HHsearch alignment for GI: 255764477 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.22 E-value=0.15 Score=30.20 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 9998888666789999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVA 18 (199)
Q Consensus 3 iIgitG~igSGKStv~ 18 (199)
T Consensus 23 ~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 23 LVVITGVSGSGKSSLA 38 (226)
T ss_pred EEEEECCCCCHHHHHH
T ss_conf 9999878996098983