HHsearch alignment for GI: 255764477 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=90.99 E-value=0.7 Score=25.96 Aligned_cols=38 Identities=34% Similarity=0.398 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHH----HCCCEE--EEHHHHHHHHHH
Q ss_conf 99988886667899999999----779869--990499999850
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK----KEKIPV--ISSDDIVDKLYH 40 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~----~~G~~v--~~aD~i~~~l~~ 40 (199)
T Consensus 103 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~ 146 (258)
T PRK09183 103 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLST 146 (258)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
T ss_conf 67998999986899999999999987993999789999999999