RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764476|ref|YP_003065238.2| two-component sensor histidine
kinase protein [Candidatus Liberibacter asiaticus str. psy62]
         (792 letters)



>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
           MAD, two-component systems, transferase; HET: ADP; 1.9A
           {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
           3dge_A*
          Length = 258

 Score =  176 bits (448), Expect = 2e-44
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 14/252 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NVT+S   ER        L++ D +K  F+ ++S+ELR+PLT I  + + +  S      
Sbjct: 3   NVTESKELER--------LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDL 54

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S   +++E I   S  L NL+N++LD + ++   +++N   + L DL+     +I     
Sbjct: 55  STLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFAS 114

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF 719
            +N+ +   S+         D  R+ Q+   +L+N + +S K +      +     +G  
Sbjct: 115 SHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGV 174

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V++NG  IP+     +F +F  V ++   +  G GLGL+I +  + LHGG + + S 
Sbjct: 175 LIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE 234

Query: 778 DEGVTTINCRIP 789
               +     IP
Sbjct: 235 VGKGSRFFVWIP 246


>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
           phosphoprotein, transferase, two-component regulatory
           system; 3.80A {Thermotoga maritima}
          Length = 349

 Score =  171 bits (434), Expect = 6e-43
 Identities = 75/352 (21%), Positives = 144/352 (40%), Gaps = 24/352 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++ L   +     DGRI   N     L+  ++  +  G  ++++             ++ 
Sbjct: 14  LESLETAIITLSKDGRITEWNKKAEQLFGLKKENVL-GRRLKDLPD-----------FEE 61

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEK 558
             ++  S  + ++ +        +        P  NA+T  L  V +T     E    E+
Sbjct: 62  IGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEE 121

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
               R+   I       V++E+R+P+T I GF   +K            +Y+  I+   +
Sbjct: 122 ERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDP--ETLKKYINIITNELS 179

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  +V +IL+ +        L ++   LN+L+ EV      K+ + NI     +D +  
Sbjct: 180 RLETIVKEILEYSKER---QVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL 236

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              ADR R+ Q+   ++ NA++ + +   + + +         SV N+G  IPE++ + +
Sbjct: 237 RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKI 296

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789
           F+ F       + +G GLGLSI    I + HGG +   + + G       IP
Sbjct: 297 FSPFF----TTKTQGTGLGLSICRKIIEDEHGGKIWTENRENG-VVFIFEIP 343



 Score = 31.5 bits (71), Expect = 0.72
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL-----ATNPSNDELLEFLRSA--N 363
           IL +L  AI    ++  +   N+   +L+ +    +        P  +E+     S   N
Sbjct: 13  ILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFEN 72

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
           K P  LN+  + E  F++  S   +  T  L
Sbjct: 73  KEPVFLNFYKFGERYFNIRFSPFRNAKTQLL 103


>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
           cell inner MEM cell membrane, kinase, membrane,
           nucleotide-binding; 2.50A {Escherichia coli}
          Length = 222

 Score =  158 bits (401), Expect = 5e-39
 Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 7/213 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F    ++ELRSPLT +   T++ + S        + + +  + +       LV+ +L L+
Sbjct: 5   FTSDAAHELRSPLTALKVQTEVAQLSDD--DPQARKKALLQLHSGIDRATRLVDQLLTLS 62

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +D+     + + I L DLL      I     +  I +++  +            L  + 
Sbjct: 63  RLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLV 122

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             +L NA+ +S +GS V +    DN    F V++NG  +  +    +  RF         
Sbjct: 123 RNLLDNAVRYSPQGSVVDVTLNADN----FIVRDNGPGVTPEALARIGERFYR-PPGQTA 177

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G GLGLSIV+    LHG +V   ++++G    
Sbjct: 178 TGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEA 210


>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
           two-component histidine kinase, phosphoprotein; HET:
           ADP; 2.03A {Geobacillus stearothermophilus}
          Length = 244

 Score =  148 bits (376), Expect = 4e-36
 Identities = 45/234 (19%), Positives = 92/234 (39%), Gaps = 18/234 (7%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            EK EA+             +S+E+R+PLT   GF  L++   L +   K+ QY      
Sbjct: 8   AEKMEAVTH-------LAASISHEIRNPLTAARGFIQLIEEQPLAA--DKRRQYARIAIE 58

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
                  ++ D L  A       +     + +   +  V   +    + + + I+     
Sbjct: 59  ELDRAEAIITDYLTFAKPAPETPEK----LNVKLEIERVIDILRPLANMSCVDIQA--TL 112

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
              S + +R++  Q    ++ NA++    G T+ +  + DNG  +  + + G  + ++  
Sbjct: 113 APFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQL 172

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +   + +        G GLG+ +V   I    G + I S     TT++  +P
Sbjct: 173 ERLGEPYFTTKGVK---GTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLP 223


>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
           transferase, mitochondrial protein kinase, potassium;
           HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
           d.122.1.4 PDB: 1gjv_A 1gkx_A*
          Length = 388

 Score =  134 bits (338), Expect = 7e-32
 Identities = 31/280 (11%), Positives = 78/280 (27%), Gaps = 39/280 (13%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++     +     + ++ +  +         V+ +  + +  +T +       +  K   
Sbjct: 99  YIRAFQKLTDFPPIKDQADEAQYCQ-----LVRQLLDDHKDVVTLLAEGLRESR--KHIE 151

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  +++    S   +  L    L L       + +  + +    ++ +        
Sbjct: 152 DEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARRL 211

Query: 662 MHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--------TVILK 711
                     +  +      F      L  I  ++L NAM  + +           V++ 
Sbjct: 212 CEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVIT 271

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------------------- 752
            A ++ D I  + + G  I       V +   + A    +                    
Sbjct: 272 IANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSG 331

Query: 753 ---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              G G GL    ++    GG + + S     T +  R+ 
Sbjct: 332 PMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 371


>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase;
           HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB:
           3cgz_A 3cgy_A
          Length = 152

 Score =  107 bits (270), Expect = 7e-24
 Identities = 23/146 (15%), Positives = 57/146 (39%), Gaps = 5/146 (3%)

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  LL+ +  ++        + I +    ++ SFV ++   +++   +L NA  +  +  
Sbjct: 6   VAPLLDNLTSALNKVYQRKGVNISLDISPEI-SFVGEQNDFVEVMGNVLDNACKYCLEFV 64

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            +  +  + +      V+++G  IP    + +F+R         R G G+GL++      
Sbjct: 65  EISAR--QTDEHLYIVVEDDGPGIPLSKREVIFDRGQR--VDTLRPGQGVGLAVAREITE 120

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            + G +    S  G   +      + 
Sbjct: 121 QYEGKIVAGESMLGGARMEVIFGRQH 146


>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural
           genomics, mycobacterium tuberculosis structural
           proteomics project; 1.78A {Mycobacterium tuberculosis}
           SCOP: d.122.1.3 PDB: 1ys3_A
          Length = 150

 Score =  102 bits (256), Expect = 3e-22
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 5/143 (3%)

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + DLL+      A    + ++ +           V     L       ++NA+       
Sbjct: 10  ITDLLDRAAHDAARIYPDLDVSLVP---SPTCIIVGLPAGLRLAVDNAIANAVKHGGAT- 65

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            V L A         ++ +NGS +PE   + VF RF S        G GLGL++V     
Sbjct: 66  LVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERF-SRGSTASHSGSGLGLALVAQQAQ 124

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           LHGG  S+ +S  G   +  R+P
Sbjct: 125 LHGGTASLENSPLGGARLVLRLP 147


>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
           structural genomics, NPPSFA; HET: ANP; 1.86A {Homo
           sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
          Length = 394

 Score =  102 bits (254), Expect = 4e-22
 Identities = 31/273 (11%), Positives = 82/273 (30%), Gaps = 32/273 (11%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQS 607
           +++   L E +E      +  + FV  +          +      +++     +++   +
Sbjct: 76  IQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTN 135

Query: 608 QYVEY-----------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           Q ++Y                   + + +D         G +  N   + +     E  +
Sbjct: 136 QNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSR 195

Query: 657 SIATKMHENNIRIKVI-----SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------ 705
            +  + + ++  +K+         +    V     L  +  ++  NAM  + +       
Sbjct: 196 MLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQPS 255

Query: 706 -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--------GVGL 756
            + + +       D    + + G  +P  +   +F+   S A              G G 
Sbjct: 256 LTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGY 315

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL I   +     G +++ S     T     + 
Sbjct: 316 GLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLK 348


>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase,
           two-component regulatory system; 1.57A {Thermotoga
           maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
          Length = 152

 Score = 98.5 bits (245), Expect = 6e-21
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           + ++   LN+L+ EV      K+ + NI     +D +     ADR R+ Q+   ++ NA+
Sbjct: 1   MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAI 60

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           + + +   + + +         SV N+G  IPE++ + +F+ F +     + +G GLGLS
Sbjct: 61  EATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTT----KTQGTGLGLS 116

Query: 760 IVESFI-NLHGGHVSISSSDEGVTTINCRIP 789
           I    I + HGG +   + + G       IP
Sbjct: 117 ICRKIIEDEHGGKIWTENRENG-VVFIFEIP 146


>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ));
           histidine kinase, osmosensor, His-Asp phosphorelay
           system, signal transduction; HET: ANP; NMR {Escherichia
           coli} SCOP: d.122.1.3
          Length = 161

 Score = 98.0 bits (244), Expect = 7e-21
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 6/151 (3%)

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           ++      LN +L EV  + +         I+                + +  + ++ NA
Sbjct: 4   EMPMEMADLNAVLGEVIAAESGY----EREIETALYPGSIEVKMHPLSIKRAVANMVVNA 59

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
             +      + + +  +     F V+++G  I  +  K +F  FV         G GLGL
Sbjct: 60  ARYG--NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGL 117

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +IV+  ++ H G + + +S+ G  +I   +P
Sbjct: 118 AIVQRIVDNHNGMLELGTSERGGLSIRAWLP 148


>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate
           dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA
           ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
           1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
          Length = 419

 Score = 97.1 bits (241), Expect = 1e-20
 Identities = 36/275 (13%), Positives = 73/275 (26%), Gaps = 34/275 (12%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII----GFTDLLKTSKLGSLNS 604
           +++   L E      +  ++ ++F+Q +          +     G  +  +        S
Sbjct: 98  MQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFIS 157

Query: 605 KQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI---------VLNDLLNEV 654
              Q +++    +      L+N    L   D   +   +            V+ D     
Sbjct: 158 TNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETA 217

Query: 655 KQSIATKMHE----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---- 706
           K                     +  K    V     L  +  ++  N+M  + +      
Sbjct: 218 KMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRK 277

Query: 707 ----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--------GV 754
                V         D    + + G  +P      +FN   S A R            G 
Sbjct: 278 EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGF 337

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GL I   +     G + + S +   T     + 
Sbjct: 338 GYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLK 372


>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL
           ATPase/kinase family, pyruvate dehydrogenase complex,
           mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
           PDB: 2q8f_A* 2q8h_A
          Length = 407

 Score = 93.6 bits (232), Expect = 1e-19
 Identities = 37/277 (13%), Positives = 82/277 (29%), Gaps = 37/277 (13%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII----GFTDLLKTSKLGSLNS 604
           +++ + L +  +   +  +    F   V          I     G  +  ++  +  + S
Sbjct: 86  IQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTS 145

Query: 605 KQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-----------VLNDLLN 652
           +    +++    S   +  L+N    L          +   I           V+ D   
Sbjct: 146 QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIKDGYE 205

Query: 653 EVKQSIATKMHENNIRIK-----VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS- 706
             ++ +    + N+  ++       S G+    V     L  +  ++  NAM  + +   
Sbjct: 206 NARR-LCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHA 264

Query: 707 ------TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--------VSNAHRGQRR 752
                  + +     N D    + + G  +P      +FN          V  +      
Sbjct: 265 NRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLA 324

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G G GL I   +     G + + S +   T     I 
Sbjct: 325 GFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIK 361


>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
           transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
           2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
          Length = 394

 Score = 89.0 bits (220), Expect = 3e-18
 Identities = 32/274 (11%), Positives = 80/274 (29%), Gaps = 34/274 (12%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNS 604
           V++   + E  +   +     + F   +          +        +   T     +++
Sbjct: 76  VQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN 135

Query: 605 KQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI---------VLNDLLNEV 654
           +    +++    S   +  L+N    +           +            V+ D  +  
Sbjct: 136 QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHIGSIDPNCNVSEVVKDAYDMA 195

Query: 655 KQSIATKMHENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---- 705
           K  +  K +  +  +++      +  +    V     L  +  ++  NAM  + +     
Sbjct: 196 KL-LCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254

Query: 706 ---STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-------GVG 755
                + +  A    D    + + G  +P    + +F+   S A   Q         G G
Sbjct: 255 LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GL I   +     G + + S +   T     + 
Sbjct: 315 YGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLK 348


>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two
           component system, transferase; 1.60A {Escherichia coli
           K12} SCOP: d.122.1.3
          Length = 160

 Score = 85.5 bits (211), Expect = 4e-17
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 17/157 (10%)

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ +   V   ++ ++  +N+R+    D  L     D  ++ Q+   I+ NA+       
Sbjct: 10  IHKVAERVVTLVSMEL-PDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEG 68

Query: 707 TVIL-----------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
             I+              R        V++NG  IP  +  ++F   VS     +  G G
Sbjct: 69  GEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSG----REGGTG 124

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGLSI  + I+ H G +  +S     T  +  +P ++
Sbjct: 125 LGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIRK 160


>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein,
           transferase; HET: ACP ADP; 1.60A {Thermotoga maritima}
           SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A*
           1i5d_A*
          Length = 189

 Score = 59.6 bits (143), Expect = 2e-09
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 38/181 (20%)

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           ++ + N   + +     + N  +  I  G          + + +    +L NA+D   + 
Sbjct: 7   ISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEP 66

Query: 706 S------------TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--------- 744
                        T+IL A  +  + +  V+++G  I ++                    
Sbjct: 67  KEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 126

Query: 745 ----------------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                                +  G G+G+ +V++ +    G +SI S  +  T +  R+
Sbjct: 127 SDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRL 186

Query: 789 P 789
           P
Sbjct: 187 P 187


>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
           two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
           a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
           1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
          Length = 471

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFI-FSVKNNGSSIPED 733
           F    + L Q   +++ N++D +          + +    D       +V +NG  IP  
Sbjct: 26  FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 85

Query: 734 MCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLH-GGHVSISSSDEGVTTI 784
              + F R    S     Q RG  GLG+     +  +H    + I +S      I
Sbjct: 86  EVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRI 140


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 54/334 (16%), Positives = 95/334 (28%), Gaps = 133/334 (39%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKN------SF 572
           LS   LE+ +  +P A     F   +  ++ +  + L E  E     DE          F
Sbjct: 11  LSHGSLEHVL-LVPTAS----FFIAS-QLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + +VS  +    + +  F  +L       L   ++ Y          L    NDI  LA 
Sbjct: 65  LGYVSSLVEP--SKVGQFDQVLNLC----LTEFENCY----------LEG--NDIHALAA 106

Query: 633 -----VDAGIMKLN------YSTIVLNDLLNEVKQSIATKMH---------ENNIRIKVI 672
                 D  ++K         +  ++       K+    K           E N ++  I
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIM------AKRPF-DKKSNSALFRAVGEGNAQLVAI 159

Query: 673 SDGKLG-----------------SFVAD----RQRLLQIFSKILSNAMDFSSKGSTVI-- 709
             G+ G                   V D        L    +   +A    ++G  ++  
Sbjct: 160 FGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218

Query: 710 LK--AARDNGDFIFSVKNNGSSIPEDM--------------CKSVFNRFVSNAHRGQRRG 753
           L+  +   + D++        SIP                  K      +     G+ R 
Sbjct: 219 LENPSNTPDKDYL-------LSIPISCPLIGVIQLAHYVVTAK------LLGFTPGELRS 265

Query: 754 VGLGLSIVESFINLHG--GH-------VSISSSD 778
                        L G  GH       V+I+ +D
Sbjct: 266 ------------YLKGATGHSQGLVTAVAIAETD 287



 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 109/656 (16%), Positives = 177/656 (26%), Gaps = 284/656 (43%)

Query: 60  SFLSEICDQL-----SKYHSLLT------ENNCLTIVWDGKDETPEI---IGQLHQRIDI 105
            FL  +   +      ++  +L       EN  L    +G D    I     +L      
Sbjct: 63  KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL----EGND----IHALAAKLL----- 109

Query: 106 PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS--FDLVAETQNDCAIKI------EG 157
            + DT L+  +  +K ++      A     K+  S  F  V E       ++      +G
Sbjct: 110 QENDTTLVKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGN----AQLVAIFGGQG 164

Query: 158 RVSGSCAF--LRILSLDGIYSELAETTLKC-----KKLS-NHISVFKVLFDSLDFLVW-- 207
                  F  LR   L   Y  L    +K       +L    +   KV    L+ L W  
Sbjct: 165 NTDD-Y-FEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220

Query: 208 HRDQAGD---ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE 264
           +     D   +L   IS               IG                          
Sbjct: 221 NPSNTPDKDYLLSIPISCP------------LIG-------------------------- 242

Query: 265 TVSTLEHGNNKSYKIV-RVLN-SFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVA 318
            V  L H     Y +  ++L  + GE            +   L     H+  ++     A
Sbjct: 243 -VIQLAH-----YVVTAKLLGFTPGE------------LRSYLKGATGHSQGLV----TA 280

Query: 319 IAI--------FDQNRYLQFHNRSFVEL-----WEIDLAFLATN--PS-------NDE-- 354
           +AI        F  +       R  + +          A+  T+  PS       N+E  
Sbjct: 281 VAIAETDSWESFFVS------VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334

Query: 355 ---LLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSNP 408
              +L    S + L  EQ+                + + +    HLP G+ + + + +  
Sbjct: 335 PSPML----SISNLTQEQV----------------QDYVNKTNSHLPAGKQVEISLVNGA 374

Query: 409 RGGTIWMFENLTVQVDLETKYN---TLVKVQGETIDHLSEGVAVFGPD-GRIKLSN--PA 462
           +        NL V    ++ Y    TL K +  +           G D  RI  S     
Sbjct: 375 K--------NLVVSGPPQSLYGLNLTLRKAKAPS-----------GLDQSRIPFSERKLK 415

Query: 463 FRSLWKTEENRLSPGT---HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           F        NR  P     H        S                         L    +
Sbjct: 416 F-------SNRFLPVASPFH--------SHL-----------------------LVPASD 437

Query: 520 LLSDSVLEYSI--------IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE---- 567
           L++  +++ ++        IP            V D        T     LR        
Sbjct: 438 LINKDLVKNNVSFNAKDIQIP------------VYD--------TFDGSDLRVLSGSISE 477

Query: 568 --IKNSFVQHVSYE--LRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASS 617
             +       V +E   +   T+I+ F      S LG L    K    V  I A +
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDF-GPGGASGLGVLTHRNKDGTGVRVIVAGT 532



 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 70/318 (22%), Positives = 118/318 (37%), Gaps = 104/318 (32%)

Query: 381  VYKSSETHKDTW-----HLPN--GQTLHVIVTSNPRGGTIWMFENLTVQVDLET------ 427
            +YK+S+  +D W     H  +  G ++  IV +NP         NLT+    E       
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP--------VNLTIHFGGEKGKRIRE 1686

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
             Y+ ++    ETI            DG++K +   F+ +               N  +T 
Sbjct: 1687 NYSAMIF---ETI-----------VDGKLK-TEKIFKEI---------------NEHSTS 1716

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE----YSIIPLPNAQTMLTFV 543
              + +E     L +A  T F       Q  L L+  +  E      +IP           
Sbjct: 1717 YTFRSEK---GLLSA--TQFT------QPALTLMEKAAFEDLKSKGLIP----------- 1754

Query: 544  NVTDSVRAERALTEKNEALRKADEIK-NSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-- 600
               D+  A  +L E       AD +   S V+ V Y  R     +    D L  S  G  
Sbjct: 1755 --ADATFAGHSLGEYAALASLADVMSIESLVEVVFY--RGMTMQVAVPRDELGRSNYGMI 1810

Query: 601  ---------SLNSKQSQY-VEYISASSTILLNLVN-DILDLATVDAGIMK-LNYSTIVLN 648
                     S + +  QY VE +   +  L+ +VN ++ +   V AG ++ L+  T VLN
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870

Query: 649  -------DLLNEVKQSIA 659
                   D++ E+++S++
Sbjct: 1871 FIKLQKIDII-ELQKSLS 1887



 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 62/286 (21%), Positives = 92/286 (32%), Gaps = 113/286 (39%)

Query: 12  KGIEICTLFSCKIAV-----FGTIAGMLLTTIIPIIL--------------L-IR--QRN 49
           K I +  LF   I V     +        T++ P IL              L I    + 
Sbjct: 298 KAITV--LFF--IGVRCYEAYPN------TSLPPSILEDSLENNEGVPSPMLSISNLTQE 347

Query: 50  SLAKKVNETYSFLSEICDQLSKYH---SLLTENNCLTIVWDGKDETPE-IIG-QLHQR-- 102
            +   VN+T S L     +        SL+  N    +V  G    P+ + G  L  R  
Sbjct: 348 QVQDYVNKTNSHLPA--GK----QVEISLV--NGAKNLVVSG---PPQSLYGLNLTLRKA 396

Query: 103 -----ID---IPQTDTDLLSFEN-WLK----FH-HYIKLSKATEKLRKEGQSFDLVAET- 147
                +D   IP ++  L  F N +L     FH H   L  A++ + K     DLV    
Sbjct: 397 KAPSGLDQSRIPFSERKL-KFSNRFLPVASPFHSHL--LVPASDLINK-----DLVKNNV 448

Query: 148 ---QNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAE--TTLKC--KKLSN----HISVF 195
                D  I +     GS   LR   L G I   + +    L    +  +     HI   
Sbjct: 449 SFNAKDIQIPVYDTFDGSD--LR--VLSGSISERIVDCIIRLPVKWETTTQFKATHI--- 501

Query: 196 KVLFDSLDF----------LVWHRDQAGD----ILWANISYKKNTE 227
                 LDF          L  HR++ G     I+   +    + +
Sbjct: 502 ------LDFGPGGASGLGVLT-HRNKDGTGVRVIVAGTLDINPDDD 540



 Score = 28.8 bits (64), Expect = 5.1
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 22/109 (20%)

Query: 34   LLTTII--PIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91
            +L  +I  P+ L I       K++ E YS             +++ E    TIV DGK +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYS-------------AMIFE----TIV-DGKLK 1702

Query: 92   TPEIIGQL--HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG 138
            T +I  ++  H      +++  LLS   + +    +    A E L+ +G
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751


>1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction,
           osmolarity sensor protein, inner membrane,
           phosphorylation, transferase; NMR {Escherichia coli}
           SCOP: a.30.2.1
          Length = 67

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             +++  + +   +  VS++LR+PLT I   T+++          +     E I+     
Sbjct: 3   AGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMS--------EQDGYLAESINKDIEE 54

Query: 620 LLNLVNDILDLA 631
              ++   +D  
Sbjct: 55  CNAIIEQFIDYL 66


>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain,
           mycobacteium tuberculos molecule binding domain; 2.30A
           {Mycobacterium tuberculosis}
          Length = 185

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 8/130 (6%)

Query: 440 IDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +H+   +    GPD R    N A+R      +    P   +        +   E     
Sbjct: 43  FEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAREVYPELE--GQQIYEMLDRV 100

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAER 553
                  S  + R         + +   ++ + P   A        L   +VT  VRA +
Sbjct: 101 YQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQ 160

Query: 554 ALTEKNEALR 563
           A   + E L 
Sbjct: 161 AAEARVEELS 170


>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain,
           transferase; HET: MSE ADP; 2.10A {Bacillus subtilis}
           PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
          Length = 218

 Score = 47.8 bits (112), Expect = 9e-06
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 32/240 (13%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L + NE + +  +++    Q ++ +L   L   +        S +G  +    + 
Sbjct: 7   RLEEKLEDANERIAELVKLEER--QRMARDLVDTLGQKL--------SLMGLKSDLARKL 56

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +      +   L  V      +  +   +  +   I L D L  +KQ +           
Sbjct: 57  IYKDPEQAARELKSVQQTARTSLNEVRKIVSSMKGIRLKDELINIKQILEAADIMFIYEE 116

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +   +      + +   L     + ++N +                              
Sbjct: 117 EKWPEN---ISLLNENILSMCLKEAVTNVVKH-----------------SQAKTCRVDIQ 156

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                     +   +          G GL  +   +    G + I +  E  T +   IP
Sbjct: 157 QLWKEVVITVSDDGTFKGEENSFSKGHGLLGMRERLEFANGSLHIDT--ENGTKLTMAIP 214


>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal
           transduction, multi- domains protein; 2.60A {Thermotoga
           maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A*
          Length = 379

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 32/252 (12%), Positives = 83/252 (32%), Gaps = 49/252 (19%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           V  E    L +++G    L  ++   L + +   ++ +  S + L  +  D+ ++     
Sbjct: 6   VDIEKLDNLMDLMG---ELVIARSRILETLKKYNIKELDESLSHLSRITLDLQNVV---- 58

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694
               +    + ++ + N   + +     + N  +   +            + + +    +
Sbjct: 59  ----MKIRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHL 114

Query: 695 LSNAMDFSSKGSTV------------ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           L NA+D   +                IL A  +  + +  V+++G  I ++         
Sbjct: 115 LRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEK 174

Query: 742 ------------------------FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                                   F +     +  G G+G+ +V++ +    G + I S 
Sbjct: 175 GLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESE 234

Query: 778 DEGVTTINCRIP 789
            +  T +  R+P
Sbjct: 235 KDKGTKVTIRLP 246


>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction,
           fatty-acid binding, sigma regulator, signaling protein;
           HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
          Length = 158

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 8/130 (6%)

Query: 440 IDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +H+   +    GPD R    N A+R      +                 +   E     
Sbjct: 23  FEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLD--TVGQPAREVYPELEGQQIYEMLDRV 80

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAER 553
                  S  + R         + +   ++ + P   A        L   +VT  VRA +
Sbjct: 81  YQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQ 140

Query: 554 ALTEKNEALR 563
           A   + E L 
Sbjct: 141 AAEARVEELS 150


>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor
           antagonist, phosphatase serine kinase, ATPase, unknown
           function; 2.60A {Mycobacterium tuberculosis}
          Length = 399

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 24/117 (20%)

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSK----GSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +G+  +D   ++   S+ + NA++           V+  A   +G+   SV + G     
Sbjct: 288 IGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDH 347

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                           G R   G GL++ E+          I     G TT      
Sbjct: 348 R--------------DGARGR-GRGLAMAEAL----VSEARIMHGAGG-TTATLTHR 384


>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
           decatenation, ATPase, drug design, DNA-binding,
           magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
           shibatae}
          Length = 530

 Score = 41.7 bits (96), Expect = 6e-04
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFI-FSVKNNGSS 729
           +L  F    + L Q   +++ N++D +          + +    D       +V +NG  
Sbjct: 21  ELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIG 80

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGV-GLGLSIVESFINLHGG-HVSISSSDEGVTTI 784
           IP     + F R    S     Q RG+ GLG+     +  +H    + I +S      I
Sbjct: 81  IPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRI 139


>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma,
           sporulation, serine kinase, transcription; HET: ADP;
           2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3
           PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
          Length = 145

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 13/138 (9%)

Query: 652 NEVKQSI-ATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDF---SSKGS 706
           NE+     A   +E+  R+ V +   +L   + +   +  + S+ ++NA+     +    
Sbjct: 3   NEMHLQFSARSENESFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHGYNNDPNG 62

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            V +    ++G    +V++ G  IP    +       +     +    G+G +I+E+   
Sbjct: 63  IVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPELE--RSGMGFTIMEN--- 115

Query: 767 LHGGHVSISSSDEGVTTI 784
                V + S     TT+
Sbjct: 116 -FMDEVIVESEVNKGTTV 132


>1ixm_A SPO0B, protein (sporulation response regulatory protein);
           phosphotransferase, two component system; 2.60A
           {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
          Length = 192

 Score = 38.2 bits (87), Expect = 0.007
 Identities = 23/225 (10%), Positives = 60/225 (26%), Gaps = 46/225 (20%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+ +     + T     L          + H  ++  + L  I G   L K  ++  + 
Sbjct: 3   DVSKNQEENISDTALTNELIH-------LLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMI 55

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +     +                             + S +      +     +     
Sbjct: 56  EEMVIDAK-----------------------------HESKLSNLKTPHLAFDFLTFNWK 86

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719
            + + ++    G++    A  Q+L ++  K+        S+      TV L+    +   
Sbjct: 87  THYMTLEYEVLGEIKDLSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQL 146

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGL 758
           I  +  +G+         +          +          + +GL
Sbjct: 147 ILYLDFHGAFADPSAFDDIRQNGYEDVDIMRFEITSHECLIEIGL 191


>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET:
           ATP; 1.74A {Bacillus subtilis}
          Length = 128

 Score = 37.0 bits (85), Expect = 0.016
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 24/146 (16%)

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL-QIFSKILSNAMDFSS 703
           I L D L  +KQ     +   +I      +    +     + +L     + ++N +  S 
Sbjct: 2   IRLKDELINIKQI----LEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHS- 56

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +  T  +   +   + + +V ++                 +          G GL  +  
Sbjct: 57  QAKTCRVDIQQLWKEVVITVSDD----------------GTFKGEENSFSKGHGLLGMRE 100

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +    G + I +  E  T +   IP
Sbjct: 101 RLEFANGSLHIDT--ENGTKLTMAIP 124


>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A
           {Escherichia coli K12} SCOP: d.110.3.2 PDB: 1v9z_A*
           1vb6_A* 1s67_L* 1s66_L*
          Length = 167

 Score = 36.8 bits (84), Expect = 0.019
 Identities = 13/124 (10%), Positives = 35/124 (28%), Gaps = 8/124 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            ++    G  +   +  +   NPA   L  +K EE   +    +       +        
Sbjct: 45  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHN 104

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFVNVTDSVRAER 553
            +   A +     E   LQ   +  S     +++  +     +       + +  +  + 
Sbjct: 105 REGGKARVEGMSRE---LQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASVEMAQKE 161

Query: 554 ALTE 557
              +
Sbjct: 162 QTRQ 165


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 35.7 bits (81), Expect = 0.040
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 11/35 (31%)

Query: 510 ER---KSLQGTLELLS-DSVLEYSIIP-LPNAQTM 539
           E+   K LQ +L+L + DS       P L    TM
Sbjct: 18  EKQALKKLQASLKLYADDSA------PALAIKATM 46



 Score = 32.3 bits (72), Expect = 0.46
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 16/45 (35%)

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALE-KNFCETVSTLE 270
           E + +   K +  S KL+ ++      S+ AL  K      +T+E
Sbjct: 18  EKQAL---KKLQASLKLYADD------SAPALAIK------ATME 47


>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure
           initiativ midwest center for structural genomics; 2.78A
           {Vibrio cholerae o1 biovar el tor}
          Length = 152

 Score = 35.4 bits (81), Expect = 0.050
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 13/126 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD---- 495
           +D LS  + +   D  I   N  F S    +   +  G +I  +    + Y         
Sbjct: 28  LDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETM-QGKNILELFPESADYLKRKIDTAL 86

Query: 496 ---GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTD 547
                   +          KS +              +IP+ +         L   +VT 
Sbjct: 87  VIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTI 146

Query: 548 SVRAER 553
               ++
Sbjct: 147 QASQQQ 152



 Score = 28.5 bits (63), Expect = 5.8
 Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 19/114 (16%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--------------ELL 356
           +L  L+ A+ I   +  +   N  F      D   +      +                L
Sbjct: 27  LLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTAL 86

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-----PNGQTLHVIVT 405
               S+    EQ       ++   V    E       +      +G   HV + 
Sbjct: 87  VIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLC 140


>3mr0_A Sensory box histidine kinase/response regulator; PAS fold,
           structural genomics, PSI-2; HET: PG5; 1.49A
           {Burkholderia thailandensis}
          Length = 142

 Score = 35.3 bits (81), Expect = 0.054
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +   S G+  + P       +P F+ +  ++  E       H  +I          +   
Sbjct: 15  VSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKA 74

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAE 552
            L        +   ++  G         ++     L N+       +   ++VTD  R E
Sbjct: 75  HLEHRDTYDVEYRVRTRSGDFR-----WIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDE 129

Query: 553 RALTEKNEALRK 564
            AL    E LR+
Sbjct: 130 DALRVSREELRR 141


>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics,
           PSI-2, protein structure initiative, midwest center for
           structural genomics; HET: 3PB; 1.80A {Rhodococcus SP}
          Length = 118

 Score = 35.1 bits (80), Expect = 0.055
 Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 12/109 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
                 G      D RI   N       +   + L      R +                
Sbjct: 18  YFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDEL----LGRVVTEVLPETQGSYFDALC 73

Query: 500 FAAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVT 546
              + T      +  Q  ++ L      +E +         ++ F +VT
Sbjct: 74  RKVLAT-----GREQQTRVDSLYSPGMTIEVTAAADSG-ALVVHFRDVT 116


>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
           4.00A {Methanosarcina mazei}
          Length = 621

 Score = 35.2 bits (80), Expect = 0.056
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 687 LLQIFSKILSNAMDFSSKG---STVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
           L+    + + NA+D   +      ++++  R   D++   +++NG  I  +    VF + 
Sbjct: 38  LITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKL 97

Query: 743 VS----NAHRGQRRGVGLGLSIVESFINLHGG-HVSISSSDEGVTTI 784
           +     +A +  R   G+G+S    +  +  G H  I S        
Sbjct: 98  LYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPA 144


>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase,
           phosphoprotein, transferase, flavoprotein; HET: FAD;
           2.34A {Methylococcus capsulatus}
          Length = 227

 Score = 35.3 bits (79), Expect = 0.058
 Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 15/224 (6%)

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL----EFLRSANKLPEQLNWKTW 374
           ++I D    + + N +F  +              +EL+      + S     +      W
Sbjct: 2   VSITDLQGRILYANDNFCAVSRY---------GREELVGQDHRIVNSG-YHGKAYIRDMW 51

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           +          E                IV      G    + ++   +  + +    + 
Sbjct: 52  RTISRGNIWQGEFCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLA 111

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
              + +D  SE + +    GRI  +NPA        E  L   +     +    +    +
Sbjct: 112 RLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAA 171

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQ 537
               L A    S     +   G     ++    E S  P+    
Sbjct: 172 MQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDG 215


>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM,
           PAS, flavoprotein, signaling protein; HET: FMN; 1.45A
           {Bacillus subtilis} PDB: 2pr6_A*
          Length = 132

 Score = 34.3 bits (77), Expect = 0.099
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 5/127 (3%)

Query: 440 IDHLSEGVAV---FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           +DH+  GV +      D  I   N  F  +   E   +                  ++  
Sbjct: 5   LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIR 64

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             L      +   +     GT+    + +    +        +    ++T     E+ L 
Sbjct: 65  TALQNKEPVTVQIQNYKKDGTMF--WNELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLE 122

Query: 557 EKNEALR 563
           +    + 
Sbjct: 123 DSLTEIT 129


>3cax_A Uncharacterized protein PF0695; structural genomics, unknown
           function, PSI-2, protein structure initiative; 2.43A
           {Pyrococcus furiosus dsm 3638}
          Length = 369

 Score = 34.5 bits (78), Expect = 0.10
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 20/147 (13%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            +DL T Y  + +++    + L   V     D R++  +P  R   +T       G  ++
Sbjct: 228 DIDLGTGYLNIEELK-AIFEALPVDVTFIDKDDRVRFFSPGERIFTRTPSV---LGRPVQ 283

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---- 537
                 S          +   I+ +F + RK        L +  +    +PL N +    
Sbjct: 284 LCHPPKSV--------YVVNKILKAFKEGRKKEATFWLRLREKYVYIKYVPLFNEKGEYI 335

Query: 538 -TMLTFVNVTDSVRAE---RALTEKNE 560
            T+   +++    + E   R L  ++E
Sbjct: 336 GTLEMTMDIAPYKKIEGEKRLLDWRDE 362


>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase,
           phosphoprotein, nitrogen fixation, PER-ARNT-SIM,
           metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium
           japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A*
           1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A*
           1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
          Length = 119

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 4/118 (3%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + + + V    G I+L + A   L+   E           +     R  ++S        
Sbjct: 2   IPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILM-PEPDRSRHDSYISRYRTT 60

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFVNVTDSVRAERALTE 557
                    + + G     +   +  SI  + +           ++T+  + +  L E
Sbjct: 61  SDPHIIGIGRIVTGKRRDGTTFPMHLSIGEMQSGGEPYFTGFVRDLTEHQQTQARLQE 118


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 33.0 bits (74), Expect = 0.26
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 32/100 (32%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL------KTSK-LGSL 602
           +A+R LT++ E++RK  E           E R  L  +   + ++      K  K L   
Sbjct: 76  QADR-LTQEPESIRKWRE-----------EQRKRLQELDAASKVMEQEWREKAKKDLEEW 123

Query: 603 NSKQSQYVEYISASSTILLNLVND-ILDLA---TVDAGIM 638
           N +QS+ VE          N +N+ I D A     DA I+
Sbjct: 124 NQRQSEQVEK---------NKINNRIADKAFYQQPDADII 154



 Score = 28.4 bits (62), Expect = 6.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 239 ESRKLFKEEIKKRM----ISSSALEKNFCETVST-LEHGNNK 275
           ES + ++EE +KR+     +S  +E+ + E     LE  N +
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126


>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural
           genomics, PSI-2, protein structure initiative; 2.40A
           {Shewanella oneidensis}
          Length = 129

 Score = 32.2 bits (73), Expect = 0.46
 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 6/108 (5%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNE---SD 495
           I HL+E + +   +G I+  N      L   + +    G   RN      +   +   S 
Sbjct: 13  IQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLK--GQDWRNFLTEHHQARYDNLLSH 70

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
              L            +             +E SI  +P  + M   V
Sbjct: 71  DVQLGTNCGQPVQHPAQETTLICASGKAKDVELSISYIPGHEPMFVMV 118


>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2,
           protein structure initiative, northeast structural
           genomics consortium; 2.00A {Colwellia psychrerythraea}
          Length = 124

 Score = 32.2 bits (73), Expect = 0.48
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           ++K + +  D++ + + V    G I   N    +L+
Sbjct: 5   ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLY 40



 Score = 30.3 bits (68), Expect = 1.5
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 9/106 (8%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           D L    +    +  AI + D   ++   N+    L+           S ++ +    + 
Sbjct: 4   DILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGY---------SKEQAIGQPVNM 54

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             +P      T +       +   T +      +G    +     P
Sbjct: 55  LHVPGDTEHITSEVISAVENQGKWTGEIRMLHKDGHIGWIESMCVP 100


>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding,
           serine/threonine-protein kinase, light-induced signal
           transduction, phototropin1; HET: FMN; 1.40A {Avena
           sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
          Length = 146

 Score = 31.2 bits (69), Expect = 0.87
 Identities = 13/133 (9%), Positives = 33/133 (24%), Gaps = 3/133 (2%)

Query: 439 TIDHLSEGVAV---FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           T++ + +   +     PD  I  ++ +F  L +     +              R      
Sbjct: 7   TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 66

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              +      +      +  G        +             +   ++ T+ VR     
Sbjct: 67  RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAER 126

Query: 556 TEKNEALRKADEI 568
                  + A+ I
Sbjct: 127 EGVMLIKKTAENI 139


>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
           HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
           b.6.1.3 PDB: 1oe3_A* 2vn3_A 2zon_A* 1haw_A 1hau_A*
           2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A*
           1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* 1gs7_A* 2bp0_B 1gs6_X
           2bo0_A* ...
          Length = 336

 Score = 30.9 bits (69), Expect = 1.1
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                 +   +TW +  G     + T    G  ++ + N  +    E      +KV+G+ 
Sbjct: 263 KFANPPQRDLETWFIRGGSAGAALYTFKQPG--VYAYLNHNLIEAFELGAAGHIKVEGKW 320

Query: 440 IDHLSEGVAVFGPDGR 455
            D L + +    P  R
Sbjct: 321 NDDLMKQIKAPAPIPR 336


>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
           oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
          Length = 447

 Score = 31.0 bits (69), Expect = 1.1
 Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 2/36 (5%)

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
                   T  +P G    V    +  G   ++  +
Sbjct: 382 SPPLIGVQTVSVPPGGATIVDFKIDRAG--RYILVD 415


>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
           neurogenesis, polymorphism, splicing, glycoprotein,
           leucine-rich repeat; 1.80A {Homo sapiens}
          Length = 193

 Score = 30.9 bits (68), Expect = 1.2
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK 126
           D L     L    N +++V +G       +  L    +    D ++    +W+K   Y +
Sbjct: 99  DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK-SEYKE 157

Query: 127 LSKAT----EKLRKEGQSFDLVAETQNDCA 152
              A      ++    +        +  CA
Sbjct: 158 PGIARCAGPGEMA--DKLLLTTPSKKFTCA 185


>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
           HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
           PDB: 1h7u_A* 1ea6_A*
          Length = 365

 Score = 30.5 bits (68), Expect = 1.7
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
             L     +++ N++D    G+T I    +D G  +  V +NG  + E+  + +  + 
Sbjct: 33  LSLSTAVKELVENSLD---AGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKH 87


>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold,
           signaling protein; HET: HC4; 0.82A {Halorhodospira
           halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A*
           1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X*
           1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A*
           2qws_A* 2zoh_A* 2zoi_A* ...
          Length = 125

 Score = 30.5 bits (68), Expect = 1.7
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRL 474
             D+E   NTL K+    +D L+ G      DG I   N A      +  +  +
Sbjct: 8   SEDIE---NTLAKMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVI 58


>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP;
           2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
          Length = 391

 Score = 30.2 bits (68), Expect = 2.0
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSIPEDM 734
             D   L  +  +++ NA+D +  G    +I+    DN     SV+++G  IP  +
Sbjct: 29  TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS---VSVQDDGRGIPTGI 81


>3cnf_T VP3; cytoplasmic polyhedrosis virus, capsid protein, turret
           protein, polyhedrin-binding domain, guanylyltransferase
           domain; 3.88A {Bombyx mori cypovirus 1}
          Length = 1057

 Score = 29.8 bits (67), Expect = 2.1
 Identities = 28/225 (12%), Positives = 56/225 (24%), Gaps = 30/225 (13%)

Query: 474 LSPGTHIRNIAATCSRY--YNESDGWDLFAAIITSFD----DERKSLQGTLELLSDSVLE 527
           LS  T+++ +AA  + Y      +  DL               + +      L      +
Sbjct: 263 LSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYND 322

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE--IKNSFVQHVSYELRSPLT 585
              + +      L    +T                       I N+    + + L    T
Sbjct: 323 SRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTAYTSMNYISNTGQGRIKHSLAV--T 380

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA-------GIM 638
                T    T    S +      VE +S ++  +   V D        A       G  
Sbjct: 381 GTTEHTIADITLGPMSEDVVTISMVEPMSIAAEDMYGYVLDTPTRDIWPADEQIEQKGDA 440

Query: 639 KLNY-------------STIVLNDLLNEVKQSIATKMHENNIRIK 670
              Y             +  + + L   +     T +  + + + 
Sbjct: 441 VALYDTKTSRALGMFNNTVRIDDLLSPLLGLVYRTYIKGDTMTMT 485


>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant,
           AA(Gly)B, rossman fold, unliganded, conformation, blood
           group antigen, glycoprotein; HET: GOL; 1.25A {Homo
           sapiens} PDB: 3ioi_A* 3ioj_A* 1zhj_A* 2o1h_A* 2o1g_A*
           2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2riz_A 2rj0_A*
           2rj1_A* 2rj4_A* 1zi5_A* 1zi3_A* 1zi1_A* 1zjo_A* 2a8w_A*
           1lzi_A* ...
          Length = 298

 Score = 29.9 bits (67), Expect = 2.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
           E T N  + +    L N T+ + +F   +Y+ F
Sbjct: 41  EGTFNIDILNEQFRLQNTTIGLTVFAIKKYVAF 73


>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein
           structure initiati northeast structural genomics
           consortium; 2.60A {Desulfitobacterium hafniense}
          Length = 126

 Score = 29.6 bits (66), Expect = 2.4
 Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 9/116 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++ + + + +   +GR+  +N A                HI  I +       E    +L
Sbjct: 5   LETIEDMILIINREGRLLYANTAVPKKLGYTHEE-LMSMHILTITSAGKMAEGEKILAEL 63

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAE 552
           FA    S     +  +GT         +  I                +++   RA 
Sbjct: 64  FAGKKESLPLSLEKKEGTS-----IPAKARIWQGKWHNEPCLFAIIKDLSKEERAS 114


>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural
           genomics, midwest center for structural genomics; HET:
           PGE; 2.49A {Geobacter sulfurreducens}
          Length = 114

 Score = 29.8 bits (66), Expect = 2.4
 Identities = 5/28 (17%), Positives = 12/28 (42%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            +H    +A+F  + R    +  +R  +
Sbjct: 9   TEHAPAALAMFDREMRYLAVSRRWREDY 36


>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
           splicing, coiled coil, cytoplasmic vesicle, endocytosis,
           phosphoprotein, polymorphism; 2.78A {Homo sapiens}
          Length = 486

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 41  IILLIRQRNSLAKKVNETYS-FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL 99
           ++  + +R     ++ + Y+  L+E   +  +      +   +   W       E + +L
Sbjct: 41  LMNCLHER----ARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSEL 96

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIK 154
           H  +     + D    +NW K   + K      K  KE +     A+      +K
Sbjct: 97  HLEVKASLMNDDFEKIKNWQK-EAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLK 150


>1lzj_A Glycosyltransferase B; glycoprotein, transmembrane, signal-anchor,
           blood group antigen; HET: FUC BHG UDP; 1.32A {Homo
           sapiens} SCOP: c.68.1.9 PDB: 1lz7_A* 2rit_A 2rix_A*
           2riy_A* 2rj8_A* 2rj9_A* 1ziz_A* 1zj0_A* 1zj1_A* 1zj2_A*
           1zj3_A* 1zjp_A* 2a8u_A* 2i7b_A 2o1h_A* 2o1g_A* 2o1f_A
           2pgv_A 2pgy_A 2riz_A ...
          Length = 292

 Score = 29.7 bits (67), Expect = 2.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
           E T N  + +    L N T+ + +F   +Y+ F
Sbjct: 35  EGTFNIDILNEQFRLQNTTIGLTVFAIKKYVAF 67


>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
           {Sulfolobus tokodaii}
          Length = 472

 Score = 29.5 bits (65), Expect = 3.0
 Identities = 11/29 (37%), Positives = 11/29 (37%), Gaps = 7/29 (24%)

Query: 99  LHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
            H R D P  D       NW K   Y KL
Sbjct: 449 NHFREDYPYKD------PNWEK-RIYFKL 470


>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET:
           HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
          Length = 129

 Score = 29.6 bits (66), Expect = 3.1
 Identities = 8/38 (21%), Positives = 10/38 (26%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            T+  +     D L  G       G I   N     L 
Sbjct: 18  GTIDGMGTAEFDALPVGAIQVDGSGVIHRYNRTESRLS 55


>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
           feline sarcoma oncogene, structural genomics; NMR {Homo
           sapiens} PDB: 2dcr_A
          Length = 114

 Score = 28.8 bits (64), Expect = 4.4
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 21/96 (21%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD 172
           L  + W  +H  I  ++  E L   G  F LV E+Q      +     G      I SLD
Sbjct: 13  LHEQLW--YHGAIPRAEVAELLVHSG-DF-LVRESQGKQEYVLSVLWDGLPRHFIIQSLD 68

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
            +Y                  +    F S+  L+ H
Sbjct: 69  NLY-----------------RLEGEGFPSIPLLIDH 87


>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
           glycosyltransferase, transferase; 1.65A {Lactobacillus
           reuteri} PDB: 3kll_A* 3hz3_A*
          Length = 1039

 Score = 28.9 bits (64), Expect = 4.5
 Identities = 12/68 (17%), Positives = 22/68 (32%)

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            G T W+   +   V   + +N   +        L  G   +      K +N  +R + +
Sbjct: 167 TGSTDWLRTLMHEFVTKNSMWNKDSENVDYGGLQLQGGFLKYVNSDLTKYANSDWRLMNR 226

Query: 469 TEENRLSP 476
           T  N    
Sbjct: 227 TATNIDGK 234


>2o62_A Hypothetical protein; ZP_00105914.2, structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative; 1.75A {Nostoc punctiforme pcc 73102} SCOP:
           b.60.1.9 b.60.1.9
          Length = 270

 Score = 28.8 bits (64), Expect = 5.4
 Identities = 11/51 (21%), Positives = 17/51 (33%)

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           F P+G +     +   L     N+    T  R+      R +    G  LF
Sbjct: 23  FSPEGTLLNDTSSRLCLEGLNNNQTVRLTLSRSGKDDVIREFRSVGGGLLF 73


>3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled coil,
           cytoplasm, endocytosis, phosphoprotein, polymorphism,
           SH3 domain; 2.77A {Homo sapiens} PDB: 3hai_A
          Length = 325

 Score = 28.5 bits (63), Expect = 6.0
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 41  IILLIRQRNSLAKKVNETYS-FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL 99
           ++  +++R  +     + Y   L++   +  +      +   L   W       + + +L
Sbjct: 42  LMNCVQERAKI----EKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSEL 97

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIK 154
           HQ +     + DL   +NW K  ++ ++     K  KE +     A+      +K
Sbjct: 98  HQEVKNNLLNEDLEKVKNWQKDAYHKQIMGG-FKETKEAEDGFRKAQKPWAKKMK 151


>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein; HET:
           NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*
          Length = 549

 Score = 28.5 bits (63), Expect = 6.0
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI------ITSFDD 509
           + +S P F S+  +  +       + +     + Y   +DG +++           + DD
Sbjct: 300 VTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAFYGQ-TDGLEMYPGTILQDVFYHTDDD 358


>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism,
           TYRR protein, nucleotide-binding, transcription
           regulation, activator, repressor; HET: PG4; 2.3A
           {Escherichia coli}
          Length = 190

 Score = 28.6 bits (63), Expect = 6.0
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE------NRLSPGTHIRNIAATCSRYY 491
           ++ L E V       ++ ++NPA   L   K +        +L  G +      +  +  
Sbjct: 86  LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145

Query: 492 N----ESDGWDLFA---AIITSFDDERKSLQGTLELLSD 523
           +      +G +       +    ++++  L G + +L  
Sbjct: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS 184


>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex;
           HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP:
           d.14.1.3 d.122.1.2
          Length = 390

 Score = 28.1 bits (62), Expect = 6.9
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +    +F +IL NA+D +  G      V L     N D   +V++NG  IP D+
Sbjct: 29  GVEGYHHLFKEILDNAVDEALAGYATEILVRL-----NEDGSLTVEDNGRGIPVDL 79


>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A
           {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB:
           1qzr_A*
          Length = 418

 Score = 28.2 bits (62), Expect = 7.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 687 LLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDM 734
           L +IF +IL NA D   +  ++  +       +    VKN+G  IP ++
Sbjct: 65  LFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEI 113


>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
           {Colwellia psychrerythraea}
          Length = 605

 Score = 28.2 bits (62), Expect = 7.4
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 22/125 (17%)

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVY----KSSETHKDTWHLPNGQTLHVIVTSNP 408
           D+ +  L +     EQL    W  + +  +         H+   +L   +   +  +SN 
Sbjct: 472 DKQINQLVTDELTLEQLPTAQWTLHEWLHFINNLPVDLDHQRMVNL--DKAFDLTNSSNA 529

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
                W        + +   Y  +         +L          GR KL  P ++ L K
Sbjct: 530 EIAHAW------YLLSVRADYKEVYP---AMAKYLKS-------IGRRKLIVPLYKELAK 573

Query: 469 TEENR 473
             E++
Sbjct: 574 NAESK 578


>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
           protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
           {Homo sapiens} PDB: 3lll_A 3hah_A 3hai_A
          Length = 312

 Score = 28.3 bits (62), Expect = 8.0
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 41  IILLIRQRNSLAKKVNETYS-FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL 99
           ++  + +R  +     + Y+  L+E   +  +      +   +   W       E + +L
Sbjct: 48  LMNCLHERARI----EKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSEL 103

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
           H  +     + D    +NW K   + K      K  KE
Sbjct: 104 HLEVKASLMNDDFEKIKNWQK-EAFHKQMMGGFKETKE 140


>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
           structural genomics, structural genomics consortium,
           SGC; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
          Length = 155

 Score = 28.0 bits (62), Expect = 9.1
 Identities = 6/65 (9%), Positives = 20/65 (30%)

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           +E LEF  +  +  +  +          +++     +    +            N +  +
Sbjct: 62  EENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPS 121

Query: 413 IWMFE 417
           +  F+
Sbjct: 122 LTCFD 126


>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
           SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
           nucleus, phosphoprotein; NMR {Homo sapiens}
          Length = 116

 Score = 27.6 bits (61), Expect = 9.5
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 31/131 (23%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ-NDCAIKIEGRVSGSCAFLRILSL 171
           L+ ++W  +H  I   +A E L+K+G  F LV E+        +     G      I  +
Sbjct: 14  LAEQDW--YHGAIPRIEAQELLKKQG-DF-LVRESHGKPGEYVLSVYSDGQRRHFIIQYV 69

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           D +Y                       F ++  L+ H      ++         T+  G+
Sbjct: 70  DNMY-----------------RFEGTGFSNIPQLIDHHYTTKQVI---------TKKSGV 103

Query: 232 VFQKAIGESRK 242
           V    I + +K
Sbjct: 104 VLLNPIPKDKK 114


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 6,571,962
Number of extensions: 301014
Number of successful extensions: 1026
Number of sequences better than 10.0: 1
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 86
Length of query: 792
Length of database: 5,693,230
Length adjustment: 100
Effective length of query: 692
Effective length of database: 3,268,830
Effective search space: 2262030360
Effective search space used: 2262030360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)