
T Consensus       484 e~G~Stk~~---~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~  532 (537)
T COG3290         484 EKGVSTKNT---GGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKV  532 (537)
T ss_pred             HCCCCCCCC---CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCC
T ss_conf             348414677---8876128899999987496699950789814999988887


No 39 
>PRK13560 hypothetical protein; Provisional
Probab=100.00  E-value=1.1e-30  Score=228.00  Aligned_cols=501  Identities=12%  Similarity=0.136  Sum_probs=283.4

Q ss_pred             HHHHHHHHHHHH-HHHHHHCCCCEEE--ECCCCCEEE--ECHHHHHHHCCCCCC---HHHH----H-CCCCCCCCHHH-H
Q ss_conf             999999999999-9998516800589--815992898--525789873677877---5661----0-15853389678-9
Q gi|255764476|r  184 KCKKLSNHISVF-KVLFDSLDFLVWH--RDQAGDILW--ANISYKKNTETEGIV---FQKA----I-GESRKLFKEEI-K  249 (792)
Q Consensus       184 ~~~~L~~~~~~l-r~llda~P~~vw~--~D~dGri~~--vN~A~~~~~e~~~~~---~~~~----i-~~~~~ll~~~~-~  249 (792)
                      ++.++++..+.. |.+..++|..++.  .|+||+..|  +..|.....++..+.   ....    + +.+.+.+.... |
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (807)
T PRK13560         58 AEAEAQDCREQCERNLKANIPGGMFLFALDGDGTFSFPSLLDANGELAAIAKHDLMADKGLLAMLIGGDDGDFFFANPFR  137 (807)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCHHHHHHCHHHHCCCHHHHHHEECCCCCCEECCCHHH
T ss_conf             77788999999998787279870799997588740435676523368861804332633256531154666701234676


Q ss_pred             --HHHHHHCCCCCEEEEEEEEEECCEEEEEEEEEEEC--CCC---EEEEEEEHHHHHHHHHHHHHHH----HHHHHCCCC
Q ss_conf             --99986125787034578886569078999997632--895---2999830458999887889999----998430895
Q gi|255764476|r  250 --KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--SFG---EAGIAIDVSKEITVNDQLTHTY----EILHNLTVA  318 (792)
Q Consensus       250 --~~~~~~~~~~~~~~~~~~~~~~G~rr~~~v~~~~~--~~G---~~Gia~DITErk~ae~aLrr~~----e~Ld~l~~~  318 (792)
                        +.+..++ ....|++.......|+.||++....|-  +.|   .-|++.||||||++|++|+.+.    ..+|++|++
T Consensus       138 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~DITERKraE~rl~~ql~flq~LlDnipdp  216 (807)
T PRK13560        138 SAETIAMAL-QSDDWQEEEGHFRCGDGRFIDCCLRFERHAHADDQVDGFAEDITERKRAEERIDEALHFLQQLLDNIADP  216 (807)
T ss_pred             HHHHHHHHC-CCCCHHHHHCCCCCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             799998752-7886587516666699505663054210897345555677876777789999999999999998548874


Q ss_pred             EEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHCCCCC-CEEE-EC
Q ss_conf             999848980898536888550999789604998799999897547776646--5788999999876246765-0268-87
Q gi|255764476|r  319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL--NWKTWKENIFSVYKSSETH-KDTW-HL  394 (792)
Q Consensus       319 v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~--d~~~w~~~~~~~~~~~~~~-~~~w-~l  394 (792)
                      |..-|.++++.+||++|++++|++++.+.+...+..          .|.+.  +|..   ............ .+.| ..
T Consensus       217 vF~kD~~G~ylgcN~afe~~~G~~re~i~G~ti~Dl----------~p~e~ad~y~~---~d~~~l~~~~~~~~E~~v~~  283 (807)
T PRK13560        217 AFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDF----------APAQPADDYQE---ADAAKFDADGSQIIEAEFQN  283 (807)
T ss_pred             EEEECCCCCEEEECHHHHHHCCCCHHHHCCCCCCCC----------CCHHHHHHHHH---HHHHHHCCCCCEEEEEEEEC
T ss_conf             699779951896209999880999999568610127----------81556899987---50886418875575520377


Q ss_pred             CCCCEE--EEEEE--E--CCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE-ECHHHH
Q ss_conf             898189--99973--5--6998---689994595799999999999999999999620343289968984886-405888
Q gi|255764476|r  395 PNGQTL--HVIVT--S--NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL-SNPAFR  464 (792)
Q Consensus       395 ~DGr~l--~v~~~--~--~p~G---g~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~-~N~a~~  464 (792)
                      |||+..  .|..+  |  .+.|   |++.++.||||||++|+.++......+..+++++.+|.+++++|++.+ +||+.+
T Consensus       284 ~DG~~~~~~v~~nka~~~d~~g~~~GlvGv~~DITeRK~aEe~LresEer~R~i~E~a~~gI~~~D~~g~i~~~~n~aae  363 (807)
T PRK13560        284 KDGRTRPVDVIFNHAEFDDKENHCAGLVGAITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAE  363 (807)
T ss_pred             CCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHH
T ss_conf             99857579999862233387886656888876156778899999998999999987366534786267615761261678


Q ss_pred             HHHCCCHHHHCCCCCHHH----HH-HHHHH---HCCCCHH--HHH--HHHHHHCCCCCCCEEEEEEEECCEEEEEEE--E
Q ss_conf             782898789438983889----88-77763---0256114--688--998740265443115689997250388899--9
Q gi|255764476|r  465 SLWKTEENRLSPGTHIRN----IA-ATCSR---YYNESDG--WDL--FAAIITSFDDERKSLQGTLELLSDSVLEYS--I  530 (792)
Q Consensus       465 ~l~g~~~~~l~~~~~~~~----~~-~~~~~---~~~~~~~--~~~--~~~~i~~~~~~r~~~~~~~~~~dG~~~~~~--~  530 (792)
                      +|+||+.+++.+.+-+..    -. -+|..   .+++...  ...  +...+..- ..-...+.+..++||+.+.+.  .
T Consensus       364 ~m~G~s~eE~lg~~lw~~~pe~~~e~~~~~~~~~~pdgr~~~~~~c~~a~~~r~g-~~~~g~E~~~~RkDGt~~~~~~~~  442 (807)
T PRK13560        364 RMLGWSAAEVMGKPLPGMDPELNEEFWCGDFQEWYPDGRPMAFDACPMAKTIKGG-KIFDGQEVLIEREDDGPADCSAYA  442 (807)
T ss_pred             HHHCCCHHHHCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHCC-CCCCCCEEEEEECCCCEEEEEECC
T ss_conf             7626876886077433568344133313406551666563431012366776137-877886379990699657788613


Q ss_pred             EECC--CCC---EEEECCCCHHHHHHHHHHHHHHHHHHHHHH----HH---------------------HHHHH------
Q ss_conf             9705--887---663123206899998888999999999999----99---------------------99999------
Q gi|255764476|r  531 IPLP--NAQ---TMLTFVNVTDSVRAERALTEKNEALRKADE----IK---------------------NSFVQ------  574 (792)
Q Consensus       531 ~pl~--dg~---~l~~~~DIT~~k~~E~aL~e~~eale~a~~----lk---------------------~~F~~------  574 (792)
                      .|+.  ||.   .+.++.|||++|++|++|++.|..++.++-    .|                     .||++      
T Consensus       443 ~pL~D~dG~~~gal~i~~DITERKqAEeaLr~sn~iLEnSp~il~~~~~~~gw~ve~vs~~v~~fGYt~eE~isg~~~~~  522 (807)
T PRK13560        443 EPLHDADGNIIGAIALLVDITERKQVEEQLLLANLIVENSPLVLFRWKAEEGWPVELVSKNITQFGYEPDEFISGKRMFA  522 (807)
T ss_pred             EEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCHHHHHCCCHHHHCCCCEEHH
T ss_conf             02256788853311001124277889999999888875297404787515786237523214550888788424231012


Q ss_pred             -HH-HHHHHHHHHHHHHHHHHHHC--------------------------CCCC----------CCCHHH--HH------
Q ss_conf             -96-66632258999999999735--------------------------7778----------899899--99------
Q gi|255764476|r  575 -HV-SYELRSPLTNIIGFTDLLKT--------------------------SKLG----------SLNSKQ--SQ------  608 (792)
Q Consensus       575 -~v-SHELrtPLt~I~G~a~lL~~--------------------------~~~g----------~l~~~q--~e------  608 (792)
                       .+ ..++++..+.+..+..--.+                          ...|          +.+++.  .+      
T Consensus       523 ~lvhPeDr~~v~~~l~~~~~~G~~~f~~eyRi~~kdGsvrWI~~~~~~irDe~G~V~~~~giv~DIT~~k~aee~l~asL  602 (807)
T PRK13560        523 AIIHPADLEQVAAEVAEFAAQGVDRFEQEYRILGKGGAVCWIDDQSAAERDEEGQISHFEGIVIDISERKHAEEKIKAAL  602 (807)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             05797888889999998741575522016888769996899970135611788875444446743528888999999999


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEC
Q ss_conf             -----999999999999999999999988514983000233069999999999999999848968999956986089987
Q gi|255764476|r  609 -----YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD  683 (792)
Q Consensus       609 -----~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D  683 (792)
                           .+..|.--.+.-+.+|..+|.+..-   ..    ..=+....+.++...+...+.-+.. |  .-.+++..|.  
T Consensus       603 ~EKE~LLkEIHHRVKNNLQiIsSLL~LQar---~~----~d~ear~aL~esq~RI~SmAlVHe~-L--y~S~dl~~Id--  670 (807)
T PRK13560        603 TEKEVLLKEIHHRVKNNLQIISSLLDLQAE---KL----HDEEAKCAFAESQDRICAMALAHEK-L--YQSEDLADID--  670 (807)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC----CCHHHHHHHHHHHHHHHHHHHHHHH-H--HCCCCCCEEC--
T ss_conf             988999998776752039999999998876---55----9999999999999999999999999-8--5699976572--


Q ss_pred             HHHHHHHHHHHHHHHHH-CCCCCCEEEEEEEE
Q ss_conf             89999999999886775-38886889999998
Q gi|255764476|r  684 RQRLLQIFSKILSNAMD-FSSKGSTVILKAAR  714 (792)
Q Consensus       684 ~~rL~QVl~NLl~NAik-~~~~gg~I~i~~~~  714 (792)
                         +.+.+.+|+.+-.. |..+...|.+....
T Consensus       671 ---~~~yi~~L~~~L~~s~~~~~~~I~l~vd~  699 (807)
T PRK13560        671 ---FLDYIESLTAHLKNSFAIDFGRIDCKIDA  699 (807)
T ss_pred             ---HHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             ---99999999999999737898638999973


No 40 
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=100.00  E-value=5.8e-31  Score=229.97  Aligned_cols=239  Identities=18%  Similarity=0.278  Sum_probs=198.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             206899998888999999999999999--9999966663225899999999--973577788998999999999999999
Q gi|255764476|r  544 NVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTD--LLKTSKLGSLNSKQSQYVEYISASSTI  619 (792)
Q Consensus       544 DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~G~a~--lL~~~~~g~l~~~q~e~~~~I~~s~~~  619 (792)
                      .|-+|+++|.+|+.....|-+|.++..  .-+..+||||+.|||+...|.=  -++-+.  .-++...+|+++|..-.+|
T Consensus       424 EveeR~e~ea~L~~~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~--~~s~qa~~~L~kie~L~eR  501 (673)
T COG4192         424 EVEERQEAEAHLKKTQGELIQAAKLAVVGQTMTSLAHEINQPLNAMSAYLFSARLALEE--APSAQAATSLDKIENLTER  501 (673)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998778999999899987788888988557568899999987888851--7458899899988779999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHH
Q ss_conf             99999999999885149830002330699999999999999998489689999569860899878999999999988677
Q gi|255764476|r  620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM  699 (792)
Q Consensus       620 l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAi  699 (792)
                      +..||+.+.-|+|-.++  +-.+.||+|++++..+.+++..+...+.+.|..  |-|.+.|.||..++.|||.||+.||.
T Consensus       502 ~~~Iv~sLRqF~Rk~s~--~~~lqpV~L~~~v~~AweLl~~khk~rQ~~Li~--ptD~~~V~gd~v~ieQVlvNl~~Nal  577 (673)
T COG4192         502 MGKIVNSLRQFARKNSS--DESLQPVRLNSVVEQAWELLQTKHKRRQIKLIN--PTDDLMVMGDAVSIEQVLVNLIVNAL  577 (673)
T ss_pred             HHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCEECCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999752577--787641109999999999998542000244237--76530000015649999999999888


Q ss_pred             HCCCCC-CEEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             538886-889999998-799899999978897897786541488376268988885663799999999961986999978
Q gi|255764476|r  700 DFSSKG-STVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS  777 (792)
Q Consensus       700 k~~~~g-g~I~i~~~~-~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~  777 (792)
                      +.+.-. ..|.+.+.. .++..++.|.|||+|-|-+..+++|.||.+.|..    |.|||||||.+++|.|.|.+.+.|.
T Consensus       578 dA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v----gLGlGLSIsqSlmeqmqG~l~lASt  653 (673)
T COG4192         578 DASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV----GLGLGLSISQSLMEQMQGRLALAST  653 (673)
T ss_pred             HHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf             664157862799864276421589984489998456778860776643100----5553256789999984274448655


Q ss_pred             CCCCEEEEEEEECCC
Q ss_conf             899439999973479
Q gi|255764476|r  778 DEGVTTINCRIPSKE  792 (792)
Q Consensus       778 ~G~Gttf~v~lP~~e  792 (792)
                      ..+|+.++..|-+.|
T Consensus       654 Lt~nA~ViL~f~v~~  668 (673)
T COG4192         654 LTKNAMVILEFQVDE  668 (673)
T ss_pred             CCCCCEEEEEEEECC
T ss_conf             135748999984131


No 41 
>PRK09776 putative sensor protein; Provisional
Probab=99.97  E-value=1.1e-26  Score=200.76  Aligned_cols=368  Identities=13%  Similarity=0.070  Sum_probs=251.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999860699789998179970014134123218983202344432118946789899999999
Q gi|255764476|r   55 VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL  134 (792)
Q Consensus        55 ~~~l~~~~~~l~~~~~r~~all~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l  134 (792)
                      ....|++...+.++..||+..++.++-.+..-+-.+..-++...++..+|+++++..-+.|....||+|...-.+.++.+
T Consensus       289 ~~~~r~~~~~l~~SE~rfR~~~e~saiGmAlV~~dGr~l~VN~alc~mlGYs~~ELl~ltf~diThPdDl~~dl~~~~~L  368 (1116)
T PRK09776        289 MYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKL  368 (1116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHH
T ss_conf             99999888887767999999987466646998689818981699998849899998529898816962177789999999


Q ss_pred             HH-CCCEEEE--EEECCCCEEEEEEEEEECCEEEEEEE-----ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             85-3965899--99868972999830455754899874-----0106899999999999999999999999985168005
Q gi|255764476|r  135 RK-EGQSFDL--VAETQNDCAIKIEGRVSGSCAFLRIL-----SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV  206 (792)
Q Consensus       135 ~~-~g~~f~l--~~~t~~g~~i~~~Gr~~g~~a~~r~~-----d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~v  206 (792)
                      .. +-..|.+  ....+||..+|+.=..    +++|..     -+-++-.|++++|+++.+++++.++++.+.++.+.++
T Consensus       369 laGei~~y~lEKRyirkDG~~vW~~ltv----SlvRd~~G~p~~fI~~v~DIterK~aE~~lr~l~erl~la~ea~~iGi  444 (1116)
T PRK09776        369 LSGEINSYSMEKRYYNRDGDVVWALLAV----SLVRDTDGTPLYFIAQIEDINELKRTEQVNERLMERITLANEAGGIGI  444 (1116)
T ss_pred             HCCCCCCCCCEEEEECCCCCEEEEEEEE----EEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             7699664541124673699799999899----999769998448999997333779999999999999999986247663


Q ss_pred             EEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHH----HHHCCCCCEEEEE-EEEEECCEEEEEEEEE
Q ss_conf             8981599289852578987367787756610158533896789999----8612578703457-8886569078999997
Q gi|255764476|r  207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM----ISSSALEKNFCET-VSTLEHGNNKSYKIVR  281 (792)
Q Consensus       207 w~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~----~~~~~~~~~~~~~-~~~~~~G~rr~~~v~~  281 (792)
                      |..|.....+.+|+...++.+... ........+...+++.++...    ........++.-. +-...+|+.||+....
T Consensus       445 we~d~~~~~i~~~~r~~~l~g~~~-~~~~~~~~w~~~ihPdD~~~v~~~~~~~l~~~~~~d~E~Rl~~~dG~~r~i~~~a  523 (1116)
T PRK09776        445 WEWDLKPNIISWDKRMFELYEIPP-HIKPNWQVWYACLHPEDRQRVEKEIRDALQGRSPFKLEFRIVVPDGEIRHIRALA  523 (1116)
T ss_pred             EEEECCCCCEECCHHHHHHHCCCC-CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEE
T ss_conf             552056650211378999848882-2266889998723915689999999999715887560467884799789998621


Q ss_pred             EEC--CC----CEEEEEEEHHHHHHHHHHHHHHH----HHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCC
Q ss_conf             632--89----52999830458999887889999----998430895999848980898536888550999789604998
Q gi|255764476|r  282 VLN--SF----GEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS  351 (792)
Q Consensus       282 ~~~--~~----G~~Gia~DITErk~ae~aLrr~~----e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~  351 (792)
                      .+.  .+    +.+|+..||||+|+++++|.+..    .++++++++|.++|.++++.|.|++++++.|++.+.+.+.|-
T Consensus       524 ~~~~d~~G~~~r~~G~~~DITe~K~~eeaL~e~~erl~~~l~si~d~vi~tD~~~ri~~~Npaae~~tG~~~~e~~G~~~  603 (1116)
T PRK09776        524 NRVLNKDGEVERLLGINMDMTEVRQLNEALFEEKERLHITLDSIGEAVVCTDAAMKVTFMNPVAEKMTGWTQEEALGVPL  603 (1116)
T ss_pred             EEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCH
T ss_conf             48986899889887313232077899999999999999998340224899737886788869999982988799849987


Q ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECC----CC---CEEEEECCHHHHHH
Q ss_conf             799999897547776646578899999987624676502688789818999973569----98---68999459579999
Q gi|255764476|r  352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG---GTIWMFENLTVQVD  424 (792)
Q Consensus       352 ~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~~~~w~l~DGr~l~v~~~~~p----~G---g~~~~~~DITE~~~  424 (792)
                      . .++.-...... +...+  ..+......-...-....+|+..||+...|..+..|    +|   |.+.+|+||||+|+
T Consensus       604 ~-~v~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~~l~~~~G~~~~v~~s~~pi~~~~g~~~g~V~v~~Dit~~k~  679 (1116)
T PRK09776        604 L-TVLHITFGDNG-PLMEN--PVEICLADTSRSYLEQDVVLHSRSGGSYDVQYSIAPLSTLDGENIGSVLVFQDVTESRA  679 (1116)
T ss_pred             H-HHHHCCCCCCC-HHHHH--HHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCHHHHHH
T ss_conf             8-97003664421-11121--99999740787331235368826996899997304513477855447985201229999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|255764476|r  425 LETKYNT  431 (792)
Q Consensus       425 le~~~~~  431 (792)
                      +|++...
T Consensus       680 ~~~~l~~  686 (1116)
T PRK09776        680 MLRQLSY  686 (1116)
T ss_pred             HHHHHHH
T ss_conf             9999987


No 42 
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.96  E-value=2.6e-28  Score=211.75  Aligned_cols=110  Identities=34%  Similarity=0.645  Sum_probs=103.5

Q ss_pred             ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCC-CCCCCCHHHHH
Q ss_conf             87899999999998867753888688999999879989999997889789778654148837626898-88856637999
Q gi|255764476|r  682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSI  760 (792)
Q Consensus       682 ~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~-~~~GtGLGLsi  760 (792)
                      +|+.+|.|++.||++||+||+++++.|+|++...++.+.|+|+|+|+|||++.++++|+||++.+... ...|+||||+|
T Consensus         1 ~d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i   80 (111)
T smart00387        1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRSRKIGGTGLGLSI   80 (111)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCCCEECCCCCCCCCCCCHHHHH
T ss_conf             98899999999999999996779978999999839999999998899739899964269947779999887976648999


Q ss_pred             HHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             9999996198699997889943999997347
Q gi|255764476|r  761 VESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       761 v~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      |+.++++|||+|+++|.+++||+|+++||.+
T Consensus        81 ~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~~  111 (111)
T smart00387       81 VKKLVELHGGEISVESEPGGGTTFTITLPLE  111 (111)
T ss_pred             HHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf             9999998799899996599818999999819


No 43 
>pfam02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Probab=99.96  E-value=8.1e-28  Score=208.40  Aligned_cols=110  Identities=33%  Similarity=0.610  Sum_probs=103.8

Q ss_pred             ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC-CCCCCCCHHHHH
Q ss_conf             8789999999999886775388868899999987998999999788978977865414883762689-888856637999
Q gi|255764476|r  682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSI  760 (792)
Q Consensus       682 ~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~-~~~~GtGLGLsi  760 (792)
                      +|+.+|.||+.||++||+||+++++.|.|++...++.+.|+|+|+|+|||++.++++|+||++.+.. ....|+||||+|
T Consensus         1 ~d~~~l~~i~~nll~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i   80 (111)
T pfam02518         1 GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERDGGRLRITVEDNGIGIPPEDLPKIFEPFFRTDKDSRKVGGTGLGLSI   80 (111)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCCHHHHH
T ss_conf             98899999999999999997799975999999959999999998999959899988749917779999777977647999


Q ss_pred             HHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             9999996198699997889943999997347
Q gi|255764476|r  761 VESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       761 v~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      |+.+++.|||.|+++|.+++||+|+++||..
T Consensus        81 ~~~~~~~~~g~i~~~s~~~~Gt~~~i~lp~~  111 (111)
T pfam02518        81 VRKLVELHGGTITVESEPGGGTTFTFTLPLE  111 (111)
T ss_pred             HHHHHHHCCCEEEEEECCCCEEEEEEEEEEC
T ss_conf             9999998799899996599838999999709


No 44 
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.94  E-value=2.7e-26  Score=198.02  Aligned_cols=102  Identities=33%  Similarity=0.638  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHCCCC-CCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             999999998867753888-6889999998799899999978897897786541488376268988885663799999999
Q gi|255764476|r  687 LLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI  765 (792)
Q Consensus       687 L~QVl~NLl~NAik~~~~-gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iV  765 (792)
                      |+||+.||++||+||+++ .+.|+|.+...++.+.|+|+|||+|||++.++++|+||++.......+|+||||+||+.++
T Consensus         1 l~~vl~nLl~NAik~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~g~GlGL~i~~~i~   80 (103)
T cd00075           1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDGSRSRKGGGTGLGLSIVKKLV   80 (103)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             96999999999998678999489999998399999999977994088999760697501788877898650599999999


Q ss_pred             HHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             96198699997889943999997
Q gi|255764476|r  766 NLHGGHVSISSSDEGVTTINCRI  788 (792)
Q Consensus       766 e~hgG~I~v~S~~G~Gttf~v~l  788 (792)
                      +.|||.|+++|.+|+||+|+++|
T Consensus        81 ~~~~G~i~i~s~~~~Gt~~~i~l  103 (103)
T cd00075          81 ELHGGRIEVESEPGGGTTFTITL  103 (103)
T ss_pred             HHCCCEEEEEECCCCCEEEEEEC
T ss_conf             98899899996599919999989


No 45 
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=99.93  E-value=2.5e-22  Score=170.79  Aligned_cols=224  Identities=11%  Similarity=0.004  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHC------CCE
Q ss_conf             99999999860699789998179970014134123218983202344432118946789899999999853------965
Q gi|255764476|r   67 DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE------GQS  140 (792)
Q Consensus        67 ~~~~r~~all~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l~~~------g~~  140 (792)
                      .+..+|++.|+..|..+++-|..+....+........|++.++.--..+...++++........+...+..      |..
T Consensus         9 ~~~~~fr~~lE~s~~GIviiD~~GrIv~~N~aa~~l~GYs~eEllG~~~~~L~p~d~~~~~~~~l~~~~~~g~~~~~g~~   88 (799)
T PRK11359          9 AADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMS   88 (799)
T ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCE
T ss_conf             54799999996188549999699909987189999879299998599889927853331239999987742655445640


Q ss_pred             EEEEEECCCCEEEEEEEEE--E--CCE--EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             8999986897299983045--5--754--899874010689999999999999999999999998516800589815992
Q gi|255764476|r  141 FDLVAETQNDCAIKIEGRV--S--GSC--AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD  214 (792)
Q Consensus       141 f~l~~~t~~g~~i~~~Gr~--~--g~~--a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGr  214 (792)
                      .++....++|..+++.-..  .  +|.  .+..++|+|.           +.+++++.+.++.++|+++.++|+.|.+|+
T Consensus        89 ~E~~~~RKDGs~~~velsvs~i~~~g~i~~l~ivrDITe-----------e~a~~e~~r~l~~~ld~~~~~I~i~D~~g~  157 (799)
T PRK11359         89 RELQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASV-----------EMAQKEQTRQLIIAVDHLDRPVIVLDPERH  157 (799)
T ss_pred             EEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEECCH-----------HHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             489998588889999999977647992899999997689-----------999999999999998626872999918987


Q ss_pred             EEEECHHHHHHHCCCCCCHHHHHCCCC-CCC-----CHHHHHHHHHHCCCCCEEEEE-EEEEECCEEEEEEEEEEECC--
Q ss_conf             898525789873677877566101585-338-----967899998612578703457-88865690789999976328--
Q gi|255764476|r  215 ILWANISYKKNTETEGIVFQKAIGESR-KLF-----KEEIKKRMISSSALEKNFCET-VSTLEHGNNKSYKIVRVLNS--  285 (792)
Q Consensus       215 i~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~rr~~~v~~~~~~--  285 (792)
                      ++++|++|+++++   ++.++.++... +++     .......+.........++.. .....+|+..|+.++..|..  
T Consensus       158 i~~vN~a~~el~G---y~~eEl~G~~~~~ll~~pe~~~~~~~~~~~~l~~~~~~~~E~~~~~kdG~~~wv~~s~~pi~d~  234 (799)
T PRK11359        158 IVQCNRAFTEMFG---YCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDV  234 (799)
T ss_pred             EEEECHHHHHHHC---CCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEEECC
T ss_conf             8998778999859---9878974898899834878847999999999864897305899982699799999898899848


Q ss_pred             C----CEEEEEEEHHHHHHHHHH
Q ss_conf             9----529998304589998878
Q gi|255764476|r  286 F----GEAGIAIDVSKEITVNDQ  304 (792)
Q Consensus       286 ~----G~~Gia~DITErk~ae~a  304 (792)
                      .    +.+++..||||+|++++.
T Consensus       235 ~g~~~~~v~i~~DITErr~~~~l  257 (799)
T PRK11359        235 LAHLQNLVMTFSDITEERQIRQL  257 (799)
T ss_pred             CCCEEEEEEEEEECCHHHHHHHH
T ss_conf             89888999999731588899999


No 46 
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.93  E-value=1e-20  Score=159.77  Aligned_cols=331  Identities=15%  Similarity=0.274  Sum_probs=242.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC-CCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             95799999999999999999999620343289968-98488640588878289878943898388988777630256114
Q gi|255764476|r  418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG  496 (792)
Q Consensus       418 DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~-dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~  496 (792)
                      +++.+++..+.      .-.+.+.+++-|+.|++- +.|.+.+|.-...++        ++-....+......       
T Consensus       333 ~m~~eL~~~~~------l~~eIIs~lP~GlLVYdF~sN~~i~SNkIAdhLL--------Phl~LqkI~~MA~q-------  391 (881)
T PRK10618        333 SMSGELRILRA------INEEIVSLLPLGLLVYDFSSNRTVISNKIADHLL--------PHLNLQKITTMAEQ-------  391 (881)
T ss_pred             HHHHHHHHHHH------HHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHC--------CCCCHHHHHHHHHH-------
T ss_conf             48889999988------6888985487506999746895773026788655--------76678999999997-------


Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68899874026544311568999725038889999705887663123206899998888999999999999999999996
Q gi|255764476|r  497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV  576 (792)
Q Consensus       497 ~~~~~~~i~~~~~~r~~~~~~~~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~v  576 (792)
                          .+++--...+..-++-++-         ...-.|+ -.+..++|=-...-+.+.|+.++...++-.+++..|++||
T Consensus       392 ----H~GvIQ~tInNevYEIr~~---------rSq~~p~-T~LFii~DqDkEvLvnKkLq~AqreYeKN~qaRk~~l~Ni  457 (881)
T PRK10618        392 ----HQGVIQATINNELYEIRMF---------RSQVAPR-TQLFIIRDQDREVLVNKKLQQAQREYEKNQQARRAFLQNI  457 (881)
T ss_pred             ----HCCEEEEEECCEEEEEEEE---------ECCCCCC-EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ----3786899883606788854---------2257875-3799997575899988999999999986699999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHH
Q ss_conf             66632258999999999735777889989999999999999999999999999988514983000233069999999999
Q gi|255764476|r  577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ  656 (792)
Q Consensus       577 SHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~  656 (792)
                      ++||+.|+..|.-.+.-|....     +  .+.++.+...+..+.++|++|-=+.++|++....+.++|.+..++++++.
T Consensus       458 ~~el~~Pl~~l~~~~~~l~~~~-----~--~~~l~~L~~qs~~i~~lidnI~Lln~LEsq~W~~~~~~Fsl~~Lid~~l~  530 (881)
T PRK10618        458 GDELKEPVQSLAELAAQLNAPE-----S--QQLLKQLAEQADVLVRLIDNIQLANMLENDEWKSEQTLFSLQDLIDEVVP  530 (881)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9998778999999999862524-----4--67999999999999999988999988860567656771049999999999


Q ss_pred             HHHHHHHHCCCEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE---CCEEEEEEEECCCCCCH
Q ss_conf             9999998489689999569860-8998789999999999886775388868899999987---99899999978897897
Q gi|255764476|r  657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIPE  732 (792)
Q Consensus       657 ~~~~~~~~~~i~l~~~~~~~~~-~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~---~~~v~i~V~D~G~GI~~  732 (792)
                      ..-+.+..||..|-+..-.+.. ...||+.-|+.|+.=|+.=|+.-|. =|.|++++..+   .+.+.|.+.|||.|++.
T Consensus       531 e~Lp~i~~KGL~L~~hn~l~~~~~~~gD~~aLrkil~lLl~YaitTT~-~GKItl~v~~~~~~~~~l~i~i~DTG~Gls~  609 (881)
T PRK10618        531 EVLPAIKRKGLQLLIHNHLKANDMRRGDRDALRKILLLLLQYAVTTTQ-YGKITLEVDQDESSEERLTFRILDTGEGVSI  609 (881)
T ss_pred             HHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCEEEEEEECCCCCCCH
T ss_conf             876898742703332347988997047899999999999988811144-5259999825877786389999547888788


Q ss_pred             HHHHHHCCCCEECCCCCC-CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             786541488376268988-88566379999999996198699997889943999997347
Q gi|255764476|r  733 DMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       733 e~~~riF~~F~~~~~~~~-~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      ..++.+=-||-.-....+ ..++||-+.+|+.++..+||+..+.|.++-||++++++|..
T Consensus       610 ~El~Nl~~PFl~~t~~Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y~i~lp~~  669 (881)
T PRK10618        610 HEIDNLHFPFLNQTQGDRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRYSVHLKML  669 (881)
T ss_pred             HHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCC
T ss_conf             888553797768312211137887299999999998489678841567766479984267


No 47 
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=99.89  E-value=4.3e-20  Score=155.53  Aligned_cols=226  Identities=13%  Similarity=0.139  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHH-----HHHHHHHHCCCCCE
Q ss_conf             9999999999998516800589815992898525789873677877566101585338967-----89999861257870
Q gi|255764476|r  187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKN  261 (792)
Q Consensus       187 ~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~-----~~~~~~~~~~~~~~  261 (792)
                      +...++..||++++.+|.+|++.|.+|+|++||+||++++   ||+.++.++.....+.+.     ..+........+..
T Consensus         6 ~~~~~~~~fr~~lE~s~~GIviiD~~GrIv~~N~aa~~l~---GYs~eEllG~~~~~L~p~d~~~~~~~~l~~~~~~g~~   82 (799)
T PRK11359          6 ADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLW---GYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKA   82 (799)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHH---CCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             1345479999999618854999969990998718999987---9299998599889927853331239999987742655


Q ss_pred             -----EEEEEEEEECCEEEEEEEEEEECCC-C---EEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEC
Q ss_conf             -----3457888656907899999763289-5---299983045899988788999999843089599984898089853
Q gi|255764476|r  262 -----FCETVSTLEHGNNKSYKIVRVLNSF-G---EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN  332 (792)
Q Consensus       262 -----~~~~~~~~~~G~rr~~~v~~~~~~~-G---~~Gia~DITErk~ae~aLrr~~e~Ld~l~~~v~ifd~~~rl~~~N  332 (792)
                           ..+......+|...|.+++..|... |   .+++..|||++++.+++.++....+++++.+|+++|.++++.++|
T Consensus        83 ~~~g~~~E~~~~RKDGs~~~velsvs~i~~~g~i~~l~ivrDITee~a~~e~~r~l~~~ld~~~~~I~i~D~~g~i~~vN  162 (799)
T PRK11359         83 RVEGMSRELQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCN  162 (799)
T ss_pred             CCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEC
T ss_conf             44564048999858888999999997764799289999999768999999999999999862687299991898789987


Q ss_pred             HHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHCCCC--CCEEEECCCCCEEEE--EEEE
Q ss_conf             68885509997896049987999998975477766465--78899999987624676--502688789818999--9735
Q gi|255764476|r  333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSET--HKDTWHLPNGQTLHV--IVTS  406 (792)
Q Consensus       333 ~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d--~~~w~~~~~~~~~~~~~--~~~~w~l~DGr~l~v--~~~~  406 (792)
                      ++|+++|||.++.+.+++... ++       ..|+.++  +..+..    .......  .+.....+||+.+++  ...|
T Consensus       163 ~a~~el~Gy~~eEl~G~~~~~-ll-------~~pe~~~~~~~~~~~----~l~~~~~~~~E~~~~~kdG~~~wv~~s~~p  230 (799)
T PRK11359        163 RAFTEMFGYCISEASGMQPDT-LL-------NIPEFPADNRIRLQQ----LLWKTARDQDEFLLLTRTGEKIWIKASISP  230 (799)
T ss_pred             HHHHHHHCCCHHHHCCCCHHH-HH-------CCCCCCHHHHHHHHH----HHHCCCCCEEEEEEECCCCCEEEEEEEEEE
T ss_conf             789998599878974898899-83-------487884799999999----986489730589998269979999989889


Q ss_pred             --CCCC---CEEEEECCHHHHHHHHH
Q ss_conf             --6998---68999459579999999
Q gi|255764476|r  407 --NPRG---GTIWMFENLTVQVDLET  427 (792)
Q Consensus       407 --~p~G---g~~~~~~DITE~~~le~  427 (792)
                        +.+|   +++.++.||||++++++
T Consensus       231 i~d~~g~~~~~v~i~~DITErr~~~~  256 (799)
T PRK11359        231 VYDVLAHLQNLVMTFSDITEERQIRQ  256 (799)
T ss_pred             EECCCCCEEEEEEEEEECCHHHHHHH
T ss_conf             98488988899999973158889999


No 48 
>PRK13559 hypothetical protein; Provisional
Probab=99.89  E-value=2.3e-18  Score=143.63  Aligned_cols=298  Identities=15%  Similarity=0.187  Sum_probs=192.9

Q ss_pred             HHHHHHHCCCCEEEECC---CCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             99999620343289968---984886405888782898789438983889887776302561146889987402654431
Q gi|255764476|r  436 QGETIDHLSEGVAVFGP---DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK  512 (792)
Q Consensus       436 q~~~ld~l~e~vav~~~---dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~  512 (792)
                      ..+.+.+..-++.+.++   |.-|+|+|++|++|+||+.+++.++. +.-+.    ..-.++..-..++..+..-.+  .
T Consensus        47 ~~~a~~~~r~a~~itd~~~~d~PIiy~N~aF~~lTGYs~~EviGrn-crfLq----Gp~t~~~~v~~ir~ai~~~~~--~  119 (363)
T PRK13559         47 FEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRN-CRFLQ----GAGTDPAAVAKIRAAIAAERV--V  119 (363)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCEEEECHHHHHHHCCCHHHHCCCC-CHHCC----CCCCCHHHHHHHHHHHHCCCC--E
T ss_conf             9999974774389968999999889988799976398979984999-24108----999998999999999983994--6


Q ss_pred             EEEEEEEECCEEEEE--EEEEECCCC--CEE---EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             156899972503888--999970588--766---3123206899998888999999999999999999996666322589
Q gi|255764476|r  513 SLQGTLELLSDSVLE--YSIIPLPNA--QTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT  585 (792)
Q Consensus       513 ~~~~~~~~~dG~~~~--~~~~pl~dg--~~l---~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt  585 (792)
                      ..+..-.+|||+.++  +...|+.|.  ...   .+..||||.++.+.+..        .   +..++.-|.|-.+|-|.
T Consensus       120 ~~el~nyrKDGs~fwn~l~isPV~D~~G~v~~fig~q~DvTd~~~~~a~e~--------~---~~~LlrEl~HRVKN~La  188 (363)
T PRK13559        120 VVELLNYRKDGSPFWNALHLGPIYDEDGKLLYFFGSQWDVTDIRAVRALEA--------H---ERRLAREVDHRSKNVFA  188 (363)
T ss_pred             EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHH--------H---HHHHHHHHHHHHHHHHH
T ss_conf             999999826998247768988879899979999999985155420455899--------9---99999998887661999


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             99999999735777889989999999999999999999--9999999885149830002330699999999999999998
Q gi|255764476|r  586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL--VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH  663 (792)
Q Consensus       586 ~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~l--i~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~  663 (792)
                      .|.+++.+-...    .+.  .++.+.+..   |+..|  +.+.| ++       .-..+.+++.+++...+.-+.    
T Consensus       189 vV~Si~rlq~R~----~~~--~~~~~~l~~---RI~ALa~aH~~L-l~-------~~~~~~v~l~~ll~~~l~~~~----  247 (363)
T PRK13559        189 VVDSIVRLTGRA----DDA--SLYAAAIQE---RVQALARAHETL-LD-------ERGWETVEVEELIRAQVAPYA----  247 (363)
T ss_pred             HHHHHHHHHCCC----CCH--HHHHHHHHH---HHHHHHHHHHHH-HC-------CCCCCCEEHHHHHHHHHHHCC----
T ss_conf             999999965347----984--999999999---999999999998-65-------777662329999999998507----


Q ss_pred             HCCCEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEE--EECCEEEEEEEECCCCCCHHHHHH
Q ss_conf             489689999569860899-878999999999988677538---88688999999--879989999997889789778654
Q gi|255764476|r  664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS---SKGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKS  737 (792)
Q Consensus       664 ~~~i~l~~~~~~~~~~v~-~D~~rL~QVl~NLl~NAik~~---~~gg~I~i~~~--~~~~~v~i~V~D~G~GI~~e~~~r  737 (792)
                      ..+.++.++.+ ++ .+. -....|.=||.-|++||+||.   .++|+|.|+..  ..++.+.+.+.|+|.+.++.    
T Consensus       248 ~~~~ri~~~gp-~v-~l~~~~A~~L~LilhELaTNA~KyGals~~~G~V~V~w~~~~~~~~l~l~W~E~Ggp~v~~----  321 (363)
T PRK13559        248 PRGTRVAFEGP-GI-RLGAASVQPLGLVLHELAVNAIKHGALSADAGRISISWRPSREGGGLVLDWQEQGGPTPPK----  321 (363)
T ss_pred             CCCCEEEEECC-CE-EECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCC----
T ss_conf             88866999889-75-6868887789999999987088735667899779999998178987999997789999989----


Q ss_pred             HCCCCEECCCCCCCCCCCHHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf             1488376268988885663799999999-961986999978899439999973479
Q gi|255764476|r  738 VFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       738 iF~~F~~~~~~~~~~GtGLGLsiv~~iV-e~hgG~I~v~S~~G~Gttf~v~lP~~e  792 (792)
                               +    ...|+|.-|+.+.| ...||+|.++=.+ .|+.+++++|..|
T Consensus       322 ---------p----~~~GFGs~LI~~~v~~qL~G~v~~~~~~-~Gl~~~i~~Plrq  363 (363)
T PRK13559        322 ---------L----QKRGFGTVIISAMVESQLKGQIEKDWAD-DGLLARIEIPVRQ  363 (363)
T ss_pred             ---------C----CCCCCHHHHHHHHHHHHCCCEEEEEECC-CEEEEEEEEECCC
T ss_conf             ---------9----9998569999999898759879999879-9089999996689


No 49 
>KOG0519 consensus
Probab=99.88  E-value=5.8e-24  Score=182.01  Aligned_cols=233  Identities=27%  Similarity=0.297  Sum_probs=194.1

Q ss_pred             HHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8889999999---999999999--99996666322589999999997357778899899999999999999999999999
Q gi|255764476|r  553 RALTEKNEAL---RKADEIKNS--FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI  627 (792)
Q Consensus       553 ~aL~e~~eal---e~a~~lk~~--F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~di  627 (792)
                      ..+.+.++.+   +++.-++++  |.+++|||||+||+.  |+..++-++   .++..+..|...+..++..++.+++++
T Consensus       200 ~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~~~t---~~~~~~~~~~~~~~~~~~~~~s~ln~i  274 (786)
T KOG0519         200 TTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GMLGGLSDT---DLDSDQRLILNTDRVSAKSLLSLLNDI  274 (786)
T ss_pred             HHHHHHHHHHCCCCCHHCCCCCHHCCCCCCCEEECCCCC--CCCCEEECC---CCCHHHHHHHCCCHHHHHCHHHHHHHH
T ss_conf             655212566512530002742011134456324434445--664122034---421568987430012200001377776


Q ss_pred             HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999885149830002330699999999999999998489689999569860-8998789999999999886775388868
Q gi|255764476|r  628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS  706 (792)
Q Consensus       628 Ldls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~D~~rL~QVl~NLl~NAik~~~~gg  706 (792)
                      +|.+++++|.+++.-.+||+..+++.+...+.+.+..+++.+....+.+.| .+.+|+.+++||+.|+++||+||+..|.
T Consensus       275 ~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~  354 (786)
T KOG0519         275 LDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGH  354 (786)
T ss_pred             HHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf             40113532355403223452666677787766655136734652078777642035610110003332014435444662


Q ss_pred             EEEEEEEEE---------------------------------C---------------CEEEEEEEECCCCCCHHHHHH-
Q ss_conf             899999987---------------------------------9---------------989999997889789778654-
Q gi|255764476|r  707 TVILKAARD---------------------------------N---------------GDFIFSVKNNGSSIPEDMCKS-  737 (792)
Q Consensus       707 ~I~i~~~~~---------------------------------~---------------~~v~i~V~D~G~GI~~e~~~r-  737 (792)
                       |.+++...                                 +               -.-.+.+.|+|.||+...... 
T Consensus       355 -i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~  433 (786)
T KOG0519         355 -LEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSN  433 (786)
T ss_pred             -EEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCHH
T ss_conf             -2466651211004678997545776535155667888741331242204212235766520223666406850233046


Q ss_pred             HCCCCEECCC--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             1488376268--98888566379999999996198699997889943999997347
Q gi|255764476|r  738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       738 iF~~F~~~~~--~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      +|.+|-+...  ...++|+|+|++++++++++++|.+.+.+.++.|++|++.+|..
T Consensus       434 ~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~  489 (786)
T KOG0519         434 VFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLL  489 (786)
T ss_pred             HHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             55545146610034568764533222328899886743211003475222331235


No 50 
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.86  E-value=3.5e-19  Score=149.29  Aligned_cols=162  Identities=19%  Similarity=0.381  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCEEEECHHH---HHHHH
Q ss_conf             999999999999998851498300023306999999999999999984--8968999956986089987899---99999
Q gi|255764476|r  617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQR---LLQIF  691 (792)
Q Consensus       617 ~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~--~~i~l~~~~~~~~~~v~~D~~r---L~QVl  691 (792)
                      ...+..+++++-+      +.|.+..  +.+..+....-..++..+++  |.|.|.+.  ..  .+..|..=   |.--|
T Consensus       315 ~~~l~r~~~dLq~------~vm~~RM--vP~~~lf~r~~R~VRdlar~~gK~V~L~i~--G~--dtelDr~Ile~L~dPL  382 (662)
T PRK10547        315 MGQLQRNARDLQE------SVMSIRM--MPMEYVFSRFPRLVRDLAGKLGKQVELTLV--GS--STELDKSLIERIIDPL  382 (662)
T ss_pred             HHHHHHHHHHHHH------HHHHHCC--EEHHHHHHHHHHHHHHHHHHHCCEEEEEEE--CC--CEEEHHHHHHHHHHHH
T ss_conf             9999999999999------9998625--218998888789999999986982599996--68--6777199999888799


Q ss_pred             HHHHHHHHHCC------------CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH---------------------HHH
Q ss_conf             99988677538------------886889999998799899999978897897786---------------------541
Q gi|255764476|r  692 SKILSNAMDFS------------SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC---------------------KSV  738 (792)
Q Consensus       692 ~NLl~NAik~~------------~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~---------------------~ri  738 (792)
                      ++||-||++|.            |+-|+|+|++.+.++.+.|+|+|.|.||+++..                     +=|
T Consensus       383 ~HLlRNAvDHGIE~peeR~a~GKp~~G~I~l~a~~~g~~v~I~v~DDGrGiD~e~Ir~kAv~kGL~~~e~lsd~e~~~LI  462 (662)
T PRK10547        383 THLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDDEVGMLI  462 (662)
T ss_pred             HHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf             99987424304899889987599972799999998599999999818999899999999998499985338999999997


Q ss_pred             CCC-CEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             488-3762689888856637999999999619869999788994399999734
Q gi|255764476|r  739 FNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       739 F~~-F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                      |.| |.|....+...|-|.||-+||+-|+..||+|.|+|++|+||+|+++||.
T Consensus       463 F~PGFSTa~~Vt~lSGRGVGmDVV~~~v~~l~G~v~v~S~~G~GT~F~l~lPl  515 (662)
T PRK10547        463 FAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPL  515 (662)
T ss_pred             HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC
T ss_conf             17998623223568886646899999999829989999608980799997887


No 51 
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.84  E-value=1.2e-18  Score=145.54  Aligned_cols=167  Identities=20%  Similarity=0.382  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCEEEECHHHHHH
Q ss_conf             99999999999999999998851498300023306999999999999999984--8968999956986089987899999
Q gi|255764476|r  612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQ  689 (792)
Q Consensus       612 ~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~--~~i~l~~~~~~~~~~v~~D~~rL~Q  689 (792)
                      ........+..++.++-|-      -|.....  .+..+....-.++++.+.+  |.|+|.+.-  .  ...-|..=|.+
T Consensus       365 el~~~~~~l~~~~~~LQd~------vm~~RMv--P~~~vf~RfpR~VRdla~~lgK~V~L~ieG--~--~telDksIlE~  432 (716)
T COG0643         365 ELDEALRQLSRLTTDLQDE------VMKIRMV--PFEQVFSRFPRMVRDLARKLGKQVELVIEG--E--DTELDKSILER  432 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHCE--EHHHHHHHCCHHHHHHHHHHCCEEEEEEEC--C--CEEEHHHHHHH
T ss_conf             9999999999999999999------9997000--399987444099999999869916999964--8--71342989988


Q ss_pred             H---HHHHHHHHHHCC------------CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH-------------------
Q ss_conf             9---999988677538------------886889999998799899999978897897786-------------------
Q gi|255764476|r  690 I---FSKILSNAMDFS------------SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC-------------------  735 (792)
Q Consensus       690 V---l~NLl~NAik~~------------~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~-------------------  735 (792)
                      +   |.+|+-||++|.            |+-|+|++++...++.++|.|+|.|.||.++.+                   
T Consensus       433 l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lS  512 (716)
T COG0643         433 LGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLS  512 (716)
T ss_pred             HCCCHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf             64669988850011058988999875989863699999837986999995689987999999999982998867752079


Q ss_pred             -----HHHCCC-CEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             -----541488-3762689888856637999999999619869999788994399999734
Q gi|255764476|r  736 -----KSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       736 -----~riF~~-F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                           .-||.| |.|..+.+.-.|-|.||=+||+-|+..||+|.|+|++|+||||++.||-
T Consensus       513 d~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPL  573 (716)
T COG0643         513 DEEILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL  573 (716)
T ss_pred             HHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf             9999988736998734111016577657899999999739989999627897699996687


No 52 
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.83  E-value=5.6e-17  Score=134.16  Aligned_cols=190  Identities=23%  Similarity=0.323  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHH
Q ss_conf             996666322589999999----9973577788-99899999999999999999999999999885149830002330699
Q gi|255764476|r  574 QHVSYELRSPLTNIIGFT----DLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN  648 (792)
Q Consensus       574 ~~vSHELrtPLt~I~G~a----~lL~~~~~g~-l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~  648 (792)
                      +.+++||-.+|.-.+.|.    ++|+.....+ -.++..+-+..|.+.......-+..+|.--|       +...+.++.
T Consensus       366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fR-------l~l~~~~L~  438 (568)
T PRK10935        366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFR-------LTIQEANLG  438 (568)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCHH
T ss_conf             8999984412665789999999999987422565388999999999999999999999999832-------267756879


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHH---HHHHHHHHHHHHHHCCCCCCEEEEEEEEE-CCEEEEEEE
Q ss_conf             99999999999999848968999956986089987899---99999999886775388868899999987-998999999
Q gi|255764476|r  649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR---LLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVK  724 (792)
Q Consensus       649 ~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~r---L~QVl~NLl~NAik~~~~gg~I~i~~~~~-~~~v~i~V~  724 (792)
                      ..++..++.++.   ..++.+.+++.  +|...-|+.+   +-||+.+.|+|++||+. ++.|+|++... ++.+.++|+
T Consensus       439 ~AL~~~~~~~~~---q~~~~i~l~~~--l~~~~l~~~~~i~llrIvqEALtN~~KHA~-A~~V~V~~~~~~~~~v~l~V~  512 (568)
T PRK10935        439 SALEEMLDQLRN---QTSAKITLDCR--LPSQALDAQQQVHLLQIIREATLNAIKHAN-ASEIAVSCVTNPDGEVTVSIR  512 (568)
T ss_pred             HHHHHHHHHHHH---HCCCEEEEECC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCEEEEEEE
T ss_conf             999999999975---11946999706--887778888999999999999999998089-987999999748987999997


Q ss_pred             ECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf             78897897786541488376268988885663799999999961986999978899439999973479
Q gi|255764476|r  725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       725 D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e  792 (792)
                      |||+||++...                .+.+.||.|.+.-++..||++.++|.||+||+++++||..+
T Consensus       513 DnG~Gf~~~~~----------------~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~~~  564 (568)
T PRK10935        513 DDGVGIGELKE----------------PEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPSQQ  564 (568)
T ss_pred             ECCCCCCCCCC----------------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCC
T ss_conf             79947898788----------------89985759999999966998999977999669999858988


No 53 
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.72  E-value=7.5e-14  Score=112.75  Aligned_cols=185  Identities=17%  Similarity=0.222  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHH
Q ss_conf             63225899999999973577788998999999999999999999999999998851498300023306999999999999
Q gi|255764476|r  579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI  658 (792)
Q Consensus       579 ELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~  658 (792)
                      .|-..|+.+.-.+++|+... +...+..++.++.|.+.......-+..+|.--|.       ...+-++...+...+..+
T Consensus       372 slaQ~Ls~Lkiq~~~l~~~~-~~~~~~~~~~l~~i~~~~~~a~~~lReLl~~fR~-------~l~~~~l~~aL~~~i~~~  443 (569)
T PRK10600        372 SIAQSLSCMKMQVSCLQMQG-DALPESSRELLSQIRNELNASWAQLRELLTTFRL-------QLTEPGLRPALEASCEEF  443 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHHHHHHHHHHHH
T ss_conf             87222789999999999730-5798889999999999999999999999998355-------777566799999999999


Q ss_pred             HHHHHHCCCEEEEEECCCCCEEEE-CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHH
Q ss_conf             999984896899995698608998-7899999999998867753888688999999879989999997889789778654
Q gi|255764476|r  659 ATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS  737 (792)
Q Consensus       659 ~~~~~~~~i~l~~~~~~~~~~v~~-D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~r  737 (792)
                      +.   ..++.+.+++......+.. ....+-||+..-|+|++||+... .|+|++...++.+.++|+|+|+|||++.   
T Consensus       444 ~~---~~g~~i~l~~~~~~~~l~~~~~i~l~rIvqEALsNv~KHA~A~-~v~V~l~~~~~~~~l~I~DdG~Gf~~~~---  516 (569)
T PRK10600        444 SA---RFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQAS-EVVVTVAQNDNQVKLSVQDNGCGVPENA---  516 (569)
T ss_pred             HH---HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCCEEEEEEEECCCCCCCCC---
T ss_conf             97---6097799995588667987899999999999999999708998-7999999769989999988998989888---


Q ss_pred             HCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             148837626898888566379999999996198699997889943999997347
Q gi|255764476|r  738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       738 iF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                                 .  ++.+.||.|-+.=++..||++.+.|.||+||+++++||-+
T Consensus       517 -----------~--~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~f~P~  557 (569)
T PRK10600        517 -----------E--RSNHYGLIIMRDRAQSLRGDCSVRRRESGGTEVVVTFIPE  557 (569)
T ss_pred             -----------C--CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCC
T ss_conf             -----------8--8999781599999997699899986699958999997589


No 54 
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.70  E-value=9.4e-16  Score=125.79  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=105.6

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHH
Q ss_conf             010689999999999999999999999998516800589815992898525789873677877566101585-3389678
Q gi|255764476|r  170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI  248 (792)
Q Consensus       170 d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~  248 (792)
                      .+..++.|+.++++.+.+|.+....||+++|++|++||++|++|++.-||+||+..++   .+.++.++... ++++++.
T Consensus       132 ~~~~l~~e~~~r~~~q~~l~~~~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~G---~~e~eliG~t~~d~~~~e~  208 (779)
T PRK11091        132 AFEDLKNEIKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTG---KSEKQLVGLTPKDVYSPEA  208 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHC---CCHHHHCCCCHHHHCCHHH
T ss_conf             9999999999989999999998899998850287515787798765341099998809---9989984998355279988


Q ss_pred             HHHH----HHHCCCCCEEE-EEEEEEECCEEEEEEEEEEECCC------CEEEEEEEHHHHHHHHHHHHH
Q ss_conf             9999----86125787034-57888656907899999763289------529998304589998878899
Q gi|255764476|r  249 KKRM----ISSSALEKNFC-ETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTH  307 (792)
Q Consensus       249 ~~~~----~~~~~~~~~~~-~~~~~~~~G~rr~~~v~~~~~~~------G~~Gia~DITErk~ae~aLrr  307 (792)
                      .+.+    ......+.+.. +......+|.+.+|++.++|..+      |.+|+++||||||++|++|++
T Consensus       209 a~~~~~~D~~v~~~~~~~~~e~w~~~~dG~~~~~e~~k~P~~d~~g~~~G~~g~~rDITerk~aeeaLE~  278 (779)
T PRK11091        209 AEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEK  278 (779)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHH
T ss_conf             9999973899986479821113466489866789986401353899788786300160177899999999


No 55 
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.69  E-value=8.3e-14  Score=112.44  Aligned_cols=183  Identities=16%  Similarity=0.286  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHH
Q ss_conf             63225899999999973577788998999999999999999999999999998851498300023306999999999999
Q gi|255764476|r  579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI  658 (792)
Q Consensus       579 ELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~  658 (792)
                      |+-.-||+|.-.+.+++...  +.++..++..+.|.+.+.++.+-+.+++.  ++.    +-...+..+.+.++..+...
T Consensus       314 EiGQ~LTAIr~~a~~i~r~~--~~~~~~~~~a~~I~~l~~~i~~~vR~ll~--~LR----P~~LDdLGL~~AL~~Lv~e~  385 (497)
T PRK11644        314 EIGQTITAIRTQASIVKRLA--ADNASVKQSGQLIEQLSLGVYDAVRRLLG--RLR----PRQLDDLTLEQAIRSLMREL  385 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC----CCCHHHCCHHHHHHHHHHHH
T ss_conf             34059999999999986326--99766899999999999999999999998--609----03111248999999999987


Q ss_pred             HHHHHHCCCEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHH
Q ss_conf             99998489689999569860899-87899999999998867753888688999999879989999997889789778654
Q gi|255764476|r  659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS  737 (792)
Q Consensus       659 ~~~~~~~~i~l~~~~~~~~~~v~-~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~r  737 (792)
                      +  .+..++.+.+++..+...+. .-..-+-.|..--++|++||+... .|+|+....++.+.+.|+|||+|++++..  
T Consensus       386 ~--~~~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~KHA~A~-~V~I~L~~~~~~l~L~I~DDG~Gf~~~~~--  460 (497)
T PRK11644        386 E--LEDRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIVKHADAS-AVTIQGWQQDERLMLVIEDNGSGLPPGSG--  460 (497)
T ss_pred             H--HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCCEEEEEEEECCCCCCCCCC--
T ss_conf             6--525795599982687667982468899999999999999737887-69999997699899999889989898989--


Q ss_pred             HCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             148837626898888566379999999996198699997889943999997347
Q gi|255764476|r  738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       738 iF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                                     ..|+||.=-|.=|+..||+..++|.+  ||+++|++|..
T Consensus       461 ---------------~~G~GL~GMrERV~aLGG~l~I~S~~--GT~I~V~LP~~  497 (497)
T PRK11644        461 ---------------QQGFGLRGMQERVSALGGTLTISCTH--GTRLSVTLPQR  497 (497)
T ss_pred             ---------------CCCCCCHHHHHHHHHCCCEEEEEECC--CCEEEEECCCC
T ss_conf             ---------------99989267999999749979998289--97799958999


No 56 
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.69  E-value=6.9e-14  Score=113.02  Aligned_cols=196  Identities=19%  Similarity=0.228  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             99999999999996666322589999999997357778899899999999999999999999999999885149830002
Q gi|255764476|r  563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY  642 (792)
Q Consensus       563 e~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~  642 (792)
                      ++-+|+..|.=-.++|.    |++|.-..++... ...+-.++.++.++.+.+-.+..+   +++..+-.      .|.+
T Consensus       169 ~ER~RIARdLHDsv~q~----L~~i~m~~~~~~~-~~~~~~e~~~~~l~~i~~~~~e~l---~evR~~v~------~Lrp  234 (365)
T COG4585         169 EERNRIARDLHDSVGQS----LTAISMLLALLLL-LADEDAEKAQEELKEIEKLLREAL---QEVRALVR------DLRP  234 (365)
T ss_pred             HHHHHHHHHHCCHHHHH----HHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHH------HCCC
T ss_conf             89999889850668799----9999999999887-212684889999999999999999---99999999------7197


Q ss_pred             EEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEE
Q ss_conf             33069999999999999999848968999956986089-98789999999999886775388868899999987998999
Q gi|255764476|r  643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF  721 (792)
Q Consensus       643 ~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v-~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i  721 (792)
                      .+.+-..++......+...-...+++......+..+.+ ..-..-+-.++.--++||+||+..- +|.|+....++.+++
T Consensus       235 ~~l~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~-~v~V~l~~~~~~l~l  313 (365)
T COG4585         235 VELEGLGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQAT-EVRVTLERTDDELRL  313 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCCEEEE
T ss_conf             3221211799999999998775083788615764467996899999999999998998757845-699999982988999


Q ss_pred             EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             999788978977865414883762689888856637999999999619869999788994399999734
Q gi|255764476|r  722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                      +|.|||.|.+++...                 .|+||.=-|.=|+..||+++++|.||+||++++++|.
T Consensus       314 ~V~DnG~Gf~~~~~~-----------------~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl  365 (365)
T COG4585         314 EVIDNGVGFDPDKEG-----------------GGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL  365 (365)
T ss_pred             EEEECCCCCCCCCCC-----------------CCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf             999899788976457-----------------7766766999999869989998559997799999509


No 57 
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285   NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.69  E-value=1.2e-15  Score=125.03  Aligned_cols=196  Identities=15%  Similarity=0.202  Sum_probs=108.5

Q ss_pred             HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHH----------HHHH
Q ss_conf             999998430895999848980898536888550999789604998799999897547776646578----------8999
Q gi|255764476|r  307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK----------TWKE  376 (792)
Q Consensus       307 r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~----------~w~~  376 (792)
                      -+++++||.|.+|-|.|-.-.+.|+|+||.++.||..+...|+-+  .+|    +.+..|... |.          .|..
T Consensus         5 ~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNE--S~L----Sn~tTPpeV-YQaLWg~la~qkPW~G   77 (496)
T TIGR02938         5 LYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNE--SVL----SNRTTPPEV-YQALWGSLAEQKPWAG   77 (496)
T ss_pred             HHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCC----CCCCCCHHH-HHHHHHHHHHCCCCCC
T ss_conf             688866228803643101456999956632155865621112554--012----685887179-9999988630589865


Q ss_pred             HHHHHHHCCCCCCEEEECCCCCEE--EEEEEE--CCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             999876246765026887898189--999735--69986899---94595799999999999999999999620343289
Q gi|255764476|r  377 NIFSVYKSSETHKDTWHLPNGQTL--HVIVTS--NPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV  449 (792)
Q Consensus       377 ~~~~~~~~~~~~~~~w~l~DGr~l--~v~~~~--~p~Gg~~~---~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav  449 (792)
                      .++.+.            .||+-+  .....|  +.-|..++   .-+||||...||++.+...-.-..+.++.+.+.++
T Consensus        78 ~LlNRr------------kDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vl  145 (496)
T TIGR02938        78 KLLNRR------------KDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVL  145 (496)
T ss_pred             CEECCC------------CCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf             100001------------16530022202020001468815873254543578899888976467899998786541000


Q ss_pred             ECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEE---EE
Q ss_conf             968984886405888782898789438983889887776302561146889987402654431156899972503---88
Q gi|255764476|r  450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VL  526 (792)
Q Consensus       450 ~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~---~~  526 (792)
                      +|.+||+.+.|+.|++|-   .|.-...| -..+....++..  .+.|..+-..-..+    ...+.++.+.-|+   |+
T Consensus       146 lD~~gRv~LdN~~yk~La---~DL~v~ep-a~~~l~lLre~~--~e~~~~~~~q~~af----sn~E~rfD~ggGR~~RWl  215 (496)
T TIGR02938       146 LDEQGRVVLDNLEYKKLA---SDLKVEEP-AELLLKLLREEL--AEDLEELENQEKAF----SNKELRFDRGGGRSARWL  215 (496)
T ss_pred             ECCCCCEEECCHHHHHHH---HHCCCCCC-HHHHHHHHHHHH--HHHHHHHCCCCCEE----CCCEEEEECCCCCCCCCE
T ss_conf             569986881677688787---42141441-799999850876--52786520211010----154035416887885010


Q ss_pred             EEEEE
Q ss_conf             89999
Q gi|255764476|r  527 EYSII  531 (792)
Q Consensus       527 ~~~~~  531 (792)
                      +|.+.
T Consensus       216 Sc~g~  220 (496)
T TIGR02938       216 SCAGR  220 (496)
T ss_pred             EECCC
T ss_conf             20232


No 58 
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.64  E-value=1.1e-12  Score=104.67  Aligned_cols=207  Identities=19%  Similarity=0.275  Sum_probs=142.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             32068999988889999999999999999999966663225899999999973577788998999999999999999999
Q gi|255764476|r  543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN  622 (792)
Q Consensus       543 ~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~  622 (792)
                      .|+|+++..|+.+.+.         .|.-++.-+.|-+.|-|..|...+.+-.....   ++ -.   +....+..|+..
T Consensus         2 ~~~~~~~~~e~~~~~~---------~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~---~~-~~---e~~~~~~~Ri~s   65 (221)
T COG3920           2 LLTTARKETEERLAES---------EKELLLREIHHRVKNNLQIISSLLRLQARKFE---DE-VL---EALRESQNRIQS   65 (221)
T ss_pred             CHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CH-HH---HHHHHHHHHHHH
T ss_conf             0478888899999999---------89999999999988799999999997775236---67-89---999999889999


Q ss_pred             --HHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHH
Q ss_conf             --99999999885149830002330699999999999999998489689999569860899-878999999999988677
Q gi|255764476|r  623 --LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM  699 (792)
Q Consensus       623 --li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~-~D~~rL~QVl~NLl~NAi  699 (792)
                        ++.+.|--+         ....++...+++.+...+.+....+.+.+..+..+.+ .+. --..-|.=|+.-|++||+
T Consensus        66 la~~He~L~~s---------~~~~~~~~~y~~~L~~~l~~~~~~~~~~~~~~~~~~~-~l~~d~A~~Lgliv~EL~tNa~  135 (221)
T COG3920          66 LALIHELLYKS---------GDDTWDFASYLELLASNLFPSYGGKDIRLILDSGPNV-FLDPDTAVPLGLIVHELVTNAL  135 (221)
T ss_pred             HHHHHHHHCCC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCE-EECHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998068---------8651759999999999988762788752788228862-2673678899999999999889


Q ss_pred             HCCC---CCCEEEEEEEEECCE--EEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHH-HHCCCEEE
Q ss_conf             5388---868899999987998--99999978897897786541488376268988885663799999999-96198699
Q gi|255764476|r  700 DFSS---KGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVS  773 (792)
Q Consensus       700 k~~~---~gg~I~i~~~~~~~~--v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iV-e~hgG~I~  773 (792)
                      ||.-   ++|.|.|...+.++.  ..+.|+|+|.|+|.+.-      +         ...|+|+.+|+.+| ++-||.+.
T Consensus       136 Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~~------~---------~~~g~G~~Lv~~lv~~q~~g~~~  200 (221)
T COG3920         136 KHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEAP------L---------SRGGFGLQLVERLVPEQLGGELE  200 (221)
T ss_pred             HHCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCC------C---------CCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             86178889977999999847997179999878989888888------7---------89983799999999996797279


Q ss_pred             EEEECCCCEEEEEEEECCC
Q ss_conf             9978899439999973479
Q gi|255764476|r  774 ISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       774 v~S~~G~Gttf~v~lP~~e  792 (792)
                      ..+..  ||+|+++||..+
T Consensus       201 ~~~~~--Gt~~~i~~~~~~  217 (221)
T COG3920         201 DERPD--GTEFRLRFPLSE  217 (221)
T ss_pred             EECCC--CEEEEEEEECCC
T ss_conf             97499--779999988644


No 59 
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.60  E-value=3e-12  Score=101.76  Aligned_cols=185  Identities=22%  Similarity=0.277  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHH
Q ss_conf             99966663225899999999973577788998999999999999999999999999998851498300023306999999
Q gi|255764476|r  573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN  652 (792)
Q Consensus       573 ~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~  652 (792)
                      .....|.|.|-|++|.++++.-.          +.+..+.+...++-+    +  .+++..+      +.  +++..=+.
T Consensus       263 sqi~pHfL~NtL~~I~~~~~~~~----------~~~~~~~v~~l~~ll----R--~~l~~~~------~~--~~l~~E~~  318 (456)
T COG2972         263 SQINPHFLYNTLETIRMLAEEDD----------PEEAAKVVKALSKLL----R--YSLSNLD------NI--VTLEIELL  318 (456)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHH----H--HHHHCCC------CC--CCHHHHHH
T ss_conf             21261689999999999987357----------999999999999999----9--7500655------53--41999999


Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEECCEEEEEEEECC
Q ss_conf             9999999999848968999956986089-9878999999999988677538----8868899999987998999999788
Q gi|255764476|r  653 EVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFS----SKGSTVILKAARDNGDFIFSVKNNG  727 (792)
Q Consensus       653 ~~~~~~~~~~~~~~i~l~~~~~~~~~~v-~~D~~rL~QVl~NLl~NAik~~----~~gg~I~i~~~~~~~~v~i~V~D~G  727 (792)
                      -+..-+.-+-.+-+..+++..+-+.... .-||.   -++.+|+.||++|.    .+|+.|.+.+...++.+.++|+|||
T Consensus       319 ~~~kyl~iq~~r~~~~le~~~~i~~~~~~l~~p~---l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng  395 (456)
T COG2972         319 LIEKYLEIQKLRIGDRLEVPLPIDEELEPLIDPK---LVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNG  395 (456)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCC
T ss_conf             9999999998199879999720375332023278---8988879999998620469995799999405879999977699


Q ss_pred             CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCE--EEEEEECCCCEEEEEEEECCC
Q ss_conf             97897786541488376268988885663799999999961986--999978899439999973479
Q gi|255764476|r  728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH--VSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       728 ~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~--I~v~S~~G~Gttf~v~lP~~e  792 (792)
                      +||+++....+...       +..+ .|+||+=|+...+.|-|.  +.++|.+|+||++.+.+|..+
T Consensus       396 ~g~~~~~~~~~~~~-------~~~r-~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~  454 (456)
T COG2972         396 PGIDEEKLEGLSTK-------GENR-SGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE  454 (456)
T ss_pred             CCCCHHHHHHHHHC-------CCCC-CCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEHHC
T ss_conf             99587888667641-------5777-77358879999987189762179996489589999986301


No 60 
>PRK13557 histidine kinase; Provisional
Probab=99.58  E-value=7.5e-14  Score=112.76  Aligned_cols=125  Identities=18%  Similarity=0.223  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHCCCCEEEEC---CCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC-----HHHHHHHHHHCCCCCEEE
Q ss_conf             9999999851680058981---59928985257898736778775661015853389-----678999986125787034
Q gi|255764476|r  192 ISVFKVLFDSLDFLVWHRD---QAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFC  263 (792)
Q Consensus       192 ~~~lr~llda~P~~vw~~D---~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~-----~~~~~~~~~~~~~~~~~~  263 (792)
                      .+.|.++++..|+|||+.|   +||+|+|||+||++++   ||+.++.++++..++.     ....+.++.+...+..+.
T Consensus        27 ~~~~~~~v~~~~~~~~~~d~~~~Dg~I~~vN~af~~~t---GYs~eEviGk~~~~L~~p~~~~~~~~~~~~~i~~~~~~~  103 (538)
T PRK13557         27 SDIFFAAVETTRMPMIVTDPRQPDNPIVFANRAFLEMT---GYAAEEIIGNNCRFLQGPETDRATVADVRDAIAERREIA  103 (538)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHH---CCCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf             99999999607973899358999987999839999987---959999869998770898899999999999997599368


Q ss_pred             EEEE-EEECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHH--HHHHHCCCCE
Q ss_conf             5788-8656907899999763289--5----2999830458999887889999--9984308959
Q gi|255764476|r  264 ETVS-TLEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTY--EILHNLTVAI  319 (792)
Q Consensus       264 ~~~~-~~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~--e~Ld~l~~~v  319 (792)
                      .++. ...+|+.+|..++..|+.+  |    .+|+..||||||++|++|++..  +.+.++..++
T Consensus       104 ~E~~n~rKDG~~~w~~~~i~pv~d~~G~~~~~~~i~~DITerk~~E~~L~qaqklealg~~~a~i  168 (538)
T PRK13557        104 TEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQAQKMEALGQLTGGI  168 (538)
T ss_pred             EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999879999999998999999899999999998834449999999999999999999999887


No 61 
>PRK03660 anti-sigma F factor; Provisional
Probab=99.57  E-value=5.4e-14  Score=113.73  Aligned_cols=100  Identities=18%  Similarity=0.315  Sum_probs=84.3

Q ss_pred             CHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHH
Q ss_conf             78999999999988677538---886889999998799899999978897897786541488376268988885663799
Q gi|255764476|r  683 DRQRLLQIFSKILSNAMDFS---SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS  759 (792)
Q Consensus       683 D~~rL~QVl~NLl~NAik~~---~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLs  759 (792)
                      |-..+.-++...+.|||+|.   .+++.|.|.+...++.+.|.|+|+|+||++  .++.|+||+++++...  ++||||+
T Consensus        36 ~~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid~--~~~~~~P~~t~~~~~~--~~GlGl~  111 (146)
T PRK03660         36 ELTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIED--VEEARQPLFTTKPELE--RSGMGFT  111 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCC--HHHCCCCCCCCCCCCC--CCCHHHH
T ss_conf             99999999999999999860367999279999998099999999973789473--7664388776687667--5640589


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             9999999619869999788994399999734
Q gi|255764476|r  760 IVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       760 iv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                      ++++++    .+|+++|.||+||||+.+-..
T Consensus       112 li~~Lm----DeVei~s~~g~GTtV~m~k~l  138 (146)
T PRK03660        112 FMESFM----DEVEVESEPGKGTTIRMKKKL  138 (146)
T ss_pred             HHHHHC----CEEEEEECCCCCEEEEEEEEE
T ss_conf             999838----869999559997899999997


No 62 
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.56  E-value=2.3e-11  Score=95.74  Aligned_cols=179  Identities=22%  Similarity=0.314  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             89999999997357778899899999999999999999999999999885149830002330699999999999999998
Q gi|255764476|r  584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH  663 (792)
Q Consensus       584 Lt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~  663 (792)
                      |+-..--..+|+......+.++..+.+..|..+-+-.-.-+..+|.=-|       +.++.-++...++++++.++   .
T Consensus       388 LS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-------ltL~e~~L~~AL~~~~~~f~---~  457 (574)
T COG3850         388 LSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-------LTLQEAELPPALEQMLAEFS---N  457 (574)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHH---H
T ss_conf             9999999999984278656687999999999999999999999999878-------76056763899999999997---3


Q ss_pred             HCCCEEEEEECCCCCEEEECH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             489689999569860899878---99999999998867753888688999999879989999997889789778654148
Q gi|255764476|r  664 ENNIRIKVISDGKLGSFVADR---QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN  740 (792)
Q Consensus       664 ~~~i~l~~~~~~~~~~v~~D~---~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~  740 (792)
                      ..++++++++.  +|..--++   ..+-||+.-=++||+|++ .+..|.|++...++.+.++|+|||+|||+..      
T Consensus       458 qtg~~~~l~~q--lp~~~lpa~qqvHlLqIvREAlsNa~KHa-~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~------  528 (574)
T COG3850         458 QTGITVTLDYQ--LPPRALPAHQQVHLLQIVREALSNAIKHA-QASEIKVTVSQNDGQVTLTVEDNGVGIDEAA------  528 (574)
T ss_pred             CCCCEEEEECC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCEEEEEEEECCCCCCCCC------
T ss_conf             46973887256--89889987899999999999999899852-6675899998659648999942883779756------


Q ss_pred             CCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             837626898888566379999999996198699997889943999997347
Q gi|255764476|r  741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       741 ~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                               ...| --||.|-+.=.+.-||...+++.+|+||++.++||-+
T Consensus       529 ---------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~~  569 (574)
T COG3850         529 ---------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPPE  569 (574)
T ss_pred             ---------CCCC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCC
T ss_conf             ---------7788-7236999999997257577764599981799995641


No 63 
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.50  E-value=1.8e-11  Score=96.46  Aligned_cols=171  Identities=19%  Similarity=0.297  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEECHHHHHHH
Q ss_conf             9666632258999999999735777889989999999999999999999999999988514983000-233069999999
Q gi|255764476|r  575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN-YSTIVLNDLLNE  653 (792)
Q Consensus       575 ~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~-~~~vdl~~~i~~  653 (792)
                      .=+|=|=|-||+|.   -+....     +++.+|.              |-++-.|-|-   .++.+ .+-++|.+=++.
T Consensus       371 vnPHFLFNaLNTIs---a~IR~n-----pdkAreL--------------il~LS~yfR~---NL~~~~~~~v~L~kEl~~  425 (557)
T COG3275         371 VNPHFLFNALNTIS---AVIRRN-----PDKAREL--------------ILYLSTYFRY---NLENNTQEIVTLSKELEH  425 (557)
T ss_pred             CCHHHHHHHHHHHH---HHHCCC-----HHHHHHH--------------HHHHHHHHHH---HHCCCCCEEEEHHHHHHH
T ss_conf             37088888888778---886178-----2799999--------------9999999998---734787158655999999


Q ss_pred             HHHHHH---HHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEEECCEEEEEEEEC
Q ss_conf             999999---99984896899995698608998789999999999886775388----86889999998799899999978
Q gi|255764476|r  654 VKQSIA---TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS----KGSTVILKAARDNGDFIFSVKNN  726 (792)
Q Consensus       654 ~~~~~~---~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~----~gg~I~i~~~~~~~~v~i~V~D~  726 (792)
                      +-.-++   .+.. ...++.+++|+.+-.+.- |.-   ++.-|+.||+|+.-    ..|.|+|++.+.+.++.+.|+||
T Consensus       426 v~AYl~IEkARF~-~rL~v~i~id~~l~~~~i-P~f---ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDn  500 (557)
T COG3275         426 VNAYLSIEKARFG-DRLDVVIDIDEELRQVQI-PSF---ILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDN  500 (557)
T ss_pred             HHHHHHHHHHHCC-CCEEEEEECCHHHHHCCC-CHH---HHHHHHHHHHHHCCCCHHCCCCEEEEEEEECCEEEEEEECC
T ss_conf             9999989986448-844799946877753368-616---67788888887536444208817999998088389999418


Q ss_pred             CCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEEEECC
Q ss_conf             89789778654148837626898888566379999999996198---699997889943999997347
Q gi|255764476|r  727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG---HVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       727 G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG---~I~v~S~~G~Gttf~v~lP~~  791 (792)
                      |.||+|+                ...|+|+||+.|++=+++|=|   -+.++|.+..||+++|++|-.
T Consensus       501 g~li~p~----------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~  552 (557)
T COG3275         501 GGLIQPD----------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQ  552 (557)
T ss_pred             CCCCCCC----------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCC
T ss_conf             8776997----------------788987178899999998648210313786167786899994476


No 64 
>pfam00512 HisKA His Kinase A (phosphoacceptor) domain. dimerization and phosphoacceptor domain of histidine kinases.
Probab=99.41  E-value=8.7e-13  Score=105.45  Aligned_cols=65  Identities=45%  Similarity=0.748  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999996666322589999999997357778899899999999999999999999999999885149
Q gi|255764476|r  569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG  636 (792)
Q Consensus       569 k~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG  636 (792)
                      |++|+++|||||||||++|.|++++|....   .++++++|++.|.+++.++..+|+++|+++|+++|
T Consensus         2 k~~f~~~isHelrtPL~~i~~~~~~l~~~~---~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~e~g   66 (66)
T pfam00512         2 KSEFLANLSHELRTPLTAIRGYLELLLDTE---LSEEQREYLETILRSAERLLRLINDLLDLSRIEAG   66 (66)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             889999872987184888874889988723---27999999997689999999999999999865489


No 65 
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.34  E-value=3.9e-09  Score=80.46  Aligned_cols=185  Identities=16%  Similarity=0.273  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf             99996666322589999999997357778899899999999999999999999999999885149830002330699999
Q gi|255764476|r  572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL  651 (792)
Q Consensus       572 F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i  651 (792)
                      .+.-.--|+-.-.|+|.--+.+.+.-.  + ++..+.....|.+-+-+.-.-+..+|.--|      +-...+..+...+
T Consensus       306 vARELHDeIGQnITAIr~Qa~ivkR~~--~-~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai  376 (497)
T COG3851         306 VARELHDEIGQNITAIRTQAGIVKRAA--D-NAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAI  376 (497)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCCHHHHH
T ss_conf             999989986460789999999998657--9-777887889999999899999999987159------7322225789999


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCC----CEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECC
Q ss_conf             99999999999848968999956986----08998789999999999886775388868899999987998999999788
Q gi|255764476|r  652 NEVKQSIATKMHENNIRIKVISDGKL----GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG  727 (792)
Q Consensus       652 ~~~~~~~~~~~~~~~i~l~~~~~~~~----~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G  727 (792)
                      ...+..++  +.+.||...++...+.    +..+.-   |-.+...++.|-+|++. .+.|+|.....+..+.++|+|||
T Consensus       377 ~~l~~Em~--~~ergihcq~~~~~n~~~ldet~rvT---LyRl~QE~LNNI~KHA~-AS~V~i~l~~~~e~l~Lei~DdG  450 (497)
T COG3851         377 RSLLREME--LEERGIHCQLDWRINETALDETQRVT---LYRLCQELLNNICKHAD-ASAVTIQLWQQDERLMLEIEDDG  450 (497)
T ss_pred             HHHHHHHH--HHHCCEEEEEECCCCCCCCCCCEEEE---HHHHHHHHHHHHHHCCC-CCEEEEEEEECCCEEEEEEECCC
T ss_conf             99999852--54456279870566766788543772---89999999999975002-26279999517818999982588


Q ss_pred             CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             978977865414883762689888856637999999999619869999788994399999734
Q gi|255764476|r  728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       728 ~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                      +|+|+...                 =+|+||-=-+.=|.+.||+..++|  -+||++.|.||-
T Consensus       451 ~Gl~~~~~-----------------v~G~Gl~GmrERVsaLGG~l~lss--q~GTrviVnLPq  494 (497)
T COG3851         451 SGLPPGSG-----------------VQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLPQ  494 (497)
T ss_pred             CCCCCCCC-----------------CCCCCCCHHHHHHHHHCCCEEEEE--CCCCEEEEECCH
T ss_conf             67899998-----------------567572008999997478258874--368589994603


No 66 
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=99.23  E-value=5.5e-11  Score=93.14  Aligned_cols=65  Identities=45%  Similarity=0.756  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999996666322589999999997357778899899999999999999999999999999885149
Q gi|255764476|r  569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG  636 (792)
Q Consensus       569 k~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG  636 (792)
                      +.+|+++|||||||||++|+|++++|...   .+++++.+|++.|.+++.++..+|+++|++++++.|
T Consensus         2 ~~~~~~~isHelrtPL~~i~~~~~~l~~~---~~~~~~~~~~~~i~~~~~~~~~li~~il~~sr~~~~   66 (66)
T smart00388        2 KREFLANLSHELRTPLTAIRGYLELLEDT---ELSEEQREYLETILRSAERLLRLINDLLDLSRIEAG   66 (66)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88999997698708188899998865302---799999999998899999999999999999873699


No 67 
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.21  E-value=5.7e-09  Score=79.33  Aligned_cols=180  Identities=16%  Similarity=0.196  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---HHHHHHHHHHHHH
Q ss_conf             5899999999973577788998999999999999999999999999998851498300023306---9999999999999
Q gi|255764476|r  583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV---LNDLLNEVKQSIA  659 (792)
Q Consensus       583 PLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vd---l~~~i~~~~~~~~  659 (792)
                      -|-+..-..++.......|   ++ .-...|.+++.+|..-|+.+..+|.      .|.+..+|   |...++.   +++
T Consensus       265 ~LVs~k~~lela~~ql~~p---~~-~a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~---L~~  331 (459)
T COG4564         265 NLVSVKCALELAARQLNPP---KG-GAHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEA---LLE  331 (459)
T ss_pred             HHHHHHHHHHHHHCCCCCC---CC-CCCHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHH---HHH
T ss_conf             7799999999996267799---88-8750156678999989999998502------357455544307999999---999


Q ss_pred             HHHHHCCCEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHH
Q ss_conf             9998489689999569860899-878999999999988677538886889999998799899999978897897786541
Q gi|255764476|r  660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV  738 (792)
Q Consensus       660 ~~~~~~~i~l~~~~~~~~~~v~-~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~ri  738 (792)
                      +.-...++.+++..+.....+. .-.+-|-.|...-++|-=+++ ..-+|+|.....++.+.+.|+|||+|++.....  
T Consensus       332 ~f~~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~--  408 (459)
T COG4564         332 DFKERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL--  408 (459)
T ss_pred             HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCEEEEEECCCCCCCCHHHC--
T ss_conf             86436683799970578644782788899999999987788606-871799986157760699982389985616531--


Q ss_pred             CCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf             48837626898888566379999999996198699997889943999997347
Q gi|255764476|r  739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK  791 (792)
Q Consensus       739 F~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~  791 (792)
                              .  +  -.||||-=-+.=++..||+..|+|.|. ||..++.||-.
T Consensus       409 --------~--~--~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~  448 (459)
T COG4564         409 --------Q--K--RHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLD  448 (459)
T ss_pred             --------C--C--CCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEEECCH
T ss_conf             --------6--7--556451009999997486589975698-72799981404


No 68 
>PRK10060 RNase II stability modulator; Provisional
Probab=99.19  E-value=1.2e-08  Score=77.08  Aligned_cols=176  Identities=16%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCE--EEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             894678989999999985396589999868972--999830455754899874010689999999999999999999999
Q gi|255764476|r  119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC--AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK  196 (792)
Q Consensus       119 l~p~~a~~l~~ai~~l~~~g~~f~l~~~t~~g~--~i~~~Gr~~g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr  196 (792)
                      |.|+.|.+++    .+-.--.+..+++. .-|.  .++..||..-..-+..      ..........-.+.+..+.+.-.
T Consensus        46 ~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~lAa  114 (663)
T PRK10060         46 LSPEQAARIR----ELTGITSSLMMTLT-LFGSPLSVHLVGRKINKREWAG------TASAWHDTPSVARDLSHGLSFAE  114 (663)
T ss_pred             CCHHHHHHHH----HHHHEEEEEEEEEE-ECCCEEEEEEECCEECCCCCCC------CHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             6888999888----66410006899877-5384026898401303453353------02320383778999998879999


Q ss_pred             HHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCC-----HHHHHHHHHHCCCCCEEEEEEEE-E
Q ss_conf             998516800589815992898525789873677877566101585-3389-----67899998612578703457888-6
Q gi|255764476|r  197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFK-----EEIKKRMISSSALEKNFCETVST-L  269 (792)
Q Consensus       197 ~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~-----~~~~~~~~~~~~~~~~~~~~~~~-~  269 (792)
                      .+++.++++|.+.|.+|+|+.||+||.+++   ||..+++++++. .++.     ...+..++.....+..|+.+++. .
T Consensus       115 ~Vfe~a~egI~ItD~~~~I~~vN~af~~iT---Gy~~~eviG~n~~~l~~s~~~~~~~~~~~~~~l~~~~~w~gE~w~r~  191 (663)
T PRK10060        115 QVVSEANSVIVILDSRGNIQRFNRLCEEYT---GLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWIKT  191 (663)
T ss_pred             HHHHCCCCEEEEECCCCCEEEEHHHHHHHH---CCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             998545864999979999887867977886---89999918998799835755448899999999974981898888740


Q ss_pred             ECCEEEEEEEEE-EECCCC-----EEEEEEEHHHHHHHHHHHHHH
Q ss_conf             569078999997-632895-----299983045899988788999
Q gi|255764476|r  270 EHGNNKSYKIVR-VLNSFG-----EAGIAIDVSKEITVNDQLTHT  308 (792)
Q Consensus       270 ~~G~rr~~~v~~-~~~~~G-----~~Gia~DITErk~ae~aLrr~  308 (792)
                      ++|++.+..... +....|     .+++..||||+|++|++|+..
T Consensus       192 k~G~~~~~~~~~~v~~~~~~~~~~~i~~f~DITe~k~~ee~l~~l  236 (663)
T PRK10060        192 RKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRIL  236 (663)
T ss_pred             CCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHH
T ss_conf             589645798878776078970699999888804899999999987


No 69 
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.10  E-value=4e-10  Score=87.25  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=56.3

Q ss_pred             HHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHH----HHHHHHHCCCCCEEEEEEEEEECCE
Q ss_conf             85168005898159928985257898736778775661015853-389678----9999861257870345788865690
Q gi|255764476|r  199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-LFKEEI----KKRMISSSALEKNFCETVSTLEHGN  273 (792)
Q Consensus       199 lda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~G~  273 (792)
                      +|++|++||++|++|+++++|++|+++++   ++.++.+++... ++.+..    ..........+...........+|.
T Consensus         1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g---~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   77 (110)
T pfam08448         1 LDSLPDALAVLDPDGRVRYANAAAAELFG---LPPEELLGKTLAELLPPEDAARLERALRRALEGEEPIDFLEELLLNGE   77 (110)
T ss_pred             CCCCCHHHEEECCCCCEEEEEHHHHHHCC---CCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf             99857353799499969999347466709---898998095121006803456677789999738955886643025885


Q ss_pred             EEEEEEEEEECCC------CEEEEEEEHHHHHH
Q ss_conf             7899999763289------52999830458999
Q gi|255764476|r  274 NKSYKIVRVLNSF------GEAGIAIDVSKEIT  300 (792)
Q Consensus       274 rr~~~v~~~~~~~------G~~Gia~DITErk~  300 (792)
                      .+|+.++..|+.+      |.++++.||||||+
T Consensus        78 ~~~~~~~~~pi~d~~G~~~g~v~~~~DITerKq  110 (110)
T pfam08448        78 ERHYELRLTPLRDPDGEVIGVLVISRDITERRR  110 (110)
T ss_pred             CEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC
T ss_conf             200043576689899999999999998833129


No 70 
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.09  E-value=1.2e-08  Score=77.09  Aligned_cols=130  Identities=16%  Similarity=0.210  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHHHHH
Q ss_conf             6899999999999999999999999985168005898159928985257898736778775661015853-389678999
Q gi|255764476|r  173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-LFKEEIKKR  251 (792)
Q Consensus       173 ~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~~~~  251 (792)
                      +..+-..+.+.+.++|....++|+..++++|+.|.+.|.+|+|.|||++..++++   +..++.++.... ++..+....
T Consensus        78 ~l~~~~~~~~~~~~~l~~~~~rfr~~~ealpDavvv~d~~g~I~~~N~aAe~l~G---~~~~~~~G~~I~~Lir~p~f~~  154 (431)
T PRK11006         78 GLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLG---LRWPEDNGQNILNLLRYPEFTQ  154 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHC---CCCHHHCCCCHHHHHCCHHHHH
T ss_conf             9999999879999999999999999996489769999899958835699999838---9983326997789808845999


Q ss_pred             HHHHCCCCCEEEEEEEEEECCEEEEEEEEEEECCCC-EEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf             986125787034578886569078999997632895-29998304589998878899999
Q gi|255764476|r  252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG-EAGIAIDVSKEITVNDQLTHTYE  310 (792)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~G~rr~~~v~~~~~~~G-~~Gia~DITErk~ae~aLrr~~e  310 (792)
                      .....    .+...+.... +..+.+++...|...| ..-+++|||++++.|+..+.+..
T Consensus       155 ~~~~~----~~~~p~~~~~-~~~~~le~~~~p~~~~~~llv~rDiT~~~~lE~~R~dFvA  209 (431)
T PRK11006        155 YLKTR----DFSRPLNLVL-NNGRHLEIRVMPYTEGQLLMVARDVTQMHQLEGARRNFFA  209 (431)
T ss_pred             HHHCC----CCCCCEEEEC-CCCCEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             98626----6557625543-8874799999773799589999856599999999999998


No 71 
>KOG0787 consensus
Probab=99.08  E-value=6.4e-08  Score=72.11  Aligned_cols=182  Identities=16%  Similarity=0.253  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------EEEEECHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCC
Q ss_conf             9999999999999999999999998851498300------023306999999999999999984---8968999956986
Q gi|255764476|r  607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKL------NYSTIVLNDLLNEVKQSIATKMHE---NNIRIKVISDGKL  677 (792)
Q Consensus       607 ~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l------~~~~vdl~~~i~~~~~~~~~~~~~---~~i~l~~~~~~~~  677 (792)
                      +-+++.-..+--.+.-|+|+=+-+-.  .|+-+-      --...++..+|.++.+..+..-..   ..=++.+....++
T Consensus       174 qyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~  251 (414)
T KOG0787         174 QYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL  251 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHEEC--CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             99999999988999999865552002--7999876644331799999999999999999999986337970675376667


Q ss_pred             CEEEECHHHHHHHHHHHHHHHHHCCC----CCC----EEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCC
Q ss_conf             08998789999999999886775388----868----8999999879989999997889789778654148837626898
Q gi|255764476|r  678 GSFVADRQRLLQIFSKILSNAMDFSS----KGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG  749 (792)
Q Consensus       678 ~~v~~D~~rL~QVl~NLl~NAik~~~----~gg----~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~  749 (792)
                      ..-+.=|.-|.-++..|+.||..++-    ..+    .|.|.+...++++.|.++|.|-|||.++.+|+|+--+++.+..
T Consensus       252 ~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~  331 (414)
T KOG0787         252 SFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAP  331 (414)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             67604561899999999999999999974448888998599986388635899713789968057899986612568898


Q ss_pred             --------CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             --------88856637999999999619869999788994399999734
Q gi|255764476|r  750 --------QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       750 --------~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                              .-.|-|-||+|+|-..+..||.+.+.|=.|-||-+.++|-+
T Consensus       332 ~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~  380 (414)
T KOG0787         332 SSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKA  380 (414)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEECC
T ss_conf             7788776766655568737999999948870578520354426899526


No 72 
>PRK10060 RNase II stability modulator; Provisional
Probab=99.06  E-value=6.8e-09  Score=78.80  Aligned_cols=208  Identities=16%  Similarity=0.151  Sum_probs=109.8

Q ss_pred             HCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf             16800589815992898525789873677877566101585338967899998612578703457888656907899999
Q gi|255764476|r  201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV  280 (792)
Q Consensus       201 a~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rr~~~v~  280 (792)
                      ..+-|+|....|...+...+     ++  +..    ..... .+.+....+++....  -...-.+....-|+--.+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~-----~~--~~~----~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   80 (663)
T PRK10060         15 GTHSPYWRLAEDSNVLELSA-----TE--ETE----TNVTV-ALSPEQAARIRELTG--ITSSLMMTLTLFGSPLSVHLV   80 (663)
T ss_pred             CCCCCCEEECCCCCEEEEEC-----CC--CCC----CCCEE-ECCHHHHHHHHHHHH--EEEEEEEEEEECCCEEEEEEE
T ss_conf             89997055216777168633-----57--878----88311-068889998886641--000689987753840268984


Q ss_pred             EEECC-CCEEEEE---EEHH-HHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHH
Q ss_conf             76328-9529998---3045-89998878899999984308959998489808985368885509997896049987999
Q gi|255764476|r  281 RVLNS-FGEAGIA---IDVS-KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL  355 (792)
Q Consensus       281 ~~~~~-~G~~Gia---~DIT-Erk~ae~aLrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~  355 (792)
                      -.... .--+|++   -|-. -....+++|+-....+++.++||.|.|++++++.+|++|+++.||+.+.+.|+..+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lAa~Vfe~a~egI~ItD~~~~I~~vN~af~~iTGy~~~eviG~n~~~l~  160 (663)
T PRK10060         81 GRKINKREWAGTASAWHDTPSVARDLSHGLSFAEQVVSEANSVIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQSVFKLF  160 (663)
T ss_pred             CCEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHHHH
T ss_conf             01303453353023203837789999988799999985458649999799998878679778868999991899879983


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-CCCEEEE-CCCCCEEEEE---EEECCCCC----EEEEECCHHHHHHHH
Q ss_conf             9989754777664657889999998762467-6502688-7898189999---73569986----899945957999999
Q gi|255764476|r  356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWH-LPNGQTLHVI---VTSNPRGG----TIWMFENLTVQVDLE  426 (792)
Q Consensus       356 ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~-~~~~~w~-l~DGr~l~v~---~~~~p~Gg----~~~~~~DITE~~~le  426 (792)
                           ..+.  +...|.   ...-..++... =..+.|. ..+|..+...   ......|+    ++.+|.||||+|+.|
T Consensus       161 -----~s~~--~~~~~~---~~~~~~l~~~~~w~gE~w~r~k~G~~~~~~~~~~v~~~~~~~~~~~i~~f~DITe~k~~e  230 (663)
T PRK10060        161 -----MSRR--EAAASR---RNIRGFFRSGNAYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQ  230 (663)
T ss_pred             -----CCCC--CCHHHH---HHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHH
T ss_conf             -----5755--448899---999999974981898888740589645798878776078970699999888804899999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|255764476|r  427 TKYNTL  432 (792)
Q Consensus       427 ~~~~~l  432 (792)
                      ++...+
T Consensus       231 e~l~~l  236 (663)
T PRK10060        231 ERLRIL  236 (663)
T ss_pred             HHHHHH
T ss_conf             999987


No 73 
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=99.05  E-value=6.1e-10  Score=85.95  Aligned_cols=63  Identities=43%  Similarity=0.637  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999666632258999999999735777889989999999999999999999999999988
Q gi|255764476|r  568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT  632 (792)
Q Consensus       568 lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~  632 (792)
                      .+.+|++++||||||||++|.|+++++.....  .++.+.+|++.|.++++++..+|+++|++++
T Consensus         3 ~~~~~~a~iaHelrtPL~~i~~~~~~l~~~~~--~~~~~~~~~~~i~~~~~~l~~lv~~~l~~~~   65 (65)
T cd00082           3 AKGEFLANVSHELRTPLTAIRGALELLEEELL--DDEEQREYLERIREEAERLLRLINDLLDLSR   65 (65)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHCCHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             59999998729870488888601489885668--8699999999999999999999999998609


No 74 
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.01  E-value=9.5e-09  Score=77.79  Aligned_cols=135  Identities=13%  Similarity=0.108  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCC-CCC-CCC---HHH
Q ss_conf             899999999999999999999999985168005898159928985257898736778775661015-853-389---678
Q gi|255764476|r  174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRK-LFK---EEI  248 (792)
Q Consensus       174 ~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~-~~~-ll~---~~~  248 (792)
                      .++++..++..+++|.++....++|+|++|.|+|++|.+|+++.||.+|+..+...... ...+.. ..+ .+.   ...
T Consensus       557 L~r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~  635 (1197)
T PRK09959        557 LLRSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYK-NAMLPLENSESPFKDVFSNT  635 (1197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHH-HCCCCCCCCCCHHHHHHHHH
T ss_conf             99999999999999998899999998369987699825561224118889875231444-21356532222156777777


Q ss_pred             HHHHHHHCCCCCEEEEEEEEEECC-EEE----EEEEEEEECC--CCEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf             999986125787034578886569-078----9999976328--9529998304589998878899999
Q gi|255764476|r  249 KKRMISSSALEKNFCETVSTLEHG-NNK----SYKIVRVLNS--FGEAGIAIDVSKEITVNDQLTHTYE  310 (792)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~G-~rr----~~~v~~~~~~--~G~~Gia~DITErk~ae~aLrr~~e  310 (792)
                      .+........... ..+...+.+| +.|    |......|..  .+..|.-+||||+|+.|++|+..++
T Consensus       636 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~  703 (1197)
T PRK09959        636 HEVTAETKENRTI-YTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERN  703 (1197)
T ss_pred             HHHHHHHHHCCCC-CCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHHH
T ss_conf             8998753101210-0014530577542367753100037644440101154641289999999999999


No 75 
>PRK13559 hypothetical protein; Provisional
Probab=98.96  E-value=2.7e-08  Score=74.68  Aligned_cols=112  Identities=14%  Similarity=0.108  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHCCCCEEEECC---CCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC-----HHHHHHHHHHCCCCCEE
Q ss_conf             999999998516800589815---9928985257898736778775661015853389-----67899998612578703
Q gi|255764476|r  191 HISVFKVLFDSLDFLVWHRDQ---AGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNF  262 (792)
Q Consensus       191 ~~~~lr~llda~P~~vw~~D~---dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~-----~~~~~~~~~~~~~~~~~  262 (792)
                      +...|...++..++++.+.|+   |..|+|+|+||++++   ||+.++++++++.++.     +....++..+...+.++
T Consensus        43 ~~~~~~~a~~~~r~a~~itd~~~~d~PIiy~N~aF~~lT---GYs~~EviGrncrfLqGp~t~~~~v~~ir~ai~~~~~~  119 (363)
T PRK13559         43 SGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLT---GYAAEEVVGRNCRFLQGAGTDPAAVAKIRAAIAAERVV  119 (363)
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCCCCCEEEECHHHHHHH---CCCHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf             314799999747743899689999998899887999763---98979984999241089999989999999999839946


Q ss_pred             EEEEE-EEECCEEEEEEEEEEECC--CCE----EEEEEEHHHHHHHHHHH
Q ss_conf             45788-865690789999976328--952----99983045899988788
Q gi|255764476|r  263 CETVS-TLEHGNNKSYKIVRVLNS--FGE----AGIAIDVSKEITVNDQL  305 (792)
Q Consensus       263 ~~~~~-~~~~G~rr~~~v~~~~~~--~G~----~Gia~DITErk~ae~aL  305 (792)
                      ...+. ..++|...|..++..|+.  .|.    +|+..||||+++.+.+.
T Consensus       120 ~~el~nyrKDGs~fwn~l~isPV~D~~G~v~~fig~q~DvTd~~~~~a~e  169 (363)
T PRK13559        120 VVELLNYRKDGSPFWNALHLGPIYDEDGKLLYFFGSQWDVTDIRAVRALE  169 (363)
T ss_pred             EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHH
T ss_conf             99999982699824776898887989997999999998515542045589


No 76 
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.94  E-value=5.2e-08  Score=72.75  Aligned_cols=119  Identities=14%  Similarity=0.167  Sum_probs=90.3

Q ss_pred             HHHHHHHHHCCCCEEEEC---CCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC-----HHHHHHHHHHCCCCCEEEE
Q ss_conf             999999851680058981---59928985257898736778775661015853389-----6789999861257870345
Q gi|255764476|r  193 SVFKVLFDSLDFLVWHRD---QAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFCE  264 (792)
Q Consensus       193 ~~lr~llda~P~~vw~~D---~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~-----~~~~~~~~~~~~~~~~~~~  264 (792)
                      +.-...+|-.|.+|-+.|   ++.+++|+|.+|.+++   |+...++++++..++.     +.....++.....+..+..
T Consensus       158 ~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eit---Gy~~~e~~g~~~r~lq~~~~~~e~~~~~~~ai~~~~~~~v  234 (674)
T PRK13558        158 RLKEQALDEAPIGITISDATDPEEPIIYINDSFEDIT---GYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQV  234 (674)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHC---CCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             9887566405725998468888874388601236531---8981786497401210688880579999999755886334


Q ss_pred             EEE-EEECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf             788-8656907899999763289--5----299983045899988788999999843
Q gi|255764476|r  265 TVS-TLEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTYEILHN  314 (792)
Q Consensus       265 ~~~-~~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~e~Ld~  314 (792)
                      ... ...+|.-+|-.+...|+.+  |    ++|+..||||||++|++|++.+++|++
T Consensus       235 e~r~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~  291 (674)
T PRK13558        235 VLRNYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDR  291 (674)
T ss_pred             EEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             533314688378741245521057885899986214477889999999986889999


No 77 
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.93  E-value=1.2e-07  Score=70.19  Aligned_cols=121  Identities=12%  Similarity=0.135  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEC---CCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             988788999999843089599984---89808985368885509997896049987999998975477766465788999
Q gi|255764476|r  300 TVNDQLTHTYEILHNLTVAIAIFD---QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE  376 (792)
Q Consensus       300 ~ae~aLrr~~e~Ld~l~~~v~ifd---~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~  376 (792)
                      .++.+++.....+|..|.+|++-|   ++..+.|+|.+|..+|||+...+.+.+..  ++.   ....-|+.  +.    
T Consensus       152 ~~~~e~~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r--~lq---~~~~~~e~--~~----  220 (674)
T PRK13558        152 TVESERRLKEQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHR--FLQ---GPKTNEDR--VA----  220 (674)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHH--HHC---CCCCCHHH--HH----
T ss_conf             78999998875664057259984688888743886012365318981786497401--210---68888057--99----


Q ss_pred             HHHHHHHCCCC--CCEEEECCCCCEEEEEEEECC----CCCEEE---EECCHHHHHHHHHHHHH
Q ss_conf             99987624676--502688789818999973569----986899---94595799999999999
Q gi|255764476|r  377 NIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNP----RGGTIW---MFENLTVQVDLETKYNT  431 (792)
Q Consensus       377 ~~~~~~~~~~~--~~~~w~l~DGr~l~v~~~~~p----~Gg~~~---~~~DITE~~~le~~~~~  431 (792)
                      +.....-..++  .+.--+.+||..++...+-.|    +|-++.   +-+||||||+.|+.++.
T Consensus       221 ~~~~ai~~~~~~~ve~r~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~  284 (674)
T PRK13558        221 EFWTAITEDHDTQVVLRNYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQG  284 (674)
T ss_pred             HHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             9999975588633453331468837874124552105788589998621447788999999998


No 78 
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=98.88  E-value=1.3e-07  Score=69.94  Aligned_cols=115  Identities=13%  Similarity=0.111  Sum_probs=71.2

Q ss_pred             HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999843089599984898089853688855099978960499879999989754777664657889999998762467
Q gi|255764476|r  307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE  386 (792)
Q Consensus       307 r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~  386 (792)
                      ..+..|+++++||..+|.++++..+|+++.+|||++.+.+.++|....+          |. .++...-.+.+.......
T Consensus       262 ~~e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~~~~l~----------~~-~~~~~~~~~~l~~~~~~~  330 (607)
T PRK11360        262 LNELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQPYSMLF----------DN-TQFYSPVLDTLEHGTEHV  330 (607)
T ss_pred             HHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHC----------CC-HHHHHHHHHHHHCCCCCC
T ss_conf             8999986104669999799949998389999858797898596799957----------95-767799999985377421


Q ss_pred             CCCEEEECCCCC-EEEEEEEE--CCCC---CEEEEECCHHHHHHHHHHHHHH
Q ss_conf             650268878981-89999735--6998---6899945957999999999999
Q gi|255764476|r  387 THKDTWHLPNGQ-TLHVIVTS--NPRG---GTIWMFENLTVQVDLETKYNTL  432 (792)
Q Consensus       387 ~~~~~w~l~DGr-~l~v~~~~--~p~G---g~~~~~~DITE~~~le~~~~~l  432 (792)
                      ..+..+..+||. .+.+...|  ..+|   |.+.+|+||||++++|++....
T Consensus       331 ~~~~~~~~~~~~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~~  382 (607)
T PRK11360        331 ALEISFPGRDRTIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMARA  382 (607)
T ss_pred             CEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHH
T ss_conf             2489960588349999998535768985889999999577899999999999


No 79 
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.85  E-value=1.9e-08  Score=75.69  Aligned_cols=99  Identities=18%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             HHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHH----HHHHHHHCCCCC-EEEEE-E
Q ss_conf             999998516800589815992898525789873677877566101585-3389678----999986125787-03457-8
Q gi|255764476|r  194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI----KKRMISSSALEK-NFCET-V  266 (792)
Q Consensus       194 ~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~----~~~~~~~~~~~~-~~~~~-~  266 (792)
                      +|++++|++|++||+.|.+|+++++|+++++++   |++.++.+++.. +++.+..    ..........+. ..... .
T Consensus         2 r~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~---G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   78 (112)
T pfam00989         2 DLRAILESLPDGIFVVDEDGRILYVNAAAEELL---GLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVS   78 (112)
T ss_pred             HHHHHHHHHHHHEEEECCCCCEEEECCCCCCCC---CCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             799999834246199989999999916533225---86366743752012457534399999999999819976887765


Q ss_pred             EEEECCEEEEEEEEEEECC--C---CEEEEEEEH
Q ss_conf             8865690789999976328--9---529998304
Q gi|255764476|r  267 STLEHGNNKSYKIVRVLNS--F---GEAGIAIDV  295 (792)
Q Consensus       267 ~~~~~G~rr~~~v~~~~~~--~---G~~Gia~DI  295 (792)
                      ....+|..+|+.++..|..  +   |.+++..||
T Consensus        79 ~~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI  112 (112)
T pfam00989        79 FRVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI  112 (112)
T ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf             2879998999999999999199999999999849


No 80 
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.83  E-value=9.4e-08  Score=71.00  Aligned_cols=96  Identities=19%  Similarity=0.269  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHH
Q ss_conf             99999999988677538---886889999998799899999978897897786541488376268988885663799999
Q gi|255764476|r  686 RLLQIFSKILSNAMDFS---SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE  762 (792)
Q Consensus       686 rL~QVl~NLl~NAik~~---~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~  762 (792)
                      .++=++.--++|||+|.   ++.+.|.|.+...++.+.|.|+|+|+|++++....-..|+...+.-...+..||||.+.+
T Consensus        42 di~LAV~EA~tNaI~Hay~~~~~~~i~i~~~~~~~~l~i~V~D~G~gfD~~~~~~~~~P~~~~~~l~~~~~gGlGl~lI~  121 (158)
T PRK04069         42 DLKIAVSEACTNAVQHAYKEEEVGEINIRFEIYEDRLEIVVADNGDSFDYETTKSKIGPYDPSEPIDDLREGGLGLFLIE  121 (158)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHH
T ss_conf             89999999999999975156999479999999599999999991748795674324588888886111367874099999


Q ss_pred             HHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             9999619869999788994399999
Q gi|255764476|r  763 SFINLHGGHVSISSSDEGVTTINCR  787 (792)
Q Consensus       763 ~iVe~hgG~I~v~S~~G~Gttf~v~  787 (792)
                      +++.    .|.++|  +.||+++.+
T Consensus       122 ~lmD----eV~~~~--~~Gt~v~m~  140 (158)
T PRK04069        122 TLMD----DVTVYK--DSGVTVSMT  140 (158)
T ss_pred             HHCC----EEEEEE--CCCEEEEEE
T ss_conf             7525----589990--898299999


No 81 
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785    This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.81  E-value=2.3e-07  Score=68.32  Aligned_cols=266  Identities=16%  Similarity=0.150  Sum_probs=141.4

Q ss_pred             HHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCE-EEEE--E-ECCCC
Q ss_conf             860699789998179970014134123218983202344432118946789899999999853965-8999--9-86897
Q gi|255764476|r   75 LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLV--A-ETQND  150 (792)
Q Consensus        75 ll~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l~~~g~~-f~l~--~-~t~~g  150 (792)
                      |+...+++-+..|.+|---++.-+-+..+.....+=.--++...+.+++-..++..+....++|.+ |...  . ..+.+
T Consensus         1 l~~~~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~   80 (453)
T TIGR02040         1 LLEAAADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSD   80 (453)
T ss_pred             CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf             97764770355517870776442885524141302458844441357789999999971468888577776654117999


Q ss_pred             E-----EEE-----EEEEEECCEEEEE-EEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCC
Q ss_conf             2-----999-----8304557548998-7401068999999999----999999999999999851680058981-5992
Q gi|255764476|r  151 C-----AIK-----IEGRVSGSCAFLR-ILSLDGIYSELAETTL----KCKKLSNHISVFKVLFDSLDFLVWHRD-QAGD  214 (792)
Q Consensus       151 ~-----~i~-----~~Gr~~g~~a~~r-~~d~s~~~~~~ael~~----~~~~L~~~~~~lr~llda~P~~vw~~D-~dGr  214 (792)
                      .     ++-     .+|...|-.++=| ++.++++++.+.+.+.    ...++++-|.+||.+||-..+||.+.| .+||
T Consensus        81 ~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~~st~r  160 (453)
T TIGR02040        81 LELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVDVSTGR  160 (453)
T ss_pred             CCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf             72440346761678788887358884652478999999999987888879998667544433541148867998536534


Q ss_pred             EEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHHHHHHH----HHCCCCCEEEEEEEEEECCEEEEE-EEEEEECCCCE
Q ss_conf             8985257898736778775661015853-38967899998----612578703457888656907899-99976328952
Q gi|255764476|r  215 ILWANISYKKNTETEGIVFQKAIGESRK-LFKEEIKKRMI----SSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSFGE  288 (792)
Q Consensus       215 i~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~rr~~-~v~~~~~~~G~  288 (792)
                      |+-+|++-..+.+..+...+..+|..+. -++...++...    .....+..-..++.. .++..++. .++.+.-.. .
T Consensus       161 ileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~l~~~l~~~~atg~A~~~~i~l-~~~~~~~~v~~s~~r~~~-~  238 (453)
T TIGR02040       161 ILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREELELLLREVRATGKAAEVRILL-AESRKELLVVVSLFRQDS-E  238 (453)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCEEEEEEEEECCC-C
T ss_conf             77867999998502677501231113431466454368999998643015778717874-578873178877640236-6


Q ss_pred             EEEEE---EHHHHHHHHHHHH---HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCC
Q ss_conf             99983---0458999887889---999998430895999848980898536888550999
Q gi|255764476|r  289 AGIAI---DVSKEITVNDQLT---HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID  342 (792)
Q Consensus       289 ~Gia~---DITErk~ae~aLr---r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~  342 (792)
                      --+-+   -|-+..+.+....   -+..+++..|++|+..|.+|++.-+|.+|.+|..+.
T Consensus       239 ~~fL~~l~~~~~~~~~~~~~s~~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~s  298 (453)
T TIGR02040       239 SLFLVRLSPAGASAAVGDVLSENSMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVS  298 (453)
T ss_pred             CHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             410113031124467777667427899999742987999778873288889999898717


No 82 
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.74  E-value=2.8e-06  Score=60.84  Aligned_cols=50  Identities=14%  Similarity=0.054  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             89999999999999999999966663225899999999973577788998999
Q gi|255764476|r  555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS  607 (792)
Q Consensus       555 L~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~  607 (792)
                      ||||.+-..   -+...|+...|+....+...|..-+--+-..+..|-|-|+-
T Consensus       419 LReR~eDI~---~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVREL  468 (560)
T COG3829         419 LRERKEDIP---LLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVREL  468 (560)
T ss_pred             CCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf             233820189---99999999999872887666899999999868999609999


No 83 
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.73  E-value=1.9e-08  Score=75.71  Aligned_cols=41  Identities=32%  Similarity=0.516  Sum_probs=25.5

Q ss_pred             HHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCH
Q ss_conf             96203432899689848864058887828987894389838
Q gi|255764476|r  440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI  480 (792)
Q Consensus       440 ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~  480 (792)
                      +|+++++|.+++.||++.++|++|++++|++.+++.+++..
T Consensus         1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~   41 (110)
T pfam08448         1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLA   41 (110)
T ss_pred             CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCH
T ss_conf             99857353799499969999347466709898998095121


No 84 
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.69  E-value=7.7e-08  Score=71.57  Aligned_cols=103  Identities=15%  Similarity=0.246  Sum_probs=56.6

Q ss_pred             HHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             99996203432899689848864058887828987894389838898877763025611468899874026544311568
Q gi|255764476|r  437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG  516 (792)
Q Consensus       437 ~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~  516 (792)
                      +..+|+++++|.+++.+|++.++|+++++|+||+++++.+++..+.+...     +.......+...+.. .......+.
T Consensus         4 r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~e~   77 (112)
T pfam00989         4 RAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEE-----DDAEVAELLRQALLQ-GEESRGGEV   77 (112)
T ss_pred             HHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCC-----CHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             99998342461999899999999165332258636674375201245753-----439999999999981-997688776


Q ss_pred             EEEECCEEE--EEEEEEECCC--C--CEEEECCCC
Q ss_conf             999725038--8899997058--8--766312320
Q gi|255764476|r  517 TLELLSDSV--LEYSIIPLPN--A--QTMLTFVNV  545 (792)
Q Consensus       517 ~~~~~dG~~--~~~~~~pl~d--g--~~l~~~~DI  545 (792)
                      ++.++||+.  ++....|+.|  |  +.+.+++||
T Consensus        78 ~~~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI  112 (112)
T pfam00989        78 SFRVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI  112 (112)
T ss_pred             EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf             52879998999999999999199999999999849


No 85 
>TIGR00229 sensory_box PAS domain S-box; InterPro: IPR000014   PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in:  Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein.   PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0004871 signal transducer activity, 0007165 signal transduction.
Probab=98.67  E-value=3.8e-07  Score=66.87  Aligned_cols=111  Identities=17%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCC-CHH----HHHHHHHHCC-CC-CEEE
Q ss_conf             999999998516800589815992898525789873677877566101585338-967----8999986125-78-7034
Q gi|255764476|r  191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-KEE----IKKRMISSSA-LE-KNFC  263 (792)
Q Consensus       191 ~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll-~~~----~~~~~~~~~~-~~-~~~~  263 (792)
                      +++++++++++.|.++++.|.+|.++++|++|++.+   |+..++.++.....+ .+.    ....+..... .. ....
T Consensus         3 ~e~~~~~~~e~~~~~~~~~d~~g~~~~~n~~~~~~~---Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (130)
T TIGR00229         3 SEERYRAIFESSPDAIIVVDLEGNILYVNPAFEELF---GYSAEELLGRNVLELIPEEDREELRERIERLLETGEREPVS   79 (130)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHH---CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             589999986224542688705761575032577761---78758953875100027641468999998763267543201


Q ss_pred             EEEE---EEECCEEEEEEEEEEECC--C----CEEEEEEEHHHHHHHHHH
Q ss_conf             5788---865690789999976328--9----529998304589998878
Q gi|255764476|r  264 ETVS---TLEHGNNKSYKIVRVLNS--F----GEAGIAIDVSKEITVNDQ  304 (792)
Q Consensus       264 ~~~~---~~~~G~rr~~~v~~~~~~--~----G~~Gia~DITErk~ae~a  304 (792)
                      ....   ...+|..+|..+...|..  .    +..+++.|||++|.++++
T Consensus        80 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~~~~~~~d~t~~~~~~~~  129 (130)
T TIGR00229        80 EERRVLGRRKDGSEIWVEVSVSPIRDSNGGVLGVLGIVRDITERKEAEEA  129 (130)
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHC
T ss_conf             23466644378968899873010000137703677665211478998850


No 86 
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.67  E-value=2.1e-07  Score=68.66  Aligned_cols=16  Identities=31%  Similarity=0.270  Sum_probs=7.7

Q ss_pred             CCCCEEEEECHHHHHH
Q ss_conf             4898089853688855
Q gi|255764476|r  323 DQNRYLQFHNRSFVEL  338 (792)
Q Consensus       323 d~~~rl~~~N~a~~~l  338 (792)
                      |||+.+.++++.-..|
T Consensus       212 dPdG~~~vf~r~t~~l  227 (538)
T COG1389         212 DPDGNLVVFPRSTDKL  227 (538)
T ss_pred             CCCCCEEEECCCHHHC
T ss_conf             8998678713314117


No 87 
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310   Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=98.62  E-value=7.6e-07  Score=64.77  Aligned_cols=116  Identities=14%  Similarity=0.123  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCC-CCCCCHHHHHHHHHHCCC-CCE--EEE
Q ss_conf             9999999999851680058981599289852578987367787756610158-533896789999861257-870--345
Q gi|255764476|r  189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMISSSAL-EKN--FCE  264 (792)
Q Consensus       189 ~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~-~~ll~~~~~~~~~~~~~~-~~~--~~~  264 (792)
                      .+..++|+..+.++|++|.+.|.+|+|.|||++..++++..-   ++..+.. .+++..+.-..+-..... ..+  ..-
T Consensus         2 ~~~~~rf~~a~~AlPDavv~ld~~~~I~W~N~~A~~~LGl~~---p~D~Gq~i~~l~R~P~F~~yl~~~~~t~~p~~L~~   78 (339)
T TIGR02966         2 SALLSRFRAAAQALPDAVVVLDEEGQIEWCNKAAERLLGLRW---PDDLGQRITNLIRHPEFVEYLAAGRFTSEPEQLEL   78 (339)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCC---CHHHCCCHHHHCCCHHHHHHHHCCCCCCCCCCEEE
T ss_conf             468899999997589829997289837862148898627427---34507702121057679999733555578853110


Q ss_pred             EEEEEECCEEEEEEEEEEECCCCE-EEEEEEHHHHHHHHHHHHHHH
Q ss_conf             788865690789999976328952-999830458999887889999
Q gi|255764476|r  265 TVSTLEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTY  309 (792)
Q Consensus       265 ~~~~~~~G~rr~~~v~~~~~~~G~-~Gia~DITErk~ae~aLrr~~  309 (792)
                      .  .....+.+.+.+.-+|..++. .=++.|||+.++.|+--|-|.
T Consensus        79 ~--~~p~~~~~~l~~r~~PY~~~~~Ll~~RDvT~l~rLe~mRrDFV  122 (339)
T TIGR02966        79 P--DSPINEERVLEIRIMPYGEEQKLLVARDVTRLRRLEQMRRDFV  122 (339)
T ss_pred             C--CCCCCCCCEEEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHC
T ss_conf             4--6888866479999997569837999876368999986534311


No 88 
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194   This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.61  E-value=1.3e-07  Score=70.00  Aligned_cols=104  Identities=21%  Similarity=0.358  Sum_probs=85.0

Q ss_pred             EECCCCCEEEECHHHHHHHHHHHHHHHHH--CC-CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC
Q ss_conf             95698608998789999999999886775--38-8868899999987998999999788978977865414883762689
Q gi|255764476|r  672 ISDGKLGSFVADRQRLLQIFSKILSNAMD--FS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR  748 (792)
Q Consensus       672 ~~~~~~~~v~~D~~rL~QVl~NLl~NAik--~~-~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~  748 (792)
                      .++|.+-    .-..++.++..=++|||=  |- ..++.|.|++.-.+..+.++|.|+|+||  +.+++.-+|.||+++.
T Consensus        29 ~LDPT~~----El~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~~~~~~v~D~G~GI--~~lE~A~~PLyTskPe  102 (137)
T TIGR01925        29 QLDPTLE----ELTDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDDEVSITVRDEGIGI--ENLEEAREPLYTSKPE  102 (137)
T ss_pred             HCCCCHH----HHHHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECCEEEEEEEECCCCH--HHHHHHCCCCCCCCCC
T ss_conf             4287544----455554333223212053145637997789999960548999986467572--3378532664579987


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             888856637999999999619869999788994399999
Q gi|255764476|r  749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR  787 (792)
Q Consensus       749 ~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~  787 (792)
                      =.  =+|+|..|--.|..    .|.|+|++++||+....
T Consensus       103 LE--RSGMGFTvME~FMD----~~~v~S~~~~GT~I~~~  135 (137)
T TIGR01925       103 LE--RSGMGFTVMESFMD----DVEVDSEKEKGTKIILK  135 (137)
T ss_pred             CC--CCCCCEEEECCCCC----CEEEEECCCCCCEEEEE
T ss_conf             22--06786012111245----12686238998468875


No 89 
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.60  E-value=4.8e-07  Score=66.15  Aligned_cols=16  Identities=25%  Similarity=0.243  Sum_probs=7.5

Q ss_pred             CCCHHHH-HHHHHHHHH
Q ss_conf             3206899-998888999
Q gi|255764476|r  543 VNVTDSV-RAERALTEK  558 (792)
Q Consensus       543 ~DIT~~k-~~E~aL~e~  558 (792)
                      -|+.|-. .+..||++.
T Consensus       433 Ad~pEI~~EIrlAl~e~  449 (533)
T PRK04184        433 ADVPEIEKEIRLALMEA  449 (533)
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             37789999999999999


No 90 
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=98.58  E-value=2.5e-06  Score=61.20  Aligned_cols=113  Identities=18%  Similarity=0.222  Sum_probs=73.7

Q ss_pred             HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999843089599984898089853688855099978960499879999989754777664657889999998762467
Q gi|255764476|r  307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE  386 (792)
Q Consensus       307 r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~  386 (792)
                      ...+.||++++||+++|.++++.++|++++++||++.+.+.++|... ++..        ...+... ..+.+...+...
T Consensus         8 ~~~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~~~~-l~~~--------~~~~~~~-~~~~~~~~~~~~   77 (348)
T PRK11073          8 DAGQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTPLPE-LLSY--------FSLNIEL-MQESLQAGQGFT   77 (348)
T ss_pred             CHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHH-HHCC--------CCCCHHH-HHHHHHCCCCCC
T ss_conf             39999986607964998979701283999999785989985996899-8466--------5301899-999997389741


Q ss_pred             CCCEEEECCCCCE--EEEEEEECCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf             6502688789818--9999735699868999459579999999999
Q gi|255764476|r  387 THKDTWHLPNGQT--LHVIVTSNPRGGTIWMFENLTVQVDLETKYN  430 (792)
Q Consensus       387 ~~~~~w~l~DGr~--l~v~~~~~p~Gg~~~~~~DITE~~~le~~~~  430 (792)
                       .++..+..||+.  +.+...|.+++.++..+.|||+++++++...
T Consensus        78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~di~~~k~l~~e~~  122 (348)
T PRK11073         78 -DNEVTLVIDGRSHILSLTAQRLPEGMILLEMAPMDNQRRLSQEQL  122 (348)
T ss_pred             -CCEEEEEECCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHH
T ss_conf             -323999989969999999998258689999996279999999999


No 91 
>TIGR01052 top6b DNA topoisomerase VI, B subunit; InterPro: IPR005734   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils .   This entry represents subunit B of topoisomerase VI, a type IIB topoisomerase found predominantly in archaea, but also in a few eukayotes, such as the plant  Arabidopsis thaliana . This enzyme assembles as a heterotetramer, consisting of two A subunits required for DNA cleavage and two B subunits required for ATP hydrolysis. The B subunit is structurally similar to the ATPase domain of type IIA topoisomerases, but the A subunit is distinct, and instead shares homology with the Spo11 protein that mediates double-strand DNA breaks during meiotic recombination in eukaryotes . Therefore, though related to type IIA topoisomerases, topoisomerase VI may have a distinctive mechanism of action.   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=98.53  E-value=8.4e-07  Score=64.46  Aligned_cols=28  Identities=11%  Similarity=-0.030  Sum_probs=18.3

Q ss_pred             HHHHHHHHCCCC-EEEECCCCCEEEECHH
Q ss_conf             999998516800-5898159928985257
Q gi|255764476|r  194 VFKVLFDSLDFL-VWHRDQAGDILWANIS  221 (792)
Q Consensus       194 ~lr~llda~P~~-vw~~D~dGri~~vN~A  221 (792)
                      -+|...=+.|.. |-+.||||.+...|++
T Consensus       198 Ylrrt~~anPHA~I~l~~PdG~~~~F~R~  226 (662)
T TIGR01052       198 YLRRTAVANPHAKIVLVEPDGEIYVFPRS  226 (662)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCEEECCCC
T ss_conf             98998751864089988698637753663


No 92 
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=98.48  E-value=3.8e-06  Score=60.00  Aligned_cols=97  Identities=23%  Similarity=0.327  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHH
Q ss_conf             7899999999998867753888----688999999879989999997889789778654148837626898888566379
Q gi|255764476|r  683 DRQRLLQIFSKILSNAMDFSSK----GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL  758 (792)
Q Consensus       683 D~~rL~QVl~NLl~NAik~~~~----gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGL  758 (792)
                      |-.+++-++.-++.||++|+-+    .|.|.|.+...++.+.+.|.|.|+||.  ..++.+.|-++.....  ..-|+||
T Consensus        37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~~--~~~G~Gl  112 (146)
T COG2172          37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPGDTTAEGL--QEGGLGL  112 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEECCCCCC--CHHHHCCCCCCCCCCC--CCCCCCH
T ss_conf             99999999999998999976303899865999999709939999995798987--8888538888888753--2473137


Q ss_pred             HHHHHHHHHCCCEEEEEEECCC---CEEEEEE
Q ss_conf             9999999961986999978899---4399999
Q gi|255764476|r  759 SIVESFINLHGGHVSISSSDEG---VTTINCR  787 (792)
Q Consensus       759 siv~~iVe~hgG~I~v~S~~G~---Gttf~v~  787 (792)
                      .+.++++.    ++.+++.++.   +++++..
T Consensus       113 ~l~~~~~D----~~~~~~~~~~~~~~~~~~~~  140 (146)
T COG2172         113 FLAKRLMD----EFSYERSEDGRNRLTKITLR  140 (146)
T ss_pred             HHHHHHHE----EEEEEEECCCCEEEEEEEEC
T ss_conf             88862110----79999606985589999962


No 93 
>TIGR00229 sensory_box PAS domain S-box; InterPro: IPR000014   PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in:  Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein.   PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0004871 signal transducer activity, 0007165 signal transduction.
Probab=98.41  E-value=3.4e-06  Score=60.34  Aligned_cols=115  Identities=18%  Similarity=0.263  Sum_probs=70.4

Q ss_pred             HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHH-HHHHHHHCCCCCCCE
Q ss_conf             9999996203432899689848864058887828987894389838898877763025611468-899874026544311
Q gi|255764476|r  435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD-LFAAIITSFDDERKS  513 (792)
Q Consensus       435 ~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~r~~  513 (792)
                      ..+..+++.++++.+++.+|.+.++|+++++++||+.+++.++.... +...     ++..... .+.............
T Consensus         6 ~~~~~~e~~~~~~~~~d~~g~~~~~n~~~~~~~Gy~~~e~~g~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   79 (130)
T TIGR00229         6 RYRAIFESSPDAIIVVDLEGNILYVNPAFEELFGYSAEELLGRNVLE-LIPE-----EDREELRERIERLLETGEREPVS   79 (130)
T ss_pred             HHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCCCC-CCCC-----CHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             99998622454268870576157503257776178758953875100-0276-----41468999998763267543201


Q ss_pred             EEEEE--EECCEEEE--EEEEEECC--CCC---EEEECCCCHHHHHHHHHH
Q ss_conf             56899--97250388--89999705--887---663123206899998888
Q gi|255764476|r  514 LQGTL--ELLSDSVL--EYSIIPLP--NAQ---TMLTFVNVTDSVRAERAL  555 (792)
Q Consensus       514 ~~~~~--~~~dG~~~--~~~~~pl~--dg~---~l~~~~DIT~~k~~E~aL  555 (792)
                      ...++  .++||..+  .....|++  +|.   .+..+.|||++|+.|++|
T Consensus        80 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~~~~~~~d~t~~~~~~~~l  130 (130)
T TIGR00229        80 EERRVLGRRKDGSEIWVEVSVSPIRDSNGGVLGVLGIVRDITERKEAEEAL  130 (130)
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCC
T ss_conf             234666443789688998730100001377036776652114789988509


No 94 
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=98.32  E-value=1.6e-06  Score=62.65  Aligned_cols=37  Identities=11%  Similarity=0.068  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEE
Q ss_conf             9999999999999999998516800589815992898
Q gi|255764476|r  181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW  217 (792)
Q Consensus       181 l~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~  217 (792)
                      +|....++..-.+.++.+.=+-|..-|..-.+|+.++
T Consensus       160 LKs~~~E~~~I~~~v~~~AL~~P~I~f~l~~~~k~~~  196 (612)
T PRK00095        160 LKSEKTELGHIDDVVRRLALAHPDVAFTLTHNGKLVL  196 (612)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEE
T ss_conf             5798179999999999997517975899998999972


No 95 
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.31  E-value=2.3e-05  Score=54.69  Aligned_cols=146  Identities=13%  Similarity=0.111  Sum_probs=65.1

Q ss_pred             HHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHCCCCCEEEEEEEEEECCEE
Q ss_conf             9998516800589815992898525789873677877566101585-338967899998612578703457888656907
Q gi|255764476|r  196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNN  274 (792)
Q Consensus       196 r~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~G~r  274 (792)
                      +.+++.++.++.+.|....+..+|..+....+....   ..++... ++++....+...........  ..  .... ..
T Consensus         4 ~~~l~~~~~~~~vi~~~~~~~~~~~~a~~~~~~~~~---~~i~~~~~~i~~~~~~~~v~~~~~~~~~--~~--~~~~-~~   75 (560)
T COG3829           4 EGILKSILDGPVVIDKNTGIDVANALALAKRQKNAE---AVIGRPLREILETLGMERVEQSRDKELT--ER--LKLK-VK   75 (560)
T ss_pred             HHHHHHCCCCEEEEECCCCEEEECHHHHHHHHCCEE---EEECCCHHHHHCCCCCCEEECCCCCCEE--EE--EECC-CE
T ss_conf             445665046408997177547603377765105447---8742341111112586234106765201--35--5406-40


Q ss_pred             EEEEEEEEECCC-----CEEEEEEEHHHHHHHHHHH-----HHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHH
Q ss_conf             899999763289-----5299983045899988788-----999999843089599984898089853688855099978
Q gi|255764476|r  275 KSYKIVRVLNSF-----GEAGIAIDVSKEITVNDQL-----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA  344 (792)
Q Consensus       275 r~~~v~~~~~~~-----G~~Gia~DITErk~ae~aL-----rr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~  344 (792)
                      +..-+...|...     |+.-+..|++|.-..-++.     +.+...++.+.+++.+.|.+++++++|+++.+++|++++
T Consensus        76 ~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~~~~~gl~~e  155 (560)
T COG3829          76 RIVVVGKTPVDEQGRVVGVLEVFLDISEALELIEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKAYAKLLGLSPE  155 (560)
T ss_pred             EEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHH
T ss_conf             48981785241277444551254514989999999999999999999862567459986999689984778988399989


Q ss_pred             HHHCC
Q ss_conf             96049
Q gi|255764476|r  345 FLATN  349 (792)
Q Consensus       345 ~l~~~  349 (792)
                      .+.+.
T Consensus       156 ~~~gk  160 (560)
T COG3829         156 EVLGK  160 (560)
T ss_pred             HHCCC
T ss_conf             98197


No 96 
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785    This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.08  E-value=2.8e-05  Score=54.04  Aligned_cols=264  Identities=14%  Similarity=0.139  Sum_probs=138.9

Q ss_pred             HHHHCCCCEEEECCCCCEEE--ECHHHHHHHCCCCCCHHHHHCC-CCCCCCHHHHHHHHHHCCCCC-----EEEEEE-E-
Q ss_conf             98516800589815992898--5257898736778775661015-853389678999986125787-----034578-8-
Q gi|255764476|r  198 LFDSLDFLVWHRDQAGDILW--ANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSALEK-----NFCETV-S-  267 (792)
Q Consensus       198 llda~P~~vw~~D~dGri~~--vN~A~~~~~e~~~~~~~~~i~~-~~~ll~~~~~~~~~~~~~~~~-----~~~~~~-~-  267 (792)
                      |+...|+.-.+.|.+|-+.-  +|..  ++.   .....++.++ +.+++..+.++++........     .+.... + 
T Consensus         1 l~~~~~Dv~L~~d~~Gvvre~~~~~~--~~s---~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~   75 (453)
T TIGR02040         1 LLEAAADVTLLLDAEGVVREVALSND--ELS---AEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRF   75 (453)
T ss_pred             CCCCCCCCEEEECCCCCEEEEECCCC--CCC---HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             97764770355517870776442885--524---1413024588444413577899999999714688885777766541


Q ss_pred             EEECCEEEEEEEEEE--EC----CCCEEEEEEEHH---HHHH----HHHHH-----------HHHHHHHHHCCCCEEEEC
Q ss_conf             865690789999976--32----895299983045---8999----88788-----------999999843089599984
Q gi|255764476|r  268 TLEHGNNKSYKIVRV--LN----SFGEAGIAIDVS---KEIT----VNDQL-----------THTYEILHNLTVAIAIFD  323 (792)
Q Consensus       268 ~~~~G~rr~~~v~~~--~~----~~G~~Gia~DIT---Erk~----ae~aL-----------rr~~e~Ld~l~~~v~ifd  323 (792)
                      +...+..-.+..+.+  +.    +.|+..+..|.-   |.++    |+++.           .|++..|+-..++|.+.|
T Consensus        76 ~~P~~~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~  155 (453)
T TIGR02040        76 VLPSDLELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVD  155 (453)
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             17999724403467616787888873588846524789999999999878888799986675444335411488679985


Q ss_pred             -CCCEEEEECHHHHHHHCCCHH---HHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCE
Q ss_conf             -898089853688855099978---9604998799999897547776646578899999987624676502688789818
Q gi|255764476|r  324 -QNRYLQFHNRSFVELWEIDLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT  399 (792)
Q Consensus       324 -~~~rl~~~N~a~~~l~gl~~~---~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~~~~w~l~DGr~  399 (792)
                       .++|++-.|+++..|.|-...   -|.|.+--.++          + ..+......-.....-...+.+..-+|++++.
T Consensus       156 ~st~rileaN~~A~~lLg~~~~~rd~LvG~~~~~e~----------~-~~~~~~l~~~l~~~~atg~A~~~~i~l~~~~~  224 (453)
T TIGR02040       156 VSTGRILEANSAAAALLGAEGQRRDSLVGREFPQEL----------E-EREREELELLLREVRATGKAAEVRILLAESRK  224 (453)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCC----------C-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf             365347786799999850267750123111343146----------6-45436899999864301577871787457887


Q ss_pred             -EEEEEE-ECCCCCEEEEE--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH-HHH
Q ss_conf             -999973-56998689994--5957999999999999999999996203432899689848864058887828987-894
Q gi|255764476|r  400 -LHVIVT-SNPRGGTIWMF--ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE-NRL  474 (792)
Q Consensus       400 -l~v~~~-~~p~Gg~~~~~--~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~-~~l  474 (792)
                       +-|... ...++.-.++.  ..|-++...+....+- .+...++++.+++|.+.|.||+|.-+|.+|.+|..++. +.+
T Consensus       225 ~~~v~~s~~r~~~~~~fL~~l~~~~~~~~~~~~~s~~-sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v  303 (453)
T TIGR02040       225 ELLVVVSLFRQDSESLFLVRLSPAGASAAVGDVLSEN-SMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVSSKEAV  303 (453)
T ss_pred             CEEEEEEEEECCCCCHHHEEECCCCCCCCCCCCCCCH-HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf             3178877640236641011303112446777766742-789999974298799977887328888999989871775453


Q ss_pred             CCCC
Q ss_conf             3898
Q gi|255764476|r  475 SPGT  478 (792)
Q Consensus       475 ~~~~  478 (792)
                      .|++
T Consensus       304 ~G~~  307 (453)
T TIGR02040       304 RGRT  307 (453)
T ss_pred             CCCC
T ss_conf             1332


No 97 
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.02  E-value=0.00044  Score=45.86  Aligned_cols=105  Identities=11%  Similarity=-0.022  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCC-CCHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf             999999999851680058981599289852578987367787756610158533-8967899998612578703457888
Q gi|255764476|r  190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVST  268 (792)
Q Consensus       190 ~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~l-l~~~~~~~~~~~~~~~~~~~~~~~~  268 (792)
                      +++..|++++|++|+||+..|.+|+++++|+|.++.++   .+.++++++...- +....   .......+.+......+
T Consensus        77 r~~~~L~alLdsl~dgV~svD~~G~I~~~N~aa~~i~~---~~~~~~~G~~i~~~~~~~~---~~~~l~~~~~~~~~~~~  150 (513)
T PRK10820         77 REHLALSALLEALPEPVLSIDMKSKVELANPASCQLFG---QSEERLRNHTAAQLINGFN---FLRWLESEPQDSHNEHV  150 (513)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHC---CCHHHHCCCCHHHHCCCCC---HHHHHHCCCCCCCCEEE
T ss_conf             68889999997389978998599819976399999849---8968877979999718756---99998628987663599


Q ss_pred             EECCEEEEEEEEEEECCC--C---EEE---EEEEHHHHHH
Q ss_conf             656907899999763289--5---299---9830458999
Q gi|255764476|r  269 LEHGNNKSYKIVRVLNSF--G---EAG---IAIDVSKEIT  300 (792)
Q Consensus       269 ~~~G~rr~~~v~~~~~~~--G---~~G---ia~DITErk~  300 (792)
                      ...|......++.+...+  |   .+|   +..|.++..+
T Consensus       151 ~~~~~~~~~~~~pi~~~~~~~~~~~~GaV~~lk~~~~~~~  190 (513)
T PRK10820        151 VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR  190 (513)
T ss_pred             EECCCEEEEEEEEEEECCCCCCCEEEEEEEEECCHHHHHH
T ss_conf             8769678999767875277886036668988246899999


No 98 
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=97.95  E-value=0.00071  Score=44.42  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=64.5

Q ss_pred             HHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCC------CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9984308959998489808985368885509997896049------9879999989754777664657889999998762
Q gi|255764476|r  310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK  383 (792)
Q Consensus       310 e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~------p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~  383 (792)
                      ..|+.++.||..||.++++.-+|++..+|++.+.+.+-|.      |...+++...+                   .+++
T Consensus       374 ~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~lsa~ap~~~~vf~~~~-------------------a~~~  434 (712)
T COG5000         374 AVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSAIAPELEEVFAEAG-------------------AAAR  434 (712)
T ss_pred             HHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHH-------------------HHCC
T ss_conf             998158503899747870776260178884687067644026642137899999765-------------------4038


Q ss_pred             CCCCCCEEEECCC-CCEEEEEEEECCC---CCEEEEECCHHHHHHHHH
Q ss_conf             4676502688789-8189999735699---868999459579999999
Q gi|255764476|r  384 SSETHKDTWHLPN-GQTLHVIVTSNPR---GGTIWMFENLTVQVDLET  427 (792)
Q Consensus       384 ~~~~~~~~w~l~D-Gr~l~v~~~~~p~---Gg~~~~~~DITE~~~le~  427 (792)
                      .....+-....++ -|++.|-.+.++.   +|.+.+|+|||+-+.+++
T Consensus       435 ~~~~~ev~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQR  482 (712)
T COG5000         435 TDKRVEVKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQR  482 (712)
T ss_pred             CCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHH
T ss_conf             774201000147874156667532144468856999635089999999


No 99 
>KOG0519 consensus
Probab=97.89  E-value=5.7e-06  Score=58.80  Aligned_cols=210  Identities=19%  Similarity=0.186  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999966663225899999999973577788998999999999999999999999999998851498300023
Q gi|255764476|r  564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS  643 (792)
Q Consensus       564 ~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~  643 (792)
                      .+......|...++|..++|.+++++...++.....  +.+.+.--++....++..+..++++-.|.++..-|.-.....
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~--~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i  458 (786)
T KOG0519         381 MAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIV--LSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESI  458 (786)
T ss_pred             HCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEE--ECCCCCEEEEECCCCHHHHHHHHCCCHHCCCCCCCCCCCCCC
T ss_conf             351556678887413312422042122357665202--236664068502330465554514661003456876453322


Q ss_pred             EECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CEEEECHHHHHHHHHHHHHHHHH--CCCCCC--EEEEEEEEE---
Q ss_conf             3069999999999999999848968999956986-08998789999999999886775--388868--899999987---
Q gi|255764476|r  644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMD--FSSKGS--TVILKAARD---  715 (792)
Q Consensus       644 ~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~-~~v~~D~~rL~QVl~NLl~NAik--~~~~gg--~I~i~~~~~---  715 (792)
                      ...+..++.............+...+.+.+..+. ..+++|..++.|++.+..+|+..  ++..+.  .+.+.+...   
T Consensus       459 ~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (786)
T KOG0519         459 VFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLGIS  538 (786)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEEECCCCCC
T ss_conf             23288998867432110034752223312356887310110344544555430122232003357620699980126654


Q ss_pred             ------------------CC-EEEEEEEECCCCCCHHHHHHHCCCCEECCCC-CC-CCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             ------------------99-8999999788978977865414883762689-88-885663799999999961986999
Q gi|255764476|r  716 ------------------NG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQ-RRGVGLGLSIVESFINLHGGHVSI  774 (792)
Q Consensus       716 ------------------~~-~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~-~~-~~GtGLGLsiv~~iVe~hgG~I~v  774 (792)
                                        .+ .+++.+.++..|+......-.|.-|.+.... .+ ..+.++.++.+....+.+.|.+++
T Consensus       539 vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (786)
T KOG0519         539 VDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGL  618 (786)
T ss_pred             CCCCCCHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             11144310566643666100244223310303467777204565540034542002455542012365677775314335


Q ss_pred             E
Q ss_conf             9
Q gi|255764476|r  775 S  775 (792)
Q Consensus       775 ~  775 (792)
                      .
T Consensus       619 ~  619 (786)
T KOG0519         619 V  619 (786)
T ss_pred             C
T ss_conf             5


No 100
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89  E-value=0.0023  Score=40.89  Aligned_cols=195  Identities=12%  Similarity=0.151  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf             99996666322589999999997357778899899999999999999999999999999885149830002330699999
Q gi|255764476|r  572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL  651 (792)
Q Consensus       572 F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i  651 (792)
                      +.+.+-||+=+|..+|..-.+||.++..      +.+-++-|.+|+..+    .+.|.|+|+--|.---.-..+|-.+.-
T Consensus        18 LcsRvCHDiISPvgAInnGLeLLdeg~a------ddDAm~LIrsSArna----s~rLqFaR~AFGAsgSag~~iDtgeae   87 (214)
T COG5385          18 LCSRVCHDIISPVGAINNGLELLDEGGA------DDDAMDLIRSSARNA----SVRLQFARLAFGASGSAGASIDTGEAE   87 (214)
T ss_pred             HHHHHHHHCCCCHHHHHCHHHHHCCCCC------CHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             9998875404817776032566426896------478999999976517----888778898725555433356606699


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCC--
Q ss_conf             999999999998489689999569860899878999999999988677538886889999998799899999978897--
Q gi|255764476|r  652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS--  729 (792)
Q Consensus       652 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~G--  729 (792)
                      .-+.+.+.   .+| -++....++.+   . ... -...++||+--|...-|.||.+.+..+..+.+-+|++.-.|+=  
T Consensus        88 k~A~~~~a---~ek-pe~~W~g~r~~---~-~Kn-~vkllLNl~lia~~aiPrGG~~~vtle~~e~d~rfsi~akG~m~R  158 (214)
T COG5385          88 KAAQDFFA---NEK-PELTWNGPRAI---L-PKN-RVKLLLNLFLIAYGAIPRGGSLVVTLENPETDARFSIIAKGRMMR  158 (214)
T ss_pred             HHHHHHHH---CCC-CCCCCCCCHHH---C-CCC-HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCC
T ss_conf             99999986---238-71235587422---4-750-589999999997055788982689953677674389983275344


Q ss_pred             CCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             8977865414883762689888856637999999999619869999788994399999734
Q gi|255764476|r  730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS  790 (792)
Q Consensus       730 I~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~  790 (792)
                      .||+.++-+=.    .+......+.-.-=+-.--+++.-|++|.|++.... ..|+-+.|+
T Consensus       159 vppk~lel~~G----~~~eE~vdahsVQpyYt~lLa~eAgm~I~v~~~~e~-iv~~A~v~a  214 (214)
T COG5385         159 VPPKFLELHSG----EPPEEAVDAHSVQPYYTLLLAEEAGMTISVHATAER-IVFTAWVVA  214 (214)
T ss_pred             CCHHHHHHHCC----CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCE-EEEEEECCC
T ss_conf             79899865059----984224787530399999999970986899963643-799975149


No 101
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763   This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=97.86  E-value=6.4e-05  Score=51.60  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=12.1

Q ss_pred             CCCEEEE--EEEECCCCCE---EEEECCHHHHHH
Q ss_conf             9818999--9735699868---999459579999
Q gi|255764476|r  396 NGQTLHV--IVTSNPRGGT---IWMFENLTVQVD  424 (792)
Q Consensus       396 DGr~l~v--~~~~~p~Gg~---~~~~~DITE~~~  424 (792)
                      +|..+..  ...+.|.|-.   .-+|.++=-|++
T Consensus       137 ~G~~~~~~~~p~~~~~GT~V~V~~LF~N~P~R~k  170 (367)
T TIGR00585       137 EGKNIIEEIKPAPRPVGTTVEVRDLFYNLPVRRK  170 (367)
T ss_pred             CCCEEEECCCCCCCCCCCEEEEECCCCCCCHHHH
T ss_conf             6873420025668898978997303158520268


No 102
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.85  E-value=0.0009  Score=43.71  Aligned_cols=114  Identities=15%  Similarity=0.200  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             99999999999999999851680058981-59928985257898736778775661015853389678999986125787
Q gi|255764476|r  182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK  260 (792)
Q Consensus       182 ~~~~~~L~~~~~~lr~llda~P~~vw~~D-~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~  260 (792)
                      .+...+|.++++.-|.++.++|.++.+.+ .||..+..|..-....               .++..++++++.+......
T Consensus       346 ~~~a~~l~e~e~fnr~~i~~apvg~~~l~~~dg~~~~~n~~~~~~~---------------~~~~~~~~~~~~~~~~~~~  410 (947)
T PRK10841        346 ESNALRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELAHNYL---------------NMLTHEDRQRLTQIICGQQ  410 (947)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHH---------------HHCCCCHHHHHHHHHHCCC
T ss_conf             6778899878887788986177137999706886331038999987---------------6237552899999986137


Q ss_pred             -EEEEEEEEEECCEEEEEEEEEEECCC----CEEEEEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -03457888656907899999763289----5299983045899988788999999843
Q gi|255764476|r  261 -NFCETVSTLEHGNNKSYKIVRVLNSF----GEAGIAIDVSKEITVNDQLTHTYEILHN  314 (792)
Q Consensus       261 -~~~~~~~~~~~G~rr~~~v~~~~~~~----G~~Gia~DITErk~ae~aLrr~~e~Ld~  314 (792)
                       .+.+    +..+..+.+.++-++...    -...+.+|||+||++|++|++.++.-|+
T Consensus       411 ~~~~~----~~~~~~~~l~~~~~~~ry~~~~v~~c~~~Disar~~~e~~L~~a~~AAE~  465 (947)
T PRK10841        411 VNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQ  465 (947)
T ss_pred             CCCEE----EEECCCCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf             88348----99359857999986531268607999998540789999999999999999


No 103
>pfam10090 DUF2328 Uncharacterized protein conserved in bacteria (DUF2328). Members of this family of hypothetical bacterial proteins have no known function.
Probab=97.79  E-value=0.0034  Score=39.78  Aligned_cols=171  Identities=14%  Similarity=0.135  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999735777889989999999999999999999999999988514983000233069999999999999999848
Q gi|255764476|r  586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN  665 (792)
Q Consensus       586 ~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~  665 (792)
                      +|....|||.++..  ..+  ++.++-|.+|+.....-    |.|.|+-=|.-. .-+.+|..++-.-+...    +...
T Consensus         3 AI~NGLELL~~~~~--~~~--~~~m~LI~~Sa~~A~aR----l~F~RlAfGaag-~~~~i~~~e~~~~~~~~----~~~~   69 (181)
T pfam10090         3 AIVNGLELLDDEGD--PEM--GPEMALIRESARNASAR----LRFFRLAFGAAG-AGQQIDLAEAKSVLEGY----LAGG   69 (181)
T ss_pred             CHHHHHHHHCCCCC--CCC--HHHHHHHHHHHHHHHHH----HHHHHHHHCCCC-CCCCCCHHHHHHHHHHH----HHCC
T ss_conf             12555888707898--641--68999999999999999----999999808468-88856999999999999----8388


Q ss_pred             CCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECC--CCCCHHHHHHHCCCCE
Q ss_conf             96899995698608998789999999999886775388868899999987998999999788--9789778654148837
Q gi|255764476|r  666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG--SSIPEDMCKSVFNRFV  743 (792)
Q Consensus       666 ~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G--~GI~~e~~~riF~~F~  743 (792)
                      .+++...++.+.     =+....+.++||+-=+....|.||+|+|++ ..++...++|+=+|  ..++|+..+-+=..  
T Consensus        70 r~~l~W~~~~~~-----~~k~~vklllnl~l~~~~AlprGG~i~V~~-~~~~~~~~~v~a~g~r~~~~~~~~~~L~g~--  141 (181)
T pfam10090        70 RITLDWQLERDL-----LPKPEVKLLLNLLLIAEDALPRGGEIDVGE-GSDGAGGWRVTAEGERLRIDPDLWAALAGG--  141 (181)
T ss_pred             CEEEEECCCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCCEEEEEEEECCCCCCHHHHHHHCCC--
T ss_conf             538983587454-----887999999999999997547787789998-417897599999704678997899985699--


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             626898888566379999999996198699997889
Q gi|255764476|r  744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE  779 (792)
Q Consensus       744 ~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G  779 (792)
                        ...........=-+....+.+..|++|.++....
T Consensus       142 --~~~~~l~~~~VQ~~~l~~la~~~G~~l~~~~~~~  175 (181)
T pfam10090       142 --APEEELDARNVQFYLLPLLAREAGGTLSYEITED  175 (181)
T ss_pred             --CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             --9877899876499999999998699117886497


No 104
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.69  E-value=0.0014  Score=42.42  Aligned_cols=126  Identities=14%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHCCCC
Q ss_conf             9999999999999999998516800589815992898525789873677877566101585-338967899998612578
Q gi|255764476|r  181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALE  259 (792)
Q Consensus       181 l~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~~~~~~~~~~~~  259 (792)
                      .+.++..+..+..+|.+++-.+.++|...|..|+++.+|..-.++.   +.+.+++.+... +++.-.+...........
T Consensus        99 ~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L---~~~~E~~~~~~i~elL~i~d~y~~~dL~e~~  175 (459)
T COG5002          99 VQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKML---GVSKEDALGRSILELLKIEDTYTFEDLVEKN  175 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHH---CCCHHHHHCCCHHHHHCCCCCEEHHHHHHCC
T ss_conf             9999876788888899899987076576457786899350799984---8677877165378885775430288887259


Q ss_pred             CEEEEEEEEEECCEEEEEEE------EEEECCCCEEEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf             70345788865690789999------97632895299983045899988788999999
Q gi|255764476|r  260 KNFCETVSTLEHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI  311 (792)
Q Consensus       260 ~~~~~~~~~~~~G~rr~~~v------~~~~~~~G~~Gia~DITErk~ae~aLrr~~e~  311 (792)
                      ....-..+  ..++-..+++      .....-.|.+.+..|+||+++.|+++|.+...
T Consensus       176 ~s~lld~~--~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRefvan  231 (459)
T COG5002         176 DSLLLDSS--DEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERREFVAN  231 (459)
T ss_pred             CCEEEEEC--CCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             82898604--788637999988888511466440699873143878889999999886


No 105
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.57  E-value=0.0034  Score=39.79  Aligned_cols=51  Identities=12%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCH
Q ss_conf             878899999984308959998489808985368885509997896049987
Q gi|255764476|r  302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN  352 (792)
Q Consensus       302 e~aLrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~  352 (792)
                      |++.++....||.+++||...|.++++.++|+++++++|++.+.+.++|..
T Consensus        76 Er~~~~L~alLdsl~dgV~svD~~G~I~~~N~aa~~i~~~~~~~~~G~~i~  126 (513)
T PRK10820         76 EREHLALSALLEALPEPVLSIDMKSKVELANPASCQLFGQSEERLRNHTAA  126 (513)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHH
T ss_conf             468889999997389978998599819976399999849896887797999


No 106
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.36  E-value=0.00062  Score=44.84  Aligned_cols=127  Identities=12%  Similarity=0.041  Sum_probs=60.3

Q ss_pred             EEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCCCE-------EEEEEECC-----
Q ss_conf             99981799700141341232189832023444321189--46789899999999853965-------89999868-----
Q gi|255764476|r   83 TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK--FHHYIKLSKATEKLRKEGQS-------FDLVAETQ-----  148 (792)
Q Consensus        83 ~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~--p~~a~~l~~ai~~l~~~g~~-------f~l~~~t~-----  148 (792)
                      |.+|.|+-...+|.++   -.|++.++..+.. ...-.  -.+..+| ..+..+.-+||.       -.++++++     
T Consensus        45 I~ve~gG~~~I~V~DN---G~Gi~~~Dl~la~-~rHaTSKI~~~~DL-~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~  119 (638)
T COG0323          45 IEVEGGGLKLIRVRDN---GSGIDKEDLPLAL-LRHATSKIASLEDL-FRIRTLGFRGEALASIASVSRLTITSRTAEAS  119 (638)
T ss_pred             EEEECCCEEEEEEEEC---CCCCCHHHHHHHH-HCCCCCCCCCHHHH-HHHHCCCCCHHHHHHHHHHHEEEEEECCCCCC
T ss_conf             9993598018999889---9999989999998-65146457865568-77435673387799988754448994167767


Q ss_pred             CCEEEEEEEEE-----------ECCEEEEEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEE
Q ss_conf             97299983045-----------57548998740-1068999999999999999999999999851680058981599289
Q gi|255764476|r  149 NDCAIKIEGRV-----------SGSCAFLRILS-LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL  216 (792)
Q Consensus       149 ~g~~i~~~Gr~-----------~g~~a~~r~~d-~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~  216 (792)
                      .|..+.++|..           .|..+.++  | +-+.....-=++...+++..-.+.++.+.=+-|..-|..--+|++.
T Consensus       120 ~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~--dLF~NtPaRrKflks~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~  197 (638)
T COG0323         120 EGTQIYAEGGGMEVTVKPAAHPVGTTVEVR--DLFYNTPARRKFLKSEKTEFGHITELINRYALAHPDISFSLSHNGKLR  197 (638)
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCEEEEH--HHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEE
T ss_conf             638999628841123347779999899845--712558476654145389999999999998730797279999889041


No 107
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.33  E-value=0.013  Score=35.71  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH--HHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             899999984308959998489808985368885509997--896049987999998975477766465788999999876
Q gi|255764476|r  305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY  382 (792)
Q Consensus       305 Lrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~--~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~  382 (792)
                      ++....+|+.+.+||...|.++++..+|+++++|++...  ....+.+... +         .|..        ......
T Consensus       220 ~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~~~~-~---------~~~~--------~l~~vl  281 (541)
T PRK11086        220 FEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTDVHS-W---------SPVS--------RLKEVL  281 (541)
T ss_pred             HHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHH-H---------CCCH--------HHHHHH
T ss_conf             999999985300169997589879998499998743358874312551777-2---------7545--------599998


Q ss_pred             HCCCCCCEEEECCCCCEEEEEEEECC-CC---CEEEEECCHHHHHHHHHHH
Q ss_conf             24676502688789818999973569-98---6899945957999999999
Q gi|255764476|r  383 KSSETHKDTWHLPNGQTLHVIVTSNP-RG---GTIWMFENLTVQVDLETKY  429 (792)
Q Consensus       383 ~~~~~~~~~w~l~DGr~l~v~~~~~p-~G---g~~~~~~DITE~~~le~~~  429 (792)
                      ....+..+.-..-+|+.+-+...|.. .|   |.+.+|+|+||.+++++++
T Consensus       282 ~~~~~~~d~e~~~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L  332 (541)
T PRK11086        282 RTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRL  332 (541)
T ss_pred             HCCCCCCEEEEEECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHH
T ss_conf             448853107999899899999777654890689999984427899999999


No 108
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=97.29  E-value=0.00044  Score=45.84  Aligned_cols=39  Identities=31%  Similarity=0.465  Sum_probs=18.3

Q ss_pred             HHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCC
Q ss_conf             996203432899689848864058887828987894389
Q gi|255764476|r  439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG  477 (792)
Q Consensus       439 ~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~  477 (792)
                      .++++++++.+.+.+|++.++|+++++++|++++++.++
T Consensus         6 ~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~   44 (67)
T smart00091        6 ILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGK   44 (67)
T ss_pred             HHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC
T ss_conf             999655798588699948998859999889099999599


No 109
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=97.23  E-value=0.0031  Score=40.04  Aligned_cols=36  Identities=33%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             CCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCC
Q ss_conf             343289968984886405888782898789438983
Q gi|255764476|r  444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH  479 (792)
Q Consensus       444 ~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~  479 (792)
                      ++++.+.+.+|++.++|+++++++|++++++.+++.
T Consensus         2 ~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~   37 (103)
T cd00130           2 PDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSL   37 (103)
T ss_pred             CEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCH
T ss_conf             628999979898999988999987988789169965


No 110
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=97.16  E-value=0.02  Score=34.51  Aligned_cols=62  Identities=19%  Similarity=0.214  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCC
Q ss_conf             59579999999999999999999962034328996898488640588878289878943898
Q gi|255764476|r  417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT  478 (792)
Q Consensus       417 ~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~  478 (792)
                      .|+++....+..+.......+..+++.++++.+++.+|++.++|+++.+++|++........
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~  156 (232)
T COG2202          95 RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRG  156 (232)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCC
T ss_conf             11577888999987579999999956896799990999899975899998697989982776


No 111
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193   This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=97.00  E-value=0.0026  Score=40.54  Aligned_cols=97  Identities=18%  Similarity=0.227  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHCCC---CC-CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHH
Q ss_conf             99999999886775388---86-889999998799899999978897897786541488376268988885663799999
Q gi|255764476|r  687 LLQIFSKILSNAMDFSS---KG-STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE  762 (792)
Q Consensus       687 L~QVl~NLl~NAik~~~---~g-g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~  762 (792)
                      |+=...-=++||+||+=   +. |.|.|+-.--++.+.+.|+|+|--++-|....=.-||-..++...-+=-||||.+.-
T Consensus        44 ~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyEDklev~vsD~G~SFD~d~~k~~lGPyd~~~~i~~L~eGGLGLFLie  123 (161)
T TIGR01924        44 LKIAVSEACTNAVKHAYKEEENVGEISIEFEIYEDKLEVIVSDEGDSFDLDTKKQELGPYDKSEDIDQLREGGLGLFLIE  123 (161)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHH
T ss_conf             67766555303311223089836789988878875789998207864111002532589795787543201771366451


Q ss_pred             HHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             9999619869999788994399999
Q gi|255764476|r  763 SFINLHGGHVSISSSDEGVTTINCR  787 (792)
Q Consensus       763 ~iVe~hgG~I~v~S~~G~Gttf~v~  787 (792)
                      ++..    .|.|....|.--..|=+
T Consensus       124 tLMD----~V~~~~~sGV~v~MTKY  144 (161)
T TIGR01924       124 TLMD----EVKVYEDSGVTVAMTKY  144 (161)
T ss_pred             CCCC----EEEEEECCCEEEEEEEE
T ss_conf             0376----16998328608988642


No 112
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.98  E-value=0.02  Score=34.53  Aligned_cols=151  Identities=16%  Similarity=0.150  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCEEEEC--HHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99999999999851680058981599289852--5789873677877566101585338967899998612578703457
Q gi|255764476|r  188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWAN--ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET  265 (792)
Q Consensus       188 L~~~~~~lr~llda~P~~vw~~D~dGri~~vN--~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~  265 (792)
                      .+-..+.+..++...+..+.+.|.+|.+++..  ..+....+..+.      ..+...-+     ...-+.+.+......
T Consensus        57 a~p~l~~l~~~l~~~~~~v~l~D~~G~vL~~~G~~~~~~~~~~~~~------~~G~~wsE-----~~~GTNaiGtaL~~~  125 (639)
T PRK11388         57 GQAALEDAYEYMEPRECALLILDETGCILSRNGDPQTLQQLSALGF------NDGTYCAE-----GIIGTNALSLAAISG  125 (639)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCC------CCCCEEEE-----CCCCCCHHHHHHHHC
T ss_conf             9999999999866798399999899529998359889889996697------67864222-----588865899999749


Q ss_pred             EEEEECCEEEEE------EEEEEEC--CCCE-EEEEEEHHH----------------HHHHHHHHH-------------H
Q ss_conf             888656907899------9997632--8952-999830458----------------999887889-------------9
Q gi|255764476|r  266 VSTLEHGNNKSY------KIVRVLN--SFGE-AGIAIDVSK----------------EITVNDQLT-------------H  307 (792)
Q Consensus       266 ~~~~~~G~rr~~------~v~~~~~--~~G~-~Gia~DITE----------------rk~ae~aLr-------------r  307 (792)
                      .++.+.|..+++      .....|+  +.|. +|+ +|||-                -+..|..|.             .
T Consensus       126 ~pv~V~g~EHf~~~~~~~sC~aaPI~d~~G~l~Gv-ldlt~~~~~~~~~~l~lv~~~a~~Ie~~L~~~~~~~~~~~~l~~  204 (639)
T PRK11388        126 QPVQTMGDQHFKQALHNWAFCATPVFDSKGRLTGT-IALACPVEQTSAADLPLTLAIAREVGNLLLTDSLLAESNRHLNQ  204 (639)
T ss_pred             CEEEECHHHHHHHHCCCCEEEEEEEECCCCCEEEE-EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             83898156767675058867775678899978999-97678766678435999999999999999999999999999877


Q ss_pred             HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCC
Q ss_conf             9999843089599984898089853688855099978960499
Q gi|255764476|r  308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP  350 (792)
Q Consensus       308 ~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p  350 (792)
                      ....++...+|+..+|.++++.+.|+..+++++++...+.+++
T Consensus       205 ~~~~l~~~~~gvla~d~~G~i~~~N~~A~~~L~~~~~~~~g~~  247 (639)
T PRK11388        205 LNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRA  247 (639)
T ss_pred             HHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHCCCHHHHCCCC
T ss_conf             6888648876289988999174004899988598845644764


No 113
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=96.98  E-value=0.029  Score=33.36  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=26.4

Q ss_pred             EEHHHHHHHHHHHHH----HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHH
Q ss_conf             304589998878899----9999843089599984898089853688855099978
Q gi|255764476|r  293 IDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA  344 (792)
Q Consensus       293 ~DITErk~ae~aLrr----~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~  344 (792)
                      .|+++.+..+.+++.    +...++.++.++.++|.++++.++|+++++++|+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~  150 (232)
T COG2202          95 RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPE  150 (232)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHH
T ss_conf             11577888999987579999999956896799990999899975899998697989


No 114
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=96.96  E-value=0.0014  Score=42.31  Aligned_cols=56  Identities=23%  Similarity=0.302  Sum_probs=33.2

Q ss_pred             HHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHHHHHH
Q ss_conf             999998516800589815992898525789873677877566101585-33896789999
Q gi|255764476|r  194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRM  252 (792)
Q Consensus       194 ~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~~~~~  252 (792)
                      +++.+++++|.++|+.|.+|+++++|++++++++   ++.++.++... +++.+..+...
T Consensus         2 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g---~~~~e~~g~~~~~~~~~~~~~~~   58 (67)
T smart00091        2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLG---YSPEELIGKSLLELIHPEDREEV   58 (67)
T ss_pred             HHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHC---CCHHHHCCCCHHHHCCHHHHHHH
T ss_conf             7999999655798588699948998859999889---09999959989994699899999


No 115
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=96.94  E-value=0.011  Score=36.36  Aligned_cols=38  Identities=13%  Similarity=0.115  Sum_probs=27.6

Q ss_pred             CCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCH
Q ss_conf             08959998489808985368885509997896049987
Q gi|255764476|r  315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN  352 (792)
Q Consensus       315 l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~  352 (792)
                      +++++.++|.++++.|+|+++++++|+++..+.+++..
T Consensus         1 ~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~   38 (103)
T cd00130           1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLL   38 (103)
T ss_pred             CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHH
T ss_conf             96289999798989999889999879887891699654


No 116
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=96.75  E-value=0.016  Score=35.17  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHH
Q ss_conf             99999999999988514983000233069999999999999
Q gi|255764476|r  619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA  659 (792)
Q Consensus       619 ~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~  659 (792)
                      .+..+++-|.|-|.+.+|- ++    -|..+.+...-.+++
T Consensus       630 ~~kd~a~lL~D~AlL~eG~-~l----eDP~~fa~Rin~Ll~  665 (701)
T PTZ00272        630 AVKDLVFLLFDTSLLTSGF-QL----EDPTGYAERINRMIK  665 (701)
T ss_pred             HHHHHHHHHHHHHHHHCCC-CC----CCHHHHHHHHHHHHH
T ss_conf             8999999999888986899-97----798999999999999


No 117
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=96.53  E-value=0.043  Score=32.21  Aligned_cols=90  Identities=11%  Similarity=0.007  Sum_probs=53.0

Q ss_pred             HHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCC-----CCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-EE
Q ss_conf             99998516800589815992898525789873677-----8775661015853389678999986125787034578-88
Q gi|255764476|r  195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV-ST  268 (792)
Q Consensus       195 lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~-----~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~  268 (792)
                      -..++|+++.||.+.|.+|.|.|+|+|++..+..+     +....+.+..     .+..-.-+......+.++.+.. ..
T Consensus         9 ~~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~-----gs~ll~ll~q~~~~~~~~~~~~v~l   83 (363)
T COG3852           9 AGAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPF-----GSLLLSLLDQVLERGQPVTEYEVTL   83 (363)
T ss_pred             CHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCC-----CCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             17687455785699827782896088899999977888824877887177-----7288999989998358851010244


Q ss_pred             EECCEEEEEEEEEEECC--CCEE
Q ss_conf             65690789999976328--9529
Q gi|255764476|r  269 LEHGNNKSYKIVRVLNS--FGEA  289 (792)
Q Consensus       269 ~~~G~rr~~~v~~~~~~--~G~~  289 (792)
                      +..|.-..++++..|++  .|.+
T Consensus        84 ~~~g~~~~v~~~v~~v~~~~G~v  106 (363)
T COG3852          84 VILGRSHIVDLTVAPVPEEPGSV  106 (363)
T ss_pred             EECCCCCEEEEEEEECCCCCCEE
T ss_conf             20786523789986226899748


No 118
>PRK05218 heat shock protein 90; Provisional
Probab=96.22  E-value=0.0082  Score=37.15  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH
Q ss_conf             99999999999885149830002330699999999999
Q gi|255764476|r  620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS  657 (792)
Q Consensus       620 l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~  657 (792)
                      +..+++.|.|.|.+.+|- .++    |+...+..+-.+
T Consensus       579 ~~~~~~~Lyd~AlL~~G~-~~~----dp~~f~~r~~~l  611 (612)
T PRK05218        579 FKDLAELLYDQALLAEGG-SLE----DPAAFVKRLNEL  611 (612)
T ss_pred             HHHHHHHHHHHHHHHCCC-CCC----CHHHHHHHHHHH
T ss_conf             999999999999986899-961----899999999975


No 119
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.12  E-value=0.1  Score=29.67  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCC
Q ss_conf             9999999851680058981599289852578987367
Q gi|255764476|r  192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET  228 (792)
Q Consensus       192 ~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~  228 (792)
                      ...+..++++.+.++...|.+|+++++|+.-.++++.
T Consensus       202 l~~~~~~l~~~~~gvla~d~~G~i~~~N~~A~~~L~~  238 (639)
T PRK11388        202 LNQLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRL  238 (639)
T ss_pred             HHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHCC
T ss_conf             8776888648876289988999174004899988598


No 120
>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=96.11  E-value=0.034  Score=32.95  Aligned_cols=75  Identities=11%  Similarity=0.085  Sum_probs=38.6

Q ss_pred             EEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEE
Q ss_conf             88640588878289878943898388988777630256114-68899874026544311568999725038--8899997
Q gi|255764476|r  456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIP  532 (792)
Q Consensus       456 ~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~p  532 (792)
                      +.++|+++++|+||+++++.+.+  +.+.+.+.|  +|.+. ...+...... .......+.|+.++||++  +...+.|
T Consensus         1 v~y~s~~~~~i~G~~~~e~~~~~--~~~~~~ihp--dD~~~~~~~~~~~~~~-~~~~~~~e~R~~~~dG~~~wi~~~~~~   75 (90)
T pfam08447         1 IIYWSPRFEEILGYTPEELKSSY--EDWLDLVHP--EDRERVRRALQEFSLK-KGEPYSGEYRIRRKDGEYRWVEARGRP   75 (90)
T ss_pred             CEEECHHHHHHHCCCCHHCCCCH--HHHHHHCCC--HHHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             99999899998499901107998--899987190--5688999887888860-587404689998159939999999999


Q ss_pred             CCC
Q ss_conf             058
Q gi|255764476|r  533 LPN  535 (792)
Q Consensus       533 l~d  535 (792)
                      +.|
T Consensus        76 ~~d   78 (90)
T pfam08447        76 IRD   78 (90)
T ss_pred             EEC
T ss_conf             999


No 121
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=95.95  E-value=0.0021  Score=41.23  Aligned_cols=11  Identities=36%  Similarity=0.474  Sum_probs=7.3

Q ss_pred             EEEEECCCCCE
Q ss_conf             99735699868
Q gi|255764476|r  402 VIVTSNPRGGT  412 (792)
Q Consensus       402 v~~~~~p~Gg~  412 (792)
                      |...++++||.
T Consensus       237 vN~I~T~~GGT  247 (594)
T smart00433      237 VNNIATTEGGT  247 (594)
T ss_pred             EEEEECCCCCC
T ss_conf             31478899984


No 122
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=95.58  E-value=0.027  Score=33.59  Aligned_cols=44  Identities=11%  Similarity=0.226  Sum_probs=22.9

Q ss_pred             CCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             754899874010689999999999999999999999998516800589815992
Q gi|255764476|r  161 GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD  214 (792)
Q Consensus       161 g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr~llda~P~~vw~~D~dGr  214 (792)
                      |....+.+++-...       =..+.++++-...+.   |.+|.||.+....+.
T Consensus       171 GT~I~L~Lk~~e~e-------fl~~~rl~~ivkkYS---d~i~~PI~~~~~~~~  214 (623)
T COG0326         171 GTEITLHLKEEEDE-------FLEEWRLREIVKKYS---DHIAYPIYIEGEKEK  214 (623)
T ss_pred             CCEEEEEECCCHHH-------HHHHHHHHHHHHHHH---CCCCCCEEEEEECCC
T ss_conf             85799998876677-------740667999999873---254316699642255


No 123
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=95.56  E-value=0.17  Score=28.13  Aligned_cols=117  Identities=16%  Similarity=0.079  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCH-HHHHHHHHHCCCCCEEEE
Q ss_conf             9999999999998516800589815992898525789873677877566101585-33896-789999861257870345
Q gi|255764476|r  187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKE-EIKKRMISSSALEKNFCE  264 (792)
Q Consensus       187 ~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~-~~~~~~~~~~~~~~~~~~  264 (792)
                      ++..-.+...++|+++-++|...|..|.++.+|++-+++++..... .+.+++.. +.+.+ ..-..+   ...+.+.+.
T Consensus       209 EIa~l~~er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~-~~~ig~~i~~v~~p~~~l~~v---l~~~~~~~~  284 (537)
T COG3290         209 EIATLLEERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPS-GDPIGRSIVEVLPPDSDLPEV---LETGKPQHD  284 (537)
T ss_pred             HHHHHHHHHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCC-CCCCCCCCEEEECCCCCCHHH---HHCCCCCCC
T ss_conf             9999999999999876362899878985761128899984656767-564466103761563675778---750776311


Q ss_pred             EEEEEECCEEEEEEEEEEEC--C---CCEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf             78886569078999997632--8---9529998304589998878899999
Q gi|255764476|r  265 TVSTLEHGNNKSYKIVRVLN--S---FGEAGIAIDVSKEITVNDQLTHTYE  310 (792)
Q Consensus       265 ~~~~~~~G~rr~~~v~~~~~--~---~G~~Gia~DITErk~ae~aLrr~~e  310 (792)
                      +. ..++|  +++-+...|.  .   .|.+-..+|-||.+..-++|...+.
T Consensus       285 ~e-~~~ng--~~~i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~vr~  332 (537)
T COG3290         285 EE-IRING--RLLVANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQ  332 (537)
T ss_pred             HH-HHCCC--EEEEEEECCEEECCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf             34-41477--59999852378889776899987637789999999998999


No 124
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.25  E-value=0.17  Score=28.10  Aligned_cols=87  Identities=17%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             HHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHCCCCCEEEEEEEEEECC
Q ss_conf             999998516800589815992898525789873677877566101585-3389678999986125787034578886569
Q gi|255764476|r  194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHG  272 (792)
Q Consensus       194 ~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~G  272 (792)
                      .|.++++++|+||+..|-.|.+..+|+|++..++..   .+...+... .+++...-.+.   ...+.......+++++|
T Consensus        81 ~L~aLL~al~~pVlsvd~kg~v~~aNpAa~~l~~~~---~~~~~g~~~~~l~~~~nf~~~---l~~~~~~~~~~~V~~~g  154 (511)
T COG3283          81 ALSALLEALPEPVLSVDMKGKVDMANPAACQLFGRK---EDRLRGHTAAQLINGFNFLRW---LEGEPQRSHNEHVVING  154 (511)
T ss_pred             HHHHHHHHCCCCEEEECCCCCEEECCHHHHHHHCCC---HHHHCCCCHHHHCCCCCHHHH---HHCCCCCCCCCEEEECC
T ss_conf             999999718875687527774332588999984888---354057569986386778999---84588777774389816


Q ss_pred             EEEEEEEEEEECCC
Q ss_conf             07899999763289
Q gi|255764476|r  273 NNKSYKIVRVLNSF  286 (792)
Q Consensus       273 ~rr~~~v~~~~~~~  286 (792)
                      ....++++.+....
T Consensus       155 q~~lmeitPv~~~~  168 (511)
T COG3283         155 QNFLMEITPVYLQD  168 (511)
T ss_pred             HHHEEECCCEEECC
T ss_conf             22302224300058


No 125
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=95.17  E-value=0.0027  Score=40.49  Aligned_cols=11  Identities=9%  Similarity=0.277  Sum_probs=5.8

Q ss_pred             HHHHHHHCCCC
Q ss_conf             77865414883
Q gi|255764476|r  732 EDMCKSVFNRF  742 (792)
Q Consensus       732 ~e~~~riF~~F  742 (792)
                      .+..+++|+-.
T Consensus       691 a~~ad~~f~~L  701 (725)
T PRK05644        691 AIAADEIFTTL  701 (725)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999986


No 126
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.12  E-value=0.094  Score=29.91  Aligned_cols=61  Identities=16%  Similarity=0.226  Sum_probs=46.0

Q ss_pred             HHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             999999843089599984898089853688855099978960499879999989754777664657889999
Q gi|255764476|r  306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN  377 (792)
Q Consensus       306 rr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~  377 (792)
                      ......|+.++++|.-.|-.+.+...|+|++++|+.+++-+.+++.-. +          -+..+|..|-++
T Consensus        80 l~L~aLL~al~~pVlsvd~kg~v~~aNpAa~~l~~~~~~~~~g~~~~~-l----------~~~~nf~~~l~~  140 (511)
T COG3283          80 LALSALLEALPEPVLSVDMKGKVDMANPAACQLFGRKEDRLRGHTAAQ-L----------INGFNFLRWLEG  140 (511)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCEEECCHHHHHHHCCCHHHHCCCCHHH-H----------CCCCCHHHHHHC
T ss_conf             799999971887568752777433258899998488835405756998-6----------386778999845


No 127
>PTZ00130 heat shock protein 90; Provisional
Probab=94.31  E-value=0.095  Score=29.85  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             9999999999999851680058981
Q gi|255764476|r  186 KKLSNHISVFKVLFDSLDFLVWHRD  210 (792)
Q Consensus       186 ~~L~~~~~~lr~llda~P~~vw~~D  210 (792)
                      .+++.-...+.   +-++.||.+..
T Consensus       259 ~rik~lVkKYS---~FI~fPI~l~~  280 (824)
T PTZ00130        259 KKLMDLISKYS---QFIQFPIYLLH  280 (824)
T ss_pred             HHHHHHHHHHC---CCCCCCEEEEC
T ss_conf             88999999851---36652258720


No 128
>PTZ00108 DNA topoisomerase II; Provisional
Probab=94.13  E-value=0.057  Score=31.39  Aligned_cols=15  Identities=13%  Similarity=0.454  Sum_probs=9.5

Q ss_pred             EEEECCCCEEEEECH
Q ss_conf             289968984886405
Q gi|255764476|r  447 VAVFGPDGRIKLSNP  461 (792)
Q Consensus       447 vav~~~dgr~~~~N~  461 (792)
                      +..|+++|+|.-++.
T Consensus      1032 m~~Fd~~g~i~kY~~ 1046 (1506)
T PTZ00108       1032 MTLFDPNLKLQRYST 1046 (1506)
T ss_pred             EEEECCCCCEEECCC
T ss_conf             689889999664599


No 129
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=94.02  E-value=0.0059  Score=38.14  Aligned_cols=12  Identities=42%  Similarity=0.653  Sum_probs=7.4

Q ss_pred             EEEEECCCCCEE
Q ss_conf             997356998689
Q gi|255764476|r  402 VIVTSNPRGGTI  413 (792)
Q Consensus       402 v~~~~~p~Gg~~  413 (792)
                      |...++++||.-
T Consensus       270 VN~I~T~~GGTH  281 (633)
T PRK05559        270 VNLIPTPDGGTH  281 (633)
T ss_pred             ECCCCCCCCCCH
T ss_conf             887057999876


No 130
>KOG3558 consensus
Probab=93.95  E-value=0.26  Score=26.85  Aligned_cols=63  Identities=6%  Similarity=0.011  Sum_probs=34.5

Q ss_pred             HHHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             986069978999817997001413412321898320234443211894678989999999985
Q gi|255764476|r   74 SLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK  136 (792)
Q Consensus        74 all~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l~~  136 (792)
                      -+|.+-++-+.+.+.++...+|+-+...++|+.|-+....+.-+++||-|..++.+.+.....
T Consensus       123 ~iLqsLDGFVm~l~~dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~DheE~~eqL~l~~~  185 (768)
T KOG3558         123 HILQSLDGFVMALTQDGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCDHEEIAEQLGLRLT  185 (768)
T ss_pred             HHHHHCCCEEEEECCCCCEEEEECHHHHHHCCCCEEEECCHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf             487632443899816787799820357661711024305413212576678999987433568


No 131
>TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils .    Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively.   This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II .   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=93.71  E-value=0.051  Score=31.73  Aligned_cols=51  Identities=16%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9988889999999999999999999966663225899999999973577788
Q gi|255764476|r  550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS  601 (792)
Q Consensus       550 ~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~  601 (792)
                      -++..|..-..++.+.++-++ |+..|+-....+...+.-+.+++..+...+
T Consensus       588 L~~~~Le~~~~~~~~~~k~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (818)
T TIGR01059       588 LVGELLEDLVNAYLELEKRKN-LINRLERKAIRFSEELLIYQDLLEKELLEY  638 (818)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHCHHHHCH
T ss_conf             999999999999998863144-799998740435578887555302222001


No 132
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.52  E-value=0.19  Score=27.78  Aligned_cols=87  Identities=22%  Similarity=0.297  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHH-------------HCCCCEECCCCCCCCC
Q ss_conf             999999998867753888688999999879989999997889789778654-------------1488376268988885
Q gi|255764476|r  687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS-------------VFNRFVSNAHRGQRRG  753 (792)
Q Consensus       687 L~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~r-------------iF~~F~~~~~~~~~~G  753 (792)
                      +.-+...|+.||+||...| .|.|.+........+.|++--++=....-++             ..++-+.....+...|
T Consensus        64 vgYl~NELiENAVKfra~g-eIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLlieRiEanA~~~d~~g  142 (184)
T COG5381          64 VGYLANELIENAVKFRATG-EIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLIERIEANALESDCEG  142 (184)
T ss_pred             HHHHHHHHHHHHHCCCCCC-CEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             8898999998666015798-589999831406888730357885188899999998607929999999986035888765


Q ss_pred             CCHHHHHHHHHHHHCCCEEEE
Q ss_conf             663799999999961986999
Q gi|255764476|r  754 VGLGLSIVESFINLHGGHVSI  774 (792)
Q Consensus       754 tGLGLsiv~~iVe~hgG~I~v  774 (792)
                      +||||-.--+=-..|=|+|-+
T Consensus       143 SglGLLTlmsDYgA~faWiF~  163 (184)
T COG5381         143 SGLGLLTLMSDYGAQFAWIFV  163 (184)
T ss_pred             CCCCCEEHHHHHCCEEEEEEE
T ss_conf             664100012342332689983


No 133
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=93.47  E-value=0.51  Score=24.84  Aligned_cols=32  Identities=16%  Similarity=0.368  Sum_probs=19.2

Q ss_pred             HHHHHHHCCCCEEEECCCCCEEEECHHHHHHH
Q ss_conf             99998516800589815992898525789873
Q gi|255764476|r  195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT  226 (792)
Q Consensus       195 lr~llda~P~~vw~~D~dGri~~vN~A~~~~~  226 (792)
                      +.++++..|.|+++++.+|.++++|.+|.+..
T Consensus        21 l~~~i~~~~~PvCIRn~sG~Fi~~N~~F~~~F   52 (220)
T PRK13719         21 LTAFIDDYSIPACIRNEDGSFIFFNTLFSKEF   52 (220)
T ss_pred             HHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf             99999718996489778998301527899998


No 134
>KOG1979 consensus
Probab=93.41  E-value=0.16  Score=28.32  Aligned_cols=29  Identities=24%  Similarity=0.262  Sum_probs=14.3

Q ss_pred             EEEECCCCCCCEEECCCHHHCCCCCCHHHHHH
Q ss_conf             99981799700141341232189832023444
Q gi|255764476|r   83 TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS  114 (792)
Q Consensus        83 ~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~  114 (792)
                      +++-+|+-..-|+..+   ..|.-.++..+++
T Consensus        49 V~vk~GGLKLlQisDn---G~GI~reDl~ilC   77 (694)
T KOG1979          49 VLVKDGGLKLLQISDN---GSGIRREDLPILC   77 (694)
T ss_pred             EEEECCCEEEEEEECC---CCCCCHHHHHHHH
T ss_conf             9981597689998328---9861522468998


No 135
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=92.67  E-value=0.032  Score=33.11  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=14.0

Q ss_pred             HHHHHH-HHHHCCCEEEEEEECCCCEEEEEEEEE
Q ss_conf             999999-998539658999986897299983045
Q gi|255764476|r  127 LSKATE-KLRKEGQSFDLVAETQNDCAIKIEGRV  159 (792)
Q Consensus       127 l~~ai~-~l~~~g~~f~l~~~t~~g~~i~~~Gr~  159 (792)
                      ++.+++ .+...+....+++.....-.|.-.||-
T Consensus        94 vDNSvDEalaG~c~~I~V~l~~DgSvtV~DnGRG  127 (941)
T PTZ00109         94 IDNSVDEYNNFECNEIKIVIHKDDSVTIEDNGRG  127 (941)
T ss_pred             HHCHHHHHHCCCCCEEEEEEECCCCEEEEECCCC
T ss_conf             1256879861899668999947997899889976


No 136
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=91.92  E-value=0.043  Score=32.23  Aligned_cols=10  Identities=30%  Similarity=0.351  Sum_probs=5.8

Q ss_pred             EEEECCCCCE
Q ss_conf             9735699868
Q gi|255764476|r  403 IVTSNPRGGT  412 (792)
Q Consensus       403 ~~~~~p~Gg~  412 (792)
                      ...|+++||.
T Consensus       274 NnI~T~eGGT  283 (635)
T COG0187         274 NNIPTREGGT  283 (635)
T ss_pred             CCCCCCCCCH
T ss_conf             5855899860


No 137
>KOG1978 consensus
Probab=90.89  E-value=0.25  Score=26.95  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99999999999998516800589
Q gi|255764476|r  186 KKLSNHISVFKVLFDSLDFLVWH  208 (792)
Q Consensus       186 ~~L~~~~~~lr~llda~P~~vw~  208 (792)
                      ..+-.-.+.|..+--++-.++|-
T Consensus       168 ~k~i~li~~y~li~~~ir~~~~n  190 (672)
T KOG1978         168 VKLISLIQAYALISTAIKFLVSN  190 (672)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             66666677787631211013440


No 138
>KOG1229 consensus
Probab=90.11  E-value=0.69  Score=23.95  Aligned_cols=54  Identities=15%  Similarity=0.140  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC
Q ss_conf             9999999999985168005898159928985257898736778775661015853389
Q gi|255764476|r  188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK  245 (792)
Q Consensus       188 L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~  245 (792)
                      ++.-...| +.+|.-.+.|=+.|.|.-+.|||+||+++.++   ...+.++....-++
T Consensus       153 iRAcnalF-aaLD~c~eAiEI~~ddhViQYVNpAfE~mmG~---hkgEliGke~adlp  206 (775)
T KOG1229         153 IRACNALF-AALDECDEAIEICDDDHVIQYVNPAFENMMGC---HKGELIGKEEADLP  206 (775)
T ss_pred             HHHHHHHH-HHHHHHHHHHEECCCHHHHHHHCHHHHHHHCC---HHHHHCCCCHHHCC
T ss_conf             76418999-98862300320046346898735788863310---10212377222256


No 139
>KOG0355 consensus
Probab=88.59  E-value=0.62  Score=24.27  Aligned_cols=56  Identities=9%  Similarity=0.208  Sum_probs=26.6

Q ss_pred             CHHHHHHHHHHHHHHHHH-------CCCCC-CEEEEEEE-EECCEEEEEEEECCCCCCHHHHHHH
Q ss_conf             789999999999886775-------38886-88999999-8799899999978897897786541
Q gi|255764476|r  683 DRQRLLQIFSKILSNAMD-------FSSKG-STVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSV  738 (792)
Q Consensus       683 D~~rL~QVl~NLl~NAik-------~~~~g-g~I~i~~~-~~~~~v~i~V~D~G~GI~~e~~~ri  738 (792)
                      -+.-|.+-+.||-.|-+.       |.-.. ..++.-.. ..++.+.-.--|.|--|+|+.++-|
T Consensus       710 ge~sl~~ti~~l~q~~~gkdaa~~ryi~t~l~~~tr~~f~~~dd~ll~~~~~~~~~vep~y~pi~  774 (842)
T KOG0355         710 GEQSLMSTIVNLAQDFVGKDAASARYIFTKLSPLTRLLFPPADDLLLKYLNEDGQRVEPEYCPII  774 (842)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCE
T ss_conf             42769999998887505884023678988527365402788832676652257867175224414


No 140
>KOG1977 consensus
Probab=88.47  E-value=1.3  Score=21.97  Aligned_cols=16  Identities=31%  Similarity=0.351  Sum_probs=11.1

Q ss_pred             CCCHHHHHHHHHHHHC
Q ss_conf             5663799999999961
Q gi|255764476|r  753 GVGLGLSIVESFINLH  768 (792)
Q Consensus       753 GtGLGLsiv~~iVe~h  768 (792)
                      |-||-++=|-.||+..
T Consensus      1067 gD~L~~qEc~~lI~~L 1082 (1142)
T KOG1977        1067 GDGLSLQECCRLIEAL 1082 (1142)
T ss_pred             CCCCCHHHHHHHHHHH
T ss_conf             7765789999999988


No 141
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=87.64  E-value=0.54  Score=24.69  Aligned_cols=10  Identities=20%  Similarity=0.464  Sum_probs=5.6

Q ss_pred             CCCEEEEEEE
Q ss_conf             9818999973
Q gi|255764476|r  396 NGQTLHVIVT  405 (792)
Q Consensus       396 DGr~l~v~~~  405 (792)
                      +|+.++|..+
T Consensus        54 KGk~iSimg~   63 (236)
T COG0813          54 KGKKISVMGH   63 (236)
T ss_pred             CCCEEEEEEE
T ss_conf             3847899873


No 142
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IPR005737   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils .   This entry represents subunit B (parE) of topoisomerase IV from Gram negative bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II.   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=84.91  E-value=1  Score=22.84  Aligned_cols=49  Identities=29%  Similarity=0.407  Sum_probs=27.4

Q ss_pred             EECCCCCE-E---EEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             88789818-9---9997356998689994595799999999999999999999620343289
Q gi|255764476|r  392 WHLPNGQT-L---HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV  449 (792)
Q Consensus       392 w~l~DGr~-l---~v~~~~~p~Gg~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav  449 (792)
                      | +|+|.. +   .|..-|++|||.-        ..-|.+..-..++...|....++-|+-.
T Consensus       266 W-~~~~~~~~~~SY~N~iPT~QGGTH--------~~GL~~~lL~a~~~f~E~~~~~P~~~~L  318 (647)
T TIGR01055       266 W-LPEGGELLMESYVNLIPTIQGGTH--------VNGLRQGLLDALREFCEMRNLLPRGVKL  318 (647)
T ss_pred             E-CCCCCHHHHHCCCCCCCCCCCCCH--------HHHHHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf             3-278840032041101578988710--------4578999999999988875188640221


No 143
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=82.51  E-value=3  Score=19.62  Aligned_cols=108  Identities=9%  Similarity=0.162  Sum_probs=60.5

Q ss_pred             HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCEE
Q ss_conf             9999962034328996898488640588878289878943898388988777630256114688998740265-443115
Q gi|255764476|r  436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSL  514 (792)
Q Consensus       436 q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~r~~~  514 (792)
                      ..+.+++|+--+...|.+++++++|+- .+||...+..++.+.      ..|.|...-    +.....+..+. +.+...
T Consensus       292 ~naif~~lP~Ditfvdk~diV~ffs~~-~rif~rt~sviGr~v------~~chpPksv----~iv~ki~~~fksG~kd~~  360 (409)
T COG2461         292 LNAIFKHLPVDITFVDKNDIVRFFSGG-ERIFPRTPSVIGRRV------QLCHPPKSV----HIVEKILKDFKSGEKDFA  360 (409)
T ss_pred             HHHHHHHCCCCEEEECCCCEEEECCCC-CEECCCCHHHHCCCC------CCCCCCCHH----HHHHHHHHHHHCCCCCHH
T ss_conf             999995388732785456627844896-320133767618715------578998427----899999998653774567


Q ss_pred             EEEEEECCEE-EEEEEEEECCCCC---EEEECCCCHHHHHHHHH
Q ss_conf             6899972503-8889999705887---66312320689999888
Q gi|255764476|r  515 QGTLELLSDS-VLEYSIIPLPNAQ---TMLTFVNVTDSVRAERA  554 (792)
Q Consensus       515 ~~~~~~~dG~-~~~~~~~pl~dg~---~l~~~~DIT~~k~~E~a  554 (792)
                      +.-+...|-. .+.|.++.--+|.   +|-..+|||.-|+.|-+
T Consensus       361 efw~~~~~~~i~i~Y~av~de~ge~~g~le~~qdi~~i~~l~ge  404 (409)
T COG2461         361 EFWINMGDKFIHIRYFAVKDEEGEYLGTLEVVQDITRIKELEGE  404 (409)
T ss_pred             HHHCCCCCCEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHCCCH
T ss_conf             77455787358999999875888366542232203777742340


No 144
>KOG0019 consensus
Probab=81.15  E-value=1.7  Score=21.31  Aligned_cols=10  Identities=10%  Similarity=0.388  Sum_probs=6.2

Q ss_pred             CCEEEECCCC
Q ss_conf             0058981599
Q gi|255764476|r  204 FLVWHRDQAG  213 (792)
Q Consensus       204 ~~vw~~D~dG  213 (792)
                      -|+|.++++-
T Consensus       243 KpiW~rnp~d  252 (656)
T KOG0019         243 KAIWTMNPKE  252 (656)
T ss_pred             CCCCCCCCHH
T ss_conf             7631369022


No 145
>KOG0020 consensus
Probab=80.87  E-value=3.4  Score=19.23  Aligned_cols=27  Identities=11%  Similarity=0.304  Sum_probs=19.1

Q ss_pred             EEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             899878999999999988677538886
Q gi|255764476|r  679 SFVADRQRLLQIFSKILSNAMDFSSKG  705 (792)
Q Consensus       679 ~v~~D~~rL~QVl~NLl~NAik~~~~g  705 (792)
                      .+.-|+..+.--+.|.+.-.+..+|..
T Consensus       724 f~L~d~~~fadrIe~~lr~sL~is~Da  750 (785)
T KOG0020         724 FILQDTKDFADRIENMLRQSLNISPDA  750 (785)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             402566788999999998525999421


No 146
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=80.80  E-value=3.4  Score=19.21  Aligned_cols=102  Identities=14%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf             99999999985168005898159928985257898736778775661015853389678999986125787034578886
Q gi|255764476|r  190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL  269 (792)
Q Consensus       190 ~~~~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  269 (792)
                      +.+..+..+++++|.||-+.|.++++.|+|+--...+.   .   ..++..    .....+............   ..+.
T Consensus        72 ~~~~~~~~al~nmPiGii~~~e~~~veW~Npf~~~if~---~---~~~~~~----~~~~~~~il~~~~~~~~~---~~~~  138 (655)
T COG3887          72 QAEKSLEEALTNMPIGIILFNETNKVEWVNPFASKIFN---K---NEIGES----LSELIPEILKQLARNDEK---QYIK  138 (655)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHCC---H---HHHHHH----HHHHHHHHHHHHHCCCCC---EEEE
T ss_conf             99989999998488239998688956886688997467---5---355566----777759999987357855---3899


Q ss_pred             ECCEEEEEEEEEEECCCCEEEEEEEHHHHHHHHHHHHHH
Q ss_conf             569078999997632895299983045899988788999
Q gi|255764476|r  270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT  308 (792)
Q Consensus       270 ~~G~rr~~~v~~~~~~~G~~Gia~DITErk~ae~aLrr~  308 (792)
                      .+.  +.|++.-.+..  .+-+..|+|+..+.+++.+..
T Consensus       139 i~e--~~y~~~~~~~~--~liYf~DvT~~~~~~~~~~~~  173 (655)
T COG3887         139 INE--KKYDVYFDSDK--RLIYFFDVTEEEAIEEEYENS  173 (655)
T ss_pred             ECC--EEEEEEEECCC--CEEEEEECCHHHHHHHHHHCC
T ss_conf             735--48999980688--779999560899999998604


No 147
>PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional
Probab=72.35  E-value=5.7  Score=17.68  Aligned_cols=21  Identities=10%  Similarity=0.199  Sum_probs=11.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             206899998888999999999
Q gi|255764476|r  544 NVTDSVRAERALTEKNEALRK  564 (792)
Q Consensus       544 DIT~~k~~E~aL~e~~eale~  564 (792)
                      .+...+..|++|.+.+++|++
T Consensus        27 ~~~~q~~Le~eLe~~k~el~~   47 (134)
T PRK11677         27 KLRQQQALQYELEKNKAELEE   47 (134)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
T ss_conf             116799999999999999999


No 148
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=63.02  E-value=8.7  Score=16.43  Aligned_cols=76  Identities=13%  Similarity=0.048  Sum_probs=51.0

Q ss_pred             CEEEEEECCCCCEEEECHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCEEEEEEEECCC
Q ss_conf             68999956986089987899999999998867---------7538886---------88999999879989999997889
Q gi|255764476|r  667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNA---------MDFSSKG---------STVILKAARDNGDFIFSVKNNGS  728 (792)
Q Consensus       667 i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NA---------ik~~~~g---------g~I~i~~~~~~~~v~i~V~D~G~  728 (792)
                      -.+.+|+-.-.+.+..|+..|++++...+..+         -+|.|.|         +.|.|.++.+.+.+.+.|-=.|.
T Consensus         6 ~Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~gatil~~~~h~F~P~GvT~v~lLaESHisiHTwPE~g~aavDiftCg~   85 (127)
T PRK03124          6 RHVIAELYGCDFDKLNDMEFIEDIMVDAALKAGAEVREVAFHKFAPQGVSGVVVISESHLTIHTWPEHGYAAVDVFTCGD   85 (127)
T ss_pred             EEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECCCCCEEEEEEEECCC
T ss_conf             09999998878366879999999999999984997987883865999689999940216899966768859999994599


Q ss_pred             CCCHHHHHHHCCCC
Q ss_conf             78977865414883
Q gi|255764476|r  729 SIPEDMCKSVFNRF  742 (792)
Q Consensus       729 GI~~e~~~riF~~F  742 (792)
                      .+.|+..-+....+
T Consensus        86 ~~~P~~a~~~L~~~   99 (127)
T PRK03124         86 RVDPWDAANYIAEG   99 (127)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             99999999999998


No 149
>pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=60.22  E-value=9.7  Score=16.10  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=22.6

Q ss_pred             HCCCCEEEEC--CCCEEEEECHHHHHHHCCCHHHHCCCC
Q ss_conf             2034328996--898488640588878289878943898
Q gi|255764476|r  442 HLSEGVAVFG--PDGRIKLSNPAFRSLWKTEENRLSPGT  478 (792)
Q Consensus       442 ~l~e~vav~~--~dgr~~~~N~a~~~l~g~~~~~l~~~~  478 (792)
                      +.+.+|.-.+  +|-.+.|.|.+..+||+++-+++.+-|
T Consensus        39 ~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lp   77 (148)
T pfam08670        39 HHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQDLP   77 (148)
T ss_pred             CCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHCCC
T ss_conf             399789976799897465414999999668899984596


No 150
>pfam06305 DUF1049 Protein of unknown function (DUF1049). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=59.86  E-value=9.8  Score=16.06  Aligned_cols=42  Identities=19%  Similarity=0.277  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             789999999999999999999999999999999999999999
Q gi|255764476|r   23 KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE   64 (792)
Q Consensus        23 ~~~~~~~~~g~~~~~~~~~~~~~r~r~~~~~~~~~l~~~~~~   64 (792)
                      -+..++...|++...+.+..+.+|.|.+..+.++++++...+
T Consensus        34 l~ll~~f~~G~~lg~L~~~~~~l~~r~~~r~l~k~lk~l~~e   75 (80)
T pfam06305        34 LLLLIAFALGFLLGWLISLPFYLRLRRRLRRLKKQLKKLEKE   75 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999


No 151
>TIGR02373 photo_yellow photoactive yellow protein; InterPro: IPR012130   Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by IPR012743 from INTERPRO is required for its biosynthesis. The modified Cys is in a PAS domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.; GO: 0009881 photoreceptor activity, 0007602 phototransduction, 0018298 protein-chromophore linkage.
Probab=58.39  E-value=1.3  Score=22.17  Aligned_cols=55  Identities=25%  Similarity=0.322  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHH
Q ss_conf             9999999999962034328996898488640588878289878943898388988
Q gi|255764476|r  430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA  484 (792)
Q Consensus       430 ~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~  484 (792)
                      +++.++-.+.+|.|+=|-..+|.+|+|.-+|.+=.+|.|-+|..++|+--+.++.
T Consensus        14 n~la~m~~A~~d~LpfGAiqlD~~G~I~~YN~aEg~l~GR~P~~VIGrnFF~evA   68 (126)
T TIGR02373        14 NTLARMGDAQLDSLPFGAIQLDGSGRILKYNAAEGELTGRDPERVIGRNFFKEVA   68 (126)
T ss_pred             HHHCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             6632689864225541048866988302110110001387977322743423327


No 152
>TIGR01083 nth endonuclease III; InterPro: IPR005759    The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=51.44  E-value=6.4  Score=17.33  Aligned_cols=12  Identities=25%  Similarity=0.363  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             689999888899
Q gi|255764476|r  546 TDSVRAERALTE  557 (792)
Q Consensus       546 T~~k~~E~aL~e  557 (792)
                      +|-.++|++|.+
T Consensus       152 ~dp~~vE~~L~~  163 (192)
T TIGR01083       152 KDPDKVEEELLK  163 (192)
T ss_pred             CCHHHHHHHHHH
T ss_conf             898999999987


No 153
>pfam08446 PAS_2 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=47.03  E-value=16  Score=14.69  Aligned_cols=28  Identities=14%  Similarity=0.099  Sum_probs=19.7

Q ss_pred             CCCCEEEEECHHHHHHHCCCHHHHCCCC
Q ss_conf             6898488640588878289878943898
Q gi|255764476|r  451 GPDGRIKLSNPAFRSLWKTEENRLSPGT  478 (792)
Q Consensus       451 ~~dgr~~~~N~a~~~l~g~~~~~l~~~~  478 (792)
                      .+|+++..+..-..+++|.+++.+.+++
T Consensus        23 ~~~~~I~qaS~N~~~~lG~~~~~llG~~   50 (107)
T pfam08446        23 EPDFRVLQASENAAEMLGLVAQQLLGTD   50 (107)
T ss_pred             CCCCEEEEECCCHHHHHCCCHHHHCCCC
T ss_conf             7998799985588888585958985996


No 154
>pfam05127 DUF699 Putative ATPase (DUF699). This putative domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often associated with pfam00583. This domain is found in isolation in the uncharacterized protein HI1254 from Haemophilus influenzae.
Probab=46.42  E-value=16  Score=14.63  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=31.0

Q ss_pred             EEEEEEECCCCCCHHHHHHHCCCCEE---CCCCCCCCCCCHHHHH
Q ss_conf             99999978897897786541488376---2689888856637999
Q gi|255764476|r  719 FIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSI  760 (792)
Q Consensus       719 v~i~V~D~G~GI~~e~~~riF~~F~~---~~~~~~~~GtGLGLsi  760 (792)
                      .-+-|-|.--+||...+.++.+.|.+   .++..++.|||=|+++
T Consensus        76 ~DllvVDEAAaIP~p~L~~ll~~~~rvvfaTTihGYEGtGRgF~l  120 (160)
T pfam05127        76 ADLLVVDEAAAIPLPLLKQLLEGFPRVVFATTVHGYEGTGRGFSL  120 (160)
T ss_pred             CCEEEEEHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHH
T ss_conf             768997324218889999998508869999633651145812456


No 155
>TIGR01622 SF-CC1 splicing factor, CC1-like family; InterPro: IPR006509   These sequences represent a subfamily of RNA splicing factors including the Pad-1 protein (Neurospora crassa), CAPER (mouse) and CC1.3 (human). All are characterised by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 human paralogs, two) RNA recognition domains. These splicing factors are closely related to the U2AF splicing factor family (IPR006529 from INTERPRO). ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=46.10  E-value=13  Score=15.32  Aligned_cols=12  Identities=25%  Similarity=0.387  Sum_probs=4.1

Q ss_pred             CCCEEEECCCCH
Q ss_conf             887663123206
Q gi|255764476|r  535 NAQTMLTFVNVT  546 (792)
Q Consensus       535 dg~~l~~~~DIT  546 (792)
                      +|.+.+-|..|.
T Consensus       484 ~G~vY~kf~~v~  495 (531)
T TIGR01622       484 AGKVYLKFDSVE  495 (531)
T ss_pred             CCCEEEECCCHH
T ss_conf             852676327489


No 156
>PRK10506 hypothetical protein; Provisional
Probab=43.94  E-value=17  Score=14.38  Aligned_cols=126  Identities=13%  Similarity=0.016  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHH
Q ss_conf             57899999999999999999999999999999999999999999999999999860699789998179970014134123
Q gi|255764476|r   22 CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQ  101 (792)
Q Consensus        22 ~~~~~~~~~~g~~~~~~~~~~~~~r~r~~~~~~~~~l~~~~~~l~~~~~r~~all~~~~~~~~~w~~~~~~~~~~~~~~~  101 (792)
                      .|+++.-.+.++++...+...-...++.++....+++...+..++     .+|+-.+.+.  +.|-..+....+.+.-..
T Consensus        10 iEllvvi~ii~il~~~a~p~~~~~~q~~~L~~~a~~l~~fL~~~r-----~~A~~~N~~~--~l~~~~~~~~Wcl~s~~~   82 (155)
T PRK10506         10 IETLVAMTLVVILSAWGLYGWQYWQQQQRLWQTAQQLRDFLLYLR-----EDANWHNRDH--ILWVIREGQGWCLVSSVA   82 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCCE--EEEEEECCCCCEEEECCC
T ss_conf             999999999999998877779999999999999999999999999-----9999858977--999994799518987898


Q ss_pred             HCCCCCCHHHHHHHHHCCCHHHHHHH-----HHHHHHHHHCCCEEEEEEECCCCEE---EEEEEE
Q ss_conf             21898320234443211894678989-----9999999853965899998689729---998304
Q gi|255764476|r  102 RIDIPQTDTDLLSFENWLKFHHYIKL-----SKATEKLRKEGQSFDLVAETQNDCA---IKIEGR  158 (792)
Q Consensus       102 ~~g~~~~~~~~l~f~~wl~p~~a~~l-----~~ai~~l~~~g~~f~l~~~t~~g~~---i~~~Gr  158 (792)
                      ....- ......   .+.+|..-..+     .-+.-.+|.++.++.+++..++|++   |-..||
T Consensus        83 ~~~~C-~~~~~~---~~~~~~~~v~l~~~~~~~~F~G~RnTa~~G~i~L~n~ag~~rvvIS~~GR  143 (155)
T PRK10506         83 GATTC-TGSSPF---VFVPPWPDVEIADLTPSLAFFGLRNTAWAGHIRLKNSAGEWRLVISSWGR  143 (155)
T ss_pred             CCCCC-CCCCCC---CCCCCCCCEEEEECCCCEEEECCCCCCCCCEEEEECCCCCEEEEEECCCE
T ss_conf             78876-656654---21688898177751675366455687538589998799878999975854


No 157
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=43.57  E-value=18  Score=14.34  Aligned_cols=60  Identities=17%  Similarity=0.280  Sum_probs=38.8

Q ss_pred             EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCE
Q ss_conf             9987899999999998867753888688999999879989999997889789778654148837
Q gi|255764476|r  680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV  743 (792)
Q Consensus       680 v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~  743 (792)
                      +.-.-..-.-....++.|.|..+|.  ++++....+.+.+.+-+=|.+  =|++..++|=++|+
T Consensus        94 v~v~~~~~sd~~~~~lAn~ITLTPG--Tl~vdvd~d~~~l~VH~Ld~~--d~e~~~~~i~~~~E  153 (161)
T PRK08965         94 VAVPLDLRSDLALTALANIITLTPG--TVVVEISRDRRTLLVHVLDLD--DPEALIREIKQRYE  153 (161)
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCC--CEEEEEECCCCEEEEEEEECC--CHHHHHHHHHHHHH
T ss_conf             9996777987999999998743678--679998668998999972489--99999999889999


No 158
>TIGR01605 PYST-D Plasmodium yoelii subtelomeric family PYST-D; InterPro: IPR006492    The proteins in this set represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. These genes are generally very short (ca. 50 residues). There are no obvious homologs to these genes in any other organism. .
Probab=42.49  E-value=13  Score=15.18  Aligned_cols=11  Identities=64%  Similarity=0.921  Sum_probs=6.4

Q ss_pred             CHHHHHHHHHH
Q ss_conf             63799999999
Q gi|255764476|r  755 GLGLSIVESFI  765 (792)
Q Consensus       755 GLGLsiv~~iV  765 (792)
                      ||||||+=.+|
T Consensus        13 GLGlSi~LhLI   23 (55)
T TIGR01605        13 GLGLSITLHLI   23 (55)
T ss_pred             CCHHHHHHHHH
T ss_conf             00488999999


No 159
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=40.98  E-value=19  Score=14.08  Aligned_cols=157  Identities=14%  Similarity=0.079  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHH--HHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             999999999999999985168005898159928985257--898736778775661015853389678999986125787
Q gi|255764476|r  183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS--YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK  260 (792)
Q Consensus       183 ~~~~~L~~~~~~lr~llda~P~~vw~~D~dGri~~vN~A--~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~  260 (792)
                      .-.+-.+...+.|-..+-..|..+.+.|.+|.++-.+-.  +-.-....+.-           ......+...-+..-++
T Consensus        67 ~LL~iA~~~L~~L~~~v~~~~~~vLLtD~~GViL~~~G~~~~~~~~rk~gl~-----------~Ga~WSE~~~GTNgIGT  135 (606)
T COG3284          67 ALLTIAQPELDRLFQAVAGSGCCVLLTDADGVILERRGDPRDDEDFRKAGLW-----------LGAVWSEPREGTNGIGT  135 (606)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCHHHHHHHHHHCCC-----------CCCCCCCCCCCCCCHHH
T ss_conf             8999868999999998368984899985853599852671044566663453-----------36603533456440213


Q ss_pred             EEEEEEEEEECCEEEE------EEEEEEEC--CCCEEEEEEEHHHHH--------------------HHHHHH--HHHH-
Q ss_conf             0345788865690789------99997632--895299983045899--------------------988788--9999-
Q gi|255764476|r  261 NFCETVSTLEHGNNKS------YKIVRVLN--SFGEAGIAIDVSKEI--------------------TVNDQL--THTY-  309 (792)
Q Consensus       261 ~~~~~~~~~~~G~rr~------~~v~~~~~--~~G~~Gia~DITErk--------------------~ae~aL--rr~~-  309 (792)
                      ...+..++++.|+.++      +..+..|.  +.|.+.=+.|||-.+                    ..|.++  +.+. 
T Consensus       136 cLve~~aVtI~~~qHF~~~~~~lsCsAaPI~D~qG~L~gVLDISs~r~~~~~~s~~~~~~iV~~~ar~IE~~~~~~~~~~  215 (606)
T COG3284         136 CLVEGEAVTIHGDQHFIQAHHGLSCSAAPIFDEQGELVGVLDISSCRSDLSEASQPLTLAIVTDAARRIEAELFLAAFEG  215 (606)
T ss_pred             HHCCCCCEEEEHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             21027636985023576616573466513366878479999740587622233348999999999999999999875375


Q ss_pred             ----------HHHHHCCCCEEEECCCCEEEEECHHHHHHHCCC-HHHHHCCC
Q ss_conf             ----------998430895999848980898536888550999-78960499
Q gi|255764476|r  310 ----------EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNP  350 (792)
Q Consensus       310 ----------e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~-~~~l~~~p  350 (792)
                                +.++..+.+..++|.++++.-.|++..++.+.+ ..-+.+.|
T Consensus       216 ~~~lr~~~~p~~~d~~~~~~lavd~~grvl~at~aA~~~La~~~~~~l~g~p  267 (606)
T COG3284         216 HWLLRIALAPDYLDSQSEALLAVDQDGRVLGATRAARQLLALTDRQRLIGQP  267 (606)
T ss_pred             CHHHHHHCCCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHCCCHHHHHHCCC
T ss_conf             2677776185545766540001257665553228899762344666750577


No 160
>TIGR00107 deoD purine nucleoside phosphorylase; InterPro: IPR004402 Purine nucleoside phosphorylase 2.4.2.1 from EC also called inosine phosphorylase (pnp) cleave guanosine or inosine to respective bases and sugar-1-phosphate molecules. These enzymes are involved in the salvage of nucleotides and nucleosides.; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=40.59  E-value=19  Score=14.04  Aligned_cols=10  Identities=20%  Similarity=0.464  Sum_probs=6.9

Q ss_pred             CCCEEEEEEE
Q ss_conf             9818999973
Q gi|255764476|r  396 NGQTLHVIVT  405 (792)
Q Consensus       396 DGr~l~v~~~  405 (792)
                      -||+++|..+
T Consensus        50 KGk~IsvmGh   59 (234)
T TIGR00107        50 KGKKISVMGH   59 (234)
T ss_pred             CCCEEEEEEC
T ss_conf             4635888640


No 161
>KOG0501 consensus
Probab=40.49  E-value=19  Score=14.03  Aligned_cols=84  Identities=6%  Similarity=0.060  Sum_probs=46.4

Q ss_pred             CEEECCCHHHCCCCCCHH----HHHH--HHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEEC-----
Q ss_conf             014134123218983202----3444--32118946789899999999853965899998689729998304557-----
Q gi|255764476|r   93 PEIIGQLHQRIDIPQTDT----DLLS--FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG-----  161 (792)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~----~~l~--f~~wl~p~~a~~l~~ai~~l~~~g~~f~l~~~t~~g~~i~~~Gr~~g-----  161 (792)
                      .++....+...|+.+.+.    -..+  +|.....+....+++.++..+.  ..|++-+..++-..+|.--..+.     
T Consensus        43 VY~NdgFcKlsGY~RAevMQKs~tc~FMyGEltdk~ti~k~~~t~eN~~~--~qfEillyKKN~TPvW~~vqiAPIrNe~  120 (971)
T KOG0501          43 VYCNDGFCKLSGYHRAEVMQKSCTCSFMYGELTDKGTIEKVRQTLENYET--NQFEILLYKKNRTPVWLLVQIAPIRNEK  120 (971)
T ss_pred             EEECCCCHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf             88347621124745998862564233320133451169999999975431--2123676615898559999840235777


Q ss_pred             CEE---EEEEEECHHHHHHH
Q ss_conf             548---99874010689999
Q gi|255764476|r  162 SCA---FLRILSLDGIYSEL  178 (792)
Q Consensus       162 ~~a---~~r~~d~s~~~~~~  178 (792)
                      ..+   ++-|.|++...+-+
T Consensus       121 d~VVLfLctFkDIT~~KQPi  140 (971)
T KOG0501         121 DKVVLFLCTFKDITALKQPI  140 (971)
T ss_pred             CEEEEEEEECCCCHHHCCCC
T ss_conf             51899995114644323877


No 162
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=40.11  E-value=20  Score=13.99  Aligned_cols=77  Identities=12%  Similarity=0.086  Sum_probs=51.0

Q ss_pred             CCEEEEEECCCCCEEEECHHHHHHHHHHHHHHH---------HHCCCCCC---------EEEEEEEEECCEEEEEEEECC
Q ss_conf             968999956986089987899999999998867---------75388868---------899999987998999999788
Q gi|255764476|r  666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNA---------MDFSSKGS---------TVILKAARDNGDFIFSVKNNG  727 (792)
Q Consensus       666 ~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NA---------ik~~~~gg---------~I~i~~~~~~~~v~i~V~D~G  727 (792)
                      |..+-+++-.-.+....|...|++++.+.+.-+         -+|.|.|-         .|.|.++.+.+.+.+.|==.|
T Consensus         7 G~Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~~~tvl~~~~h~F~p~GvT~v~lLaESHiSiHTwPE~g~aaiDiFTCG   86 (123)
T PRK01706          7 GKHIIVDLWGVDFSLLDDMYFLEHHLVHAADLSGAHVLNVSTKEFDPHGVTVLVLLSESHLSIHTYPEKNFAAIDCYTCG   86 (123)
T ss_pred             CEEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECCCCCEEEEEEECCC
T ss_conf             42999999887834676999999999999998699899777387799988999997502689997565887999998579


Q ss_pred             CCCCHHHH-HHHCCCC
Q ss_conf             97897786-5414883
Q gi|255764476|r  728 SSIPEDMC-KSVFNRF  742 (792)
Q Consensus       728 ~GI~~e~~-~riF~~F  742 (792)
                      ..+.|+.. +.+-+.|
T Consensus        87 ~~~~p~~a~~~L~~~l  102 (123)
T PRK01706         87 TTVEPQIAIDYIVSIL  102 (123)
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9899999999999974


No 163
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=38.17  E-value=21  Score=13.79  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=17.5

Q ss_pred             EEEEEECC--CC-CEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             99973569--98-6899945957999999999999999
Q gi|255764476|r  401 HVIVTSNP--RG-GTIWMFENLTVQVDLETKYNTLVKV  435 (792)
Q Consensus       401 ~v~~~~~p--~G-g~~~~~~DITE~~~le~~~~~l~~~  435 (792)
                      +|+.-|..  +| |++.   ||+....++..+....+.
T Consensus       333 ~VVVKP~dGnqGrGVtv---nl~t~eev~~A~~~A~~~  367 (547)
T TIGR03103       333 AVVVKPVRGEQGKGISV---DVRTPDDLEAAIAKARQF  367 (547)
T ss_pred             CEEECCCCCCCCCCEEE---CCCCHHHHHHHHHHHHHH
T ss_conf             99977687888861587---259999999999999975


No 164
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112   This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=35.30  E-value=23  Score=13.49  Aligned_cols=86  Identities=23%  Similarity=0.358  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHCCCCCCEE-EEE--------EEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCC----CCCHH
Q ss_conf             999988677538886889-999--------99879989999997889789778654148837626898888----56637
Q gi|255764476|r  691 FSKILSNAMDFSSKGSTV-ILK--------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLG  757 (792)
Q Consensus       691 l~NLl~NAik~~~~gg~I-~i~--------~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~----GtGLG  757 (792)
                      |.+=|.|=++-|  |.+| ||+        .++..+-|++|   -|||=|.|..     -=.|-+..-.++    |.=||
T Consensus       536 FVHTLAnY~RqT--GAsVTTlRh~~ae~~fd~~rPDLVVLS---PGPGrP~dFd-----v~~Ti~aa~ar~lP~FGVCLG  605 (726)
T TIGR01815       536 FVHTLANYLRQT--GASVTTLRHSFAEELFDEERPDLVVLS---PGPGRPKDFD-----VKETIKAALARDLPVFGVCLG  605 (726)
T ss_pred             HHHHHHHHHHHC--CCEEEECCCHHHHHHHHCCCCCEEEEC---CCCCCCCCCC-----HHHHHHHHHHCCCCEEEEHHH
T ss_conf             377778887634--875530430478999732799889868---7312387544-----788999999728985774134


Q ss_pred             HHHHHHHHHHCCCEEEEEEEC--CCCEEEEEEEE
Q ss_conf             999999999619869999788--99439999973
Q gi|255764476|r  758 LSIVESFINLHGGHVSISSSD--EGVTTINCRIP  789 (792)
Q Consensus       758 Lsiv~~iVe~hgG~I~v~S~~--G~Gttf~v~lP  789 (792)
                      |   ++|||..||.+.+=..|  ||-|++.|.=|
T Consensus       606 L---Qg~vEafGG~L~vL~~P~HGK~srirVl~p  636 (726)
T TIGR01815       606 L---QGLVEAFGGELDVLAIPVHGKASRIRVLEP  636 (726)
T ss_pred             H---HHHHHHHCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             6---899987467213578887886336888368


No 165
>TIGR02791 VirB5 P-type DNA transfer protein VirB5; InterPro: IPR014158   This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation . VirB5 is homologous to the IncN (N-type) conjugation system protein TraC  as well as the P-type protein TrbJ and the F-type protein TraE ..
Probab=33.85  E-value=24  Score=13.45  Aligned_cols=12  Identities=17%  Similarity=0.177  Sum_probs=5.7

Q ss_pred             ECHHHHHHHCCC
Q ss_conf             405888782898
Q gi|255764476|r  459 SNPAFRSLWKTE  470 (792)
Q Consensus       459 ~N~a~~~l~g~~  470 (792)
                      .|.-|..+.|+.
T Consensus        69 ~k~~y~~~tG~~   80 (233)
T TIGR02791        69 AKQQYGSLTGLR   80 (233)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999843663


No 166
>pfam08066 PMC2NT PMC2NT (NUC016) domain. This domain is found at the N-terminus of 3'-5' exonucleases with HRDC domains, and also in putative exosome components.
Probab=33.24  E-value=25  Score=13.27  Aligned_cols=51  Identities=22%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999988514983000233069999999999999
Q gi|255764476|r  608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA  659 (792)
Q Consensus       608 e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~  659 (792)
                      ++-..|-+.+.||+.++|++|............. ...++.+--+.+++.+-
T Consensus        25 ~~~~~ld~~s~rLl~l~n~ll~~~~~~~~~~~~~-~~~~~e~~w~~vvdv~D   75 (91)
T pfam08066        25 EFSQSLDEQSQRLLSLINDLLQSAGSKSDIPDRS-DEDDVEDQWEGVVDVND   75 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHH
T ss_conf             8999999999999999999998447667887875-42318899999999999


No 167
>pfam00862 Sucrose_synth Sucrose synthase. Sucrose synthases catalyse the synthesis of sucrose from UDP-glucose and fructose. This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family pfam00534.
Probab=32.80  E-value=26  Score=13.22  Aligned_cols=157  Identities=15%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             EHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             04589998878899999984308959998489808985368885509997896049987999998975477766465788
Q gi|255764476|r  294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT  373 (792)
Q Consensus       294 DITErk~ae~aLrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~  373 (792)
                      -|....+.+.+|+...+.|..++.       +.-+.-+...++. +|+.+.|=+   +-..+++.++--..+-+.||-  
T Consensus       193 ri~~~~~L~~~l~~A~~~l~~~p~-------dtpy~~f~~~lq~-lGfE~GWG~---tA~Rv~Et~~lL~dlL~aPdp--  259 (550)
T pfam00862       193 RIQNISALQSALRKAEDYLSTLPP-------DTPYSEFEHKFQE-IGFERGWGD---TAERVLEMMHLLLDLLEAPDP--  259 (550)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHH-HCCCCCCCC---CHHHHHHHHHHHHHHHHCCCH--
T ss_conf             757899999999999999964999-------9986999999998-378877566---289999999999999868890--


Q ss_pred             HHHHHHHHHHCCCCCCE--EEECCCCCE--EEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99999987624676502--688789818--99997356998689994595799999999999999999999620343289
Q gi|255764476|r  374 WKENIFSVYKSSETHKD--TWHLPNGQT--LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV  449 (792)
Q Consensus       374 w~~~~~~~~~~~~~~~~--~w~l~DGr~--l~v~~~~~p~Gg~~~~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav  449 (792)
                         ..++.|-+.-|.-.  ....|-|--  --|...|.--|.++++.+-+   +.+|.....-++.|  -+|--+.-+.+
T Consensus       260 ---~~LE~Fl~RiPmvF~vvi~SpHGyFgQ~~VLG~PDTGGQVVYILDQv---RaLE~em~~rik~q--GLdi~P~IlIv  331 (550)
T pfam00862       260 ---STLETFLGRIPMVFNVVILSPHGYFAQANVLGYPDTGGQVVYILDQV---RALESEMLVRIKQQ--GLDITPRILIV  331 (550)
T ss_pred             ---HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHH---HHHHHHHHHHHHHC--CCCCCCEEEEE
T ss_conf             ---68999973265016899965764002357577899897599971777---88999999999975--88877608999


Q ss_pred             E--CCCCEEEEECHHHHHHHCCCH
Q ss_conf             9--689848864058887828987
Q gi|255764476|r  450 F--GPDGRIKLSNPAFRSLWKTEE  471 (792)
Q Consensus       450 ~--~~dgr~~~~N~a~~~l~g~~~  471 (792)
                      .  -+|-.=+.||...+++.|-..
T Consensus       332 TRLIP~a~GT~CnqrlEkv~gT~~  355 (550)
T pfam00862       332 TRLLPDAVGTTCNQRLEKVFGTEH  355 (550)
T ss_pred             EEECCCCCCCCCCCEEEECCCCCC
T ss_conf             740468889835853001058765


No 168
>pfam02675 AdoMet_dc S-adenosylmethionine decarboxylase. This family contains several S-adenosylmethionine decarboxylase proteins from bacterial and archaebacterial species. S-adenosylmethionine decarboxylase (AdoMetDC), a key enzyme in the biosynthesis of spermidine and spermine, is first synthesized as a proenzyme, which is cleaved post translationally to form alpha and beta subunits. The alpha subunit contains a covalently bound pyruvoyl group derived from serine that is essential for activity.
Probab=32.62  E-value=26  Score=13.20  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             CEEEECHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHC
Q ss_conf             089987899999999998867---------7538886---------8899999987998999999788978977865414
Q gi|255764476|r  678 GSFVADRQRLLQIFSKILSNA---------MDFSSKG---------STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF  739 (792)
Q Consensus       678 ~~v~~D~~rL~QVl~NLl~NA---------ik~~~~g---------g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF  739 (792)
                      +.+..|...|++++.+++.-+         -+|.|.|         +.|.+.++.+.+.+.+.|-=.|.++.|+..-+..
T Consensus        11 ~~~L~d~~~i~~~l~~a~~~~~~tvl~~~~~~f~p~Gvt~v~ll~ESHisiHTwPE~g~aaiDiftCg~~~~p~~a~~~l   90 (107)
T pfam02675        11 ADLLNDAERLERILREAAKAAGATLLGIAFHKFEPQGVSGVALLAESHISIHTWPEYGYAAVDVFTCGEHADPWKALEYL   90 (107)
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf             46787999999999999998799899999897599988999992266389998268893899997178989999999999


Q ss_pred             C
Q ss_conf             8
Q gi|255764476|r  740 N  740 (792)
Q Consensus       740 ~  740 (792)
                      .
T Consensus        91 ~   91 (107)
T pfam02675        91 K   91 (107)
T ss_pred             H
T ss_conf             9


No 169
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062   Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ  and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process.
Probab=32.59  E-value=26  Score=13.20  Aligned_cols=37  Identities=11%  Similarity=0.021  Sum_probs=30.1

Q ss_pred             EEEEECCCC-------EE-E-EE--EEHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             997632895-------29-9-98--30458999887889999998430
Q gi|255764476|r  279 IVRVLNSFG-------EA-G-IA--IDVSKEITVNDQLTHTYEILHNL  315 (792)
Q Consensus       279 v~~~~~~~G-------~~-G-ia--~DITErk~ae~aLrr~~e~Ld~l  315 (792)
                      -|++|+|||       .. . -.  +.||.=+.+.+-|+-|++.+++.
T Consensus       169 GTEVPvPGGetGGDaDA~e~l~~hel~VT~PeaA~~Tl~~HR~AF~~~  216 (430)
T TIGR02810       169 GTEVPVPGGETGGDADALEALQEHELAVTTPEAARETLEAHRKAFAAR  216 (430)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             102248878887650467665304778888888999999999999871


No 170
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727   This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=32.20  E-value=26  Score=13.16  Aligned_cols=38  Identities=11%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             EECCEEEEEEEECCCCCCHHHHHHHCCCCEE-CCCCCCC
Q ss_conf             8799899999978897897786541488376-2689888
Q gi|255764476|r  714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR  751 (792)
Q Consensus       714 ~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~-~~~~~~~  751 (792)
                      ..|..+.++.-|||-|=+.-.=|=|+-|||| ++.-|+|
T Consensus       645 e~Gh~vtLELlDNGAGAD~~KNDGiYsRYFT~Y~~NgRY  683 (874)
T TIGR00868       645 ENGHTVTLELLDNGAGADTVKNDGIYSRYFTAYDGNGRY  683 (874)
T ss_pred             CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCE
T ss_conf             799789988641776656600583122012021678835


No 171
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase; InterPro: IPR014120   This entry contains solanesyl diphosphate synthases from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterised by heterologous expression as a solanesyl diphosphate synthase..
Probab=31.69  E-value=24  Score=13.40  Aligned_cols=28  Identities=32%  Similarity=0.346  Sum_probs=12.9

Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf             999988889--9999999999999999999
Q gi|255764476|r  548 SVRAERALT--EKNEALRKADEIKNSFVQH  575 (792)
Q Consensus       548 ~k~~E~aL~--e~~eale~a~~lk~~F~~~  575 (792)
                      .+-.|+||.  +...+++++-.+..+++..
T Consensus       267 ~~DLe~AL~lv~~~~aI~k~rELA~~~A~~  296 (325)
T TIGR02749       267 KGDLEQALELVRKSGAIKKARELAKEQAQL  296 (325)
T ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             145799999998237215789999999999


No 172
>pfam01899 MNHE Na+/H+ ion antiporter subunit. Subunit of a Na+/H+ Prokaryotic antiporter complex.
Probab=30.37  E-value=28  Score=12.96  Aligned_cols=52  Identities=10%  Similarity=0.140  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEE
Q ss_conf             9999988677538886889999998799899999978897897786541488376
Q gi|255764476|r  690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS  744 (792)
Q Consensus       690 Vl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~  744 (792)
                      .-.-++.|.|..+|.  ++++....+.+.+.+.+-|-- .-+++..+.|-++|++
T Consensus        48 ~~~~llansITLTPG--Tltvdv~~d~~~L~VH~ld~~-~~~~~~~~~i~~~~E~   99 (106)
T pfam01899        48 TGLTILANSITLTPG--TLTIDLDPEERKLYVHWIDVE-TNSPRSSEDIVGPFEK   99 (106)
T ss_pred             HHHHHHHHHHHCCCC--EEEEEEECCCCEEEEEEEECC-CCCHHHHHHHHHHHHH
T ss_conf             899999987716997--799998189998999996679-9517899885188899


No 173
>PRK11564 stationary phase inducible protein CsiE; Provisional
Probab=29.10  E-value=29  Score=12.81  Aligned_cols=17  Identities=6%  Similarity=0.268  Sum_probs=9.1

Q ss_pred             EEEEEECCCCCCHHHHH
Q ss_conf             99999788978977865
Q gi|255764476|r  720 IFSVKNNGSSIPEDMCK  736 (792)
Q Consensus       720 ~i~V~D~G~GI~~e~~~  736 (792)
                      ++-|+++|+|+..-...
T Consensus       341 ~livc~~g~~~~~~l~~  357 (426)
T PRK11564        341 ILLLTGDNPELEAQIEQ  357 (426)
T ss_pred             EEEEECCCHHHHHHHHH
T ss_conf             89995897479999999


No 174
>pfam11853 DUF3373 Protein of unknown function (DUF3373). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.85  E-value=31  Score=12.67  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999998
Q gi|255764476|r   37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL   75 (792)
Q Consensus        37 ~~~~~~~~~r~r~~~~~~~~~l~~~~~~l~~~~~r~~al   75 (792)
                      +..+-+-+.++-..+.++.++|++++.++..+.++.+.-
T Consensus        22 a~~~d~~~~qkI~~L~~ql~eLk~~~~~~~~~v~~~e~~   60 (485)
T pfam11853        22 AAAADIDLLQKIEALKKELAELKAQLKDLNKRVDKTEKK   60 (485)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             134434499999999999999999999877665556665


No 175
>KOG3561 consensus
Probab=27.68  E-value=31  Score=12.65  Aligned_cols=85  Identities=18%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             94678989999999985396589999868972999830455754899874010689999999999999999999999998
Q gi|255764476|r  120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF  199 (792)
Q Consensus       120 ~p~~a~~l~~ai~~l~~~g~~f~l~~~t~~g~~i~~~Gr~~g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~lr~ll  199 (792)
                      .|+-..-|+.++..+|..-+. ..     .-..+.-+-++         .+++            .      .+.=..||
T Consensus        55 K~DK~tVLr~aV~~lr~~k~~-~~-----~~~~~~~d~Kp---------SflS------------~------~eL~~LmL  101 (803)
T KOG3561          55 KPDKLTVLRMAVDHLRLIKEQ-ES-----ENSSIDQDYKP---------SFLS------------N------DELTHLIL  101 (803)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HC-----CCCCCCCCCCC---------CCCC------------H------HHHHHHHH
T ss_conf             843789999999999987534-02-----45433556454---------4366------------1------77899999


Q ss_pred             HHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCC
Q ss_conf             51680058981599289852578987367787756610158
Q gi|255764476|r  200 DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES  240 (792)
Q Consensus       200 da~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~  240 (792)
                      +++.-.+|+..+||+|+||...-.   -..++..+|..+..
T Consensus       102 eAlDGF~fvV~cdG~IvyVSeSVT---~~L~y~QsDL~~qS  139 (803)
T KOG3561         102 EALDGFLFVVNCDGRIVYVSESVT---SVLGYLQSDLMGQS  139 (803)
T ss_pred             HHHCCEEEEEECCCEEEEEECCHH---HHHCCCHHHHHCCH
T ss_conf             974674899965745999955447---76586878873341


No 176
>KOG1232 consensus
Probab=27.59  E-value=31  Score=12.64  Aligned_cols=167  Identities=19%  Similarity=0.234  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             99999999999996666322589999999997357778899899999999999999999999999999885149830002
Q gi|255764476|r  563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY  642 (792)
Q Consensus       563 e~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~  642 (792)
                      |-.+...-+.+-.-.-+++.||+.---|--|.+..-  . |+. ++        -+.|...+.|.|+---|..|.+.-+.
T Consensus       301 ElmD~~s~~~~~~~l~~l~~pl~~~~pFyiLiETsG--S-n~d-hD--------~eKl~afl~d~lek~lIsDGv~a~d~  368 (511)
T KOG1232         301 ELMDNASMELVLEYLKDLHFPLEDEHPFYILIETSG--S-NKD-HD--------EEKLTAFLEDCLEKGLISDGVLAQDE  368 (511)
T ss_pred             HHHCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC--C-CCC-CC--------HHHHHHHHHHHHHHCCCCCCEECCCH
T ss_conf             764014789999874337897568986289998358--8-865-40--------99999999876651532055121788


Q ss_pred             EEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHC--CCC---CCEEEEEEEEECC
Q ss_conf             33069999999999999999848968999956986089987899999999998867753--888---6889999998799
Q gi|255764476|r  643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSK---GSTVILKAARDNG  717 (792)
Q Consensus       643 ~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~--~~~---gg~I~i~~~~~~~  717 (792)
                      ..+   .-+....+.+-..+.+++--.+.|+  ++|.         ..++||. |+.+-  .+.   |..+...--.+++
T Consensus       369 ~~~---~~lW~~Re~ip~a~~~~g~vyKyDv--SLpL---------~d~Y~lv-n~~~eRl~~~~l~~d~~gyGHlGDgN  433 (511)
T KOG1232         369 AEA---QKLWKIRESIPEALQKAGGVYKYDV--SLPL---------EDLYNLV-NVMKERLGEAALVGDIVGYGHLGDGN  433 (511)
T ss_pred             HHH---HHHHHHHHCCHHHHHHCCCEEEEEC--CCCH---------HHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             899---9999997412788975697788623--6628---------9999999-99998622144430201445445784


Q ss_pred             -EEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             -89999997889789778654148837626898888566379999999996198699997889
Q gi|255764476|r  718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE  779 (792)
Q Consensus       718 -~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G  779 (792)
                       ++-|+|+.-     -+.+++..+||                  |+..|..|+|.|..|-..|
T Consensus       434 lHLNia~~ef-----n~~iek~lePf------------------vYE~vs~~~GSISAEHGiG  473 (511)
T KOG1232         434 LHLNIAVREF-----NKEIEKLLEPF------------------VYEWVSKHKGSISAEHGIG  473 (511)
T ss_pred             EEEEEEHHHH-----HHHHHHHHHHH------------------HHHHHHHCCCCEECCCCCC
T ss_conf             2576339987-----68898753159------------------9998872487122000554


No 177
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=27.48  E-value=31  Score=12.62  Aligned_cols=72  Identities=17%  Similarity=0.098  Sum_probs=45.2

Q ss_pred             EEEEEECCCCCEEEECHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCEEEEEEEECCCC
Q ss_conf             8999956986089987899999999998867---------7538886---------889999998799899999978897
Q gi|255764476|r  668 RIKVISDGKLGSFVADRQRLLQIFSKILSNA---------MDFSSKG---------STVILKAARDNGDFIFSVKNNGSS  729 (792)
Q Consensus       668 ~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NA---------ik~~~~g---------g~I~i~~~~~~~~v~i~V~D~G~G  729 (792)
                      .+-+++-.-.+.+..|...|++++.+.+..+         -+|.|.|         +.|.+.++.+.+.+.+.|-=.|..
T Consensus         6 Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~~~~il~~~~~~f~p~GvT~v~ll~ESHisiHTwPE~g~aaiDiftCg~~   85 (112)
T TIGR03330         6 HLIVDLYGCDPEKLDDVEFIEEILLEAAKVAGATLVASHFHKFSPGGVSGVVLLAESHISIHTWPEYGYAAVDVFTCGDH   85 (112)
T ss_pred             EEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf             99999977795787799999999999999869979988869749997999999324369999867888499999863899


Q ss_pred             CCHHHHHHHC
Q ss_conf             8977865414
Q gi|255764476|r  730 IPEDMCKSVF  739 (792)
Q Consensus       730 I~~e~~~riF  739 (792)
                      ..|+..-+..
T Consensus        86 ~~p~~a~~~l   95 (112)
T TIGR03330        86 SDPEKAFEYL   95 (112)
T ss_pred             CCHHHHHHHH
T ss_conf             9999999999


No 178
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=26.97  E-value=32  Score=12.56  Aligned_cols=36  Identities=17%  Similarity=0.325  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHCC-CCCCEEEEECHHHHHHHHHHHH
Q ss_conf             9999999999885149-8300023306999999999999
Q gi|255764476|r  621 LNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSI  658 (792)
Q Consensus       621 ~~li~diLdls~i~aG-~~~l~~~~vdl~~~i~~~~~~~  658 (792)
                      .+|+..||+-  -.-| .-.|.+-..|+...+..+++.+
T Consensus       270 vEmCqklla~--tsGG~i~~LH~YTlNlEKA~~~Il~rL  306 (312)
T TIGR00677       270 VEMCQKLLAS--TSGGLIKGLHFYTLNLEKAALMILERL  306 (312)
T ss_pred             HHHHHHHHHH--CCCCCCCCCHHHHCCHHHHHHHHHHHC
T ss_conf             9999999850--378731342023301778999999847


No 179
>COG4362 Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism]
Probab=26.42  E-value=33  Score=12.50  Aligned_cols=72  Identities=14%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             EHHHHHHHHHHHHHHHHHH-H--HCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCC
Q ss_conf             0458999887889999998-4--308959998489808985368885509997896049987999998975477766
Q gi|255764476|r  294 DVSKEITVNDQLTHTYEIL-H--NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE  367 (792)
Q Consensus       294 DITErk~ae~aLrr~~e~L-d--~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe  367 (792)
                      |++..+.+.++|-.+...- +  .+---|.||.|..+...||+..-+.-||+.+  .|.|....+-+..+.-|-.++
T Consensus        78 dl~t~e~~~eal~~Hi~~Atn~GkirP~Isvf~P~~~~~iwN~QLIRYAgye~d--igDP~~~~~t~~~~~lGW~g~  152 (355)
T COG4362          78 DLNTEEEVYEALLQHITDATNGGKIRPTISVFGPGVRLKIWNPQLIRYAGYEND--IGDPISADFTDACERLGWQGE  152 (355)
T ss_pred             HCCCHHHHHHHHHHHHHHHCCCCEECCEEEEECCCCCCCCCCHHHHHHHCCCCC--CCCCCCHHHHHHHHHHCCCCC
T ss_conf             216499999999998876426973140488748998755467888765044356--898511489999998288888


No 180
>pfam07045 DUF1330 Protein of unknown function (DUF1330). This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=25.11  E-value=34  Score=12.34  Aligned_cols=33  Identities=15%  Similarity=0.237  Sum_probs=16.5

Q ss_pred             HHHHHHHHHCCCEEEEE-----EECCC---CEEEEEEEECC
Q ss_conf             99999999619869999-----78899---43999997347
Q gi|255764476|r  759 SIVESFINLHGGHVSIS-----SSDEG---VTTINCRIPSK  791 (792)
Q Consensus       759 siv~~iVe~hgG~I~v~-----S~~G~---Gttf~v~lP~~  791 (792)
                      ..+..+|+.|||++-+.     .-.|.   ..++.+.||+.
T Consensus         9 ~~~~~~i~~~gG~~l~rg~~~~~lEG~~~~~~~ViieFps~   49 (65)
T pfam07045         9 ALAGPALAKHGGRFLARGGAPEVLEGDWDPDRIVVIEFPSM   49 (65)
T ss_pred             HHHHHHHHHCCCEEEEECCCCEEEECCCCCCEEEEEECCCH
T ss_conf             97699999849999998798468625899876999981999


No 181
>PRK06841 short chain dehydrogenase; Provisional
Probab=23.73  E-value=36  Score=12.17  Aligned_cols=18  Identities=22%  Similarity=0.279  Sum_probs=6.9

Q ss_pred             EEHHHHHHHHHHHHHHHH
Q ss_conf             304589998878899999
Q gi|255764476|r  293 IDVSKEITVNDQLTHTYE  310 (792)
Q Consensus       293 ~DITErk~ae~aLrr~~e  310 (792)
                      .|||+....++......+
T Consensus        68 ~Dvt~~~~v~~~v~~~~~   85 (255)
T PRK06841         68 CDVSDSQSVEAAVAAAIS   85 (255)
T ss_pred             EECCCHHHHHHHHHHHHH
T ss_conf             846999999999999999


No 182
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=23.71  E-value=36  Score=12.16  Aligned_cols=21  Identities=10%  Similarity=0.063  Sum_probs=8.3

Q ss_pred             ECHHHHHHHHHHHHHHHHHCC
Q ss_conf             878999999999988677538
Q gi|255764476|r  682 ADRQRLLQIFSKILSNAMDFS  702 (792)
Q Consensus       682 ~D~~rL~QVl~NLl~NAik~~  702 (792)
                      |.|..+..+..=|+|++-.|.
T Consensus       224 g~pedia~~v~fL~Sd~ssyi  244 (259)
T PRK06124        224 GRPEEIAGAAVFLASPAASYV  244 (259)
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             599999999999958443586


No 183
>TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785   Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt.
Probab=23.26  E-value=25  Score=13.29  Aligned_cols=15  Identities=7%  Similarity=0.147  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             899999999998867
Q gi|255764476|r  684 RQRLLQIFSKILSNA  698 (792)
Q Consensus       684 ~~rL~QVl~NLl~NA  698 (792)
                      |..=+||.....+|+
T Consensus        42 P~YAk~V~~av~~g~   56 (143)
T TIGR01120        42 PDYAKEVVRAVLEGK   56 (143)
T ss_pred             CHHHHHHHHHHHCCC
T ss_conf             068999999974487


No 184
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.15  E-value=37  Score=12.09  Aligned_cols=105  Identities=12%  Similarity=0.145  Sum_probs=54.6

Q ss_pred             CCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCC-EEEEEEEEEECCEEEEEEEEEE
Q ss_conf             005898159928985257898736778775661015853389678999986125787-0345788865690789999976
Q gi|255764476|r  204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK-NFCETVSTLEHGNNKSYKIVRV  282 (792)
Q Consensus       204 ~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~rr~~~v~~~  282 (792)
                      ..--++++||++.|.+.+|--..+...+          +-.+++...+..-....+. ...+.++     +.|-|++..+
T Consensus        64 ~d~~I~~adG~v~w~l~~Y~Fll~~~~~----------~tVnPSLwRQaqLn~~~GLfkVtd~iY-----QVRG~DisNI  128 (655)
T COG2015          64 SDEGIKRADGKVVWRLDAYDFLLDGAAP----------DTVNPSLWRQAQLNAKHGLFKVTDGIY-----QVRGFDISNI  128 (655)
T ss_pred             CCHHEECCCCCEEEECCCCCCCCCCCCC----------CCCCHHHHHHHHHHHHCCEEEECCCEE-----EEECCCCCCE
T ss_conf             6121267998479874765535689983----------555988999988764257056236635-----7602013322


Q ss_pred             ECCCCEEE-EEEE-HHHHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             32895299-9830-45899988788999999843089599984
Q gi|255764476|r  283 LNSFGEAG-IAID-VSKEITVNDQLTHTYEILHNLTVAIAIFD  323 (792)
Q Consensus       283 ~~~~G~~G-ia~D-ITErk~ae~aLrr~~e~Ld~l~~~v~ifd  323 (792)
                      ..-.|..| |.+| .|--+.++++|.-..+-+-+.|.--+|+.
T Consensus       129 TfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYt  171 (655)
T COG2015         129 TFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYT  171 (655)
T ss_pred             EEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             7980785269981567828899999999976588974899961


No 185
>KOG1845 consensus
Probab=23.01  E-value=34  Score=12.36  Aligned_cols=11  Identities=9%  Similarity=-0.136  Sum_probs=4.1

Q ss_pred             HHHHHCCCCEE
Q ss_conf             99851680058
Q gi|255764476|r  197 VLFDSLDFLVW  207 (792)
Q Consensus       197 ~llda~P~~vw  207 (792)
                      ..+|.+|...|
T Consensus       157 nalDEi~~~~t  167 (775)
T KOG1845         157 NALDEITNGAT  167 (775)
T ss_pred             CCCCCCCCCCC
T ss_conf             55412346531


No 186
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114   This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=22.85  E-value=38  Score=12.05  Aligned_cols=10  Identities=30%  Similarity=0.441  Sum_probs=3.5

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999966663
Q gi|255764476|r  571 SFVQHVSYEL  580 (792)
Q Consensus       571 ~F~~~vSHEL  580 (792)
                      .|++..+.++
T Consensus       321 hFL~~a~~~l  330 (471)
T TIGR01818       321 HFLALAAKEL  330 (471)
T ss_pred             HHHHHHHHHC
T ss_conf             9999988742


No 187
>KOG4013 consensus
Probab=21.54  E-value=40  Score=11.88  Aligned_cols=17  Identities=18%  Similarity=0.515  Sum_probs=7.5

Q ss_pred             EEEEEECCCCCEEEEECC
Q ss_conf             999735699868999459
Q gi|255764476|r  401 HVIVTSNPRGGTIWMFEN  418 (792)
Q Consensus       401 ~v~~~~~p~Gg~~~~~~D  418 (792)
                      .++.--.|.+| -++|.|
T Consensus        61 P~ycMiRpR~G-DFvYsd   77 (255)
T KOG4013          61 PLYCMIRPRAG-DFVYSD   77 (255)
T ss_pred             CEEEEEECCCC-CCCCCH
T ss_conf             16999713778-741261


No 188
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase; InterPro: IPR012772    This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analogous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.; GO: 0008415 acyltransferase activity, 0019491 ectoine biosynthetic process.
Probab=21.40  E-value=34  Score=12.34  Aligned_cols=13  Identities=46%  Similarity=0.560  Sum_probs=6.1

Q ss_pred             EEEECHHHHHHHC
Q ss_conf             8864058887828
Q gi|255764476|r  456 IKLSNPAFRSLWK  468 (792)
Q Consensus       456 ~~~~N~a~~~l~g  468 (792)
                      |.=-|.|-.++|.
T Consensus       111 iTPdN~AS~aLF~  123 (162)
T TIGR02406       111 ITPDNEASRALFK  123 (162)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             0766668999999


No 189
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=20.96  E-value=41  Score=11.80  Aligned_cols=26  Identities=8%  Similarity=0.158  Sum_probs=12.5

Q ss_pred             CEEEECCCCEEEEECHHHHHHHCCCH
Q ss_conf             59998489808985368885509997
Q gi|255764476|r  318 AIAIFDQNRYLQFHNRSFVELWEIDL  343 (792)
Q Consensus       318 ~v~ifd~~~rl~~~N~a~~~l~gl~~  343 (792)
                      +++|+|.++++..+.+.+...|.+..
T Consensus         4 ~~vv~~~~g~vLL~rr~~~~~W~lPG   29 (120)
T cd04680           4 RAVVTDADGRVLLVRHTYGPGWYLPG   29 (120)
T ss_pred             EEEEECCCCEEEEEEECCCCEEECCC
T ss_conf             99999299909999867999199995


No 190
>TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820    This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity.
Probab=20.71  E-value=42  Score=11.76  Aligned_cols=26  Identities=8%  Similarity=-0.078  Sum_probs=9.8

Q ss_pred             HHCCCCEEEEC--CCCCEEEECHHHHHH
Q ss_conf             51680058981--599289852578987
Q gi|255764476|r  200 DSLDFLVWHRD--QAGDILWANISYKKN  225 (792)
Q Consensus       200 da~P~~vw~~D--~dGri~~vN~A~~~~  225 (792)
                      +..|-.+-+..  ||-.=+.||+..++.
T Consensus       312 ~~~PkIlIvTRLiPdA~GT~CnqRLEKv  339 (790)
T TIGR02470       312 EITPKILIVTRLIPDAEGTTCNQRLEKV  339 (790)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCEEECC
T ss_conf             5655289985017689886057245201


No 191
>pfam03281 Mab-21 Mab-21 protein.
Probab=20.63  E-value=42  Score=11.75  Aligned_cols=16  Identities=25%  Similarity=0.557  Sum_probs=6.3

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             95799999999999999
Q gi|255764476|r  418 NLTVQVDLETKYNTLVK  434 (792)
Q Consensus       418 DITE~~~le~~~~~l~~  434 (792)
                      ||.-+| +-.+++.++.
T Consensus       122 ~Lsa~K-ils~Fr~LV~  137 (360)
T pfam03281       122 YLSARK-IRSRFQTLVA  137 (360)
T ss_pred             CEEHHH-HHHHHHHHHH
T ss_conf             030899-9999999999


No 192
>PRK07831 short chain dehydrogenase; Provisional
Probab=20.50  E-value=42  Score=11.74  Aligned_cols=30  Identities=13%  Similarity=0.231  Sum_probs=16.0

Q ss_pred             EECHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             9878999999999988677538886889999
Q gi|255764476|r  681 VADRQRLLQIFSKILSNAMDFSSKGSTVILK  711 (792)
Q Consensus       681 ~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~  711 (792)
                      .++|..+..+..=|+|++-.|. .|..|.|.
T Consensus       228 ~g~pediA~~v~fLaSd~s~~i-TGq~i~V~  257 (261)
T PRK07831        228 AAEPWEVAAVIAFLASDYSSYL-TGEVVSVS  257 (261)
T ss_pred             CCCHHHHHHHHHHHHCHHHCCC-CCEEEEEC
T ss_conf             7599999999999958154697-57388988


No 193
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033    Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=20.39  E-value=42  Score=11.72  Aligned_cols=60  Identities=12%  Similarity=0.236  Sum_probs=31.9

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21189467898999999998539658999986897299983045575489987401068999999999999999999999
Q gi|255764476|r  116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF  195 (792)
Q Consensus       116 ~~wl~p~~a~~l~~ai~~l~~~g~~f~l~~~t~~g~~i~~~Gr~~g~~a~~r~~d~s~~~~~~ael~~~~~~L~~~~~~l  195 (792)
                      ++-|.||+=..+.+++..-.+.|-         || ++=++|.           |.                -.=+...|
T Consensus        60 S~nM~PEyW~eiAe~vk~~~~dG~---------DG-~VI~HGT-----------DT----------------M~YTaaAL  102 (347)
T TIGR00519        60 SENMKPEYWVEIAEAVKKEYDDGY---------DG-VVITHGT-----------DT----------------MAYTAAAL  102 (347)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCC---------CE-EEEECCC-----------CH----------------HHHHHHHH
T ss_conf             567786257999999999851689---------83-9992378-----------83----------------68999999


Q ss_pred             HHHHHHCCCCEEEECCC
Q ss_conf             99985168005898159
Q gi|255764476|r  196 KVLFDSLDFLVWHRDQA  212 (792)
Q Consensus       196 r~llda~P~~vw~~D~d  212 (792)
                      .-||.++|.||.+....
T Consensus       103 SFML~~~~kPvv~tGaQ  119 (347)
T TIGR00519       103 SFMLETLPKPVVFTGAQ  119 (347)
T ss_pred             HHHHHHCCCCEEEECCC
T ss_conf             99997379979998376


No 194
>pfam11359 gpUL132 Glycoprotein UL132. Glycoprotein UL132 is a low-abundance structural component of Human cytomegalovirus (HCMV). The function of this protein is not fully understood.
Probab=20.36  E-value=42  Score=11.72  Aligned_cols=29  Identities=31%  Similarity=0.583  Sum_probs=21.6

Q ss_pred             HHHHHHCCCCEEEECCCCEE--EEECHHHHH
Q ss_conf             99996203432899689848--864058887
Q gi|255764476|r  437 GETIDHLSEGVAVFGPDGRI--KLSNPAFRS  465 (792)
Q Consensus       437 ~~~ld~l~e~vav~~~dgr~--~~~N~a~~~  465 (792)
                      +++.++=++-|..|+.||.+  .++||.|.+
T Consensus       146 re~m~~Dp~NViYF~KdGnLdTSFVNPnYG~  176 (235)
T pfam11359       146 RETMDDDPDNVIYFDKDGNLDTSFVNPNYGH  176 (235)
T ss_pred             HHHCCCCCCCEEEECCCCCCCCCEECCCCCC
T ss_conf             5420379663688815887322001777788


No 195
>PRK01631 hypothetical protein; Provisional
Probab=20.27  E-value=43  Score=11.70  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCE
Q ss_conf             99999999999999999999620343289968984
Q gi|255764476|r  421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR  455 (792)
Q Consensus       421 E~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr  455 (792)
                      ||..+...|   ++..+..+.+..+++-|+|++|.
T Consensus        27 EQ~~LR~eY---L~~fR~~~~~~i~~~kvvD~~Gn   58 (76)
T PRK01631         27 EQQMLRQNY---TQTFRGSLDSILLNTKIVDQNGL   58 (76)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHCCCEEECCCCC
T ss_conf             999999999---99999999988325426899989


Done!