HHsearch alignment for GI: 255764477 and conserved domain: TIGR00602
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=95.97 E-value=0.0044 Score=39.74 Aligned_cols=28 Identities=39% Similarity=0.509 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEE
Q ss_conf 999888866678999999997-7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~ 30 (199)
T Consensus 120 ~LLi~GPsGCgKsT~~k~LsKelg~~~~e 148 (670)
T TIGR00602 120 ILLITGPSGCGKSTTIKILSKELGIKVQE 148 (670)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78841755884478999998886445655