HHsearch alignment for GI: 255764476 and conserved domain: pfam08447

>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=96.11  E-value=0.034  Score=32.95  Aligned_cols=75  Identities=11%  Similarity=0.085  Sum_probs=38.6

Q ss_pred             EEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHCCCCCCCEEEEEEEECCEEE--EEEEEEE
Q ss_conf             88640588878289878943898388988777630256114-68899874026544311568999725038--8899997
Q gi|255764476|r  456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIP  532 (792)
Q Consensus       456 ~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~r~~~~~~~~~~dG~~--~~~~~~p  532 (792)
T Consensus         1 v~y~s~~~~~i~G~~~~e~~~~~--~~~~~~ihp--dD~~~~~~~~~~~~~~-~~~~~~~e~R~~~~dG~~~wi~~~~~~   75 (90)
T pfam08447         1 IIYWSPRFEEILGYTPEELKSSY--EDWLDLVHP--EDRERVRRALQEFSLK-KGEPYSGEYRIRRKDGEYRWVEARGRP   75 (90)
T ss_pred             CEEECHHHHHHHCCCCHHCCCCH--HHHHHHCCC--HHHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             99999899998499901107998--899987190--5688999887888860-587404689998159939999999999


Q ss_pred             CCC
Q ss_conf             058
Q gi|255764476|r  533 LPN  535 (792)
Q Consensus       533 l~d  535 (792)
T Consensus        76 ~~d   78 (90)
T pfam08447        76 IRD   78 (90)
T ss_pred             EEC
T ss_conf             999