HHsearch alignment for GI: 255764477 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.12 E-value=0.14 Score=30.25 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
T Consensus 24 itaivG~NGaGKSTLl~~i~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999899999999999986