HHsearch alignment for GI: 255764477 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.38 E-value=0.00015 Score=49.05 Aligned_cols=99 Identities=16% Similarity=0.259 Sum_probs=60.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHH
Q ss_conf 999888866678999999997-----7986999049999985000011356653100012-2211100011110012467
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQN-NKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~-~~i~r~~l~~~vf~~~~~l 76 (199)
T Consensus 493 ~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA~--~-DP~--wLRRQ~gVVLQEn~LFsrSirdNI~l~~P~~~ 567 (703)
T TIGR01846 493 VIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLAI--A-DPA--WLRRQVGVVLQENVLFSRSIRDNIALCNPGAS 567 (703)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC--C-CCC--HHHHCCEEEEECCHHHCCCHHHHHHHCCCCCC
T ss_conf 799872789867899999886148888747770300010--1-852--01022302340002101227889851777769
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 888753489999999976677420247633345
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFD 109 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e 109 (199)
T Consensus 568 --~E~Vi~AA~LAGA~dFI~~Lp~-GY~T~vgE 597 (703)
T TIGR01846 568 --VEHVIAAAKLAGAHDFISELPQ-GYNTEVGE 597 (703)
T ss_pred --HHHHHHHHHHCCHHHHHHHCCC-CCCCCCEE
T ss_conf --8999999862185899973637-67740012