HHsearch alignment for GI: 255764476 and conserved domain: pfam00989
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.85 E-value=1.9e-08 Score=75.69 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHH----HHHHHHHCCCCC-EEEEE-E
Q ss_conf 999998516800589815992898525789873677877566101585-3389678----999986125787-03457-8
Q gi|255764476|r 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI----KKRMISSSALEK-NFCET-V 266 (792)
Q Consensus 194 ~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~----~~~~~~~~~~~~-~~~~~-~ 266 (792)
T Consensus 2 r~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~---G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 78 (112)
T pfam00989 2 DLRAILESLPDGIFVVDEDGRILYVNAAAEELL---GLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVS 78 (112)
T ss_pred HHHHHHHHHHHHEEEECCCCCEEEECCCCCCCC---CCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 799999834246199989999999916533225---86366743752012457534399999999999819976887765
Q ss_pred EEEECCEEEEEEEEEEECC--C---CEEEEEEEH
Q ss_conf 8865690789999976328--9---529998304
Q gi|255764476|r 267 STLEHGNNKSYKIVRVLNS--F---GEAGIAIDV 295 (792)
Q Consensus 267 ~~~~~G~rr~~~v~~~~~~--~---G~~Gia~DI 295 (792)
T Consensus 79 ~~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI 112 (112)
T pfam00989 79 FRVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI 112 (112)
T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf 2879998999999999999199999999999849