HHsearch alignment for GI: 255764477 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=90.63 E-value=0.3 Score=28.25 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=26.9
Q ss_pred EEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHH
Q ss_conf 99888866678999999997-798699904999
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIV 35 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G~~v~~aD~i~ 35 (199)
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L~VPfAiADATt 187 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARILNVPFAIADATT 187 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEECCHHH
T ss_conf 245468885268999999987388742111110