HHsearch alignment for GI: 255764477 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.015 Score=36.42 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEH
Q ss_conf 999888866678999999997-----79869990
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISS 31 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~a 31 (199)
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 63 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDG 63 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 9999989998299999999667667886899999