HHsearch alignment for GI: 255764477 and conserved domain: cd02030
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.57 E-value=4.8e-06 Score=58.35 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=39.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHC-----CCCHHHHHHHHHCC--CCHHHHHHHCCEEEE---CCCCHHHHHHHHH
Q ss_conf 2278999521113568888717-----98989999999729--997899986898998---7999899999999
Q gi|255764477|r 122 FDAVVVVTCSFETQRERVLSRK-----KHTEENFLFILSKQ--MNEKDKISRADYVIN---TEGTIEAIEKETQ 185 (199)
Q Consensus 122 ~d~vi~V~a~~~~r~~Rl~~R~-----~~s~e~~~~~~~~Q--~~~~~k~~~aD~vI~---N~~s~~~l~~~i~ 185 (199)
T Consensus 143 PdlvIYL~a~pe~~~~RI~kRgR~~E~~I~~~YL~~L~~~ye~~fl~~~~~~~~vlv~D~~~~~~~~~v~~~~e 216 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIE 216 (219)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99899983999999999998394754089999999999999999999886589679987665665999999998