HHsearch alignment for GI: 255764477 and conserved domain: TIGR00041

>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=96.81  E-value=0.015  Score=36.35  Aligned_cols=175  Identities=20%  Similarity=0.266  Sum_probs=88.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHHHHHHHHHH---HHHHHHHHHHHCC--CCCCCCCCCHHHHHHH
Q ss_conf             5999888866678999999997-----7986999049999985000---0113566531000--1222111000111100
Q gi|255764477|r    2 LIIGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDIVDKLYHYE---AVDIIKKTFPRSI--QNNKVNKARLLGILQK   71 (199)
Q Consensus         2 ~iIgitG~igSGKStv~~~l~~-----~G~~v~~aD~i~~~l~~~~---~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~   71 (199)
T Consensus         3 ~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~-------~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaA   75 (211)
T TIGR00041         3 MFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVL-------FTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAA   75 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE-------EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             458885115875899999999997751383478-------8718999878999999999874146663359999999998


Q ss_pred             HHH-HHHHHHHHHHHHHHHHH----HHHHH-HHHCCCCCCCCCCCCCCCCCC----CCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf             124-67888753489999999----97667-742024763334564325558----756422789995211135688887
Q gi|255764477|r   72 SPA-KLEILEKIVHPMVRMHE----KKILH-DLSCRGEKIVFFDTPLLFEKR----KEYLFDAVVVVTCSFETQRERVLS  141 (199)
Q Consensus        72 ~~~-~l~~L~~iiHP~V~~~~----~~~i~-~~~~~~~~~vv~e~pLL~E~~----~~~~~d~vi~V~a~~~~r~~Rl~~  141 (199)
T Consensus        76 dR~~HL~~~~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~-~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~d~e~al~R~~~  154 (211)
T TIGR00041        76 DRHDHLEHVEEKIKPALAQGKLVISDRYLFSSIAYQGLA-RGIDIDLVLELNEDALGDMKPDLTILLDIDPEVALERLRK  154 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHC
T ss_conf             589999978987788986696799841124357775422-5688889999977521135866689886073779887520


Q ss_pred             HCC---CCHHHHHH---HHHCC---CCHHHHHH----HCCEEEECCCC-HHHHHHHH
Q ss_conf             179---89899999---99729---99789998----68989987999-89999999
Q gi|255764477|r  142 RKK---HTEENFLF---ILSKQ---MNEKDKIS----RADYVINTEGT-IEAIEKET  184 (199)
Q Consensus       142 R~~---~s~e~~~~---~~~~Q---~~~~~k~~----~aD~vI~N~~s-~~~l~~~i  184 (199)
T Consensus       155 ~g~~~~~~~~~~e~~d~~~~v~~~Yl~L~~~~~rkGD~~~~~~Da~~~~~~~v~~~I  211 (211)
T TIGR00041       155 RGEDELLDREEFEKLDFFEKVRERYLELADKFERKGDKKIVVIDATNSGVEEVEQDI  211 (211)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHC
T ss_conf             472346655542118999999999999999841468863799866774478898609