HHsearch alignment for GI: 255764477 and conserved domain: PRK12269
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional.
Probab=98.31 E-value=3.6e-05 Score=52.82 Aligned_cols=184 Identities=15% Similarity=0.178 Sum_probs=89.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH----HH--HH-HH---------------------HHHHHHH
Q ss_conf 5999888866678999999997-7986999049999985----00--00-11---------------------3566531
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLY----HY--EA-VD---------------------IIKKTFP 52 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~----~~--~~-~~---------------------~i~~~fg 52 (199)
T Consensus 35 iIIAIDGPAGSGKSTVAk~lA~~LG~~yLDTGAmYRaval~aLr~~~~l~~e~~~~~~d~d~a~~~a~~~~a~~ld~~~~ 114 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTSYA 114 (863)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 89998689867889999999998299588748899999999976411222112456654012332210121123320125
Q ss_pred HC-----C--CCC--------CCCCCCHHHHHHHHHH----------HHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00-----0--122--------2111000111100124----------6788875-3489999999976677420247633
Q gi|255764477|r 53 RS-----I--QNN--------KVNKARLLGILQKSPA----------KLEILEK-IVHPMVRMHEKKILHDLSCRGEKIV 106 (199)
Q Consensus 53 ~~-----i--~~~--------~i~r~~l~~~vf~~~~----------~l~~L~~-iiHP~V~~~~~~~i~~~~~~~~~~v 106 (199)
T Consensus 115 ~~~~~~~v~L~de~~~~~~~~~~~i~~~~~~v~lngedVt~~IRt~eV~~~AS~VAa~p~VR~aLv~~QR~~a~~~--Gv 192 (863)
T PRK12269 115 PLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGA--RV 192 (863)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC--CE
T ss_conf 5322222000211233222211342223552660775035555438888777777556999999999999885479--96
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC--CCCHHHHHH----HHHCCCCHHH--HHHHCC-EEEECCC-C
Q ss_conf 3456432555875642278999521113568888717--989899999----9972999789--998689-8998799-9
Q gi|255764477|r 107 FFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK--KHTEENFLF----ILSKQMNEKD--KISRAD-YVINTEG-T 176 (199)
Q Consensus 107 v~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~--~~s~e~~~~----~~~~Q~~~~~--k~~~aD-~vI~N~~-s 176 (199)
T Consensus 193 V~DGRDI-GTVVfPdA~lKIFLTAS~e~RA~RR~~Q~~~k~sleel~~dI~~RD~rDs~R~vAPLk~A~DAvlIDTS~LT 271 (863)
T PRK12269 193 VCEGRDL-TTVVFVDADLKCYLDASIEARVARRWAQGTSRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLT 271 (863)
T ss_pred EEECCCC-CCEECCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 8866878-655689998759997998999999986311458999999999987322154765788627862899789992
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 899999999999999
Q gi|255764477|r 177 IEAIEKETQKMLKYI 191 (199)
Q Consensus 177 ~~~l~~~i~~~~~~i 191 (199)
T Consensus 272 IeEVv---EKIl~~~ 283 (863)
T PRK12269 272 IEEVC---ERIAREA 283 (863)
T ss_pred HHHHH---HHHHHHH
T ss_conf 99999---9999987