Query gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs 113 out of 3199
Neff 7.6
Searched_HMMs 39220
Date Sun May 29 19:56:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764477.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00081 coaE dephospho-CoA ki 100.0 0 0 372.8 20.1 194 1-195 2-199 (199)
2 PRK03333 coaE dephospho-CoA ki 100.0 0 0 360.1 19.4 190 1-192 1-194 (394)
3 pfam01121 CoaE Dephospho-CoA k 100.0 0 0 350.0 16.3 175 2-179 1-179 (179)
4 KOG3220 consensus 100.0 0 0 338.3 16.5 194 1-194 1-198 (225)
5 cd02022 DPCK Dephospho-coenzym 100.0 0 0 325.8 15.9 175 3-179 1-179 (179)
6 COG0237 CoaE Dephospho-CoA kin 100.0 0 0 321.8 17.6 194 1-197 2-199 (201)
7 PRK01184 hypothetical protein; 100.0 1.7E-31 4.4E-36 217.8 14.6 170 1-193 1-180 (183)
8 TIGR00152 TIGR00152 dephospho- 99.9 1.5E-25 3.8E-30 180.6 9.9 182 3-184 1-192 (197)
9 PRK08356 hypothetical protein; 99.9 1.8E-23 4.7E-28 167.5 14.8 179 2-192 6-194 (195)
10 PRK05480 uridine kinase; Provi 99.6 3.2E-16 8.3E-21 122.1 6.8 183 2-191 7-205 (209)
11 PTZ00301 uridine kinase; Provi 99.6 1.3E-15 3.4E-20 118.3 4.3 183 1-190 3-209 (210)
12 PRK08233 hypothetical protein; 99.6 1.6E-14 4E-19 111.5 8.6 159 2-190 4-177 (182)
13 cd02023 UMPK Uridine monophosp 99.6 2E-15 5.2E-20 117.1 3.6 167 3-176 1-183 (198)
14 PRK04182 cytidylate kinase; Pr 99.5 2.8E-12 7.2E-17 97.4 15.4 158 2-193 1-175 (178)
15 PRK07429 phosphoribulokinase; 99.5 4.6E-14 1.2E-18 108.6 3.9 161 2-172 9-184 (331)
16 TIGR02173 cyt_kin_arch cytidyl 99.4 4.2E-13 1.1E-17 102.6 8.0 141 2-177 1-149 (173)
17 COG0572 Udk Uridine kinase [Nu 99.4 4.4E-13 1.1E-17 102.4 7.2 182 2-190 9-210 (218)
18 pfam00485 PRK Phosphoribulokin 99.4 4.7E-13 1.2E-17 102.3 4.3 162 3-172 1-188 (196)
19 cd02025 PanK Pantothenate kina 99.4 6.4E-13 1.6E-17 101.4 4.4 162 3-176 1-212 (220)
20 PRK07667 uridine kinase; Provi 99.4 3E-13 7.6E-18 103.5 2.6 163 2-172 15-190 (190)
21 COG1102 Cmk Cytidylate kinase 99.3 3.4E-11 8.6E-16 90.6 12.8 156 2-190 1-172 (179)
22 TIGR00235 udk uridine kinase; 99.3 4.7E-13 1.2E-17 102.2 1.5 180 2-188 11-219 (220)
23 PRK06696 uridine kinase; Valid 99.3 1.1E-11 2.8E-16 93.7 7.4 165 2-175 27-215 (227)
24 PRK03839 putative kinase; Prov 99.3 1.5E-10 3.8E-15 86.5 12.9 144 2-189 1-152 (180)
25 cd02026 PRK Phosphoribulokinas 99.3 3.9E-12 9.8E-17 96.5 4.7 159 3-172 1-175 (273)
26 PRK00131 aroK shikimate kinase 99.3 1.1E-10 2.9E-15 87.3 11.3 157 2-193 5-174 (175)
27 COG1936 Predicted nucleotide k 99.3 9.1E-11 2.3E-15 87.9 10.6 150 2-190 1-156 (180)
28 PRK13947 shikimate kinase; Pro 99.2 1.8E-10 4.6E-15 86.1 11.2 157 1-196 1-170 (171)
29 PRK13946 shikimate kinase; Pro 99.2 4.8E-10 1.2E-14 83.4 13.2 159 3-197 22-193 (195)
30 PRK03731 aroL shikimate kinase 99.2 5.3E-10 1.4E-14 83.1 12.0 152 3-190 4-170 (172)
31 cd02024 NRK1 Nicotinamide ribo 99.2 4.8E-12 1.2E-16 95.9 1.3 154 3-163 1-178 (187)
32 cd02028 UMPK_like Uridine mono 99.2 1.2E-11 3E-16 93.5 3.3 161 3-174 1-179 (179)
33 PRK00625 shikimate kinase; Pro 99.2 4.8E-10 1.2E-14 83.4 11.5 157 2-193 1-169 (173)
34 PRK08154 anaerobic benzoate ca 99.2 1.1E-09 2.9E-14 81.0 13.3 154 3-191 135-302 (304)
35 PRK13949 shikimate kinase; Pro 99.2 9.5E-10 2.4E-14 81.6 12.0 150 1-184 1-165 (169)
36 PRK09270 frcK putative fructos 99.2 5.6E-11 1.4E-15 89.3 5.5 165 2-176 35-225 (230)
37 PRK05057 aroK shikimate kinase 99.1 1.3E-09 3.3E-14 80.7 12.2 153 3-190 6-171 (172)
38 PRK13948 shikimate kinase; Pro 99.1 1.3E-09 3.4E-14 80.6 11.4 157 3-198 12-180 (182)
39 PRK02496 adk adenylate kinase; 99.1 4.3E-09 1.1E-13 77.4 12.0 160 1-189 1-183 (185)
40 PRK06547 hypothetical protein; 99.0 3.1E-09 8E-14 78.3 9.6 142 1-176 15-175 (184)
41 PRK00279 adk adenylate kinase; 99.0 2.1E-08 5.4E-13 73.1 12.0 163 2-191 1-215 (215)
42 COG0703 AroK Shikimate kinase 98.9 1.8E-08 4.7E-13 73.5 11.3 155 1-190 2-168 (172)
43 PRK05416 hypothetical protein; 98.9 6.4E-08 1.6E-12 70.1 13.4 144 1-189 6-160 (292)
44 COG0283 Cmk Cytidylate kinase 98.9 2.1E-07 5.4E-12 66.8 15.2 185 2-189 5-218 (222)
45 PRK00023 cmk cytidylate kinase 98.9 3.7E-07 9.4E-12 65.3 15.4 185 2-190 5-221 (225)
46 cd00464 SK Shikimate kinase (S 98.8 6.1E-08 1.6E-12 70.2 11.2 137 4-175 2-149 (154)
47 KOG3347 consensus 98.8 7.5E-08 1.9E-12 69.7 11.2 155 3-196 9-172 (176)
48 PRK00698 tmk thymidylate kinas 98.8 1.7E-08 4.3E-13 73.7 6.4 179 2-191 4-203 (204)
49 PRK11860 bifunctional 3-phosph 98.8 1.4E-06 3.5E-11 61.8 15.7 184 3-190 444-655 (662)
50 PRK09518 bifunctional cytidyla 98.8 4.9E-07 1.3E-11 64.5 13.3 187 1-190 4-227 (714)
51 PRK13477 bifunctional pantoate 98.7 7.1E-07 1.8E-11 63.5 13.8 184 3-190 286-503 (512)
52 pfam01202 SKI Shikimate kinase 98.7 1.8E-07 4.6E-12 67.3 10.2 144 10-188 1-157 (158)
53 pfam03668 ATP_bind_2 P-loop AT 98.7 5E-07 1.3E-11 64.5 12.1 146 1-189 1-155 (284)
54 pfam00625 Guanylate_kin Guanyl 98.7 2.8E-07 7.1E-12 66.1 10.7 66 124-190 115-181 (182)
55 COG1428 Deoxynucleoside kinase 98.7 1.2E-06 3.1E-11 62.1 13.3 129 1-148 4-152 (216)
56 PRK06217 hypothetical protein; 98.7 1.1E-07 2.9E-12 68.5 8.0 149 1-189 1-178 (185)
57 cd02020 CMPK Cytidine monophos 98.6 5.5E-07 1.4E-11 64.2 10.7 110 3-152 1-118 (147)
58 KOG3079 consensus 98.6 2.1E-06 5.3E-11 60.6 12.1 161 2-190 9-193 (195)
59 cd02030 NDUO42 NADH:Ubiquinone 98.6 4.8E-06 1.2E-10 58.3 13.9 64 122-185 143-216 (219)
60 TIGR01359 UMP_CMP_kin_fam UMP- 98.6 1.3E-06 3.3E-11 61.9 11.0 161 3-189 1-189 (189)
61 PRK04040 adenylate kinase; Pro 98.6 4E-06 1E-10 58.8 13.5 162 1-191 2-187 (189)
62 cd01672 TMPK Thymidine monopho 98.6 1.1E-06 2.8E-11 62.3 10.6 67 121-189 125-199 (200)
63 PRK09825 idnK D-gluconate kina 98.6 1.5E-06 3.9E-11 61.4 11.1 158 3-194 5-172 (176)
64 TIGR01360 aden_kin_iso1 adenyl 98.5 1.7E-06 4.3E-11 61.2 10.9 161 1-190 3-190 (191)
65 TIGR03263 guanyl_kin guanylate 98.5 5.7E-07 1.5E-11 64.1 8.3 165 2-189 2-179 (180)
66 PRK00300 gmk guanylate kinase; 98.5 8.3E-07 2.1E-11 63.1 8.4 166 2-189 8-186 (208)
67 smart00072 GuKc Guanylate kina 98.5 2.7E-06 7E-11 59.9 10.6 66 124-190 116-182 (184)
68 PRK11545 gntK gluconate kinase 98.5 3.5E-06 8.9E-11 59.2 10.8 154 2-189 9-172 (177)
69 COG0125 Tmk Thymidylate kinase 98.4 1E-05 2.6E-10 56.2 12.7 182 1-193 3-206 (208)
70 cd01428 ADK Adenylate kinase ( 98.4 1.4E-06 3.6E-11 61.6 8.2 114 3-143 1-126 (194)
71 PRK13808 adenylate kinase; Pro 98.4 1.9E-05 4.8E-10 54.6 13.5 164 2-196 1-199 (297)
72 COG1660 Predicted P-loop-conta 98.4 2.5E-06 6.3E-11 60.2 8.9 150 1-190 1-157 (286)
73 pfam00406 ADK Adenylate kinase 98.4 1.9E-06 4.9E-11 60.8 8.0 160 6-194 1-177 (186)
74 COG0194 Gmk Guanylate kinase [ 98.4 2.4E-06 6.2E-11 60.2 8.1 164 2-190 5-182 (191)
75 TIGR00017 cmk cytidylate kinas 98.3 1.3E-05 3.3E-10 55.6 11.1 142 1-143 2-164 (223)
76 PRK13951 bifunctional shikimat 98.3 1.6E-05 4E-10 55.1 11.3 144 2-182 1-154 (488)
77 PRK12269 bifunctional cytidyla 98.3 3.6E-05 9.3E-10 52.8 13.2 184 2-191 35-283 (863)
78 PRK05439 pantothenate kinase; 98.3 3.9E-06 9.9E-11 58.9 8.2 130 2-142 87-238 (312)
79 PRK10078 ribose 1,5-bisphospho 98.3 4.2E-06 1.1E-10 58.7 8.1 167 2-190 3-176 (184)
80 PRK05541 adenylylsulfate kinas 98.3 2.8E-06 7.1E-11 59.8 6.7 38 2-40 8-51 (176)
81 PRK13973 thymidylate kinase; P 98.3 3.3E-06 8.5E-11 59.3 6.9 182 2-194 4-210 (216)
82 KOG3308 consensus 98.2 2.3E-06 5.9E-11 60.3 5.6 181 2-190 5-204 (225)
83 PTZ00088 adenylate kinase 1; P 98.2 1E-05 2.6E-10 56.3 8.4 40 2-41 1-41 (225)
84 COG0563 Adk Adenylate kinase a 98.2 9.9E-06 2.5E-10 56.4 8.0 158 2-188 1-177 (178)
85 pfam02223 Thymidylate_kin Thym 98.2 5.4E-06 1.4E-10 58.0 6.5 64 121-184 118-186 (186)
86 pfam06414 Zeta_toxin Zeta toxi 98.2 2.8E-05 7.2E-10 53.5 9.9 36 2-37 13-52 (191)
87 cd01673 dNK Deoxyribonucleosid 98.1 2E-05 5.2E-10 54.4 8.9 28 3-30 1-29 (193)
88 TIGR03574 selen_PSTK L-seryl-t 98.1 7.7E-05 2E-09 50.8 11.7 54 124-177 98-154 (249)
89 PRK00889 adenylylsulfate kinas 98.1 3.9E-05 9.9E-10 52.7 10.0 37 2-38 5-47 (175)
90 cd02021 GntK Gluconate kinase 98.1 1.2E-05 3E-10 55.9 7.2 116 3-149 1-127 (150)
91 PRK03846 adenylylsulfate kinas 98.1 6.8E-05 1.7E-09 51.1 10.7 35 2-36 25-65 (198)
92 PRK08118 topology modulation p 98.1 3E-06 7.5E-11 59.6 3.5 37 1-37 1-38 (167)
93 PRK04220 2-phosphoglycerate ki 98.1 0.00041 1.1E-08 46.2 14.4 182 2-196 93-297 (306)
94 COG1072 CoaA Panthothenate kin 98.1 1.5E-05 3.8E-10 55.2 6.8 163 2-176 83-273 (283)
95 PRK13974 thymidylate kinase; P 98.1 0.00016 4E-09 48.8 11.9 178 2-190 4-206 (212)
96 COG2019 AdkA Archaeal adenylat 98.0 0.00022 5.6E-09 47.9 12.4 159 1-188 4-186 (189)
97 PRK12339 2-phosphoglycerate ki 98.0 0.0003 7.7E-09 47.1 12.1 175 2-188 4-195 (197)
98 COG4088 Predicted nucleotide k 97.9 5.1E-05 1.3E-09 51.9 7.8 138 1-172 1-155 (261)
99 TIGR01351 adk adenylate kinase 97.9 2.8E-05 7.2E-10 53.5 6.2 113 4-143 2-136 (232)
100 TIGR00455 apsK adenylylsulfate 97.9 3.2E-06 8.1E-11 59.5 1.0 148 2-185 20-184 (187)
101 PRK07261 topology modulation p 97.8 1.2E-05 3.2E-10 55.7 3.2 95 2-142 1-99 (171)
102 KOG3354 consensus 97.8 0.00011 2.8E-09 49.8 7.5 149 3-184 14-182 (191)
103 COG3265 GntK Gluconate kinase 97.8 0.00034 8.7E-09 46.7 9.7 148 8-190 2-159 (161)
104 PRK13975 thymidylate kinase; P 97.7 0.0005 1.3E-08 45.7 9.8 174 2-190 3-192 (198)
105 pfam01583 APS_kinase Adenylyls 97.6 0.00033 8.3E-09 46.9 7.5 35 2-36 3-43 (157)
106 cd02027 APSK Adenosine 5'-phos 97.6 0.00019 4.9E-09 48.3 6.3 34 3-36 1-40 (149)
107 PRK07933 thymidylate kinase; V 97.6 0.0016 4.1E-08 42.5 10.6 65 121-188 132-211 (213)
108 TIGR01313 therm_gnt_kin carboh 97.5 0.00043 1.1E-08 46.1 7.4 150 4-188 1-173 (175)
109 PRK13976 thymidylate kinase; P 97.5 0.002 5E-08 42.0 10.3 180 2-193 1-201 (202)
110 TIGR03167 tRNA_sel_U_synt tRNA 97.5 0.00084 2.1E-08 44.3 8.0 104 2-142 128-243 (311)
111 PRK06762 hypothetical protein; 97.4 0.0037 9.4E-08 40.3 11.1 145 2-191 3-162 (166)
112 TIGR01846 type_I_sec_HlyB type 97.4 0.00015 3.7E-09 49.0 3.2 99 3-109 493-597 (703)
113 COG1618 Predicted nucleotide k 97.4 0.00025 6.3E-09 47.6 4.2 101 1-116 5-116 (179)
114 pfam07931 CPT Chloramphenicol 97.3 0.0067 1.7E-07 38.6 10.9 160 2-188 2-173 (174)
115 COG3709 Uncharacterized compon 97.3 0.00095 2.4E-08 43.9 6.4 64 124-189 117-181 (192)
116 PRK13695 putative NTPase; Prov 97.2 0.0004 1E-08 46.3 4.0 28 1-28 3-34 (174)
117 COG0645 Predicted kinase [Gene 97.2 0.0035 8.8E-08 40.4 8.7 38 3-40 3-41 (170)
118 PRK12338 hypothetical protein; 97.2 0.023 5.7E-07 35.3 13.8 180 2-191 5-207 (320)
119 cd02029 PRK_like Phosphoribulo 97.2 0.00092 2.3E-08 44.0 5.5 62 102-163 117-186 (277)
120 pfam08433 KTI12 Chromatin asso 97.2 0.0048 1.2E-07 39.5 9.1 117 3-156 1-133 (266)
121 TIGR00750 lao LAO/AO transport 97.1 0.00065 1.7E-08 45.0 4.0 27 2-28 39-69 (333)
122 COG4185 Uncharacterized protei 97.1 0.0028 7.2E-08 41.0 7.1 136 6-177 7-159 (187)
123 TIGR03575 selen_PSTK_euk L-ser 97.0 0.017 4.3E-07 36.1 10.9 67 124-190 157-227 (340)
124 PRK11784 tRNA 2-selenouridine 97.0 0.00095 2.4E-08 43.9 4.0 34 3-36 139-172 (333)
125 KOG0707 consensus 96.9 0.0091 2.3E-07 37.8 8.9 65 126-190 153-221 (231)
126 PRK00091 miaA tRNA delta(2)-is 96.9 0.0015 3.8E-08 42.7 4.5 36 2-39 5-41 (304)
127 COG3911 Predicted ATPase [Gene 96.8 0.0015 3.9E-08 42.7 4.2 30 1-30 9-38 (183)
128 cd02019 NK Nucleoside/nucleoti 96.8 0.00076 1.9E-08 44.5 2.6 22 3-24 1-22 (69)
129 PRK13768 GTPase; Provisional 96.8 0.002 5E-08 41.9 4.6 41 1-41 2-49 (253)
130 TIGR00041 DTMP_kinase thymidyl 96.8 0.015 3.9E-07 36.3 9.1 175 2-184 3-211 (211)
131 KOG4235 consensus 96.7 0.0019 4.9E-08 42.0 4.0 130 6-154 27-191 (244)
132 COG4639 Predicted kinase [Gene 96.7 0.015 3.9E-07 36.4 8.4 121 2-157 3-132 (168)
133 COG0529 CysC Adenylylsulfate k 96.7 0.0024 6.2E-08 41.4 4.2 39 2-40 24-68 (197)
134 cd00227 CPT Chloramphenicol (C 96.6 0.072 1.8E-06 32.2 11.4 153 2-186 3-172 (175)
135 pfam03266 DUF265 Protein of un 96.6 0.0027 6.8E-08 41.1 3.7 26 3-28 1-30 (168)
136 TIGR02322 phosphon_PhnN phosph 96.4 0.014 3.7E-07 36.5 6.6 66 124-189 113-181 (183)
137 TIGR00972 3a0107s01c2 phosphat 96.3 0.002 5.1E-08 41.9 1.9 23 2-24 28-50 (248)
138 COG2074 2-phosphoglycerate kin 96.3 0.1 2.6E-06 31.2 12.4 174 3-190 91-287 (299)
139 COG2274 SunT ABC-type bacterio 96.3 0.0084 2.2E-07 38.0 5.0 169 3-190 501-703 (709)
140 COG1341 Predicted GTPase or GT 96.3 0.0057 1.5E-07 39.1 4.1 36 3-38 75-116 (398)
141 TIGR01448 recD_rel helicase, R 96.3 0.0032 8.2E-08 40.6 2.8 22 2-23 366-387 (769)
142 cd03116 MobB Molybdenum is an 96.3 0.006 1.5E-07 38.9 4.2 31 1-31 1-35 (159)
143 pfam01591 6PF2K 6-phosphofruct 96.2 0.012 3.1E-07 37.0 5.5 40 2-41 14-59 (223)
144 TIGR01663 PNK-3'Pase polynucle 96.2 0.0044 1.1E-07 39.8 3.2 35 3-37 371-406 (526)
145 cd03114 ArgK-like The function 96.2 0.0043 1.1E-07 39.8 3.1 41 92-132 81-123 (148)
146 pfam02492 cobW CobW/HypB/UreG, 96.2 0.015 3.7E-07 36.5 5.8 21 3-23 2-22 (174)
147 PRK05506 bifunctional sulfate 96.2 0.0088 2.3E-07 37.9 4.7 37 2-38 444-486 (613)
148 COG0324 MiaA tRNA delta(2)-iso 96.1 0.0079 2E-07 38.2 4.2 34 1-34 3-37 (308)
149 COG3640 CooC CO dehydrogenase 96.1 0.0072 1.8E-07 38.4 3.9 188 2-194 1-253 (255)
150 KOG2702 consensus 96.1 0.0018 4.6E-08 42.2 0.7 55 102-156 234-298 (323)
151 PRK05537 bifunctional sulfate 96.1 0.011 2.9E-07 37.2 4.8 38 2-39 393-437 (568)
152 pfam03215 Rad17 Rad17 cell cyc 96.1 0.0099 2.5E-07 37.6 4.5 29 2-30 46-75 (490)
153 pfam01745 IPT Isopentenyl tran 96.1 0.0076 1.9E-07 38.3 3.9 124 1-142 1-138 (232)
154 COG1703 ArgK Putative periplas 96.1 0.0046 1.2E-07 39.7 2.7 42 91-132 132-175 (323)
155 TIGR02881 spore_V_K stage V sp 96.0 0.0038 9.6E-08 40.2 2.1 19 5-23 46-64 (261)
156 TIGR02782 TrbB_P P-type conjug 96.0 0.0051 1.3E-07 39.4 2.6 21 3-23 141-161 (315)
157 TIGR00602 rad24 checkpoint pro 96.0 0.0044 1.1E-07 39.7 2.3 28 3-30 120-148 (670)
158 pfam03029 ATP_bind_1 Conserved 96.0 0.0057 1.5E-07 39.1 2.8 33 6-38 1-39 (234)
159 pfam03308 ArgK ArgK protein. T 95.9 0.007 1.8E-07 38.5 3.2 41 92-132 111-153 (267)
160 TIGR02211 LolD_lipo_ex lipopro 95.9 0.0063 1.6E-07 38.8 2.8 22 3-24 33-54 (221)
161 PRK08099 nicotinamide-nucleoti 95.9 0.1 2.6E-06 31.2 9.0 36 2-39 232-268 (411)
162 PRK09435 arginine/ornithine tr 95.8 0.0082 2.1E-07 38.1 3.1 21 2-22 50-70 (325)
163 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.7 0.01 2.6E-07 37.5 3.1 21 3-23 31-51 (238)
164 TIGR01193 bacteriocin_ABC ABC- 95.7 0.0088 2.2E-07 37.9 2.8 21 3-23 502-522 (710)
165 TIGR02788 VirB11 P-type DNA tr 95.6 0.0086 2.2E-07 37.9 2.7 23 2-24 159-181 (328)
166 KOG4203 consensus 95.6 0.0057 1.5E-07 39.1 1.6 59 117-175 169-237 (473)
167 TIGR02203 MsbA_lipidA lipid A 95.6 0.011 2.7E-07 37.4 2.9 38 2-39 389-431 (603)
168 TIGR02769 nickel_nikE nickel i 95.6 0.0084 2.1E-07 38.0 2.4 21 2-22 39-59 (267)
169 PRK10522 multidrug transporter 95.5 0.013 3.3E-07 36.8 3.0 21 3-23 351-371 (547)
170 cd03253 ABCC_ATM1_transporter 95.4 0.014 3.4E-07 36.7 3.1 28 3-30 29-61 (236)
171 KOG0635 consensus 95.4 0.0063 1.6E-07 38.8 1.3 38 2-39 32-75 (207)
172 KOG1384 consensus 95.4 0.015 3.9E-07 36.4 3.3 38 2-41 8-46 (348)
173 cd03252 ABCC_Hemolysin The ABC 95.4 0.013 3.4E-07 36.8 2.9 21 3-23 30-50 (237)
174 cd03110 Fer4_NifH_child This p 95.4 0.17 4.3E-06 29.9 8.6 120 4-137 2-130 (179)
175 cd03248 ABCC_TAP TAP, the Tran 95.4 0.014 3.5E-07 36.6 2.9 21 3-23 42-62 (226)
176 COG1763 MobB Molybdopterin-gua 95.3 0.019 4.8E-07 35.8 3.5 29 1-29 2-34 (161)
177 cd03254 ABCC_Glucan_exporter_l 95.3 0.015 3.7E-07 36.5 3.0 21 3-23 31-51 (229)
178 COG4608 AppF ABC-type oligopep 95.3 0.036 9.2E-07 34.0 5.0 122 3-129 41-184 (268)
179 cd03251 ABCC_MsbA MsbA is an e 95.3 0.015 3.8E-07 36.4 3.0 29 3-31 30-63 (234)
180 cd03246 ABCC_Protease_Secretio 95.3 0.015 3.9E-07 36.4 3.0 21 3-23 30-50 (173)
181 TIGR03015 pepcterm_ATPase puta 95.2 0.018 4.7E-07 35.9 3.3 21 3-23 45-65 (269)
182 PRK10789 putative multidrug tr 95.2 0.017 4.4E-07 36.0 3.0 28 3-30 343-375 (569)
183 PRK04195 replication factor C 95.2 0.02 5.2E-07 35.6 3.4 29 3-31 42-71 (403)
184 PRK13657 cyclic beta-1,2-gluca 95.2 0.018 4.5E-07 36.0 3.0 21 3-23 363-383 (585)
185 cd03289 ABCC_CFTR2 The CFTR su 95.2 0.018 4.6E-07 35.9 3.1 21 3-23 32-52 (275)
186 PRK11160 cysteine/glutathione 95.2 0.018 4.5E-07 36.0 3.0 21 3-23 369-389 (575)
187 KOG1970 consensus 95.1 0.023 5.8E-07 35.3 3.5 28 3-30 112-140 (634)
188 cd03245 ABCC_bacteriocin_expor 95.1 0.018 4.6E-07 35.9 2.9 29 3-31 32-65 (220)
189 PRK11174 cysteine/glutathione 95.1 0.019 4.8E-07 35.8 3.0 23 2-24 377-399 (588)
190 PRK10790 putative multidrug tr 95.1 0.019 4.9E-07 35.8 3.0 21 3-23 369-389 (593)
191 cd03291 ABCC_CFTR1 The CFTR su 95.1 0.019 4.9E-07 35.7 3.0 21 3-23 65-85 (282)
192 TIGR03018 pepcterm_TyrKin exop 95.1 0.13 3.3E-06 30.6 7.2 130 2-138 36-188 (207)
193 pfam07693 KAP_NTPase KAP famil 95.1 0.026 6.6E-07 34.9 3.6 28 2-29 21-54 (301)
194 cd03290 ABCC_SUR1_N The SUR do 95.0 0.021 5.5E-07 35.5 3.0 20 3-22 29-48 (218)
195 pfam05049 IIGP Interferon-indu 95.0 0.02 5E-07 35.7 2.8 24 2-25 36-59 (375)
196 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.023 5.8E-07 35.3 3.1 28 3-30 36-68 (207)
197 KOG0733 consensus 95.0 0.22 5.7E-06 29.1 8.2 133 4-141 226-371 (802)
198 cd03228 ABCC_MRP_Like The MRP 95.0 0.021 5.5E-07 35.4 3.0 21 3-23 30-50 (171)
199 cd03288 ABCC_SUR2 The SUR doma 95.0 0.022 5.7E-07 35.4 3.0 28 3-30 49-81 (257)
200 PRK13632 cbiO cobalt transport 94.9 0.023 5.9E-07 35.3 3.0 21 3-23 38-58 (273)
201 PRK06761 hypothetical protein; 94.9 0.028 7.1E-07 34.7 3.4 28 2-29 3-34 (281)
202 TIGR00958 3a01208 antigen pept 94.9 0.026 6.8E-07 34.9 3.3 32 3-34 561-597 (770)
203 PRK11176 lipid transporter ATP 94.8 0.019 4.8E-07 35.8 2.4 21 3-23 370-390 (581)
204 PRK10751 molybdopterin-guanine 94.8 0.038 9.7E-07 33.9 3.9 28 3-30 4-35 (170)
205 PRK13634 cbiO cobalt transport 94.8 0.023 6E-07 35.2 2.8 21 3-23 22-42 (276)
206 TIGR02475 CobW cobalamin biosy 94.8 0.01 2.6E-07 37.5 0.9 44 5-64 8-53 (349)
207 CHL00195 ycf46 Ycf46; Provisio 94.8 0.31 7.8E-06 28.2 8.5 37 4-40 262-301 (491)
208 KOG1969 consensus 94.8 0.047 1.2E-06 33.3 4.3 39 2-40 327-369 (877)
209 PRK13635 cbiO cobalt transport 94.8 0.026 6.8E-07 34.9 3.0 21 3-23 35-55 (279)
210 PRK13644 cbiO cobalt transport 94.8 0.028 7.1E-07 34.7 3.1 21 3-23 30-50 (274)
211 TIGR03375 type_I_sec_LssB type 94.8 0.025 6.3E-07 35.1 2.8 28 3-30 493-525 (694)
212 PRK10584 putative ABC transpor 94.8 0.026 6.5E-07 35.0 2.9 21 3-23 38-58 (228)
213 PRK13640 cbiO cobalt transport 94.8 0.027 6.8E-07 34.9 3.0 22 3-24 36-57 (283)
214 PRK13633 cobalt transporter AT 94.8 0.028 7.1E-07 34.7 3.1 22 3-24 39-60 (281)
215 cd03250 ABCC_MRP_domain1 Domai 94.8 0.028 7E-07 34.8 3.0 20 3-22 33-52 (204)
216 PRK06620 hypothetical protein; 94.7 0.045 1.1E-06 33.5 4.1 33 3-35 46-79 (214)
217 cd02037 MRP-like MRP (Multiple 94.7 0.26 6.7E-06 28.6 8.0 95 3-141 1-111 (169)
218 KOG3877 consensus 94.7 0.015 3.9E-07 36.4 1.7 41 2-42 72-116 (393)
219 COG1149 MinD superfamily P-loo 94.7 0.034 8.6E-07 34.2 3.4 35 1-35 1-41 (284)
220 COG1123 ATPase components of v 94.7 0.03 7.6E-07 34.6 3.2 21 3-23 319-339 (539)
221 cd03247 ABCC_cytochrome_bd The 94.7 0.027 6.9E-07 34.8 2.9 21 3-23 30-50 (178)
222 PRK13648 cbiO cobalt transport 94.7 0.031 7.9E-07 34.4 3.2 22 3-24 37-58 (269)
223 cd03257 ABC_NikE_OppD_transpor 94.7 0.029 7.4E-07 34.6 3.0 21 3-23 33-53 (228)
224 PRK13646 cbiO cobalt transport 94.7 0.03 7.7E-07 34.5 3.1 21 3-23 35-55 (286)
225 PRK10247 putative ABC transpor 94.6 0.033 8.4E-07 34.3 3.2 21 3-23 35-55 (225)
226 PRK13540 cytochrome c biogenes 94.6 0.033 8.4E-07 34.3 3.2 29 3-31 29-62 (200)
227 cd03244 ABCC_MRP_domain2 Domai 94.6 0.031 8E-07 34.4 3.1 21 3-23 32-52 (221)
228 PRK08939 primosomal protein Dn 94.6 0.03 7.7E-07 34.5 3.0 27 4-30 160-190 (306)
229 PRK13650 cbiO cobalt transport 94.6 0.03 7.7E-07 34.5 3.0 22 3-24 32-53 (276)
230 COG4598 HisP ABC-type histidin 94.6 0.07 1.8E-06 32.2 4.8 19 3-21 34-52 (256)
231 cd04104 p47_IIGP_like p47 (47- 94.6 0.035 9E-07 34.1 3.3 24 2-25 2-25 (197)
232 pfam02367 UPF0079 Uncharacteri 94.6 0.041 1.1E-06 33.7 3.6 25 3-27 17-42 (123)
233 PRK11264 putative amino-acid A 94.6 0.035 8.8E-07 34.1 3.2 21 3-23 29-49 (248)
234 PRK11629 lolD lipoprotein tran 94.5 0.034 8.7E-07 34.2 3.1 21 3-23 37-57 (233)
235 PRK11147 ABC transporter ATPas 94.5 0.031 7.9E-07 34.4 2.9 21 3-23 31-51 (632)
236 PRK13637 cbiO cobalt transport 94.5 0.031 7.8E-07 34.5 2.8 21 3-23 35-55 (287)
237 PRK11819 putative ABC transpor 94.5 0.035 8.8E-07 34.1 3.1 21 3-23 35-55 (556)
238 TIGR01420 pilT_fam twitching m 94.5 0.021 5.2E-07 35.6 1.9 19 3-21 129-147 (350)
239 PRK12337 2-phosphoglycerate ki 94.5 0.43 1.1E-05 27.3 14.1 177 2-190 263-468 (492)
240 PRK10419 nikE nickel transport 94.5 0.032 8.2E-07 34.4 2.9 22 3-24 40-61 (266)
241 cd03223 ABCD_peroxisomal_ALDP 94.5 0.035 9E-07 34.1 3.0 20 3-22 29-48 (166)
242 PRK13631 cbiO cobalt transport 94.5 0.038 9.6E-07 33.9 3.2 21 3-23 54-74 (320)
243 pfam05729 NACHT NACHT domain. 94.4 0.039 1E-06 33.8 3.2 21 3-23 2-22 (165)
244 TIGR00631 uvrb excinuclease AB 94.4 0.021 5.3E-07 35.5 1.8 25 5-29 33-58 (667)
245 PRK13649 cbiO cobalt transport 94.4 0.037 9.4E-07 34.0 3.0 21 3-23 35-55 (280)
246 COG1124 DppF ABC-type dipeptid 94.3 0.04 1E-06 33.7 3.1 21 3-23 35-55 (252)
247 TIGR03608 L_ocin_972_ABC putat 94.3 0.041 1E-06 33.7 3.1 21 3-23 26-46 (206)
248 PRK13642 cbiO cobalt transport 94.3 0.038 9.6E-07 33.9 2.9 21 3-23 35-55 (277)
249 PRK13643 cbiO cobalt transport 94.3 0.039 9.9E-07 33.8 3.0 21 3-23 34-54 (288)
250 COG1132 MdlB ABC-type multidru 94.3 0.043 1.1E-06 33.6 3.1 21 3-23 357-377 (567)
251 TIGR02324 CP_lyasePhnL phospho 94.3 0.033 8.5E-07 34.3 2.6 19 3-21 36-54 (224)
252 pfam00004 AAA ATPase family as 94.3 0.037 9.4E-07 34.0 2.7 27 5-31 2-29 (131)
253 TIGR02770 nickel_nikD nickel i 94.2 0.04 1E-06 33.8 2.9 22 2-23 13-34 (239)
254 PRK10636 putative ABC transpor 94.2 0.038 9.7E-07 33.9 2.7 20 3-22 29-48 (638)
255 cd03237 ABC_RNaseL_inhibitor_d 94.2 0.044 1.1E-06 33.5 3.0 21 3-23 27-47 (246)
256 PRK13647 cbiO cobalt transport 94.2 0.045 1.1E-06 33.4 3.0 21 3-23 33-53 (273)
257 cd03226 ABC_cobalt_CbiO_domain 94.2 0.048 1.2E-06 33.2 3.2 21 3-23 28-48 (205)
258 TIGR02982 heterocyst_DevA ABC 94.2 0.04 1E-06 33.7 2.8 51 3-58 33-91 (220)
259 cd03278 ABC_SMC_barmotin Barmo 94.2 0.045 1.1E-06 33.5 3.0 20 3-22 24-43 (197)
260 PRK11247 ssuB aliphatic sulfon 94.2 0.043 1.1E-06 33.6 2.9 21 3-23 40-60 (257)
261 PRK13549 xylose transporter AT 94.1 0.046 1.2E-06 33.4 3.1 21 3-23 33-53 (513)
262 COG1136 SalX ABC-type antimicr 94.1 0.05 1.3E-06 33.2 3.2 22 3-24 33-54 (226)
263 pfam00931 NB-ARC NB-ARC domain 94.1 0.045 1.2E-06 33.4 3.0 21 2-22 20-40 (285)
264 PRK13651 cobalt transporter AT 94.1 0.049 1.3E-06 33.2 3.2 21 3-23 35-55 (304)
265 PRK10938 putative molybdenum t 94.1 0.045 1.2E-06 33.4 2.9 21 3-23 31-51 (490)
266 cd03296 ABC_CysA_sulfate_impor 94.1 0.046 1.2E-06 33.4 3.0 21 3-23 30-50 (239)
267 KOG0057 consensus 94.1 0.047 1.2E-06 33.3 3.0 29 3-31 380-412 (591)
268 CHL00181 cbbX CbbX; Provisiona 94.1 0.049 1.2E-06 33.2 3.1 21 3-23 61-81 (287)
269 TIGR01842 type_I_sec_PrtD type 94.1 0.041 1E-06 33.7 2.7 32 3-34 358-394 (556)
270 CHL00131 ycf16 sulfate ABC tra 94.1 0.049 1.2E-06 33.2 3.1 21 3-23 34-54 (252)
271 PRK05800 cobU adenosylcobinami 94.1 0.051 1.3E-06 33.1 3.2 27 1-27 1-28 (170)
272 PRK10636 putative ABC transpor 94.1 0.044 1.1E-06 33.5 2.8 21 3-23 340-360 (638)
273 PRK11147 ABC transporter ATPas 94.0 0.045 1.1E-06 33.4 2.9 21 3-23 347-367 (632)
274 cd03260 ABC_PstB_phosphate_tra 94.0 0.053 1.3E-06 33.0 3.2 22 3-24 28-49 (227)
275 cd03258 ABC_MetN_methionine_tr 94.0 0.045 1.2E-06 33.4 2.8 22 3-24 33-54 (233)
276 PRK11819 putative ABC transpor 94.0 0.048 1.2E-06 33.3 2.9 21 3-23 352-372 (556)
277 PRK13645 cbiO cobalt transport 94.0 0.049 1.3E-06 33.2 3.0 21 3-23 39-59 (289)
278 PRK13546 teichoic acids export 94.0 0.052 1.3E-06 33.0 3.1 37 159-195 202-245 (264)
279 COG3172 NadR Predicted ATPase/ 94.0 0.049 1.2E-06 33.2 2.9 36 1-38 8-44 (187)
280 PRK11308 dppF dipeptide transp 94.0 0.041 1.1E-06 33.7 2.6 21 3-23 43-63 (327)
281 COG4619 ABC-type uncharacteriz 94.0 0.05 1.3E-06 33.2 2.9 68 3-70 31-108 (223)
282 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.0 0.051 1.3E-06 33.1 3.0 21 3-23 32-52 (218)
283 cd03231 ABC_CcmA_heme_exporter 93.9 0.057 1.5E-06 32.8 3.2 21 3-23 28-48 (201)
284 PRK11519 tyrosine kinase; Prov 93.9 0.29 7.4E-06 28.4 6.8 121 2-132 527-669 (720)
285 PRK13641 cbiO cobalt transport 93.9 0.047 1.2E-06 33.3 2.8 21 3-23 35-55 (286)
286 PRK13851 type IV secretion sys 93.9 0.054 1.4E-06 32.9 3.1 22 3-24 164-185 (343)
287 pfam10662 PduV-EutP Ethanolami 93.9 0.055 1.4E-06 32.9 3.1 24 1-24 1-24 (143)
288 PRK09580 sufC cysteine desulfu 93.9 0.057 1.5E-06 32.8 3.2 22 3-24 29-50 (248)
289 TIGR03269 met_CoM_red_A2 methy 93.9 0.054 1.4E-06 32.9 3.0 22 3-24 28-49 (520)
290 TIGR02868 CydC ABC transporter 93.9 0.047 1.2E-06 33.3 2.7 29 3-31 389-422 (566)
291 TIGR02857 CydD ABC transporter 93.9 0.049 1.2E-06 33.2 2.8 27 3-29 380-411 (570)
292 PRK10744 phosphate transporter 93.9 0.059 1.5E-06 32.7 3.2 22 3-24 38-59 (257)
293 PRK09493 glnQ glutamine ABC tr 93.9 0.058 1.5E-06 32.7 3.1 21 3-23 29-49 (240)
294 PRK11831 putative ABC transpor 93.8 0.055 1.4E-06 32.9 3.0 21 3-23 36-56 (269)
295 cd03292 ABC_FtsE_transporter F 93.8 0.062 1.6E-06 32.6 3.2 22 3-24 29-50 (214)
296 TIGR01447 recD exodeoxyribonuc 93.8 0.042 1.1E-06 33.7 2.3 18 4-21 245-262 (753)
297 cd03293 ABC_NrtD_SsuB_transpor 93.8 0.056 1.4E-06 32.8 3.0 21 3-23 32-52 (220)
298 PRK13342 recombination factor 93.8 0.088 2.2E-06 31.6 4.0 28 4-31 40-70 (417)
299 COG1134 TagH ABC-type polysacc 93.8 0.06 1.5E-06 32.6 3.1 21 3-23 55-75 (249)
300 cd03236 ABC_RNaseL_inhibitor_d 93.8 0.061 1.6E-06 32.6 3.1 21 3-23 28-48 (255)
301 TIGR03269 met_CoM_red_A2 methy 93.8 0.053 1.3E-06 33.0 2.8 21 3-23 312-332 (520)
302 PRK10771 thiQ thiamine transpo 93.8 0.061 1.6E-06 32.6 3.1 21 3-23 27-47 (233)
303 COG0378 HypB Ni2+-binding GTPa 93.8 0.056 1.4E-06 32.8 2.9 35 1-35 13-52 (202)
304 TIGR00176 mobB molybdopterin-g 93.8 0.048 1.2E-06 33.3 2.6 28 3-30 1-32 (165)
305 cd02040 NifH NifH gene encodes 93.8 0.082 2.1E-06 31.8 3.8 33 1-33 1-39 (270)
306 cd03295 ABC_OpuCA_Osmoprotecti 93.8 0.058 1.5E-06 32.7 3.0 21 3-23 29-49 (242)
307 TIGR00630 uvra excinuclease AB 93.8 0.036 9.3E-07 34.0 1.9 36 2-39 23-63 (956)
308 pfam08303 tRNA_lig_kinase tRNA 93.7 0.026 6.7E-07 34.9 1.2 30 7-36 5-36 (169)
309 cd03262 ABC_HisP_GlnQ_permease 93.7 0.062 1.6E-06 32.6 3.1 21 3-23 28-48 (213)
310 PRK11701 phnK phosphonates tra 93.7 0.066 1.7E-06 32.4 3.2 21 3-23 34-54 (258)
311 PRK10938 putative molybdenum t 93.7 0.061 1.6E-06 32.6 3.0 21 3-23 288-308 (490)
312 PRK13652 cbiO cobalt transport 93.7 0.06 1.5E-06 32.7 3.0 21 3-23 32-52 (277)
313 PRK13900 type IV secretion sys 93.7 0.065 1.7E-06 32.4 3.1 22 3-24 162-183 (332)
314 PRK13549 xylose transporter AT 93.7 0.059 1.5E-06 32.7 2.9 21 3-23 290-310 (513)
315 cd03294 ABC_Pro_Gly_Bertaine T 93.7 0.059 1.5E-06 32.7 2.9 22 3-24 52-73 (269)
316 PRK10575 iron-hydroxamate tran 93.7 0.062 1.6E-06 32.5 3.0 21 3-23 39-59 (265)
317 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.7 0.064 1.6E-06 32.5 3.0 21 3-23 28-48 (144)
318 cd03234 ABCG_White The White s 93.6 0.066 1.7E-06 32.4 3.1 21 3-23 35-55 (226)
319 TIGR00150 TIGR00150 conserved 93.6 0.11 2.8E-06 31.0 4.2 26 2-27 29-55 (147)
320 cd03297 ABC_ModC_molybdenum_tr 93.6 0.064 1.6E-06 32.5 3.0 21 3-23 25-45 (214)
321 pfam03205 MobB Molybdopterin g 93.6 0.11 2.8E-06 31.0 4.2 27 3-29 2-32 (122)
322 PRK09473 oppD oligopeptide tra 93.6 0.059 1.5E-06 32.7 2.8 21 3-23 44-64 (330)
323 cd03256 ABC_PhnC_transporter A 93.6 0.068 1.7E-06 32.3 3.1 21 3-23 29-49 (241)
324 PRK13341 recombination factor 93.6 0.1 2.7E-06 31.1 4.0 28 4-31 55-85 (726)
325 PRK13636 cbiO cobalt transport 93.6 0.071 1.8E-06 32.2 3.1 28 3-30 34-66 (285)
326 PRK09087 hypothetical protein; 93.5 0.1 2.7E-06 31.2 4.0 35 3-37 46-81 (226)
327 cd03261 ABC_Org_Solvent_Resist 93.5 0.071 1.8E-06 32.2 3.1 21 3-23 28-48 (235)
328 PRK09700 D-allose transporter 93.5 0.069 1.8E-06 32.3 3.0 21 3-23 33-53 (510)
329 KOG3062 consensus 93.5 0.065 1.7E-06 32.4 2.9 23 1-23 1-23 (281)
330 cd03225 ABC_cobalt_CbiO_domain 93.5 0.076 1.9E-06 32.0 3.2 21 3-23 29-49 (211)
331 PRK11248 tauB taurine transpor 93.5 0.07 1.8E-06 32.2 3.0 21 3-23 29-49 (255)
332 cd03229 ABC_Class3 This class 93.5 0.074 1.9E-06 32.1 3.1 21 3-23 28-48 (178)
333 PRK10762 D-ribose transporter 93.5 0.073 1.9E-06 32.1 3.1 21 3-23 32-52 (501)
334 PRK11124 artP arginine transpo 93.4 0.076 1.9E-06 32.0 3.2 21 3-23 30-50 (242)
335 PRK13538 cytochrome c biogenes 93.4 0.08 2E-06 31.9 3.2 21 3-23 29-49 (204)
336 pfam00437 GSPII_E Type II/IV s 93.4 0.068 1.7E-06 32.3 2.8 21 3-23 141-161 (283)
337 cd03222 ABC_RNaseL_inhibitor T 93.4 0.081 2.1E-06 31.8 3.2 21 3-23 27-47 (177)
338 cd02035 ArsA ArsA ATPase funct 93.4 0.52 1.3E-05 26.8 7.4 31 3-33 1-37 (217)
339 PTZ00265 multidrug resistance 93.4 0.07 1.8E-06 32.3 2.9 28 2-29 412-444 (1467)
340 PRK13639 cbiO cobalt transport 93.4 0.076 1.9E-06 32.0 3.1 21 3-23 30-50 (275)
341 PRK10982 galactose/methyl gala 93.4 0.079 2E-06 31.9 3.1 21 3-23 26-46 (491)
342 smart00382 AAA ATPases associa 93.4 0.08 2E-06 31.9 3.2 36 2-37 3-44 (148)
343 cd02034 CooC The accessory pro 93.4 0.1 2.6E-06 31.2 3.7 31 3-33 1-37 (116)
344 PRK10619 histidine/lysine/argi 93.3 0.079 2E-06 31.9 3.1 21 3-23 33-53 (257)
345 TIGR02533 type_II_gspE general 93.3 0.042 1.1E-06 33.6 1.7 22 3-24 247-269 (495)
346 PRK13543 cytochrome c biogenes 93.3 0.085 2.2E-06 31.7 3.2 21 3-23 39-59 (214)
347 PRK11288 araG L-arabinose tran 93.3 0.071 1.8E-06 32.2 2.8 21 3-23 32-52 (501)
348 PRK10908 cell division protein 93.3 0.075 1.9E-06 32.0 2.9 21 3-23 30-50 (222)
349 KOG4181 consensus 93.3 0.13 3.3E-06 30.6 4.1 23 2-24 189-211 (491)
350 PRK13833 conjugal transfer pro 93.3 0.068 1.7E-06 32.3 2.7 21 3-23 146-166 (323)
351 PRK10418 nikD nickel transport 93.3 0.072 1.8E-06 32.1 2.8 22 3-24 31-52 (254)
352 cd03300 ABC_PotA_N PotA is an 93.2 0.085 2.2E-06 31.7 3.1 21 3-23 28-48 (232)
353 pfam00142 Fer4_NifH 4Fe-4S iro 93.2 0.21 5.3E-06 29.3 5.1 30 3-32 2-37 (269)
354 cd00267 ABC_ATPase ABC (ATP-bi 93.2 0.09 2.3E-06 31.6 3.2 21 3-23 27-47 (157)
355 PRK10646 putative ATPase; Prov 93.2 0.099 2.5E-06 31.3 3.4 24 3-26 30-54 (153)
356 PRK10261 glutathione transport 93.2 0.083 2.1E-06 31.8 3.0 22 3-24 44-65 (623)
357 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.1 0.089 2.3E-06 31.6 3.1 21 3-23 50-70 (224)
358 cd03299 ABC_ModC_like Archeal 93.1 0.085 2.2E-06 31.7 3.0 21 3-23 27-47 (235)
359 PRK11288 araG L-arabinose tran 93.1 0.089 2.3E-06 31.6 3.1 20 3-22 281-300 (501)
360 COG1117 PstB ABC-type phosphat 93.1 0.047 1.2E-06 33.3 1.6 23 2-24 34-56 (253)
361 cd03233 ABC_PDR_domain1 The pl 93.1 0.093 2.4E-06 31.5 3.1 22 3-24 35-56 (202)
362 KOG1532 consensus 93.1 0.13 3.3E-06 30.6 3.8 38 2-39 20-63 (366)
363 TIGR01186 proV glycine betaine 93.1 0.14 3.5E-06 30.4 4.0 34 3-36 21-59 (372)
364 KOG0054 consensus 93.1 0.091 2.3E-06 31.5 3.1 20 2-21 548-567 (1381)
365 COG0489 Mrp ATPases involved i 93.1 0.63 1.6E-05 26.3 7.3 130 3-139 59-207 (265)
366 cd00009 AAA The AAA+ (ATPases 93.0 0.15 3.9E-06 30.1 4.2 36 3-38 21-62 (151)
367 PRK11022 dppD dipeptide transp 93.0 0.082 2.1E-06 31.8 2.8 22 3-24 35-56 (327)
368 PRK10070 glycine betaine trans 93.0 0.09 2.3E-06 31.6 3.0 21 3-23 56-76 (400)
369 PRK13541 cytochrome c biogenes 93.0 0.099 2.5E-06 31.3 3.2 21 3-23 28-48 (195)
370 cd03298 ABC_ThiQ_thiamine_tran 93.0 0.093 2.4E-06 31.4 3.0 21 3-23 26-46 (211)
371 TIGR00174 miaA tRNA delta(2)-i 93.0 0.11 2.7E-06 31.1 3.3 36 3-40 1-37 (307)
372 cd03213 ABCG_EPDR ABCG transpo 93.0 0.095 2.4E-06 31.4 3.1 21 3-23 37-57 (194)
373 KOG1534 consensus 93.0 0.11 2.7E-06 31.1 3.3 36 1-36 1-44 (273)
374 PRK13544 consensus 93.0 0.1 2.6E-06 31.2 3.2 21 3-23 29-49 (208)
375 TIGR03415 ABC_choXWV_ATP choli 93.0 0.095 2.4E-06 31.4 3.0 22 3-24 52-73 (382)
376 COG5324 Uncharacterized conser 93.0 0.039 1E-06 33.8 1.1 30 6-35 379-409 (758)
377 PRK09452 potA putrescine/sperm 92.9 0.095 2.4E-06 31.4 3.0 21 3-23 45-65 (378)
378 cd03232 ABC_PDR_domain2 The pl 92.9 0.1 2.6E-06 31.2 3.1 21 3-23 35-55 (192)
379 cd03217 ABC_FeS_Assembly ABC-t 92.9 0.097 2.5E-06 31.3 3.0 21 3-23 28-48 (200)
380 COG4615 PvdE ABC-type sideroph 92.9 0.095 2.4E-06 31.4 3.0 21 3-23 351-371 (546)
381 pfam04665 Pox_A32 Poxvirus A32 92.9 0.086 2.2E-06 31.7 2.8 27 2-28 14-43 (241)
382 PRK10851 sulfate/thiosulfate t 92.9 0.096 2.4E-06 31.4 3.0 22 3-24 30-51 (352)
383 PRK11153 metN DL-methionine tr 92.9 0.097 2.5E-06 31.3 3.0 21 3-23 33-53 (343)
384 PRK13547 hmuV hemin importer A 92.9 0.096 2.5E-06 31.4 3.0 21 3-23 29-49 (273)
385 PRK11614 livF leucine/isoleuci 92.9 0.1 2.5E-06 31.3 3.0 21 3-23 33-53 (237)
386 PRK13638 cbiO cobalt transport 92.9 0.1 2.7E-06 31.1 3.1 21 3-23 29-49 (271)
387 KOG0058 consensus 92.9 0.11 2.9E-06 30.9 3.3 23 2-24 495-517 (716)
388 CHL00175 minD septum-site dete 92.8 0.72 1.8E-05 25.9 7.4 130 2-137 14-162 (279)
389 cd01130 VirB11-like_ATPase Typ 92.8 0.11 2.8E-06 31.1 3.1 22 3-24 27-48 (186)
390 cd03215 ABC_Carb_Monos_II This 92.8 0.07 1.8E-06 32.2 2.2 21 3-23 28-48 (182)
391 PRK13539 cytochrome c biogenes 92.8 0.11 2.9E-06 30.9 3.2 21 3-23 30-50 (206)
392 PRK13409 putative ATPase RIL; 92.8 0.11 2.7E-06 31.1 3.1 22 2-23 100-121 (590)
393 cd03216 ABC_Carb_Monos_I This 92.7 0.11 2.9E-06 30.9 3.2 21 3-23 28-48 (163)
394 cd03238 ABC_UvrA The excision 92.7 0.095 2.4E-06 31.4 2.8 19 3-21 23-41 (176)
395 PTZ00265 multidrug resistance 92.7 0.11 2.9E-06 30.9 3.2 23 2-24 1196-1218(1467)
396 PRK09984 phosphonate/organopho 92.7 0.11 2.9E-06 30.9 3.1 22 3-24 32-53 (262)
397 KOG1533 consensus 92.7 0.095 2.4E-06 31.4 2.7 37 2-38 3-45 (290)
398 PRK09544 znuC high-affinity zi 92.7 0.12 3E-06 30.8 3.2 21 3-23 32-52 (251)
399 cd03301 ABC_MalK_N The N-termi 92.7 0.12 3E-06 30.9 3.1 21 3-23 28-48 (213)
400 COG1116 TauB ABC-type nitrate/ 92.6 0.12 3.1E-06 30.7 3.2 21 3-23 31-51 (248)
401 cd03235 ABC_Metallic_Cations A 92.6 0.12 3.1E-06 30.7 3.2 21 3-23 27-47 (213)
402 PRK10982 galactose/methyl gala 92.6 0.11 2.8E-06 31.0 3.0 21 3-23 276-296 (491)
403 TIGR02528 EutP ethanolamine ut 92.6 0.065 1.6E-06 32.5 1.8 23 2-24 1-23 (144)
404 cd03230 ABC_DR_subfamily_A Thi 92.6 0.12 3.1E-06 30.7 3.2 21 3-23 28-48 (173)
405 COG1122 CbiO ABC-type cobalt t 92.6 0.11 2.7E-06 31.1 2.9 21 3-23 32-52 (235)
406 PRK13548 hmuV hemin importer A 92.6 0.12 3.1E-06 30.7 3.2 21 3-23 30-50 (257)
407 KOG0055 consensus 92.6 0.13 3.3E-06 30.6 3.3 22 2-23 380-401 (1228)
408 PRK10895 putative ABC transpor 92.5 0.13 3.2E-06 30.6 3.2 21 3-23 31-51 (241)
409 pfam05496 RuvB_N Holliday junc 92.5 0.098 2.5E-06 31.3 2.6 27 5-31 54-83 (234)
410 PRK10261 glutathione transport 92.5 0.11 2.7E-06 31.1 2.8 21 3-23 352-372 (623)
411 TIGR00968 3a0106s01 sulfate AB 92.5 0.11 2.9E-06 30.9 2.9 39 3-41 28-71 (241)
412 PRK10535 macrolide transporter 92.5 0.12 3E-06 30.8 3.0 21 3-23 36-56 (648)
413 COG1123 ATPase components of v 92.5 0.12 3.1E-06 30.8 3.0 21 3-23 37-57 (539)
414 pfam09848 DUF2075 Uncharacteri 92.5 0.12 3.1E-06 30.8 3.0 20 2-21 2-21 (348)
415 PRK11650 ugpC glycerol-3-phosp 92.5 0.12 3E-06 30.8 3.0 22 3-24 32-53 (358)
416 cd03224 ABC_TM1139_LivF_branch 92.4 0.13 3.2E-06 30.6 3.1 21 3-23 28-48 (222)
417 PRK10762 D-ribose transporter 92.4 0.12 3.1E-06 30.8 2.9 21 3-23 280-300 (501)
418 cd03263 ABC_subfamily_A The AB 92.4 0.14 3.5E-06 30.4 3.2 21 3-23 30-50 (220)
419 cd03214 ABC_Iron-Siderophores_ 92.4 0.14 3.5E-06 30.4 3.2 21 3-23 27-47 (180)
420 cd03259 ABC_Carb_Solutes_like 92.3 0.13 3.4E-06 30.5 3.1 21 3-23 28-48 (213)
421 PRK06851 hypothetical protein; 92.3 0.21 5.4E-06 29.2 4.1 28 1-28 31-62 (368)
422 COG1118 CysA ABC-type sulfate/ 92.3 0.13 3.4E-06 30.5 3.1 30 3-32 30-64 (345)
423 PRK09700 D-allose transporter 92.3 0.12 3.2E-06 30.7 2.9 21 3-23 291-311 (510)
424 cd03219 ABC_Mj1267_LivG_branch 92.3 0.14 3.6E-06 30.4 3.2 21 3-23 28-48 (236)
425 PRK13764 ATPase; Provisional 92.3 0.12 3E-06 30.8 2.8 25 4-28 262-290 (605)
426 pfam05707 Zot Zonular occluden 92.2 0.079 2E-06 31.9 1.8 28 2-29 1-33 (183)
427 cd03271 ABC_UvrA_II The excisi 92.2 0.12 3E-06 30.8 2.7 18 2-19 22-39 (261)
428 PRK11000 maltose/maltodextrin 92.2 0.13 3.4E-06 30.4 3.0 21 3-23 31-51 (369)
429 cd03267 ABC_NatA_like Similar 92.2 0.14 3.6E-06 30.3 3.1 21 3-23 49-69 (236)
430 PRK10246 exonuclease subunit S 92.2 0.14 3.6E-06 30.3 3.0 19 3-21 32-50 (1047)
431 TIGR02315 ABC_phnC phosphonate 92.1 0.13 3.4E-06 30.5 2.9 22 3-24 30-51 (253)
432 cd03240 ABC_Rad50 The catalyti 92.1 0.14 3.7E-06 30.3 3.1 20 3-22 24-43 (204)
433 PRK06851 hypothetical protein; 92.0 0.21 5.4E-06 29.2 3.8 28 2-29 216-247 (368)
434 COG4240 Predicted kinase [Gene 92.0 0.14 3.5E-06 30.4 2.8 34 2-35 51-91 (300)
435 COG4167 SapF ABC-type antimicr 92.0 0.14 3.5E-06 30.4 2.9 21 3-23 41-61 (267)
436 TIGR01526 nadR_NMN_Atrans nico 92.0 0.17 4.3E-06 29.8 3.3 38 2-40 176-213 (346)
437 PRK13894 conjugal transfer ATP 92.0 0.13 3.3E-06 30.6 2.7 21 3-23 151-171 (320)
438 PRK11300 livG leucine/isoleuci 92.0 0.15 3.9E-06 30.1 3.0 21 3-23 33-53 (255)
439 COG0541 Ffh Signal recognition 91.9 0.21 5.5E-06 29.2 3.8 40 3-47 102-147 (451)
440 PTZ00243 ABC transporter; Prov 91.9 0.15 3.7E-06 30.2 2.9 20 3-22 688-707 (1560)
441 PRK13542 consensus 91.9 0.17 4.3E-06 29.8 3.2 21 3-23 46-66 (224)
442 COG1126 GlnQ ABC-type polar am 91.9 0.17 4.3E-06 29.8 3.2 32 3-34 30-66 (240)
443 COG0444 DppD ABC-type dipeptid 91.9 0.16 4E-06 30.0 3.0 21 3-23 33-53 (316)
444 PRK13409 putative ATPase RIL; 91.8 0.17 4.4E-06 29.8 3.2 21 3-23 367-387 (590)
445 cd03266 ABC_NatA_sodium_export 91.8 0.18 4.5E-06 29.7 3.2 21 3-23 33-53 (218)
446 cd01124 KaiC KaiC is a circadi 91.8 0.083 2.1E-06 31.8 1.5 18 5-22 3-20 (187)
447 PRK06526 transposase; Provisio 91.8 0.6 1.5E-05 26.4 5.9 37 4-40 101-143 (254)
448 PRK11607 potG putrescine trans 91.8 0.15 3.9E-06 30.1 2.9 22 3-24 47-68 (377)
449 TIGR03258 PhnT 2-aminoethylpho 91.8 0.16 4.2E-06 29.9 3.0 22 3-24 33-54 (362)
450 PRK04328 hypothetical protein; 91.7 0.12 3.1E-06 30.7 2.3 37 3-39 26-68 (250)
451 TIGR02746 TraC-F-type type-IV 91.7 0.23 6E-06 29.0 3.8 27 3-29 491-521 (900)
452 PRK13545 tagH teichoic acids e 91.7 0.18 4.6E-06 29.6 3.2 21 3-23 52-72 (549)
453 PRK11231 fecE iron-dicitrate t 91.7 0.18 4.5E-06 29.7 3.1 21 3-23 30-50 (255)
454 COG4913 Uncharacterized protei 91.7 0.12 3E-06 30.8 2.2 20 4-23 40-59 (1104)
455 cd01918 HprK_C HprK/P, the bif 91.7 0.28 7.2E-06 28.5 4.1 31 4-34 17-47 (149)
456 COG0467 RAD55 RecA-superfamily 91.6 0.29 7.3E-06 28.4 4.2 36 3-38 25-66 (260)
457 PRK10253 iron-enterobactin tra 91.6 0.16 4E-06 30.0 2.8 21 3-23 35-55 (265)
458 PRK03695 vitamin B12-transport 91.6 0.18 4.5E-06 29.7 3.0 21 3-23 25-45 (245)
459 cd03115 SRP The signal recogni 91.6 0.29 7.5E-06 28.3 4.1 31 3-33 2-38 (173)
460 cd01131 PilT Pilus retraction 91.5 0.19 4.8E-06 29.5 3.1 20 3-22 3-22 (198)
461 TIGR00955 3a01204 Pigment prec 91.5 0.17 4.4E-06 29.8 2.9 21 3-23 60-80 (671)
462 TIGR02673 FtsE cell division A 91.4 0.13 3.2E-06 30.6 2.1 56 4-61 31-91 (215)
463 PRK11432 fbpC ferric transport 91.4 0.17 4.3E-06 29.8 2.8 21 3-23 34-54 (351)
464 COG4987 CydC ABC-type transpor 91.4 0.2 5.1E-06 29.4 3.1 21 3-23 366-386 (573)
465 PRK06921 hypothetical protein; 91.4 0.29 7.3E-06 28.4 3.9 27 4-30 119-150 (265)
466 KOG4238 consensus 91.3 0.087 2.2E-06 31.7 1.2 75 3-87 52-134 (627)
467 TIGR00101 ureG urease accessor 91.3 0.088 2.2E-06 31.6 1.2 167 1-192 1-195 (199)
468 COG0488 Uup ATPase components 91.3 0.2 5.2E-06 29.3 3.1 20 3-22 31-50 (530)
469 KOG0736 consensus 91.3 0.2 5.2E-06 29.3 3.1 30 3-32 433-463 (953)
470 COG3839 MalK ABC-type sugar tr 91.3 0.21 5.4E-06 29.2 3.2 21 3-23 31-51 (338)
471 TIGR01194 cyc_pep_trnsptr cycl 91.3 0.19 4.9E-06 29.5 2.9 20 3-22 370-389 (555)
472 TIGR01978 sufC FeS assembly AT 91.3 0.18 4.6E-06 29.6 2.8 22 3-24 28-49 (248)
473 COG1100 GTPase SAR1 and relate 91.2 0.27 6.8E-06 28.6 3.6 25 2-26 6-30 (219)
474 cd03268 ABC_BcrA_bacitracin_re 91.2 0.22 5.6E-06 29.1 3.2 21 3-23 28-48 (208)
475 cd03270 ABC_UvrA_I The excisio 91.2 0.15 3.8E-06 30.2 2.3 16 3-18 23-38 (226)
476 COG0488 Uup ATPase components 91.2 0.21 5.3E-06 29.3 3.0 133 3-141 350-504 (530)
477 PRK00440 rfc replication facto 91.2 0.17 4.4E-06 29.8 2.6 20 4-23 40-59 (318)
478 COG1127 Ttg2A ABC-type transpo 91.1 0.21 5.4E-06 29.2 3.0 31 3-33 36-71 (263)
479 COG5635 Predicted NTPase (NACH 91.1 0.17 4.3E-06 29.8 2.6 21 3-23 224-244 (824)
480 cd00544 CobU Adenosylcobinamid 91.1 0.18 4.7E-06 29.6 2.7 22 3-24 1-22 (169)
481 PRK01156 chromosome segregatio 91.0 0.2 5E-06 29.4 2.8 20 3-22 25-44 (895)
482 PRK08181 transposase; Validate 91.0 0.71 1.8E-05 25.9 5.6 38 3-40 108-151 (269)
483 PRK09183 transposase/IS protei 91.0 0.7 1.8E-05 26.0 5.6 38 3-40 103-146 (258)
484 PRK11144 modC molybdate transp 91.0 0.23 5.8E-06 29.0 3.1 21 3-23 26-46 (352)
485 pfam02283 CobU Cobinamide kina 91.0 0.17 4.3E-06 29.9 2.4 20 4-23 1-20 (166)
486 COG4962 CpaF Flp pilus assembl 90.9 0.23 5.8E-06 29.0 3.0 22 3-24 175-196 (355)
487 cd03269 ABC_putative_ATPase Th 90.9 0.24 6.2E-06 28.8 3.2 21 3-23 28-48 (210)
488 pfam01695 IstB IstB-like ATP b 90.9 0.52 1.3E-05 26.8 4.8 37 3-39 49-91 (178)
489 PRK03992 proteasome-activating 90.9 0.57 1.4E-05 26.5 5.0 37 4-40 169-208 (390)
490 PRK08116 hypothetical protein; 90.8 0.38 9.8E-06 27.6 4.1 35 4-38 111-151 (262)
491 TIGR01187 potA polyamine ABC t 90.8 0.12 3.2E-06 30.7 1.6 31 6-36 1-36 (331)
492 KOG0055 consensus 90.7 0.31 7.9E-06 28.2 3.6 30 2-31 1017-1051(1228)
493 TIGR03371 cellulose_yhjQ cellu 90.7 0.42 1.1E-05 27.4 4.2 34 1-34 1-41 (246)
494 COG1855 ATPase (PilT family) [ 90.7 0.2 5.2E-06 29.3 2.6 20 4-23 266-285 (604)
495 TIGR03411 urea_trans_UrtD urea 90.7 0.26 6.7E-06 28.6 3.2 20 3-22 30-49 (242)
496 TIGR00382 clpX ATP-dependent C 90.6 0.3 7.7E-06 28.3 3.5 32 4-35 155-187 (452)
497 TIGR02640 gas_vesic_GvpN gas v 90.6 0.3 7.8E-06 28.2 3.5 27 4-30 24-51 (265)
498 PRK00349 uvrA excinuclease ABC 90.6 0.2 5E-06 29.4 2.5 17 2-18 27-43 (944)
499 TIGR00956 3a01205 Pleiotropic 90.5 0.15 3.8E-06 30.2 1.9 26 5-30 857-883 (1466)
500 PRK09601 translation-associate 90.5 0.29 7.5E-06 28.3 3.3 25 1-25 2-26 (364)
No 1
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=100.00 E-value=0 Score=372.78 Aligned_cols=194 Identities=36% Similarity=0.580 Sum_probs=184.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHH--HHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 95999888866678999999997798699904999998500--00113566531000--122211100011110012467
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHY--EAVDIIKKTFPRSI--QNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~--~~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~~~~~l 76 (199)
|++|||||+|||||||||++|+++||+|||||.++|++|.+ +++..+.+.||+.+ .+|.+||+.|++++|+|+..+
T Consensus 2 m~~IgiTG~igsGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vF~d~~~~ 81 (199)
T PRK00081 2 MLIIGLTGGIGSGKSTVANIFAELGVPVIDADKIAHQVLEPGGPALEAIVEHFGSEILLADGELDRRKLRERVFSNPEER 81 (199)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHH
T ss_conf 78999578887779999999998899399637999999970759999999985363137778756999999986798999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 88875348999999997667742024763334564325558756422789995211135688887179898999999972
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSK 156 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~ 156 (199)
++||+++||.|+..+.+++..... ..+++++|+|||||+++..+||.||+|+||+++|++|+++|+|+|.+++.+|+++
T Consensus 82 ~~Le~iiHP~V~~~i~~~~~~~~~-~~~~iv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~~~~~~~~r~~~ 160 (199)
T PRK00081 82 KWLEAILHPLIREEIQEQLQQAES-PEKYVVLDIPLLFENGLYKWFDRVLVVDVPPEIQLERLMARDGLSEEEAEAILAS 160 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHCCCHHCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999998779999999999998646-9978999431676536012078579998699999999997489989999999995
Q ss_pred CCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999789998689899879998999999999999999987
Q gi|255764477|r 157 QMNEKDKISRADYVINTEGTIEAIEKETQKMLKYILKIN 195 (199)
Q Consensus 157 Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~i~~l~ 195 (199)
|+|.+++++.|||||+||||+++|+.|+++++++|+++.
T Consensus 161 Q~~~~~k~~~aD~vI~N~~s~e~l~~qi~~il~~i~~~~ 199 (199)
T PRK00081 161 QMSREEKLARADDVIDNNGDLEDLRKQVERLLAELLKLA 199 (199)
T ss_pred CCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 899899999699999899999999999999999999619
No 2
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=100.00 E-value=0 Score=360.10 Aligned_cols=190 Identities=25% Similarity=0.381 Sum_probs=179.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHH--HHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 95999888866678999999997798699904999998500--00113566531000--122211100011110012467
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHY--EAVDIIKKTFPRSI--QNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~--~~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~~~~~l 76 (199)
|++||||||||||||||+++|+++|++|+|||.++|+++++ +++..+.+.||+.+ .||.+||++|+++||+|+..+
T Consensus 1 M~~IGLTGGIgsGKStv~~~l~~~G~~viDaD~iar~v~~pg~~~~~~iv~~FG~~il~~dG~ldR~~L~~~vF~d~~~~ 80 (394)
T PRK03333 1 MLRIGLTGGIGAGKSTVSATLAQLGAVVVDGDVLAREVVEPGTEGLAALVEAFGDDILLADGALDRPALAAKAFADDEAR 80 (394)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHCCHHHH
T ss_conf 94998306755579999999998799499857999999439868999999985989638897356999998883899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 88875348999999997667742024763334564325558756422789995211135688887179898999999972
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSK 156 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~ 156 (199)
++||.|+||.|+..+.+.+... .+..++|+|+|||||+++...||.||+|+||+++|++|+++|+|+|++++..|+++
T Consensus 81 ~~Ln~I~HP~Vr~~~~~~~~~~--~~~~vvv~DiPLL~E~~~~~~~d~VvvV~~p~e~qv~RL~~r~gls~~~A~aRIaa 158 (394)
T PRK03333 81 AVLNGIVHPLVAARRAELIAAA--PEDAVVVEDIPLLVESGMAPLFPLVVVVHADVEVRVRRLVEQRGMAEADARARIAA 158 (394)
T ss_pred HHHHHHHCHHHHHHHHHHHHHC--CCCCEEEEEECHHEECCCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9998615899999999999855--79977999400113226303699799998988999999986379899999999994
Q ss_pred CCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 999789998689899879998999999999999999
Q gi|255764477|r 157 QMNEKDKISRADYVINTEGTIEAIEKETQKMLKYIL 192 (199)
Q Consensus 157 Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~i~ 192 (199)
|+|.++|...||+||+|+||+++|..||+.+|..=+
T Consensus 159 Q~~~e~r~a~AD~VIDNsGt~~~l~~~v~~lW~~rl 194 (394)
T PRK03333 159 QASDEQRRAAADVWLDNSGTPEELVEAVRDLWADRL 194 (394)
T ss_pred CCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 799999998599999698999999999999999742
No 3
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=100.00 E-value=0 Score=349.96 Aligned_cols=175 Identities=30% Similarity=0.502 Sum_probs=165.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHH--HHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997798699904999998500--00113566531000--1222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHY--EAVDIIKKTFPRSI--QNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~--~~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
|+|||||||||||||||++|+++|++|||||.++|++|++ +++..+.+.||+.+ .+|.+||+.|++++|+|+..++
T Consensus 1 ~iIgiTG~IgsGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vF~d~~~~~ 80 (179)
T pfam01121 1 LIVGLTGGIGSGKSTVANLFADLGVPIVDADVIARQVVEPGSPALAAIVDHFGPDILLADGQLDRRALRELVFSDPEEKQ 80 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHCCHHHHH
T ss_conf 98998578647899999999987991991809999998658589999999819986077886579999999854879999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 88753489999999976677420247633345643255587564227899952111356888871798989999999729
Q gi|255764477|r 78 ILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQ 157 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q 157 (199)
+||+|+||.|+.++.+++... +.+++|+|+|||||+++.++||.+|+|.||+++|++|+++|+|+|.+++.+|+++|
T Consensus 81 ~Le~iiHP~v~~~~~~~i~~~---~~~~~v~eipLL~E~~~~~~~D~ii~V~a~~~~r~~Rl~~R~~~s~~~~~~~~~~Q 157 (179)
T pfam01121 81 WLNAILHPLIRREMFKQLAQL---TSPYVLLDVPLLFESGLTKLCHRVLVVDAPVELQVERLMQRDGLSREQVQAIIAAQ 157 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHC---CCCEEEEECCCHHCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 999862599999999999866---89969994450220676534775999987999999999980599999999999968
Q ss_pred CCHHHHHHHCCEEEECCCCHHH
Q ss_conf 9978999868989987999899
Q gi|255764477|r 158 MNEKDKISRADYVINTEGTIEA 179 (199)
Q Consensus 158 ~~~~~k~~~aD~vI~N~~s~~~ 179 (199)
+|.++|+++|||||+||||+++
T Consensus 158 ~~~~~k~~~aD~vI~Nngsi~e 179 (179)
T pfam01121 158 ASREERLALADDVLDNDSGLAE 179 (179)
T ss_pred CCHHHHHHHCCEEEECCCCCCC
T ss_conf 9989999869999989898896
No 4
>KOG3220 consensus
Probab=100.00 E-value=0 Score=338.33 Aligned_cols=194 Identities=35% Similarity=0.499 Sum_probs=186.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHH--HHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 95999888866678999999997798699904999998500--00113566531000--122211100011110012467
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHY--EAVDIIKKTFPRSI--QNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~--~~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~~~~~l 76 (199)
|+++|+||||||||||+++.|+.+|++|+|||.++|+++++ +++..+.+.||..+ .||.+||+.|+..+|+||+.+
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220 1 MLIVGLTGGIATGKSTVSQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCEECHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHCCHHHH
T ss_conf 96999405656673799999997499576278999998559980789999984840005688416899867870898899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 88875348999999997667742024763334564325558756422789995211135688887179898999999972
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSK 156 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~ 156 (199)
+.||+|+||.|+.++-+.+..+-..|++++|+|+|||||+++.++|..+|+|+||++++++|+++||+.|++++.+|..+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~Rl~s 160 (225)
T KOG3220 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENRLQS 160 (225)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99873133899999999999999668828999226888876774532589999890899999987446469999989873
Q ss_pred CCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99978999868989987999899999999999999998
Q gi|255764477|r 157 QMNEKDKISRADYVINTEGTIEAIEKETQKMLKYILKI 194 (199)
Q Consensus 157 Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~i~~l 194 (199)
|||.++|+..||+||+|||+++++++|+..++..+.+.
T Consensus 161 Qmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~~~s 198 (225)
T KOG3220 161 QMPLEKKCELADVVIDNNGSLEDLYEQVEKVLALLQKS 198 (225)
T ss_pred CCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCH
T ss_conf 29878999863164217998689999999999985331
No 5
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=100.00 E-value=0 Score=325.80 Aligned_cols=175 Identities=39% Similarity=0.607 Sum_probs=164.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHH--HHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997798699904999998500--00113566531000--12221110001111001246788
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHY--EAVDIIKKTFPRSI--QNNKVNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~--~~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~~~~~l~~ 78 (199)
+|||||||||||||||++|+++|++|||||.++|++|++ .++..+...||..+ .+|.+||+.|++++|+|+..+++
T Consensus 1 iigiTG~igSGKStv~~~l~~~g~~v~~aD~i~~~l~~~~~~~~~~i~~~fg~~~~~~~g~i~r~~L~~~vf~~~~~~~~ 80 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKK 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHCCHHHHHH
T ss_conf 98863787578999999999879909963599999886076999999987371302888867599999998669899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 87534899999999766774202476333456432555875642278999521113568888717989899999997299
Q gi|255764477|r 79 LEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQM 158 (199)
Q Consensus 79 L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q~ 158 (199)
||+++||.|+..+..++.... +.+++|+|+|||||+++.+.||.+|+|.||+++|++|+++|+|+|.+++.+++++|+
T Consensus 81 Le~iihP~v~~~~~~~~~~~~--~~~~vi~evpLL~E~~~~~~~d~ii~V~a~~~~r~~R~~~R~~~s~~~~~~~~~~Q~ 158 (179)
T cd02022 81 LEAITHPLIRKEIEEQLAEAR--KEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIASQM 158 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 985727999999999998630--356336765554205876557758999868688999999802998999999999689
Q ss_pred CHHHHHHHCCEEEECCCCHHH
Q ss_conf 978999868989987999899
Q gi|255764477|r 159 NEKDKISRADYVINTEGTIEA 179 (199)
Q Consensus 159 ~~~~k~~~aD~vI~N~~s~~~ 179 (199)
|.+++++.|||||+|++|+++
T Consensus 159 ~~~~k~~~aD~iI~N~~~~e~ 179 (179)
T cd02022 159 PLEEKRARADFVIDNSGSLEE 179 (179)
T ss_pred CHHHHHHHCCEEEECCCCCCC
T ss_conf 989999859999989998896
No 6
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=321.78 Aligned_cols=194 Identities=35% Similarity=0.528 Sum_probs=178.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHH--HHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 95999888866678999999997798699904999998500--00113566531000--122211100011110012467
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHY--EAVDIIKKTFPRSI--QNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~--~~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~~~~~l 76 (199)
|++|||||+|||||||+|++|++.|++|+|||.++|++|++ +++..+...||..+ .||.++|.+|++.+|+|+..+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~ 81 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEAR 81 (201)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 64999957887788999999997799399886999998845635789999984997656651058999999973899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 88875348999999997667742024763334564325558756422789995211135688887179898999999972
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSK 156 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~ 156 (199)
++||+|+||+|+.++........ .+ ++|+|+|||||++...+||.||+|+||+++|++|+++|++.|.+++..++.+
T Consensus 82 ~~Le~i~hPli~~~~~~~~~~~~-~~--~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~ 158 (201)
T COG0237 82 LKLEKILHPLIRAEIKVVIDGAR-SP--YVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLAS 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CC--CEEEEEHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99996655899999999999741-67--6388707888726666688899998999999999983379999999999987
Q ss_pred CCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99978999868989987999899999999999999998742
Q gi|255764477|r 157 QMNEKDKISRADYVINTEGTIEAIEKETQKMLKYILKINDS 197 (199)
Q Consensus 157 Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~i~~l~~~ 197 (199)
|+|.+++...||+||+|+++++++.+|+.++++.+......
T Consensus 159 Q~~~~ek~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~~~~~ 199 (201)
T COG0237 159 QRDLEEKLALADVVIDNDGSIENLLEQIEKLLKELLGLVLK 199 (201)
T ss_pred CCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 38999986314647664877999999999999999876431
No 7
>PRK01184 hypothetical protein; Provisional
Probab=99.98 E-value=1.7e-31 Score=217.78 Aligned_cols=170 Identities=22% Similarity=0.245 Sum_probs=126.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 95999888866678999999997798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
||+|||||+|||||||||++|+++||+++++++++++.+...+.+...+.++.... -.|++++.-++.
T Consensus 1 M~iIGlTG~iGSGKstva~i~~e~G~~vi~~~Divr~~v~~~g~~~~~~~~~~~~~---~lR~~~G~~~~a--------- 68 (183)
T PRK01184 1 MMIIIVTGMPGSGKGEFSKIARELGIPVVVMGDVIREEVKKRGLPPTDENIGKVAT---DLRKELGMDAVA--------- 68 (183)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHH---HHHHHHCCHHHH---------
T ss_conf 93999968998878999999997799399860778999998389997789999999---999871955899---------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCC-CCCE--EEEEEECCCHHHHHHHHHH----CCCCHHHHHH
Q ss_conf 53489999999976677420247633345-6432555875-6422--7899952111356888871----7989899999
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFD-TPLLFEKRKE-YLFD--AVVVVTCSFETQRERVLSR----KKHTEENFLF 152 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e-~pLL~E~~~~-~~~d--~vi~V~a~~~~r~~Rl~~R----~~~s~e~~~~ 152 (199)
...+|. ....+.+.+++| ++.+.|..+. +.++ .+|+|+||+++|++|+++| |..|.+++..
T Consensus 69 ~~~~~~-----------i~~~~~~~~vidgir~~~E~~~~~~~~~~~~li~V~A~~~~R~eRl~~R~r~~D~~s~e~f~~ 137 (183)
T PRK01184 69 IRTVPK-----------IRELGSELVVVDGVRGDAEVEYFRKEFEDFILVAIHAPPETRFERLKKRGRSDDPKTWEELRE 137 (183)
T ss_pred HHHHHH-----------HHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 999999-----------970379828981678789999999746984999998988899999984699889667999999
Q ss_pred HHHCCCC--HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9972999--7899986898998799989999999999999999
Q gi|255764477|r 153 ILSKQMN--EKDKISRADYVINTEGTIEAIEKETQKMLKYILK 193 (199)
Q Consensus 153 ~~~~Q~~--~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~i~~ 193 (199)
|..+|++ ..++.+.|||+|+|+||+++|+.||++++++|++
T Consensus 138 rd~~E~~~~i~~~i~~AD~vI~N~gsleel~~~v~~~l~~i~~ 180 (183)
T PRK01184 138 RDERELSWGIGEAIALADYMIVNDCTLEEFKARVRKLLEEILS 180 (183)
T ss_pred HHHHHHCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 9998744677789987999998799899999999999999970
No 8
>TIGR00152 TIGR00152 dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The cyrstal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases . ; GO: 0005524 ATP binding.
Probab=99.93 E-value=1.5e-25 Score=180.60 Aligned_cols=182 Identities=35% Similarity=0.582 Sum_probs=165.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC-CEEEEHHHHHHHHHHH--HHHHHHHHHHH--HCC--CCCCCCCCCHHHHHHHHHHH
Q ss_conf 99988886667899999999779-8699904999998500--00113566531--000--12221110001111001246
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKEK-IPVISSDDIVDKLYHY--EAVDIIKKTFP--RSI--QNNKVNKARLLGILQKSPAK 75 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~G-~~v~~aD~i~~~l~~~--~~~~~i~~~fg--~~i--~~~~i~r~~l~~~vf~~~~~ 75 (199)
++|+||++|+||||+++++...| ++++++|.++|+.+.+ +.+..+..+|| ..+ .+|.++|..++..+|+++..
T Consensus 1 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~l~~~~f~~~~~ 80 (197)
T TIGR00152 1 LIGLTGGIGSGKSTVANYLADKGHFPVLDADKIAHQVVEPGSPGYEKIVDHFGDIAEILNEDGELDRKALGELVFNDPEE 80 (197)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHCCHHH
T ss_conf 93224664443578999988623642003567788775046247899998722167876302403589888876057578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCEEEEEEECCCHHHHHHHHHHC-CCCHHHHHH
Q ss_conf 78887534899999999766774202476333456432555--875642278999521113568888717-989899999
Q gi|255764477|r 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK--RKEYLFDAVVVVTCSFETQRERVLSRK-KHTEENFLF 152 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~--~~~~~~d~vi~V~a~~~~r~~Rl~~R~-~~s~e~~~~ 152 (199)
+++++.++||.+...+..........+..++++++||+|+. .+..+||.++.+.+..+++.+|+..|+ +.+.+++..
T Consensus 81 ~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 160 (197)
T TIGR00152 81 LKWLNSLLHPLIREWLKKLLAELQSKGLALVLLDVPLLFENGGKLESLCDKVLVVEASPELQLERLLKRDPNLTEEEVLK 160 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHCEEEEEECCHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 89987644389999999888765302202333445455423653001102111452126789988875077866889999
Q ss_pred HHHCCCCHHHHHHHCCEEEECCCCHHHHHHHH
Q ss_conf 99729997899986898998799989999999
Q gi|255764477|r 153 ILSKQMNEKDKISRADYVINTEGTIEAIEKET 184 (199)
Q Consensus 153 ~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i 184 (199)
++..|.+..++...+|++++|+++...+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (197)
T TIGR00152 161 LLASQLPLEEKLALADDVIDNSGSPGTLADLL 192 (197)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 86210216777777766641134146788777
No 9
>PRK08356 hypothetical protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=167.49 Aligned_cols=179 Identities=23% Similarity=0.261 Sum_probs=118.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
|+|||||.+||||||||++|+++||+++++.+..++++..+..... ..++.-..+...|..|.+.- +....+.-+.
T Consensus 6 mIIgitG~~gSGK~tva~~l~~~G~~~~s~sd~lrd~~~~~~~~~~--~~~e~~~~~e~tre~l~~~~--~~LR~~~G~~ 81 (195)
T PRK08356 6 MIVGIAGKIAAGKTTVAKFLEELGFCRISCSEPLIDILTGNVSDYS--WVPEVPFKGEPTRENLIELG--RYLKEKYGED 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCC--CHHHHHHCCCCCHHHHHHHH--HHHHHHHCCH
T ss_conf 6999858998878999999998699288422789999840232000--11555514799889999999--9999986925
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEECCCHHHHHHHHHHCC------CCHHHHHHHH
Q ss_conf 34899999999766774202476333456432555875-6422789995211135688887179------8989999999
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKE-YLFDAVVVVTCSFETQRERVLSRKK------HTEENFLFIL 154 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~-~~~d~vi~V~a~~~~r~~Rl~~R~~------~s~e~~~~~~ 154 (199)
++ .+..+...+. ...+||=.+.-..|...- +..+.+|.|.||+++|++|+.+|.. .|.+++..+.
T Consensus 82 i~-------a~~~~~~i~~-~~~vVIdgiR~~~Eve~lk~~~~~lI~V~A~~~~R~eRl~~Rgr~~D~~~~s~e~fl~~d 153 (195)
T PRK08356 82 IL-------IRLAVDKLRH-CKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDRGIKSLEDLLKFD 153 (195)
T ss_pred HH-------HHHHHHHHHC-CCCEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 89-------9999999744-897899489988999999965997999967787899999976898886504299999864
Q ss_pred HCC---CCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 729---99789998689899879998999999999999999
Q gi|255764477|r 155 SKQ---MNEKDKISRADYVINTEGTIEAIEKETQKMLKYIL 192 (199)
Q Consensus 155 ~~Q---~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~i~ 192 (199)
++. +....-++.|||+|.|+||+++|+.+++++++++.
T Consensus 154 ~~e~~~~~~~~~i~~ADy~I~N~gtleel~~~i~~il~~i~ 194 (195)
T PRK08356 154 EWEEKLYQTTKLKDKADYVIVNEGTLEELRKKVEEILRELK 194 (195)
T ss_pred HHHHHHCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 88886048788998799999829989999999999999833
No 10
>PRK05480 uridine kinase; Provisional
Probab=99.65 E-value=3.2e-16 Score=122.06 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=105.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997----798699904999998500001135665310001222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
++|||+|+.||||||+|+.|++ .++.+++.|...+..-..+..+.....|.. -..++-+.|.+.+ ..++
T Consensus 7 ~iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~Yy~~~~~~~~~e~~~~nfD~---P~a~d~~ll~~~L----~~L~ 79 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVISQDSYYKDQSHLSMEERVKTNYDH---PDAFDHDLLIEHL----KALK 79 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCC---CHHHHHHHHHHHH----HHHH
T ss_conf 89999899977899999999998086875999554412473407886812368788---2676699999999----9997
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCHHHHHHHHHHC----CCCHHHHH
Q ss_conf 8875348999-999997667742024763334564325-55875642278999521113568888717----98989999
Q gi|255764477|r 78 ILEKIVHPMV-RMHEKKILHDLSCRGEKIVFFDTPLLF-EKRKEYLFDAVVVVTCSFETQRERVLSRK----KHTEENFL 151 (199)
Q Consensus 78 ~L~~iiHP~V-~~~~~~~i~~~~~~~~~~vv~e~pLL~-E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~----~~s~e~~~ 151 (199)
.-+.+-.|.- +..-.+.-........+++++|..+.+ ...+.+.||..|||+||.++|+.|.+.|| |.+.+.+.
T Consensus 80 ~G~~v~~P~Ydf~t~~r~~~~~~i~~~~iiIvEGi~~l~~~~lr~~~DlkIfid~~~d~rl~RRi~RD~~eRGr~~e~vi 159 (209)
T PRK05480 80 AGKAIEIPVYDYTEHTRSKETIHVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVI 159 (209)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECHHHCCCHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 49987567544556655786389669876999345640678788652657999667778999999978999788999999
Q ss_pred HHHHC-CCCHHHH-----HHHCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 99972-9997899-----9868989987999899999999999999
Q gi|255764477|r 152 FILSK-QMNEKDK-----ISRADYVINTEGTIEAIEKETQKMLKYI 191 (199)
Q Consensus 152 ~~~~~-Q~~~~~k-----~~~aD~vI~N~~s~~~l~~~i~~~~~~i 191 (199)
..... -.|..++ ++.||+||.+++.-+---.-+...++.+
T Consensus 160 ~q~~~~v~p~~~~yI~P~k~~ADlII~~~~~~~va~~~i~~~i~~~ 205 (209)
T PRK05480 160 NQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQL 205 (209)
T ss_pred HHHHHHHHHHHHHHCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999976576997684527424089889996459999999999999
No 11
>PTZ00301 uridine kinase; Provisional
Probab=99.58 E-value=1.3e-15 Score=118.26 Aligned_cols=183 Identities=15% Similarity=0.186 Sum_probs=112.0
Q ss_pred CEEEEEECCCCCCHHHHHHHH-HHC-------CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 959998888666789999999-977-------986999049999985000011356653100012221110001111001
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFL-KKE-------KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKS 72 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l-~~~-------G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~ 72 (199)
+.+|||+||.||||||+|+.+ +++ ...+++.|...+..-..+..+.-...|. ....++-+.+.+.+
T Consensus 3 ~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~~~NfD---hP~a~D~dLl~~~L--- 76 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYD---HPKSLEHDLLTTHL--- 76 (210)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCC---CCCCCCHHHHHHHH---
T ss_conf 889999688767899999999999876149980799836766778765886562788999---82303699999999---
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCHHHHHHHHHHC----CCC
Q ss_conf 246788875348999-999997667742024763334564325-55875642278999521113568888717----989
Q gi|255764477|r 73 PAKLEILEKIVHPMV-RMHEKKILHDLSCRGEKIVFFDTPLLF-EKRKEYLFDAVVVVTCSFETQRERVLSRK----KHT 146 (199)
Q Consensus 73 ~~~l~~L~~iiHP~V-~~~~~~~i~~~~~~~~~~vv~e~pLL~-E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~----~~s 146 (199)
..|+.-+.+--|.- +....+.-......+.+++++|.-+.| .....+.||..|||+||.++|+.|-+.|| |.+
T Consensus 77 -~~Lk~Gk~I~~P~Ydf~~h~R~~~~~~i~p~~vIIvEGi~~l~~~~lr~l~DlkIFvd~~~dirl~RRi~RDv~eRGr~ 155 (210)
T PTZ00301 77 -RELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRT 155 (210)
T ss_pred -HHHHCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEHHCCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf -9997699634466555677667970896688569997104307898997742457734872378899888778875889
Q ss_pred HHHHHHHHHCC-CCHHHH-----HHHCCEEEE----CCCCHHHHHHHHHHHHHH
Q ss_conf 89999999729-997899-----986898998----799989999999999999
Q gi|255764477|r 147 EENFLFILSKQ-MNEKDK-----ISRADYVIN----TEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 147 ~e~~~~~~~~Q-~~~~~k-----~~~aD~vI~----N~~s~~~l~~~i~~~~~~ 190 (199)
.+.+....... .|..++ +++||.||. |...++-+..+++..++.
T Consensus 156 ~e~Vi~qy~~~V~P~~~~fI~P~k~~ADiIIp~~~~n~va~~~i~~~i~~~l~~ 209 (210)
T PTZ00301 156 FESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDLEN 209 (210)
T ss_pred HHHHHHHHHHHHCCCHHHHCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999662305887680516336189789998631999999999999851
No 12
>PRK08233 hypothetical protein; Provisional
Probab=99.56 E-value=1.6e-14 Score=111.50 Aligned_cols=159 Identities=17% Similarity=0.170 Sum_probs=96.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-C-CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-7-9869990499999850000113566531000122211100011110012467888
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-E-KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~-G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L 79 (199)
++|||+||.||||||+|+.+.+ + +..++.-|.-.... .- ..+.....+ +.+ |+
T Consensus 4 ~IIgIaGgSgSGKTtla~~l~~~l~~~~~~~~D~y~~~~----~~----~~~~~~~~~-~~~--------~d-------- 58 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN----CP----EDICKWIDD-GAN--------YS-------- 58 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC----CH----HHHHHHHCC-CCC--------CC--------
T ss_conf 899996888678999999999974677589966655546----87----889987406-778--------66--------
Q ss_pred HHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCHHHHHHHHHHC-----CCCHHHH-H
Q ss_conf 75348-9999999976677420247633345643255-5875642278999521113568888717-----9898999-9
Q gi|255764477|r 80 EKIVH-PMVRMHEKKILHDLSCRGEKIVFFDTPLLFE-KRKEYLFDAVVVVTCSFETQRERVLSRK-----KHTEENF-L 151 (199)
Q Consensus 80 ~~iiH-P~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E-~~~~~~~d~vi~V~a~~~~r~~Rl~~R~-----~~s~e~~-~ 151 (199)
.+-+ +++ ..... ........++++|.||.+. ..+.+.+|..|||+||.++|+.|.+.|| |-+.+.. .
T Consensus 59 -~~d~~~l~-~~l~~---l~~~~~~d~iIvEgil~l~~~~lr~l~D~kIfVdtp~Dirl~RRi~RDi~Er~gr~i~svl~ 133 (182)
T PRK08233 59 -EWVLTPLI-KDIQE---LIAKSNVDYIIVDYPFAYLNSEMRQYIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLK 133 (182)
T ss_pred -HHHHHHHH-HHHHH---HHCCCCCCEEEEEEEHHHCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf -66699999-99999---85599872899964436268989977187899728689999998888877761887899999
Q ss_pred HHHHCCCCHHHH-----HHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 999729997899-----986898998799989999999999999
Q gi|255764477|r 152 FILSKQMNEKDK-----ISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 152 ~~~~~Q~~~~~k-----~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
+-++.=.|..+. +..||+||+|..+++...+++++.+.+
T Consensus 134 qY~~~VrPm~~~fvePsk~~ADiIId~~~aid~i~~~i~~~l~~ 177 (182)
T PRK08233 134 HYLNYARPLYLEALDTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred HHHHHHHHHHHHHHCHHHHCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99998788999985700321968985860799999999999974
No 13
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.55 E-value=2e-15 Score=117.09 Aligned_cols=167 Identities=22% Similarity=0.293 Sum_probs=97.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC----CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998888666789999999977----986999049999985000011356653100012221110001111001246788
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE----KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~----G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~ 78 (199)
+|||+|+.||||||+|+.|++. ++.+++.|..-+..-..+........|+. ....+-..|.+.+ ..++.
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~yy~~~~~~~~~~~~~~~fd~---p~a~d~~~l~~~L----~~L~~ 73 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDH---PDAFDFDLLISHL----QDLKN 73 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCC---CCHHHHHHHHHHH----HHHHC
T ss_conf 9898899988599999999998099985899788888798604387843678789---2264499999999----99864
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCHHHHHHHHHHC----CCCHHHHHH
Q ss_conf 875348999-999997667742024763334564325-55875642278999521113568888717----989899999
Q gi|255764477|r 79 LEKIVHPMV-RMHEKKILHDLSCRGEKIVFFDTPLLF-EKRKEYLFDAVVVVTCSFETQRERVLSRK----KHTEENFLF 152 (199)
Q Consensus 79 L~~iiHP~V-~~~~~~~i~~~~~~~~~~vv~e~pLL~-E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~----~~s~e~~~~ 152 (199)
-+.+-.|.- +..-.+.-+.......+++++|..++| ...+.+.||..|+|+||.++|+.|.+.|| |.+.+.+..
T Consensus 74 g~~i~~p~Yd~~t~~r~~~~~~i~~~~iiIvEGi~~l~~~~lr~~~D~kIfid~~~d~rl~Rri~RD~~eRg~~~~~v~~ 153 (198)
T cd02023 74 GKSVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVIN 153 (198)
T ss_pred CCCCCCCCEECCCCCCCCCCEEECCCCEEEEECHHHCCCHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 89761231003457546772796588659982534306888886740237861789999999998769885899999999
Q ss_pred HHHCC-CCHHHH-----HHHCCEEEECCCC
Q ss_conf 99729-997899-----9868989987999
Q gi|255764477|r 153 ILSKQ-MNEKDK-----ISRADYVINTEGT 176 (199)
Q Consensus 153 ~~~~Q-~~~~~k-----~~~aD~vI~N~~s 176 (199)
..... .|..++ ++.||.||.|+..
T Consensus 154 ~~~~~v~p~~~~~i~P~k~~ADlIi~~~~~ 183 (198)
T cd02023 154 QYLKFVKPMHEQFIEPTKRYADVIIPRGGD 183 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHCCCEEECCCCC
T ss_conf 999860787998652415147389789998
No 14
>PRK04182 cytidylate kinase; Provisional
Probab=99.49 E-value=2.8e-12 Score=97.37 Aligned_cols=158 Identities=22% Similarity=0.326 Sum_probs=97.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
|+|.|+|..||||||+++.|++ +|++++|.+.+.+++-...+... ..|.+... .
T Consensus 1 m~ItI~g~~GSGk~tIak~LA~~lg~~~~d~g~i~r~~a~~~g~~~--~~~~~~~e--------------~--------- 55 (178)
T PRK04182 1 MRITISGPPGSGKTTVARLLAEKLGLKLVSAGDIFRELARERGMSL--EEFNKYAE--------------E--------- 55 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHHCCCCH--HHHHHHHH--------------C---------
T ss_conf 9899958998887999999999959938721299999999859999--99999985--------------1---------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 5348999999997667742024763334564---3255587564227899952111356888871798989999999729
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFDTP---LLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQ 157 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~p---LL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q 157 (199)
+|.+...+.+.+.+....+ + +|++.- .++. +.-+.-|++.||.+.|.+|+++|.+.+.+++...+..-
T Consensus 56 ---~~~id~~~~~~~~~~a~~~-~-~Vi~GR~~~~il~----~~~~l~ifl~A~~e~R~~Ri~~r~~~~~~~a~~~i~~r 126 (178)
T PRK04182 56 ---DPEIDKEIDRRQLELAKRG-N-VVLEGRLAGWIVK----NYADLKIYLKAPLEVRAKRIAEREGISVEEALEETIER 126 (178)
T ss_pred ---CHHHHHHHHHHHHHHHHCC-C-EEEECCCCCEEEC----CCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf ---9268999999999998539-9-8998388876972----79877999989999999999973299999999999998
Q ss_pred -CCHHHH-----------HHHCCEEEECCC-CHHHHHHHHHHHHHHHHH
Q ss_conf -997899-----------986898998799-989999999999999999
Q gi|255764477|r 158 -MNEKDK-----------ISRADYVINTEG-TIEAIEKETQKMLKYILK 193 (199)
Q Consensus 158 -~~~~~k-----------~~~aD~vI~N~~-s~~~l~~~i~~~~~~i~~ 193 (199)
.....+ ....|.+|+++. ++++.-..|..++++++.
T Consensus 127 d~~~~~r~~~~y~~~~~d~~~ydl~Idts~l~~d~vv~~I~~~i~k~l~ 175 (178)
T PRK04182 127 EESEAKRYLEYYGIDIDDLSIYDLVINTSKWSPEEVFEIILAAIDKLLL 175 (178)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999998608997753107489989999999999999999999984
No 15
>PRK07429 phosphoribulokinase; Provisional
Probab=99.45 E-value=4.6e-14 Score=108.58 Aligned_cols=161 Identities=24% Similarity=0.251 Sum_probs=99.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CC---CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-79---8699904999998500001135665310001222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EK---IPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G---~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
++|||+||.||||||+++.+.+ +| +.+++.|..-+ +..+.. ....+.. ......+-..+.+ +=..|+
T Consensus 9 ~IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk--~dr~~r--~~~~~t~-lhP~And~dLl~e----~L~~Lk 79 (331)
T PRK07429 9 VIIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDDYHS--LDRKQR--KEIGITA-LDPRANNFDLMYE----QLKALK 79 (331)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHH--HHCCCCC-CCCCHHCHHHHHH----HHHHHH
T ss_conf 899985788778999999999983888779994786777--887889--8718987-8964005999999----999998
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCHHHHHHHHHHC----CCCHHHHH
Q ss_conf 887534899999999-7667742024763334564325-55875642278999521113568888717----98989999
Q gi|255764477|r 78 ILEKIVHPMVRMHEK-KILHDLSCRGEKIVFFDTPLLF-EKRKEYLFDAVVVVTCSFETQRERVLSRK----KHTEENFL 151 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~-~~i~~~~~~~~~~vv~e~pLL~-E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~----~~s~e~~~ 151 (199)
.-+.|--|. +.... .+-....-.+.+++|+|.-+.| .....+.||..|||++|.++|+.|-++|| |.|.|++.
T Consensus 80 ~Gk~I~~Pv-Ydh~tg~~~~~~~I~P~~vIIvEGLh~L~~~~lR~l~DlKIFVD~d~diR~~rRI~RDv~ERG~s~E~Vl 158 (331)
T PRK07429 80 TGQPILKPI-YNHETGKIDPPEYIKPNKIVVVEGLHPLYDERVRDLYDFKVYLDPPDEVKIAWKIKRDMAERGHTYEDVL 158 (331)
T ss_pred CCCCCCCCC-CCCCCCCCCCCEEECCCCEEEEECCHHCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 599725652-3564787788666068867999161212879899754937996487889999988877866189999999
Q ss_pred HHHHCCCCHHHH-----HHHCCEEEE
Q ss_conf 999729997899-----986898998
Q gi|255764477|r 152 FILSKQMNEKDK-----ISRADYVIN 172 (199)
Q Consensus 152 ~~~~~Q~~~~~k-----~~~aD~vI~ 172 (199)
.=++...|..++ +++||.||.
T Consensus 159 ~qi~~RkpD~~~yI~PQk~~ADiVI~ 184 (331)
T PRK07429 159 AEIEKREPDFEAYIDPQRQYADVVIQ 184 (331)
T ss_pred HHHHHCCHHHHHHCCCCHHCCCEEEE
T ss_conf 99985117899766804112728999
No 16
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=99.44 E-value=4.2e-13 Score=102.56 Aligned_cols=141 Identities=24% Similarity=0.384 Sum_probs=90.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
|+|.|.|.|||||||||+.+++ +|++.+||.++ |++-+..+........-+ .+..|||+
T Consensus 1 M~I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~i-RelA~~~Gldl~E~~~ae--e~~eIDk~----------------- 60 (173)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDI-RELAEKMGLDLAESKYAE--ENPEIDKK----------------- 60 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCHH-HHHHHHCCCCHHHHHHHC--CCCCCCHH-----------------
T ss_conf 9788735896864789999998639831202007-889864298877734430--58631167-----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----CCEEEEEEECCCHHHHHHHHHHCCCCHHHHH-HHH
Q ss_conf 5348999999997667742024763334564325558756-----4227899952111356888871798989999-999
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEY-----LFDAVVVVTCSFETQRERVLSRKKHTEENFL-FIL 154 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~-----~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~-~~~ 154 (199)
+.+.+.+.-. +.+=+|+|.-| ++|-. .-|..|+..||.++|-.|+-+|++.+...+. +..
T Consensus 61 ----------iD~~~~E~A~-~~~nvvlEsrl---agW~~~~nG~yaD~~iyL~A~levRA~RIA~Re~k~~~~A~~~~~ 126 (173)
T TIGR02173 61 ----------IDRRIREIAE-KEKNVVLESRL---AGWILKKNGEYADVKIYLKAPLEVRARRIAKRENKDLTVALKEII 126 (173)
T ss_pred ----------HHHHHHHHHC-CCCCEEEEEHH---HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf ----------5378855430-48966885205---433115788967567886088333243321136889899999999
Q ss_pred HCCCCHHHHHHHCCEEEE-CCCCH
Q ss_conf 729997899986898998-79998
Q gi|255764477|r 155 SKQMNEKDKISRADYVIN-TEGTI 177 (199)
Q Consensus 155 ~~Q~~~~~k~~~aD~vI~-N~~s~ 177 (199)
.+--+.. |+...=|=|+ ||-|+
T Consensus 127 ~REe~e~-rRy~~iYgIDidDlsi 149 (173)
T TIGR02173 127 EREESEK-RRYKEIYGIDIDDLSI 149 (173)
T ss_pred HHHHHHH-HHHHHHCCCCCCCCEE
T ss_conf 9887622-3456652502343222
No 17
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.42 E-value=4.4e-13 Score=102.43 Aligned_cols=182 Identities=20% Similarity=0.247 Sum_probs=104.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CC---CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-79---8699904999998500001135665310001222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EK---IPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G---~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
++|||+|+.||||||+|+-+.+ +| ..+++-|...+..-..+..+...-.|.. -...|.+.+.+.+ ..++
T Consensus 9 iiIgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~---p~A~D~dLl~~~L----~~L~ 81 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDH---PEAFDLDLLIEHL----KDLK 81 (218)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCHHHCCCCCCCC---HHHHCHHHHHHHH----HHHH
T ss_conf 99998679877889999999998286752476522320253016675537857448---2343689999999----9997
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCHHHHHHHHHHC----CCCHHHHH
Q ss_conf 8875348999-9999976677420247633345643255-5875642278999521113568888717----98989999
Q gi|255764477|r 78 ILEKIVHPMV-RMHEKKILHDLSCRGEKIVFFDTPLLFE-KRKEYLFDAVVVVTCSFETQRERVLSRK----KHTEENFL 151 (199)
Q Consensus 78 ~L~~iiHP~V-~~~~~~~i~~~~~~~~~~vv~e~pLL~E-~~~~~~~d~vi~V~a~~~~r~~Rl~~R~----~~s~e~~~ 151 (199)
.-..+.-|.- +....+..+...-.+.+++++|.-++++ ..+.+.+|..|+|++|.++|+.|...|| |.+.+...
T Consensus 82 ~g~~v~~P~yd~~~~~r~~~~i~~~p~~VIIvEGi~~l~d~~lr~~~d~kIfvdt~~D~RliRri~RD~~~rg~~~~~vi 161 (218)
T COG0572 82 QGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVI 161 (218)
T ss_pred CCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 69922456420313632577331389728999423001507677660678999778327889988877988199989999
Q ss_pred -HHHHCCCCHHHH-----HHHCCEEEECC----CCHHHHHHHHHHHHHH
Q ss_conf -999729997899-----98689899879----9989999999999999
Q gi|255764477|r 152 -FILSKQMNEKDK-----ISRADYVINTE----GTIEAIEKETQKMLKY 190 (199)
Q Consensus 152 -~~~~~Q~~~~~k-----~~~aD~vI~N~----~s~~~l~~~i~~~~~~ 190 (199)
+..+.=.|..+. +++||.+|.-. -....+..++..++..
T Consensus 162 ~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~~~~ 210 (218)
T COG0572 162 EQYVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASSLSE 210 (218)
T ss_pred HHHHHHHCHHHHHCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHH
T ss_conf 9999861741460157451116078515886444226779999998643
No 18
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=99.37 E-value=4.7e-13 Score=102.28 Aligned_cols=162 Identities=20% Similarity=0.205 Sum_probs=92.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CC---CE--------EEEHHHHHHHHHHHHHHHHHHHHHHHCC-C--CCCCCCCCHHH
Q ss_conf 999888866678999999997-79---86--------9990499999850000113566531000-1--22211100011
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EK---IP--------VISSDDIVDKLYHYEAVDIIKKTFPRSI-Q--NNKVNKARLLG 67 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G---~~--------v~~aD~i~~~l~~~~~~~~i~~~fg~~i-~--~~~i~r~~l~~ 67 (199)
+|||+|+.||||||+|+.|++ +| .. +++.|...+..- ...-.......+ . -..++-..|.+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~----~~~~~~~~~~~~~~d~P~a~d~~ll~~ 76 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLH----MEDRKRAGNNHYSFFSPEANDFDLLYE 76 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCC----HHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9899899857199999999999660587764124317986041024437----576765145788978966235999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCEEEEEEECCCHHHHHHHHHHC--
Q ss_conf 11001246788875348999-99999766774202476333456432-555875642278999521113568888717--
Q gi|255764477|r 68 ILQKSPAKLEILEKIVHPMV-RMHEKKILHDLSCRGEKIVFFDTPLL-FEKRKEYLFDAVVVVTCSFETQRERVLSRK-- 143 (199)
Q Consensus 68 ~vf~~~~~l~~L~~iiHP~V-~~~~~~~i~~~~~~~~~~vv~e~pLL-~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~-- 143 (199)
.+ ..++.-+.+-.|.- +....+.-........+++++|.-+. +-....+.||.-|+|++|.++|+.|-+.||
T Consensus 77 ~l----~~Lk~g~~i~~P~Ydf~~~~r~~~~~~i~p~~viIvEGi~~l~~~~ir~l~D~kIfid~~~d~rl~RRi~RD~~ 152 (196)
T pfam00485 77 QF----KELKEGGSGDKPIYNHVTGEADPWPELIEGADILFIEGLHGLYDERVAQLLDLKIYVDPDIDLELIQKIQRDMA 152 (196)
T ss_pred HH----HHHHCCCCEEEEEEECCCCCCCCCCEECCCCCEEEEECHHHCCCHHHHHHHCEEEEEECCCCHHHHHHHHHCHH
T ss_conf 99----99708994576567513453367736617885699943333032778876384799726801999999873457
Q ss_pred --CCCHHHHHHHHHCCCCHHHH-----HHHCCEEEE
Q ss_conf --98989999999729997899-----986898998
Q gi|255764477|r 144 --KHTEENFLFILSKQMNEKDK-----ISRADYVIN 172 (199)
Q Consensus 144 --~~s~e~~~~~~~~Q~~~~~k-----~~~aD~vI~ 172 (199)
|.+.+.+......-.|..++ ++.||.||.
T Consensus 153 eRgrs~~~v~~q~~~v~p~~~~fI~P~k~~ADliI~ 188 (196)
T pfam00485 153 ERGHSLEGVTDSIERRKPDYVNYICPQFSYADLIIQ 188 (196)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEC
T ss_conf 519999999999999725389647478522988970
No 19
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.35 E-value=6.4e-13 Score=101.40 Aligned_cols=162 Identities=19% Similarity=0.349 Sum_probs=88.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCEEEEHHHHHHHHHHHHHH---HHH-HHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9998888666789999999977--------98699904999998500001---135-66531000122211100011110
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE--------KIPVISSDDIVDKLYHYEAV---DII-KKTFPRSIQNNKVNKARLLGILQ 70 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~--------G~~v~~aD~i~~~l~~~~~~---~~i-~~~fg~~i~~~~i~r~~l~~~vf 70 (199)
+|||+|+.||||||+|+.+++. .+.+++.|... |..... ... ..-||+.+ |-+.|.+.+
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~---~~~~~l~~~~~~~~~g~P~af-----D~~ll~~~L- 71 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL---YPNKELIERGLMDRKGFPESY-----DMEALLKFL- 71 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC---CCCHHHHHHHHHHHCCCCHHC-----CHHHHHHHH-
T ss_conf 98978899877999999999986002699948999787875---785228886466516993021-----599999999-
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH-H-HHCCCCCCCCCCCCCCCCC-C-----CCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 012467888-75348999999997667-7-4202476333456432555-8-----756422789995211135688887
Q gi|255764477|r 71 KSPAKLEIL-EKIVHPMVRMHEKKILH-D-LSCRGEKIVFFDTPLLFEK-R-----KEYLFDAVVVVTCSFETQRERVLS 141 (199)
Q Consensus 71 ~~~~~l~~L-~~iiHP~V~~~~~~~i~-~-~~~~~~~~vv~e~pLL~E~-~-----~~~~~d~vi~V~a~~~~r~~Rl~~ 141 (199)
..++.- +.+-.|.=-........ . ....+.+++++|.-+++.. . ..++||..|||+||.+++.+|+.+
T Consensus 72 ---~~Lk~G~~~V~~PvYd~~~~~r~~~~~~~i~~~~IiIvEGi~~L~~~~~~~~~i~dl~D~kIfvD~d~d~~~~r~i~ 148 (220)
T cd02025 72 ---KDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIK 148 (220)
T ss_pred ---HHHHCCCCCEEEEECCCHHCCCCCCCEEEECCCCEEEEEEEEEECCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHH
T ss_conf ---99975998534010121212578984287269986998323220165211145675465789807998999999999
Q ss_pred HC-------C------------CCHHHHHHHHHCCCCH-----H-H----HHHHCCEEEECCCC
Q ss_conf 17-------9------------8989999999729997-----8-9----99868989987999
Q gi|255764477|r 142 RK-------K------------HTEENFLFILSKQMNE-----K-D----KISRADYVINTEGT 176 (199)
Q Consensus 142 R~-------~------------~s~e~~~~~~~~Q~~~-----~-~----k~~~aD~vI~N~~s 176 (199)
|. + ++..+.......||.. . + -+++||.||...++
T Consensus 149 R~~~~~~~~~r~~~s~~~qy~~~~~~~~~~~~~~~w~~~~~p~~~~~I~Ptk~~AD~Iip~g~~ 212 (220)
T cd02025 149 RFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGAD 212 (220)
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHCCEEEEECCCC
T ss_conf 9999998741488998888750478999999999999700341887571544214699740899
No 20
>PRK07667 uridine kinase; Provisional
Probab=99.35 E-value=3e-13 Score=103.49 Aligned_cols=163 Identities=21% Similarity=0.235 Sum_probs=94.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCE--EEEHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHH
Q ss_conf 5999888866678999999997----7986--9990499999850000113566531000--122211100011110012
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIP--VISSDDIVDKLYHYEAVDIIKKTFPRSI--QNNKVNKARLLGILQKSP 73 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~--v~~aD~i~~~l~~~~~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~~~ 73 (199)
++|||.|+.||||||+|+-|.+ .|.+ ++..|+....--. -+. ..+++.. .....|-..|...++.
T Consensus 15 ~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~~~~--r~~---~~~~~~~~~~~~~~D~~~L~~~ll~-- 87 (190)
T PRK07667 15 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVERNK--RYH---TGFEEWYEYYYLQWDIEWLRQKFFR-- 87 (190)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH--HHC---CCCCCHHHCCCCCCCHHHHHHHHHH--
T ss_conf 999977989788999999999998665983799966624265888--730---5985400125431259999999999--
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 46788875348999-99999766774202476333456432555875642278999521113568888717989899999
Q gi|255764477|r 74 AKLEILEKIVHPMV-RMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLF 152 (199)
Q Consensus 74 ~~l~~L~~iiHP~V-~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~ 152 (199)
.++.-..+-.|.- +......-........+++|+|.-+|+...+.+.||..|+|+||.++|+.|.++|++-+.+.+.+
T Consensus 88 -~Lk~g~~i~~p~Yd~~t~~~~~~~~~v~p~~VIIvEGI~l~~~elrd~~D~kIfVD~~~d~r~~R~~~~~~~~l~~~~~ 166 (190)
T PRK07667 88 -KLQNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQKNLSKFEN 166 (190)
T ss_pred -HHCCCCCEEEEEECCCCCCCCCCEEECCCCCEEEEECHHHCCHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -8438997675246023366776427669998899950443888789756879999789999988730202346899999
Q ss_pred HH-HCCC---CHHHHHHHCCEEEE
Q ss_conf 99-7299---97899986898998
Q gi|255764477|r 153 IL-SKQM---NEKDKISRADYVIN 172 (199)
Q Consensus 153 ~~-~~Q~---~~~~k~~~aD~vI~ 172 (199)
+- ..|- ....=.++||+||.
T Consensus 167 ry~~a~~~y~~~~~P~~~AD~Ii~ 190 (190)
T PRK07667 167 RYWKAEDYYLETESPKDRADLVIK 190 (190)
T ss_pred HHHHHHHHHHHHCCCHHHCCEEEC
T ss_conf 999999999974590752988859
No 21
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=3.4e-11 Score=90.62 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=97.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
|+|.|.|.+||||||||+.+++ +|+++++|..+-|++-..-+... ..|.+.-. .
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl--~ef~~~AE--------------~--------- 55 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSL--EEFSRYAE--------------E--------- 55 (179)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCH--HHHHHHHH--------------C---------
T ss_conf 9799617999970279999999829715621279999999839999--99999875--------------1---------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHH-CC
Q ss_conf 5348999999997667742024763334564325558756--42278999521113568888717989899999997-29
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEY--LFDAVVVVTCSFETQRERVLSRKKHTEENFLFILS-KQ 157 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~--~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~-~Q 157 (199)
||.+-..+.+....... ..-+|+|.-| ++|.- .-|..|++.||.++|.+|+.+|+|.+.+++...+. +.
T Consensus 56 ---~p~iD~~iD~rq~e~a~--~~nvVlegrL---A~Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE 127 (179)
T COG1102 56 ---DPEIDKEIDRRQKELAK--EGNVVLEGRL---AGWIVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVERE 127 (179)
T ss_pred ---CCHHHHHHHHHHHHHHH--CCCEEEHHHH---HHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf ---92166998899999987--2895870045---788733565468888575999999999860898999999999988
Q ss_pred CCHHHH-----------HHHCCEEEECCC-CHHHHHHHHHHHHHH
Q ss_conf 997899-----------986898998799-989999999999999
Q gi|255764477|r 158 MNEKDK-----------ISRADYVINTEG-TIEAIEKETQKMLKY 190 (199)
Q Consensus 158 ~~~~~k-----------~~~aD~vI~N~~-s~~~l~~~i~~~~~~ 190 (199)
+++..+ ....|.||+.+. +.+....-+...+..
T Consensus 128 ~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~ 172 (179)
T COG1102 128 ESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDA 172 (179)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999999999858787666367788753667888999999999874
No 22
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=99.31 E-value=4.7e-13 Score=102.24 Aligned_cols=180 Identities=22% Similarity=0.267 Sum_probs=112.2
Q ss_pred EEEEEECCCCCCH----HHHHHHHHH-CC-----CEEEEHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 5999888866678----999999997-79-----8699904999998--5000011356653100012221110001111
Q gi|255764477|r 2 LIIGLTGSIGTGK----TTVAEFLKK-EK-----IPVISSDDIVDKL--YHYEAVDIIKKTFPRSIQNNKVNKARLLGIL 69 (199)
Q Consensus 2 ~iIgitG~igSGK----Stv~~~l~~-~G-----~~v~~aD~i~~~l--~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~v 69 (199)
.+|||+||.|||| |||++.+.+ .+ +.+++-|...+.. -..+..+...-.|. .-..+|.+.|.+++
T Consensus 11 ~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfD---HP~AfD~~Ll~~Hl 87 (220)
T TIGR00235 11 IIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFD---HPDAFDNDLLYEHL 87 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC---CCHHCCHHHHHHHH
T ss_conf 799701766101567899999999998314001457750324458898873124643125889---80030379999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHCCCCCCCCCCC-CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC---
Q ss_conf 00124678887534899-9999997-66774202476333456-432555875642278999521113568888717---
Q gi|255764477|r 70 QKSPAKLEILEKIVHPM-VRMHEKK-ILHDLSCRGEKIVFFDT-PLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK--- 143 (199)
Q Consensus 70 f~~~~~l~~L~~iiHP~-V~~~~~~-~i~~~~~~~~~~vv~e~-pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~--- 143 (199)
.+|+.-..+=-|. =+...++ .-+...-.+.++||+|. =+|++.++.+.+|.-|||+||.++|+-|.++||
T Consensus 88 ----~nLk~g~~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D~Rl~~L~dlkifvDt~~D~rliRRl~RD~~~ 163 (220)
T TIGR00235 88 ----KNLKNGSAIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTDERLRDLMDLKIFVDTPLDIRLIRRLERDIEE 163 (220)
T ss_pred ----HHHHCCCEECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf ----9984688022454254100202556268735068997061888879998871823677468303256565655754
Q ss_pred -CCCHH-HHHHHHHCCCCHHHH-----HHHCCEEEE----CCCCHHHHHHHHHHHH
Q ss_conf -98989-999999729997899-----986898998----7999899999999999
Q gi|255764477|r 144 -KHTEE-NFLFILSKQMNEKDK-----ISRADYVIN----TEGTIEAIEKETQKML 188 (199)
Q Consensus 144 -~~s~e-~~~~~~~~Q~~~~~k-----~~~aD~vI~----N~~s~~~l~~~i~~~~ 188 (199)
|-+-+ -+++..+.=-|...+ +++||.||. |.-++.-|..+++.++
T Consensus 164 RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A~~~l~~~I~~l~ 219 (220)
T TIGR00235 164 RGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVAINVLKTKIKSLL 219 (220)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 28978899999998534621014550101466762589881688999999999860
No 23
>PRK06696 uridine kinase; Validated
Probab=99.29 E-value=1.1e-11 Score=93.71 Aligned_cols=165 Identities=24% Similarity=0.286 Sum_probs=93.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCEEE--EHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 5999888866678999999997----798699--90499999---85000011356653100012221110001111001
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIPVI--SSDDIVDK---LYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKS 72 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~v~--~aD~i~~~---l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~ 72 (199)
++|||.|..||||||+|+-|.+ .|.+|+ ..|..-+. .+... ... +.....+..+-..|...++.
T Consensus 27 l~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r~~~g-~~~-----~~~~~~d~~D~~~l~~~ll~- 99 (227)
T PRK06696 27 LRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIRYRRG-RES-----ARGYYEDAYDYTAFRELLLK- 99 (227)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHHHH-
T ss_conf 89997789987879999999999974699489971544347377776516-677-----44347541058999999986-
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHH-HH--HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCC----
Q ss_conf 246788875-3489999999976-67--742024763334564325558756422789995211135688887179----
Q gi|255764477|r 73 PAKLEILEK-IVHPMVRMHEKKI-LH--DLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKK---- 144 (199)
Q Consensus 73 ~~~l~~L~~-iiHP~V~~~~~~~-i~--~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~---- 144 (199)
| +..-.+ .+-|..+...... .. ........++|+|...|+--.+...||..|+|++|.+++.+|..+|+.
T Consensus 100 p--L~~~~~~~~~~~~~D~~td~~~~~~~~~~p~~~VlIveG~~ll~~elr~~~D~~v~ld~~~~~~~~R~~~Rd~~~~g 177 (227)
T PRK06696 100 P--LGPNGDRQYRTASHDLKTDIPVHNEPLMAAPNAVLIVDGTFLLRKELRDLWDYKIFLDTDFEESRRRGAKRDTEAFG 177 (227)
T ss_pred H--HCCCCCCEEEECCCCCCCCCCCCCCCEECCCCCEEEEECHHHCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 6--31589805841124633575456871646998089992556466557730748999979999998876653254416
Q ss_pred CCHHHHHHHHHCCCCHHHH-------HHHCCEEEECCC
Q ss_conf 8989999999729997899-------986898998799
Q gi|255764477|r 145 HTEENFLFILSKQMNEKDK-------ISRADYVINTEG 175 (199)
Q Consensus 145 ~s~e~~~~~~~~Q~~~~~k-------~~~aD~vI~N~~ 175 (199)
.+.+...+..++-+|.... +..||.||+|+.
T Consensus 178 ~~~~~~~~~~~ry~pa~~~Y~~~~~P~~~Advvv~n~d 215 (227)
T PRK06696 178 SYEEAEKMYLERYHPACKLYIDEHNPKECADVVFDNSD 215 (227)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCC
T ss_conf 83789999998763899998641683783859997999
No 24
>PRK03839 putative kinase; Provisional
Probab=99.28 E-value=1.5e-10 Score=86.55 Aligned_cols=144 Identities=20% Similarity=0.251 Sum_probs=88.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC-CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977-986999049999985000011356653100012-2211100011110012467888
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQN-NKVNKARLLGILQKSPAKLEIL 79 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~-G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~-~~i~r~~l~~~vf~~~~~l~~L 79 (199)
|+|+|||.||+||||+|+.|+++ |+.+++.-+++.+- .+ +....+ -.++- .+|
T Consensus 1 M~I~ITGTPGtGKTTva~~La~~lg~~~i~v~~la~~~---~~--------~~~~d~~~~iD~--------------d~l 55 (180)
T PRK03839 1 MIIAITGTPGVGKTTISKLLAEKLGYEYVNLRDFALEK---GI--------GEEKDDELEIDV--------------DEL 55 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHC---CC--------CCCCCCCCCCCH--------------HHH
T ss_conf 98999789999989999999997698798799999983---99--------867677504659--------------999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCC-
Q ss_conf 7534899999999766774202476333456432555875642278999521113568888717989899999997299-
Q gi|255764477|r 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQM- 158 (199)
Q Consensus 80 ~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q~- 158 (199)
...+.+. .. + +-+++|.-+ +.+.. .|.||+..|++.+-.+|+.+| |++.+.+..=..+.+
T Consensus 56 ~~~~~~~-----------~~--~-~~~ivd~H~---~h~~p-~D~VIVLR~~P~iL~~RL~~R-gYs~~KI~ENveaEil 116 (180)
T PRK03839 56 AYFVEEE-----------FK--G-KNVVLDGHL---SHLMP-ADLVIVLRAHPKLIAERLKER-GYSKKKIGENVEAELV 116 (180)
T ss_pred HHHHHHH-----------HC--C-CCEEEEEEC---CCCCC-CCEEEEEECCHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_conf 9999987-----------34--8-988998643---14636-877999978869999999976-9998999999999999
Q ss_pred --CHHHHHHH--CCEEEECC-CCHHHHHHHHHHHHH
Q ss_conf --97899986--89899879-998999999999999
Q gi|255764477|r 159 --NEKDKISR--ADYVINTE-GTIEAIEKETQKMLK 189 (199)
Q Consensus 159 --~~~~k~~~--aD~vI~N~-~s~~~l~~~i~~~~~ 189 (199)
...+-... -.|.|+.. .|+++...++..+++
T Consensus 117 ~vil~Ea~e~~~~~~eidtt~~~pe~v~~~I~~~i~ 152 (180)
T PRK03839 117 DVILIEALEEHENVIEVDTTNKTPEEVVEEILNLIK 152 (180)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999999998439889998999999999999999995
No 25
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.27 E-value=3.9e-12 Score=96.52 Aligned_cols=159 Identities=24% Similarity=0.240 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CCCEEEEHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999888866678999999997----7986999049999985000011-35665310001222111000111100124678
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EKIPVISSDDIVDKLYHYEAVD-IIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G~~v~~aD~i~~~l~~~~~~~-~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
+|||||+.||||||+++.|.+ .++.+++.|..-+ |...... .-...|.. ...+-+.+.+.+ ..++
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr--~dr~~r~~~~~t~~~P----~And~dll~~~l----~~Lk 70 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS--LDRKGRKETGITALDP----RANNFDLMYEQL----KALK 70 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHHHHHCCCCCCC----CHHHHHHHHHHH----HHHH
T ss_conf 98997888786999999999985848769996577788--9989998718776897----523499999999----9998
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCEEEEEEECCCHHHHHHHHHHC----CCCHHHHH
Q ss_conf 88753489999999-976677420247633345643-2555875642278999521113568888717----98989999
Q gi|255764477|r 78 ILEKIVHPMVRMHE-KKILHDLSCRGEKIVFFDTPL-LFEKRKEYLFDAVVVVTCSFETQRERVLSRK----KHTEENFL 151 (199)
Q Consensus 78 ~L~~iiHP~V~~~~-~~~i~~~~~~~~~~vv~e~pL-L~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~----~~s~e~~~ 151 (199)
.-..+--|. +... -.+-....-.+.+++|+|.-+ ++.....+.+|..|+|+++.++|..|-+.|| |.|.|.+.
T Consensus 71 ~Gk~i~~Pv-Ydh~tg~~~~~e~i~p~diII~EGLh~l~~~~lrdl~DLkIfVD~d~dlr~~rKI~RD~~ERGyS~E~V~ 149 (273)
T cd02026 71 EGQAIEKPI-YNHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVL 149 (273)
T ss_pred CCCCCCCCC-CCCCCCCCCCCEEECCCCEEEEECEECCCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 599534322-2145896577565068747999220002668898660746885687647999987766766488999999
Q ss_pred HHHHCCCCHHHH-----HHHCCEEEE
Q ss_conf 999729997899-----986898998
Q gi|255764477|r 152 FILSKQMNEKDK-----ISRADYVIN 172 (199)
Q Consensus 152 ~~~~~Q~~~~~k-----~~~aD~vI~ 172 (199)
.-+.+-+|...+ +++||.+|.
T Consensus 150 ~~I~rR~pDy~~yI~PQk~~ADI~iq 175 (273)
T cd02026 150 ASIEARKPDFEAYIDPQKQYADVVIQ 175 (273)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 99986047889750757500128999
No 26
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.25 E-value=1.1e-10 Score=87.31 Aligned_cols=157 Identities=21% Similarity=0.253 Sum_probs=92.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
.-|.++|.+||||||+++.|++ +|++.+|+|....+.++....+.. ...|+. .| +.+|
T Consensus 5 ~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D~~Ie~~~g~si~~if-~~~Ge~--------------~F------R~~E 63 (175)
T PRK00131 5 PNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTDHLIEARAGKSIPEIF-EEEGEA--------------GF------RELE 63 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHH-HHHCHH--------------HH------HHHH
T ss_conf 80898889999989999999999596902398899976169999999-985889--------------99------9999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHC--CC-----CHHH
Q ss_conf 53489999999976677420247633345--6432555875--642278999521113568888717--98-----9899
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRK--KH-----TEEN 149 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~--~~-----s~e~ 149 (199)
. +.+..... ..+.||.- ...+.+.... .....+|+..+|.+...+|+..+. ++ +.+.
T Consensus 64 ~-----------~~l~~l~~-~~~~VIstGGG~v~~~~~~~~L~~~g~vV~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~ 131 (175)
T PRK00131 64 E-----------EVLAELLQ-RHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLARDRNRPLLQTEDPKEK 131 (175)
T ss_pred H-----------HHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 9-----------99996514-79859974898226889999998169379985799999998648999987889986999
Q ss_pred HHHHHHCCCCHHHHHHHCCEEEE-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999729997899986898998-799989999999999999999
Q gi|255764477|r 150 FLFILSKQMNEKDKISRADYVIN-TEGTIEAIEKETQKMLKYILK 193 (199)
Q Consensus 150 ~~~~~~~Q~~~~~k~~~aD~vI~-N~~s~~~l~~~i~~~~~~i~~ 193 (199)
+..+++.-. ..+.+.||++|+ ++.|+++.-.+|.+.++..++
T Consensus 132 l~~l~~~R~--~~Y~~~Ad~~Idt~~~s~~ei~~~Ii~~L~~~~~ 174 (175)
T PRK00131 132 LRALYEERD--PLYEEVADLTIETDRRSPEEVVNEILELLELLLR 174 (175)
T ss_pred HHHHHHHHH--HHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999999999--9897538999989999999999999999999852
No 27
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.25 E-value=9.1e-11 Score=87.93 Aligned_cols=150 Identities=23% Similarity=0.261 Sum_probs=96.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
|.|+|||-||.||||+|+.|+++|+++++.-+.+++ ++++....+..+..+ +.-...+..++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~lg~~~i~l~el~~e---~~~~~~~de~r~s~~--------------vD~d~~~~~le- 62 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRELGYKVIELNELAKE---NGLYTEYDELRKSVI--------------VDVDKLRKRLE- 62 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEHHHHHHH---CCCEECCCCCCCEEE--------------EEHHHHHHHHH-
T ss_conf 937993799986687999999829846619999986---697114377661588--------------66799998888-
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCH-
Q ss_conf 3489999999976677420247633345643255587564227899952111356888871798989999999729997-
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNE- 160 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q~~~- 160 (199)
|. + ...-.|+|.-+ +.+...||.||+..|+++.-.+||..| |++++.+..=...|+..
T Consensus 63 ---~~--------~------~~~~~Ivd~H~---~hl~~~~dlVvVLR~~p~~L~~RLk~R-Gy~~eKI~ENveAEi~~v 121 (180)
T COG1936 63 ---EL--------L------REGSGIVDSHL---SHLLPDCDLVVVLRADPEVLYERLKGR-GYSEEKILENVEAEILDV 121 (180)
T ss_pred ---HH--------H------CCCCEEEECHH---HHCCCCCCEEEEECCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
T ss_conf ---87--------5------05884761266---621787888999718989999999876-998789887799999999
Q ss_pred --HHHHHHCC--EEEE-CCCCHHHHHHHHHHHHHH
Q ss_conf --89998689--8998-799989999999999999
Q gi|255764477|r 161 --KDKISRAD--YVIN-TEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 161 --~~k~~~aD--~vI~-N~~s~~~l~~~i~~~~~~ 190 (199)
.+-....| +.++ .+.|+++.-..+..++..
T Consensus 122 i~~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 122 ILIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99999973476499978999999999999999703
No 28
>PRK13947 shikimate kinase; Provisional
Probab=99.23 E-value=1.8e-10 Score=86.05 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=93.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 95999888866678999999997-79869990499999850000113566531000122211100011110012467888
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L 79 (199)
|.-|.+.|.+||||||+++.|++ +|++.+|.|+.+.+-++....+.. +..|+.. | +.+
T Consensus 1 mknI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie~~~g~sI~eIf-~~~GE~~--------------F------R~~ 59 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIEKMAGMTVSEIF-EKDGEVR--------------F------RSL 59 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHCCCCHHHHH-HHHCHHH--------------H------HHH
T ss_conf 985899799999889999999999796989874999988299889999-9848999--------------9------999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHCCC-------CHH
Q ss_conf 753489999999976677420247633345--6432555875--64227899952111356888871798-------989
Q gi|255764477|r 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRKKH-------TEE 148 (199)
Q Consensus 80 ~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~~~-------s~e 148 (199)
|.- .+..... ..+.|+.- ...+.+.+.. +....+|+..+|.+...+|+.....- +.+
T Consensus 60 E~~-----------~l~~~~~-~~~~VistGGG~v~~~~n~~~l~~~g~vi~L~~~~~~l~~Rl~~~~~RPll~~~~~~~ 127 (171)
T PRK13947 60 EKA-----------AVRKAAR-LKNLVIATGGGVVLNPENIVQLRKNGVLICLVARPEVILRRIKKKKDRPLLMVGNPEE 127 (171)
T ss_pred HHH-----------HHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 999-----------9997403-6897997898500699999999968989997399999999972899999798998799
Q ss_pred HHHHHHHCCCCHHHHHHHCCEEEECCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999729997899986898998799-989999999999999999874
Q gi|255764477|r 149 NFLFILSKQMNEKDKISRADYVINTEG-TIEAIEKETQKMLKYILKIND 196 (199)
Q Consensus 149 ~~~~~~~~Q~~~~~k~~~aD~vI~N~~-s~~~l~~~i~~~~~~i~~l~~ 196 (199)
.+...++.-.|.. ..||++|++++ |+++. ++++++.+.++.|
T Consensus 128 ~l~~l~~~R~~~Y---~~Ad~~I~~~~~s~~ei---~~~Ii~~~~k~kn 170 (171)
T PRK13947 128 RIRELLKEREPFY---RFADFTIDTSDMTIDEV---AEEIIKAYIKLKN 170 (171)
T ss_pred HHHHHHHHHHHHH---HHCCEEEECCCCCHHHH---HHHHHHHHHHHCC
T ss_conf 9999999999999---97698988998999999---9999999997208
No 29
>PRK13946 shikimate kinase; Provisional
Probab=99.22 E-value=4.8e-10 Score=83.38 Aligned_cols=159 Identities=19% Similarity=0.279 Sum_probs=95.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
-|.++|.+||||||+++.|++ +|++.+|.|..+-+.++....+.. ...|+.. | +.+|.
T Consensus 22 nIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~~IE~~~g~sI~eIF-~~~GE~~--------------F------R~~E~ 80 (195)
T PRK13946 22 TVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIPEIF-ATYGEPE--------------F------RDLER 80 (195)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHH-HHHCHHH--------------H------HHHHH
T ss_conf 5899899999889999999999797989885999998099899999-9869799--------------9------99899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHC--CC----C-HHHH
Q ss_conf 3489999999976677420247633345--6432555875--642278999521113568888717--98----9-8999
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRK--KH----T-EENF 150 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~--~~----s-~e~~ 150 (199)
+.+...... .+.|+.- ...+.+.+.. +....+|+..+|.+...+|+.... ++ + .+.+
T Consensus 81 -----------~~l~~l~~~-~~~VIstGGG~v~~~~n~~~L~~~g~vI~L~~~~e~l~~Rl~~~~~RPLl~~~~~~~~l 148 (195)
T PRK13946 81 -----------RVIARLLKG-GPLVLATGGGAFMNEETRAAIREKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETL 148 (195)
T ss_pred -----------HHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf -----------999998648-98799758742368999999995796899849999999997289999989998879999
Q ss_pred HHHHHCCCCHHHHHHHCCEEEECC-CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999972999789998689899879-99899999999999999998742
Q gi|255764477|r 151 LFILSKQMNEKDKISRADYVINTE-GTIEAIEKETQKMLKYILKINDS 197 (199)
Q Consensus 151 ~~~~~~Q~~~~~k~~~aD~vI~N~-~s~~~l~~~i~~~~~~i~~l~~~ 197 (199)
...++.-.|.. . .||++|+++ .|+++.-.+|-+.++.+++-.+.
T Consensus 149 ~~l~~~R~~lY--~-~Ad~~I~t~~~s~~~ia~eIi~~L~~~~~~~~~ 193 (195)
T PRK13946 149 ARLMEERYPVY--A-QADLTVESRDVPHEVIADEVIEALAAYLEVEEA 193 (195)
T ss_pred HHHHHHHHHHH--H-HCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999--9-789898899899999999999999999856641
No 30
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.19 E-value=5.3e-10 Score=83.13 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=89.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
-|-++|.+||||||+++.|++ +|++.+|+|...-+-++....+... ..|+. -| +.+|.
T Consensus 4 ~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~~~g~sI~eif~-~~Ge~--------------~F------R~~E~ 62 (172)
T PRK03731 4 PLFLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQSTLQMTVAEIVE-REGWA--------------GF------RARES 62 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCCHHHHHH-HHCHH--------------HH------HHHHH
T ss_conf 88998899998899999999985999797869999883989999999-83989--------------99------99999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHH-----CC-C---C-H
Q ss_conf 3489999999976677420247633345--6432555875--64227899952111356888871-----79-8---9-8
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSR-----KK-H---T-E 147 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R-----~~-~---s-~ 147 (199)
- .+...... +.|+.- ...+.+.+.. .....||+..+|.+...+|+... +. + + .
T Consensus 63 ~-----------~l~~l~~~--~~VIstGGG~v~~~~n~~~L~~~g~vv~L~~~~~~l~~Rl~~~~~~~~RPll~~~~~~ 129 (172)
T PRK03731 63 A-----------ALEAVTAP--STVVATGGGIILTEENRAFMRNNGIVIYLCAPVSVLANRLEADPEEDQRPTLTGKPLS 129 (172)
T ss_pred H-----------HHHHHCCC--CEEEEECCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 9-----------99984278--8289807864268999999996899999979999999998138778989878899879
Q ss_pred HHHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9999999729997899986898998799989999999999999
Q gi|255764477|r 148 ENFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 148 e~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
+.+..+++.-. ..+.+.||++|+++.++++.-.+|-+.+++
T Consensus 130 ~~i~~l~~~R~--~~Y~~~a~~ii~~~~~~~~i~~~Il~~L~e 170 (172)
T PRK03731 130 EEVAEVLAERD--ALYREVAHHIIDATQPPSQVVSEILSALAQ 170 (172)
T ss_pred HHHHHHHHHHH--HHHHHHCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999--999984899887989999999999998732
No 31
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.18 E-value=4.8e-12 Score=95.93 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=84.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH-C-CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-
Q ss_conf 999888866678999999997-7-9869990499999850000113566531000122211100011110012467888-
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-E-KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL- 79 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~-G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L- 79 (199)
+|||+|+.||||||+|+.|.+ + +..+++.|...+..-+.+.-+.-...|. .-+.+|-+.+.+.+ ..++.-
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~~~~iI~qDdyYk~~~~~~~~~~~~~NfD---hP~AiD~~~l~~~L----~~l~~~~ 73 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWD---VLEALDMEAMMSTL----DYWRETG 73 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHCCCCCCC---CCCCCCHHHHHHHH----HHHHHCC
T ss_conf 9899688887599999999998799889715446788432762130576876---70120589999999----9999489
Q ss_pred -------------HHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCHHHHHHHHHHCC
Q ss_conf -------------75348999-9999976677420247633345643255-58756422789995211135688887179
Q gi|255764477|r 80 -------------EKIVHPMV-RMHEKKILHDLSCRGEKIVFFDTPLLFE-KRKEYLFDAVVVVTCSFETQRERVLSRKK 144 (199)
Q Consensus 80 -------------~~iiHP~V-~~~~~~~i~~~~~~~~~~vv~e~pLL~E-~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~ 144 (199)
.....|.. +....+..........+++++|.-|+|- ....+.||..|+|+||.++|++|.++|++
T Consensus 74 ~~~~~~~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~p~~iiIvEG~ll~~~~~lr~l~DlkiFvd~~~d~~l~RR~~Rd~ 153 (187)
T cd02024 74 HFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTG 153 (187)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECHHHCCCHHHHHHCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 76431013343566775674102221120001146896499991778719899998639679996999999999752578
Q ss_pred CC------HHHHHHHHHCCCCHHHH
Q ss_conf 89------89999999729997899
Q gi|255764477|r 145 HT------EENFLFILSKQMNEKDK 163 (199)
Q Consensus 145 ~s------~e~~~~~~~~Q~~~~~k 163 (199)
.. .+---...+..||..++
T Consensus 154 ~~~~~g~~~D~~~yf~~~V~P~y~k 178 (187)
T cd02024 154 YVTLEGFWPDPPGYFDGHVWPMYLK 178 (187)
T ss_pred CCCCCCCCCCCCHHHHCEECHHHHH
T ss_conf 5426847899952652504153898
No 32
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.18 E-value=1.2e-11 Score=93.50 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=91.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CC--CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999888866678999999997----79--869990499999850000113566531000122211100011110012467
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EK--IPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G--~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l 76 (199)
+|||+|+.||||||+|+.|.+ .| ..+++.|...+...... .... .|. ....++-..+.+.+ ..+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~~~~~~~-~~~~--n~D---~p~a~d~~ll~~~L----~~L 70 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPR-DEDG--NYD---FESILDLDLLNKNL----HDL 70 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCC--CCC---CHHHHHHHHHHHHH----HHH
T ss_conf 9899898977899999999999846488539995466645765200-0146--889---81353499999999----999
Q ss_pred HHHHHHHHHHH-HHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHH-HHHHHHHH----CCCCHHH
Q ss_conf 88875348999-99999766-774202476333456432555875642278999521113-56888871----7989899
Q gi|255764477|r 77 EILEKIVHPMV-RMHEKKIL-HDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFET-QRERVLSR----KKHTEEN 149 (199)
Q Consensus 77 ~~L~~iiHP~V-~~~~~~~i-~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~-r~~Rl~~R----~~~s~e~ 149 (199)
+.-+.+-.|.- +....+.- ........+++++|.-+++-..+.+.+|..|+|+++.++ |+.|.+.| +|.+.+.
T Consensus 71 ~~g~~v~~P~YDf~t~~r~~~~~~~~~p~~vIIvEGi~~l~~~lr~~~D~kIfvd~~~~~~Rl~RRi~RD~~eRg~~~~~ 150 (179)
T cd02028 71 LNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAEL 150 (179)
T ss_pred HCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEECHHHCCHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 77995575420043786069805960899789992434389989976686999978836888899999779773999999
Q ss_pred HHHHHHCCCCHHHH-----HHHCCEEEECC
Q ss_conf 99999729997899-----98689899879
Q gi|255764477|r 150 FLFILSKQMNEKDK-----ISRADYVINTE 174 (199)
Q Consensus 150 ~~~~~~~Q~~~~~k-----~~~aD~vI~N~ 174 (199)
....-... |..+. ...||.+|.|+
T Consensus 151 v~~q~~~~-p~~~~~i~p~~~~a~~iv~ns 179 (179)
T cd02028 151 TILMWPSV-PSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred HHHHHCCC-CCCHHHCCCCCHHCCEEEECC
T ss_conf 99986226-883553289712179874086
No 33
>PRK00625 shikimate kinase; Provisional
Probab=99.18 E-value=4.8e-10 Score=83.40 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=88.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-79869990499999850000---1135665310001222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEA---VDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~---~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
|.|.++|.+||||||+.+.|++ +|++.+|.|+..-+-++... ...+-+..|+.. | +
T Consensus 1 MnI~LIG~mGsGKStiGk~LA~~l~~~FvD~D~~Ie~~~~~~i~~Si~eIf~~~GE~~--------------F------R 60 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEG--------------F------C 60 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCHHHHHHHHCHHH--------------H------H
T ss_conf 9299989999988999999999939995774999999868652356999999718999--------------9------9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHCCC----CHHH
Q ss_conf 88753489999999976677420247633345--6432555875--64227899952111356888871798----9899
Q gi|255764477|r 78 ILEKIVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRKKH----TEEN 149 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~~~----s~e~ 149 (199)
.+|. +.+......+ .||.- ...+.+.++. +....||+.++|.+...+|+.+|... ..+.
T Consensus 61 ~~E~-----------~~l~~l~~~~--~VIstGGG~v~~~~n~~~Lk~~g~vV~L~~~~e~i~~Rl~~rpl~~~~~~~~~ 127 (173)
T PRK00625 61 EEEA-----------LALESLPVIP--SIVALGGGTLMHEESYDHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKKTPS 127 (173)
T ss_pred HHHH-----------HHHHHHCCCC--CEEECCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 9999-----------9999732489--68974885017899999999689999983999999999826998777883579
Q ss_pred HHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999729997899986898998799989999999999999999
Q gi|255764477|r 150 FLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLKYILK 193 (199)
Q Consensus 150 ~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~i~~ 193 (199)
+..+...- ...+.+.||++|++|.--.....-+....+++..
T Consensus 128 l~~l~~eR--~~lY~~~AD~iI~~d~~sit~~~~~~~~~~~~~~ 169 (173)
T PRK00625 128 LEEILTQR--IDRMREIADYIFSLDHVALTSESSLMSACQSFCT 169 (173)
T ss_pred HHHHHHHH--HHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999--9999997999996899761325449999999999
No 34
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.18 E-value=1.1e-09 Score=81.05 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=94.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
.|++.|..||||||+.+.|++ +|++.+|.|..+-+..+...-+.. ..+|+.. | ..+|.
T Consensus 135 rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD~~IEk~aG~sI~eIF-a~~GE~~--------------F------R~~E~ 193 (304)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIF-ALYGQEG--------------Y------RRLER 193 (304)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHH-HHHCHHH--------------H------HHHHH
T ss_conf 4798899999888999999999598977877999999299999999-9868899--------------9------99999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHC---C----C-CHHH
Q ss_conf 3489999999976677420247633345--6432555875--642278999521113568888717---9----8-9899
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRK---K----H-TEEN 149 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~---~----~-s~e~ 149 (199)
+.+...-..+.+.|+.- ...+-+.++. .....||+..|+++.-.+|+...+ . - ..++
T Consensus 194 -----------~~L~~ll~~~~~~VIAtGGGiV~~~~n~~~L~~~g~vVwL~aspe~l~~Rv~~~gd~RPLl~~~~a~e~ 262 (304)
T PRK08154 194 -----------RALERLIAEHEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMED 262 (304)
T ss_pred -----------HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf -----------999998711699899728721278899999996898999979999999998648999999999888999
Q ss_pred HHHHHHCCCCHHHHHHHCCEEEECCC-CHHHHHHHHHHHHHHH
Q ss_conf 99999729997899986898998799-9899999999999999
Q gi|255764477|r 150 FLFILSKQMNEKDKISRADYVINTEG-TIEAIEKETQKMLKYI 191 (199)
Q Consensus 150 ~~~~~~~Q~~~~~k~~~aD~vI~N~~-s~~~l~~~i~~~~~~i 191 (199)
+..+++.-.|.+. .||++|+.+| |+++...++..++...
T Consensus 263 L~~ll~~R~plY~---~AD~~IdTsg~tvees~~~L~~lv~~~ 302 (304)
T PRK08154 263 LRRILASREPLYA---RADAVVDTSGLTVEASLARLRELVRPA 302 (304)
T ss_pred HHHHHHHHHHHHH---HCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9999998788998---689898799999999999999999986
No 35
>PRK13949 shikimate kinase; Provisional
Probab=99.16 E-value=9.5e-10 Score=81.55 Aligned_cols=150 Identities=21% Similarity=0.233 Sum_probs=85.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 95999888866678999999997-79869990499999850000113566531000122211100011110012467888
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L 79 (199)
|+.|.+.|.+||||||+++.|++ +|++.+|+|..+-+-.+....+.+ ...|+. .| +.+
T Consensus 1 Mk~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~Ie~~~g~sI~eif-~~~Ge~--------------~F------R~~ 59 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIF-AERGEA--------------VF------REL 59 (169)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCCHHHHH-HHHCHH--------------HH------HHH
T ss_conf 983899799999889999999999599979784999998599999999-986989--------------99------999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHH---CC----CCHH
Q ss_conf 753489999999976677420247633345--6432555875--64227899952111356888871---79----8989
Q gi|255764477|r 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSR---KK----HTEE 148 (199)
Q Consensus 80 ~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R---~~----~s~e 148 (199)
| .+.+..... ..+.||.- ...+.+.++. .....+|+..+|.+...+|+... +. .+.+
T Consensus 60 E-----------~~~l~~l~~-~~~~VistGGG~v~~~~n~~~l~~~g~vV~L~~~~~~l~~Rl~~~~~~RPll~~~~~~ 127 (169)
T PRK13949 60 E-----------RNMLHEVAE-FEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDE 127 (169)
T ss_pred H-----------HHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 9-----------999999845-8983997486311579999999968957999899999999975689999987898989
Q ss_pred HHHHHHHCCCC--HHHHHHHCCEEEECCC-CHHHHHHHH
Q ss_conf 99999972999--7899986898998799-989999999
Q gi|255764477|r 149 NFLFILSKQMN--EKDKISRADYVINTEG-TIEAIEKET 184 (199)
Q Consensus 149 ~~~~~~~~Q~~--~~~k~~~aD~vI~N~~-s~~~l~~~i 184 (199)
+....+...+. ...+.+ ||++|++++ |+++.-.++
T Consensus 128 e~~~~i~~~~~~R~~~Y~~-A~~~I~td~~s~~~i~~~I 165 (169)
T PRK13949 128 ELLDFIIEALEKRAPFYRQ-AKIIFNADKLEDESQIEQL 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCEEEECCCCCHHHHHHHH
T ss_conf 9999999999999999997-9989989999999999999
No 36
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=99.15 E-value=5.6e-11 Score=89.25 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=89.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CC----CEEEEHHHHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 5999888866678999999997----79----86999049999--98500001135665310001222111000111100
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EK----IPVISSDDIVD--KLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQK 71 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G----~~v~~aD~i~~--~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~ 71 (199)
.+|||+|.+||||||+|+.|.+ .+ +.++..|-.-. ..+...... -.+-+++.+ |-..+.+.+
T Consensus 35 ~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH~~~~~L~~~~~~-~rkGaP~TF-----D~~~l~~~L-- 106 (230)
T PRK09270 35 TVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFHLDNAVLDARGLR-ARKGAPETF-----DVAGLAELL-- 106 (230)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCC-CCCCCCCCC-----CHHHHHHHH--
T ss_conf 899998999889999999999998623799857997365334572555435474-337991021-----698899999--
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCC-CCCC-CCCC---CCCCEEEEEEECCCHHHHHHHHHHC
Q ss_conf 12467888-7534899999999766774--202476333456-4325-5587---5642278999521113568888717
Q gi|255764477|r 72 SPAKLEIL-EKIVHPMVRMHEKKILHDL--SCRGEKIVFFDT-PLLF-EKRK---EYLFDAVVVVTCSFETQRERVLSRK 143 (199)
Q Consensus 72 ~~~~l~~L-~~iiHP~V~~~~~~~i~~~--~~~~~~~vv~e~-pLL~-E~~~---~~~~d~vi~V~a~~~~r~~Rl~~R~ 143 (199)
..++.- ..+..|.--......+... -....+++++|. =||+ |..| ...||..|||+||.+++.+|+.+|+
T Consensus 107 --~~Lk~~~~~v~~P~yD~~~~d~~~~~~~i~~~~~IVIvEGnyLLld~~~W~~l~~~~D~~ifvd~~~~~~~~Rli~R~ 184 (230)
T PRK09270 107 --RRLREGDCEVYWPVFDRQLEDPVADAIVVGPTARLVIVEGNYLLLDDEPWRRLAGFFDFSIFLDAPAEVLRERLVARK 184 (230)
T ss_pred --HHHHCCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEECEEEECCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHH
T ss_conf --998568971752134322457788953666998689993447613783289999863767998489999999999999
Q ss_pred ---CCCHHHHHHHHHCC-CCHHH----HHHHCCEEEECCCC
Q ss_conf ---98989999999729-99789----99868989987999
Q gi|255764477|r 144 ---KHTEENFLFILSKQ-MNEKD----KISRADYVINTEGT 176 (199)
Q Consensus 144 ---~~s~e~~~~~~~~Q-~~~~~----k~~~aD~vI~N~~s 176 (199)
|.|.+++..+...- .+... ....||+||.+..+
T Consensus 185 ~~~G~s~e~a~~r~~~nD~pN~~~V~~~~~~aD~vi~~~~~ 225 (230)
T PRK09270 185 LAGGLSPEAARAFYLRNDGPNARLVLETSRPADLVLEMTAT 225 (230)
T ss_pred HHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 87299999999999716610799998579889889995676
No 37
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.14 E-value=1.3e-09 Score=80.74 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=88.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
-|.|+|.+||||||+++.|++ +|++.+|.|...-+-++....+.. ...|+.. | +.+|.
T Consensus 6 nI~LiG~mGsGKstvgk~LA~~l~~~fiD~D~~Ie~~~g~si~~If-~~~Ge~~--------------F------R~~E~ 64 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVF-DVEGEEG--------------F------RDREE 64 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHH-HHHHHHH--------------H------HHHHH
T ss_conf 2898899999889999999999699968780999999798999999-9974999--------------9------99999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHH--CCC----CH-HHH
Q ss_conf 3489999999976677420247633345--6432555875--64227899952111356888871--798----98-999
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSR--KKH----TE-ENF 150 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R--~~~----s~-e~~ 150 (199)
+.+.....+ ...||.- ..++.+.... +....||+..++.+...+|+... +++ +. +.+
T Consensus 65 -----------~~l~~l~~~-~~~VIstGGG~v~~~~~~~~L~~~g~vv~L~~~~~~~~~R~~~~~~RPll~~~~~~~~~ 132 (172)
T PRK05057 65 -----------KVINELTEK-QGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVL 132 (172)
T ss_pred -----------HHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf -----------999988547-99799789853588999999996695899959989999980589999979899879999
Q ss_pred HHHHHCCCCHHHHHHHCCEEEECC-CCHHHHHHHHHHHHHH
Q ss_conf 999972999789998689899879-9989999999999999
Q gi|255764477|r 151 LFILSKQMNEKDKISRADYVINTE-GTIEAIEKETQKMLKY 190 (199)
Q Consensus 151 ~~~~~~Q~~~~~k~~~aD~vI~N~-~s~~~l~~~i~~~~~~ 190 (199)
....+.- ...+.+.||++|+++ .|.++.-.+|.+++++
T Consensus 133 ~~l~~~R--~~~Y~~~Ad~~I~td~~~~~~i~~~Ii~~L~~ 171 (172)
T PRK05057 133 EALANER--NPLYEEIADVTVRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHHHH--HHHHHHHCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 9999999--99999869999989999999999999999960
No 38
>PRK13948 shikimate kinase; Provisional
Probab=99.12 E-value=1.3e-09 Score=80.61 Aligned_cols=157 Identities=15% Similarity=0.225 Sum_probs=89.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
.|.++|.+||||||+.+.|++ +|++.+|.|+...+.++....+.. ...|+. .| +.+|.
T Consensus 12 ~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~Ie~~~g~sI~eIF-~~~GE~--------------~F------R~~E~ 70 (182)
T PRK13948 12 FVALAGFMGTGKSRIGWELSRALALHFVDTDKLITRVVGKSIPEVF-AQEGEE--------------YF------RACEK 70 (182)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHH-HHHCHH--------------HH------HHHHH
T ss_conf 1898899999889999999999695988884999998893999999-984899--------------99------99999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHC-C-C----CHHHHH
Q ss_conf 3489999999976677420247633345--6432555875--642278999521113568888717-9-8----989999
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRK-K-H----TEENFL 151 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~-~-~----s~e~~~ 151 (199)
+.+...... ...||.- ...+.+.+.. .....||+..++.+...+|+...+ . + +.+.+.
T Consensus 71 -----------~~l~~l~~~-~~~VIStGGG~v~~~~n~~~l~~~g~vv~L~~~~~~i~~R~~~~~RPll~~~~~~~~l~ 138 (182)
T PRK13948 71 -----------EVVRRVTRL-DYAVISLGGGTFIHEENRRALLGRGPVVVLWASPETVYQRTKHSDRPLLQVEDPLERIR 138 (182)
T ss_pred -----------HHHHHHHCC-CCEEEECCCCEECCHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf -----------999999747-99699758850058999999996898999969999999881789999888998799999
Q ss_pred HHHHCCCCHHHHHHHCCEEEECCC-CHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999729997899986898998799-98999999999999999987428
Q gi|255764477|r 152 FILSKQMNEKDKISRADYVINTEG-TIEAIEKETQKMLKYILKINDSK 198 (199)
Q Consensus 152 ~~~~~Q~~~~~k~~~aD~vI~N~~-s~~~l~~~i~~~~~~i~~l~~~k 198 (199)
..+..-.|.. .+ ||++|++++ |+++. ++++++.|....+++
T Consensus 139 ~l~~eR~~~Y--~~-A~~~I~td~~~~~ei---v~~Ii~~L~a~~~~~ 180 (182)
T PRK13948 139 TLMEEREPVY--RQ-GTIHVHSDGRPVEEI---VEEVVERLWAWAEAQ 180 (182)
T ss_pred HHHHHHHHHH--HH-CCEEEECCCCCHHHH---HHHHHHHHHHHHHCC
T ss_conf 9999999999--96-788988998999999---999999999998665
No 39
>PRK02496 adk adenylate kinase; Provisional
Probab=99.06 E-value=4.3e-09 Score=77.40 Aligned_cols=160 Identities=22% Similarity=0.221 Sum_probs=98.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHH--HHHHHHHHH--HHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 95999888866678999999997-7986999049999985000--011356653--100012221110001111001246
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYE--AVDIIKKTF--PRSIQNNKVNKARLLGILQKSPAK 75 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~--~~~~i~~~f--g~~i~~~~i~r~~l~~~vf~~~~~ 75 (199)
|+.|-+.|++||||+|.|+.|++ +|+..+++.++.++....+ .-..+.... |..+.|
T Consensus 1 m~riillG~PGSGKgTqa~~L~~~~~~~his~GdllR~~~~~~s~lg~~i~~~i~~G~lvpd------------------ 62 (185)
T PRK02496 1 MARLIFLGPPGAGKGTQAVVLAEHLQIPHISTGDILRQAITEQTPLGIKAQGYVDSGELVPD------------------ 62 (185)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC------------------
T ss_conf 91899979999998999999999969977888899999987499889999999987996772------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CC------CCCC---CCCCCCEEEEEEECCCHHHHHHHHHHCCC
Q ss_conf 78887534899999999766774202476333456-43------2555---87564227899952111356888871798
Q gi|255764477|r 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT-PL------LFEK---RKEYLFDAVVVVTCSFETQRERVLSRKKH 145 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~-pL------L~E~---~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~ 145 (199)
.++..++. +.+..... ..-+++|. |= .|+. ......|.||+++||.++-.+|+..|...
T Consensus 63 -----~iv~~li~----~~l~~~~~--~~g~ilDGfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~R~ 131 (185)
T PRK02496 63 -----QLVLGLVQ----ERLQQPDA--ANGWILDGFPRNVTQAAFLDELLQEINQSGDRVVNLDVPDDVIVERLLARGRK 131 (185)
T ss_pred -----HHHHHHHH----HHHHCCCC--CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCC
T ss_conf -----88999999----99848453--38778868988578899999999970567303333049999999998746767
Q ss_pred --CHHHHHHHHHCCCC-----HHHHHHHCC-EEEECCCCHHHHHHHHHHHHH
Q ss_conf --98999999972999-----789998689-899879998999999999999
Q gi|255764477|r 146 --TEENFLFILSKQMN-----EKDKISRAD-YVINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 146 --s~e~~~~~~~~Q~~-----~~~k~~~aD-~vI~N~~s~~~l~~~i~~~~~ 189 (199)
+.+.+.+|++.... .+.+.+..- ..|+-++++++...++..++.
T Consensus 132 DD~~e~i~~Rl~~y~~~t~pvi~~y~~~~~~~~Idg~~~ieeV~~~I~~~l~ 183 (185)
T PRK02496 132 DDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTRLKAALA 183 (185)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 8988999999999999999999999846978999899998999999999863
No 40
>PRK06547 hypothetical protein; Provisional
Probab=99.01 E-value=3.1e-09 Score=78.29 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=79.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHC--CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 959998888666789999999977--986999049999985000011356653100012221110001111001246788
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKE--KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~--G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~ 78 (199)
|.+|+|-|.-||||||++..|.+. ++.|+.+|+...-- +....-...+
T Consensus 15 ~~iVaIDG~sGaGKTTLA~~La~~~~~~~vvHmDD~Y~GW---~gl~~~~~~l--------------------------- 64 (184)
T PRK06547 15 MITVLIDGRSGSGKTTLAGELAACWEGSQLVHLDDLYPGW---DGLAAASEHV--------------------------- 64 (184)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC---CCCHHHHHHH---------------------------
T ss_conf 6999986899888899999999745798289705777776---5404689999---------------------------
Q ss_pred HHHHHHHHHHHH-----HHHHH-----HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHH
Q ss_conf 875348999999-----99766-----77420247633345643255587564227899952111356888871798989
Q gi|255764477|r 79 LEKIVHPMVRMH-----EKKIL-----HDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEE 148 (199)
Q Consensus 79 L~~iiHP~V~~~-----~~~~i-----~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e 148 (199)
.+.++.|+-... .-++. .........++|+|.-=..-.......|..|.|++|.++|.+|.+.|||--.
T Consensus 65 ~~~VL~Pl~~G~~~~yr~~DW~~~~~~~~~~v~~~~~lIvEGvga~~~~~r~~~d~~IWve~~~~~r~~R~l~RDGe~~- 143 (184)
T PRK06547 65 REALLDPRALGRPGRWRRWDWANNCPGGWVTVEPGRRLIIEGVGALTAANRALADLTVWLEGPEALRKQRALTRDPDYA- 143 (184)
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCCCCCCEECCCCCCEEEECCCCCCHHHCCCCCEEEEEECCHHHHHHHHHHCCCCHH-
T ss_conf 9998646418997366062157899787567378881899662315631314123777774898999999986095026-
Q ss_pred HHHHHHHCCCCHHHH-------HHHCCEEEECCCC
Q ss_conf 999999729997899-------9868989987999
Q gi|255764477|r 149 NFLFILSKQMNEKDK-------ISRADYVINTEGT 176 (199)
Q Consensus 149 ~~~~~~~~Q~~~~~k-------~~~aD~vI~N~~s 176 (199)
. .++.-++.++. .+.||+||+|..+
T Consensus 144 ~---~w~~W~~~E~~~fa~~~~~~~AD~iv~~t~~ 175 (184)
T PRK06547 144 P---HWDMWAAQEERHIARYDPRDVADLLGSDTAS 175 (184)
T ss_pred H---HHHHHHHHHHHHHHCCCCHHHCEEEEECCCC
T ss_conf 9---9999999999998559916608189837999
No 41
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.95 E-value=2.1e-08 Score=73.07 Aligned_cols=163 Identities=23% Similarity=0.308 Sum_probs=96.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-7986999049999985000--011356653100012221110001111001246788
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYE--AVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~--~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~ 78 (199)
|.|-+.|++||||+|.|+.|++ +|++.+++.++.++....+ .-..+.. .+..|.+ | |
T Consensus 1 m~iillG~PGsGKgTqa~~la~~~~~~~is~GdllR~~i~~~s~~g~~i~~----~~~~G~l--------V---p----- 60 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAIKAGTELGKEAKS----YMDAGEL--------V---P----- 60 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHH----HHHCCCC--------C---C-----
T ss_conf 979998999998799999999986991786889999998739988999999----9977987--------7---8-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-C------CCCCC---CCCCCCEEEEEEECCCHHHHHHHHHHC-----
Q ss_conf 87534899999999766774202476333456-4------32555---875642278999521113568888717-----
Q gi|255764477|r 79 LEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT-P------LLFEK---RKEYLFDAVVVVTCSFETQRERVLSRK----- 143 (199)
Q Consensus 79 L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~-p------LL~E~---~~~~~~d~vi~V~a~~~~r~~Rl~~R~----- 143 (199)
..++..++ .+.+..... .+-+++|. | -.|+. ......|.||+.++|.++..+|+..|.
T Consensus 61 -d~i~~~lv----~~~l~~~~~--~~G~IlDGfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v~~~~~~~Rl~~R~~~~~~ 133 (215)
T PRK00279 61 -DEIVIGLV----KERLAQPDC--ANGFLLDGFPRTIPQAEALDEMLKEAGIKLDAVIEIDVPDEELVERLSGRRICPAC 133 (215)
T ss_pred -HHHHHHHH----HHHHHCCCC--CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCC
T ss_conf -89999999----999836565--57079868999879999999999864998688999968899999998611567556
Q ss_pred ----------------------------CCCHHHHHHHHHCCC----C-HHHHHHHCCE-EEECCCCHHHHHHHHHHHHH
Q ss_conf ----------------------------989899999997299----9-7899986898-99879998999999999999
Q gi|255764477|r 144 ----------------------------KHTEENFLFILSKQM----N-EKDKISRADY-VINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 144 ----------------------------~~s~e~~~~~~~~Q~----~-~~~k~~~aD~-vI~N~~s~~~l~~~i~~~~~ 189 (199)
.=+.+.+.+|++.-. | .+.+.+..-+ .|+-++++++...+|.+++.
T Consensus 134 g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pvi~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 213 (215)
T PRK00279 134 GRTYHVKFNPPKVEGKCDVTGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 76455457898866645543320257999869999999999999888999999817978999898998999999999984
Q ss_pred HH
Q ss_conf 99
Q gi|255764477|r 190 YI 191 (199)
Q Consensus 190 ~i 191 (199)
.+
T Consensus 214 ~~ 215 (215)
T PRK00279 214 KL 215 (215)
T ss_pred CC
T ss_conf 49
No 42
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.94 E-value=1.8e-08 Score=73.47 Aligned_cols=155 Identities=25% Similarity=0.304 Sum_probs=91.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 95999888866678999999997-79869990499999850000113566531000122211100011110012467888
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L 79 (199)
|+-|.+.|.+||||||+.+.|++ +|++.+|+|...-+-++..+.+.. +..|+.. | ..+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF-~~~GE~~--------------F------R~~ 60 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIF-EEEGEEG--------------F------RRL 60 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHH-HHHHHHH--------------H------HHH
T ss_conf 961899717999776899999998199802246999999796999999-9982899--------------9------999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHCC------CCH-H
Q ss_conf 753489999999976677420247633345--6432555875--6422789995211135688887179------898-9
Q gi|255764477|r 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRKK------HTE-E 148 (199)
Q Consensus 80 ~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~~------~s~-e 148 (199)
|. +.+......+ +.|+.- ...+.|.+.. +....||+..+|.++..+|+...+. -++ +
T Consensus 61 E~-----------~vl~~l~~~~-~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~ 128 (172)
T COG0703 61 ET-----------EVLKELLEED-NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPRE 128 (172)
T ss_pred HH-----------HHHHHHHHCC-CEEEECCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 99-----------9999986269-95997798611689999999848858999699999999823466798656777689
Q ss_pred HHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 999999729997899986898998799989999999999999
Q gi|255764477|r 149 NFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 149 ~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
.+...++.-.|. +.+.||++++.+...+..-.+|...+..
T Consensus 129 ~l~~L~~~R~~~--Y~e~a~~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 129 ELEELLEERQPL--YREVADFIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred HHHHHHHHHHHH--HHHHCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999999998999--9972748844899848999999999987
No 43
>PRK05416 hypothetical protein; Provisional
Probab=98.92 E-value=6.4e-08 Score=70.09 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=80.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9599988886667899999999779869990--49999985000011356653100012221110001111001246788
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISS--DDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~a--D~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~ 78 (199)
|.+|-|||..||||||+.+.|+.+||.++|- =.+..++.+ ... ..+...+=+++--+- +......
T Consensus 6 m~lviVTGlSGAGKStAl~~LEDlGy~ciDNlP~~Ll~~l~~---------~~~---~~~~~~~lAv~iD~R-~~~~~~~ 72 (292)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALEDLGYYCVDNLPPSLLPKLVE---------LLA---QSGGIDKVAVVIDVR-SRPFFLD 72 (292)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHH---------HHH---CCCCCCCEEEEEECC-CCCCHHH
T ss_conf 689999689978799999999817944786888899999999---------972---478877069998246-6544778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC---CC-----CHHHH
Q ss_conf 87534899999999766774202476333456432555875642278999521113568888717---98-----98999
Q gi|255764477|r 79 LEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK---KH-----TEENF 150 (199)
Q Consensus 79 L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~---~~-----s~e~~ 150 (199)
+ ...+...+.++..+ .++|.+|+.++-++|..+-+ .+ +..++
T Consensus 73 l------------~~~~~~l~~~~~~~------------------~ilFLdA~~~~LlrRy~eTRR~HPL~~~~~~L~ea 122 (292)
T PRK05416 73 L------------PEALDELRERGIDV------------------RVLFLDASDEVLIRRYSETRRRHPLSGDGGSLLEA 122 (292)
T ss_pred H------------HHHHHHHHHCCCCE------------------EEEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 9------------99999998579955------------------99999788699999887506899988899998999
Q ss_pred HHHHHCCCCHHHHHHHCCEEEECCC-CHHHHHHHHHHHHH
Q ss_conf 9999729997899986898998799-98999999999999
Q gi|255764477|r 151 LFILSKQMNEKDKISRADYVINTEG-TIEAIEKETQKMLK 189 (199)
Q Consensus 151 ~~~~~~Q~~~~~k~~~aD~vI~N~~-s~~~l~~~i~~~~~ 189 (199)
...... -...-+..||++|+++. +..+|+.++...+.
T Consensus 123 I~~Er~--~L~~ir~~Ad~vIDTS~l~~~~Lr~~i~~~~~ 160 (292)
T PRK05416 123 IELERE--LLAPLRERADLVIDTSELSVHQLRERIRERFG 160 (292)
T ss_pred HHHHHH--HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 999999--99999974028974799999999999999865
No 44
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.89 E-value=2.1e-07 Score=66.82 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=95.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH----HHHH----HHHHHHH---HHHCCCCC---CCCCCCHH
Q ss_conf 5999888866678999999997-7986999049999985----0000----1135665---31000122---21110001
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLY----HYEA----VDIIKKT---FPRSIQNN---KVNKARLL 66 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~----~~~~----~~~i~~~---fg~~i~~~---~i~r~~l~ 66 (199)
++|+|-|..||||||+|+.+++ +||+++|+..+.|-+. .... ...+... +.-.+.+. -++-..+.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs 84 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS 84 (222)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEECCCCEEEECCCCCH
T ss_conf 49997688756847899999998098666454999999999998089975599999999858811046715887782003
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC--
Q ss_conf 111001246788875-34899999999766774202476333456432555875642278999521113568888717--
Q gi|255764477|r 67 GILQKSPAKLEILEK-IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK-- 143 (199)
Q Consensus 67 ~~vf~~~~~l~~L~~-iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~-- 143 (199)
+.+-++. .-+.... -.||.|+.......+..-..+ +-+|+|.-=+ -+--...-+.-||++|+.++|-+|..+-.
T Consensus 85 ~~ir~~~-V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~-~~~V~dGRDi-GTvV~PdA~lKiFLtAS~e~RA~RR~~q~~~ 161 (222)
T COG0283 85 EEIRTEE-VGNAASKVAAIPEVREALVKLQRAFAKNG-PGIVADGRDI-GTVVFPDAELKIFLTASPEERAERRYKQLQA 161 (222)
T ss_pred HHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHCC-CCEEEECCCC-CCEECCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 6651689-99999999725999999999999998438-9889866876-6567789875789868889999999998774
Q ss_pred -CCCH--HHHH----HHHHCCCCHHH--HHHHCC-EEEECCC-CHHHHHHHHHHHHH
Q ss_conf -9898--9999----99972999789--998689-8998799-98999999999999
Q gi|255764477|r 144 -KHTE--ENFL----FILSKQMNEKD--KISRAD-YVINTEG-TIEAIEKETQKMLK 189 (199)
Q Consensus 144 -~~s~--e~~~----~~~~~Q~~~~~--k~~~aD-~vI~N~~-s~~~l~~~i~~~~~ 189 (199)
|.+. +++. .|...-..... .++-.| ++|+++. |+++.-.++..+++
T Consensus 162 ~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 162 KGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 467203999999999862301137678886789748997898829999999999999
No 45
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.86 E-value=3.7e-07 Score=65.32 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=94.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH----HHHH----HHHHHHHHHH---CCC-CCC-----CCCC
Q ss_conf 5999888866678999999997-7986999049999985----0000----1135665310---001-222-----1110
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLY----HYEA----VDIIKKTFPR---SIQ-NNK-----VNKA 63 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~----~~~~----~~~i~~~fg~---~i~-~~~-----i~r~ 63 (199)
.+|+|-|..||||||+|+.+++ +||.++|+..+.|.+. +... ...+...... .+. +.. ++-.
T Consensus 5 iIIaIDGpagSGKST~ak~lA~~L~~~yldTG~~YRa~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~l~~~ 84 (225)
T PRK00023 5 PVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALQHGVDLEDEEALVALAAHLDISFENGPDGQEVFLNGE 84 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCC
T ss_conf 78996589867878999999999398876410999999999998485965799999998549820036887637986795
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 0011110012467888753-489999999976677420247633345643255587564227899952111356888871
Q gi|255764477|r 64 RLLGILQKSPAKLEILEKI-VHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSR 142 (199)
Q Consensus 64 ~l~~~vf~~~~~l~~L~~i-iHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R 142 (199)
.+...+-+..-. .....+ -+|.|+.......+..... +-+|+|.-=+ -+--...-|.-+|++|+.++|-+|...-
T Consensus 85 dv~~~lrs~eI~-~~vS~iA~~~~VR~~l~~~Qr~~~~~--~g~V~eGRDI-GTvVfPdA~lK~fL~As~~~RA~RR~~e 160 (225)
T PRK00023 85 DVSDEIRTEEVG-NAASKVAAIPEVREALVERQRAFAEA--PGLVMDGRDI-GTVVFPDAELKIFLTASAEERAERRYKE 160 (225)
T ss_pred CCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHC--CCEEEECCCC-CEEEECCCCEEEEEECCHHHHHHHHHHH
T ss_conf 127988227888-88988638788999999999999853--6916742543-1388068876777867989999999999
Q ss_pred -----CCCCHHHHH----HHHHCCCCHHH-HHHHCC--EEEECCC-CHHHHHHHHHHHHHH
Q ss_conf -----798989999----99972999789-998689--8998799-989999999999999
Q gi|255764477|r 143 -----KKHTEENFL----FILSKQMNEKD-KISRAD--YVINTEG-TIEAIEKETQKMLKY 190 (199)
Q Consensus 143 -----~~~s~e~~~----~~~~~Q~~~~~-k~~~aD--~vI~N~~-s~~~l~~~i~~~~~~ 190 (199)
.+.+.+++. .|...-.+... -...|+ ++|+|+. |+++.-.++.+++++
T Consensus 161 l~~~g~~~~~~~v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDts~lti~evv~~i~~~i~~ 221 (225)
T PRK00023 161 LQAKGISVNFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALIEQ 221 (225)
T ss_pred HHHCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9875887779999999986342023377678754898189989899999999999999999
No 46
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.85 E-value=6.1e-08 Score=70.20 Aligned_cols=137 Identities=26% Similarity=0.272 Sum_probs=78.5
Q ss_pred EEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99888866678999999997-79869990499999850000113566531000122211100011110012467888753
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKI 82 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~i 82 (199)
|.+.|.+||||||+++.|++ +|++.+|.|....+.++....+.+ ...|+.. | +.+|.
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie~~~g~si~eif-~~~Ge~~--------------F------R~~E~- 59 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIF-AEEGEEG--------------F------RELER- 59 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCCHHHHH-HHCCHHH--------------H------HHHHH-
T ss_conf 899889999889999999999798979685999999499999999-8749387--------------8------99999-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCC--CCCCEEEEEEECCCHHHHHHHHHHC--C----CCHHHHHH
Q ss_conf 489999999976677420247633345--643255587--5642278999521113568888717--9----89899999
Q gi|255764477|r 83 VHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRK--EYLFDAVVVVTCSFETQRERVLSRK--K----HTEENFLF 152 (199)
Q Consensus 83 iHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~--~~~~d~vi~V~a~~~~r~~Rl~~R~--~----~s~e~~~~ 152 (199)
+.+..... ....||.- ..++.+... -.....+|++.+|.+...+|+.... + .+.+.+..
T Consensus 60 ----------~~l~~~~~-~~~~VIs~GGG~v~~~~~~~~l~~~~~vI~L~~~~~~l~~Rl~~~~~RPll~~~~~~~l~~ 128 (154)
T cd00464 60 ----------EVLLLLLT-KENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRE 128 (154)
T ss_pred ----------HHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf ----------99999856-8985997389733689999999957908999579999999960799999888999999999
Q ss_pred HHHCCCCHHHHHHHCCEEEECCC
Q ss_conf 99729997899986898998799
Q gi|255764477|r 153 ILSKQMNEKDKISRADYVINTEG 175 (199)
Q Consensus 153 ~~~~Q~~~~~k~~~aD~vI~N~~ 175 (199)
.++.- ...+.+.||++|+.++
T Consensus 129 l~~~R--~~~Y~~~Ad~~i~~~~ 149 (154)
T cd00464 129 LLEER--EPLYREVADLTIDTDE 149 (154)
T ss_pred HHHHH--HHHHHHHCCEEEECCC
T ss_conf 99999--9999987999997989
No 47
>KOG3347 consensus
Probab=98.83 E-value=7.5e-08 Score=69.65 Aligned_cols=155 Identities=22% Similarity=0.267 Sum_probs=95.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9998888666789999999977-986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~-G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
-|-|||.+|.||||.|+.++++ |++.++..+++++= . +..-|.+... -.++.....+..|+.
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn---~----l~~gyDE~y~----------c~i~DEdkv~D~Le~ 71 (176)
T KOG3347 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN---N----LYEGYDEEYK----------CHILDEDKVLDELEP 71 (176)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHH---C----CHHCCCCCCC----------CCCCCHHHHHHHHHH
T ss_conf 8798679998802599999997398567455677661---1----0210232236----------754567899988889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCC-
Q ss_conf 3489999999976677420247633345643255587--5642278999521113568888717989899999997299-
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRK--EYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQM- 158 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~--~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q~- 158 (199)
.+ .++. .|+|- --.++ ..|||.|+++.||-+.-..||.+| |+++..+...+...+
T Consensus 72 ~m----------------~~Gg--~IVDy---HgCd~FperwfdlVvVLr~~~s~LY~RL~sR-gY~e~Ki~eNiecEIf 129 (176)
T KOG3347 72 LM----------------IEGG--NIVDY---HGCDFFPERWFDLVVVLRTPNSVLYDRLKSR-GYSEKKIKENIECEIF 129 (176)
T ss_pred HH----------------HCCC--CEEEE---CCCCCCCHHHEEEEEEEECCCHHHHHHHHHC-CCCHHHHHHHCCHHHH
T ss_conf 87----------------5688--48860---0567650113557999946845999999975-8888887651015899
Q ss_pred --CHHH--HHHHCCEEEEC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf --9789--99868989987-99989999999999999999874
Q gi|255764477|r 159 --NEKD--KISRADYVINT-EGTIEAIEKETQKMLKYILKIND 196 (199)
Q Consensus 159 --~~~~--k~~~aD~vI~N-~~s~~~l~~~i~~~~~~i~~l~~ 196 (199)
-.++ ..-.++.|..= ..+.++....+.++++.+..+..
T Consensus 130 gv~~eea~eSy~~~iV~eL~s~~~Eem~~ni~ri~~w~~~w~~ 172 (176)
T KOG3347 130 GVVLEEARESYSPKIVVELQSETKEEMESNISRILNWTRMWKK 172 (176)
T ss_pred HHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999987187421334767789999989999999998751
No 48
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.77 E-value=1.7e-08 Score=73.68 Aligned_cols=179 Identities=17% Similarity=0.249 Sum_probs=82.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997----798699904999998500001135665310001222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
|.|++-|..||||||.++.|++ .|++++-...- -..+..+.+.+.+... ++.++-.... ..|. .....
T Consensus 4 ~fIviEGiDGsGKsTq~~~L~~~L~~~g~~v~~t~eP----~~t~~g~~ir~~~~~~--~~~~~~~~~~-lLf~-adR~~ 75 (204)
T PRK00698 4 MFITIEGIDGAGKSTQIELLAERLEEQGRDVVFTREP----GGTPLGEKLRELLLDP--NEPMDDKTEL-LLFL-AARAQ 75 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC----CCCCHHHHHHHHHHCC--CCCCCHHHHH-HHHH-HHHHH
T ss_conf 1999988999989999999999999679978998699----9980699999998277--7679989999-9999-99999
Q ss_pred HHHHHHHHHHHHHH----HHHHHH-HHCCCCCCCCCCCCCCCC--CCC--CCCCEEEEEEECCCHHHHHHHHHHCCCCHH
Q ss_conf 88753489999999----976677-420247633345643255--587--564227899952111356888871798989
Q gi|255764477|r 78 ILEKIVHPMVRMHE----KKILHD-LSCRGEKIVFFDTPLLFE--KRK--EYLFDAVVVVTCSFETQRERVLSRKKHTEE 148 (199)
Q Consensus 78 ~L~~iiHP~V~~~~----~~~i~~-~~~~~~~~vv~e~pLL~E--~~~--~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e 148 (199)
.++..+.|....-. .+++.. .-.++..-- ++...+.+ ..+ ...-|.+++.++|+++..+|+..|++.+..
T Consensus 76 ~~~~~I~p~L~~g~iVI~DRy~~S~~aYqg~~~~-~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~ 154 (204)
T PRK00698 76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRG-LDIDLLAALNRFALGGFRPDLTLYLDVPPEVGLARIAARGELDRI 154 (204)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCC-CCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCH
T ss_conf 9999999888369989983640509999986079-999999999988727999985899817999999999837986420
Q ss_pred H-----HHHHHHCCCCHHHHHHH--CC-EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 9-----99999729997899986--89-89987999899999999999999
Q gi|255764477|r 149 N-----FLFILSKQMNEKDKISR--AD-YVINTEGTIEAIEKETQKMLKYI 191 (199)
Q Consensus 149 ~-----~~~~~~~Q~~~~~k~~~--aD-~vI~N~~s~~~l~~~i~~~~~~i 191 (199)
+ +...... -.....+. .. .+|+-+.+++++..+|-++++.+
T Consensus 155 e~~~~~~~~kv~~--~Y~~l~~~~~~~~~~IDa~~~~eeV~~~I~~~i~~~ 203 (204)
T PRK00698 155 EQEGLDFFERVRE--GYLELAAADPERIVVIDASQSLEEVHEDILAVLKAW 203 (204)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 1500999999999--999999858896899849999999999999999964
No 49
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.76 E-value=1.4e-06 Score=61.77 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=91.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH----HHH----HHHHHHHHHHH---CCCCCC--CCCCCHHHH
Q ss_conf 999888866678999999997-7986999049999985----000----01135665310---001222--111000111
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLY----HYE----AVDIIKKTFPR---SIQNNK--VNKARLLGI 68 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~----~~~----~~~~i~~~fg~---~i~~~~--i~r~~l~~~ 68 (199)
||+|-|..||||||+|+.+++ +||.++|+..+.|-+. +.. ....+.+.... .+.+.. ++...+.+.
T Consensus 444 IIaIDGpagsGKsT~ak~lA~~l~~~yldTG~~YRa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dv~~~ 523 (662)
T PRK11860 444 VICIDGPTASGKGTLAAAVAQALGYHYLDSGALYRLTALAALRAGLSLDDEAAIAALARGLPVRFEGDRIWLGGEDVTDA 523 (662)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEECCCEEEECCCCCHHH
T ss_conf 89965787568689999999995996762539999999999971989767999999996198453476688658465576
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH---CC
Q ss_conf 10012467888753-489999999976677420247633345643255587564227899952111356888871---79
Q gi|255764477|r 69 LQKSPAKLEILEKI-VHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSR---KK 144 (199)
Q Consensus 69 vf~~~~~l~~L~~i-iHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R---~~ 144 (199)
+.+.. .-+....+ -.|.|+.....+.+..... +-+|+|.-=+ -+--...-+.-+|++|+.++|-+|...- .|
T Consensus 524 ir~~~-v~~~~S~ia~~~~VR~~l~~~Qr~~~~~--~g~V~eGRDi-gtvVfPdA~~K~fl~As~~~RA~RR~~ql~~~g 599 (662)
T PRK11860 524 IRTEE-AGMNASRVSALPAVRAALLALQHSFRRL--PGLVADGRDM-GTVIFPDAALKVFLTASAEARAERRYKQLISKG 599 (662)
T ss_pred HCCHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHC--CCEEEECCCC-CCEECCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 50678-8899999859699999999999986546--8989989988-776888998559998999999999999999769
Q ss_pred --CCHHHH----HHHHHCCCCHHH--HHHHCC-EEEECCC-CHHHHHHHHHHHHHH
Q ss_conf --898999----999972999789--998689-8998799-989999999999999
Q gi|255764477|r 145 --HTEENF----LFILSKQMNEKD--KISRAD-YVINTEG-TIEAIEKETQKMLKY 190 (199)
Q Consensus 145 --~s~e~~----~~~~~~Q~~~~~--k~~~aD-~vI~N~~-s~~~l~~~i~~~~~~ 190 (199)
.+.+++ ..|...-...+. .+.--| ++|+|+. |+++.-.+|-+++++
T Consensus 600 ~~~~~~~v~~~i~~RD~~D~~R~~sPL~~a~dAi~iDts~l~i~evv~~il~~~~~ 655 (662)
T PRK11860 600 ISANIASLRADLEARDARDANRSVAPLKPAQDALLLDNSDLTIEEAVNQVLDWWQE 655 (662)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 98899999999998604224477688755898189979899999999999999995
No 50
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=98.75 E-value=4.9e-07 Score=64.52 Aligned_cols=187 Identities=11% Similarity=0.066 Sum_probs=92.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH----HHHH-------H-HHHHHHHHH-------CCC-CC-
Q ss_conf 95999888866678999999997-7986999049999985----0000-------1-135665310-------001-22-
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLY----HYEA-------V-DIIKKTFPR-------SIQ-NN- 58 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~----~~~~-------~-~~i~~~fg~-------~i~-~~- 58 (199)
|++|+|-|..||||||+|+.+++ +||.++|+..+.|-+. +... . ..+.+.... .+. +.
T Consensus 4 ~iiIAIDGPagsGKSTvak~lA~~Lg~~yLDTGamYRava~~~l~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (714)
T PRK09518 4 MIIVAIDGPAGVGKSSVSRALAQYFGYAYLDTGAMYRACAWWCLKQGIDLDAETVDERSVTEAVGEFFSGDHFDISVDPD 83 (714)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 88999778986589999999999949918870299999999999809896404567899998898762168636611788
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf ----211100011110012467888753-48999999997667742-024763334564325558756422789995211
Q gi|255764477|r 59 ----KVNKARLLGILQKSPAKLEILEKI-VHPMVRMHEKKILHDLS-CRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSF 132 (199)
Q Consensus 59 ----~i~r~~l~~~vf~~~~~l~~L~~i-iHP~V~~~~~~~i~~~~-~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~ 132 (199)
.+|-.-+...+.+.. .-.....+ -+|.|+......-+..- ..+..-+|+|.-=+ -+--...-+.-+|.+|+.
T Consensus 84 ~~~v~l~g~dVt~~IR~~e-V~~~vS~VA~~p~VR~~L~~~QR~~~~~~~~~giV~eGRDI-GTVVfPdA~~KifLtAs~ 161 (714)
T PRK09518 84 SPEVFADDEDISEEIRSPE-VTSHVSAVANIIPVRNVLIAAQRALIAREASADIVAEGRDI-TTVVAPDAEVKIFLTASE 161 (714)
T ss_pred CCEEEECCEECHHHHCCHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC-CCEECCCCCEEEEEECCH
T ss_conf 7579989988367553368-89999988497999999999999999708998779866876-536758998579997998
Q ss_pred HHHHHHHHHHCC-C----CHHHHHHHHHCCCCH-HHHHHHCCEE--EECCC-CHHHHHHHHHHHHHH
Q ss_conf 135688887179-8----989999999729997-8999868989--98799-989999999999999
Q gi|255764477|r 133 ETQRERVLSRKK-H----TEENFLFILSKQMNE-KDKISRADYV--INTEG-TIEAIEKETQKMLKY 190 (199)
Q Consensus 133 ~~r~~Rl~~R~~-~----s~e~~~~~~~~Q~~~-~~k~~~aD~v--I~N~~-s~~~l~~~i~~~~~~ 190 (199)
++|-+|.-.-.. . ..+++.+|...- |. ..-...||-+ |+++. |+++.-.+|-.+++.
T Consensus 162 e~RA~RR~~q~~~~~~~~~~~~v~~RD~~D-Sr~~spl~~A~da~~iDss~l~~eevvd~i~~lv~~ 227 (714)
T PRK09518 162 EVRAARRSGQAVSGVGAAVLEDVAARDEAD-SKVTSFLSAAEGVTTLDTSDLDFAETLDLLIGLIED 227 (714)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999988776443220678999998641320-323576535898089868989799999999999987
No 51
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.74 E-value=7.1e-07 Score=63.55 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH----HHHH----HHHHHHHHHHC-C--C-C--C----CCCCC
Q ss_conf 999888866678999999997-7986999049999985----0000----11356653100-0--1-2--2----21110
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLY----HYEA----VDIIKKTFPRS-I--Q-N--N----KVNKA 63 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~----~~~~----~~~i~~~fg~~-i--~-~--~----~i~r~ 63 (199)
||+|-|..||||||+|+.+++ +||.++|+..+.|-+. +... ...+....... + . + + .+|..
T Consensus 286 IIAIDGPAgSGKSTvAK~lA~~L~~~yLDTGamYRAva~~~l~~~i~~~d~~~l~~~l~~~~i~~~~~~~~~~~i~lng~ 365 (512)
T PRK13477 286 IIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKLELKPSSGSPQRVWINGE 365 (512)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCCEEEEECCE
T ss_conf 79986787578789999999981996862449999999999975969768999999987298798318887628998885
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHH-
Q ss_conf 0011110012467888753-48999999997667742024763334564325558756422789995211135688887-
Q gi|255764477|r 64 RLLGILQKSPAKLEILEKI-VHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLS- 141 (199)
Q Consensus 64 ~l~~~vf~~~~~l~~L~~i-iHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~- 141 (199)
.+.+.+.+..-.. ....+ -+|.|+..+..+.+....++ -+|+|.-=+ -+--...-+.-+|++|+.++|-+|..+
T Consensus 366 dvt~~IRs~eVs~-~vS~vA~~p~VR~~l~~~QR~~a~~~--g~V~eGRDI-GTVVfPdA~lK~fLtAs~e~RA~RR~~e 441 (512)
T PRK13477 366 DVTEAIRSPEVTS-SVSAIAAQPCVRQALVKQQQRIGEKG--GLVAEGRDI-GTHVFPDAELKIFLTASVEERARRRALD 441 (512)
T ss_pred EHHHHHCCHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHCC--CEEEECCCC-CCEECCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 7066554478899-99998397989999999999984659--999979987-6667789996699989999999999999
Q ss_pred --HCC---CCHHHH----HHHHHCCCCHHH--HHHHCC-EEEECCC-CHHHHHHHHHHHHHH
Q ss_conf --179---898999----999972999789--998689-8998799-989999999999999
Q gi|255764477|r 142 --RKK---HTEENF----LFILSKQMNEKD--KISRAD-YVINTEG-TIEAIEKETQKMLKY 190 (199)
Q Consensus 142 --R~~---~s~e~~----~~~~~~Q~~~~~--k~~~aD-~vI~N~~-s~~~l~~~i~~~~~~ 190 (199)
..| .+.+++ ..|...-.+.+. .+.-.| ++|+++. |+++.-.+|-.++++
T Consensus 442 l~~~g~~~~s~~~i~~~I~~RD~~D~~R~~sPL~~A~DAi~IDTs~lsieeVv~kI~~l~~~ 503 (512)
T PRK13477 442 LEAQGFPVIDLEELEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99668887899999999998614314477688865898489989999999999999999997
No 52
>pfam01202 SKI Shikimate kinase.
Probab=98.72 E-value=1.8e-07 Score=67.28 Aligned_cols=144 Identities=25% Similarity=0.309 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66678999999997-79869990499999850000113566531000122211100011110012467888753489999
Q gi|255764477|r 10 IGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKIVHPMVR 88 (199)
Q Consensus 10 igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~iiHP~V~ 88 (199)
+||||||+++.|++ +|++.+|+|.+..+.++....+.+ ...|+. -| +.+|.
T Consensus 1 mGsGKstigk~LA~~L~~~fiD~D~~ie~~~g~si~eif-~~~Ge~--------------~F------R~~E~------- 52 (158)
T pfam01202 1 MGAGKTTIGRLLAKALGLPFIDTDQEIEKRTGMSIAEIF-EEEGEE--------------GF------RRLES------- 52 (158)
T ss_pred CCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHH-HHHCHH--------------HH------HHHHH-------
T ss_conf 989779999999999699978872999988788999999-981989--------------99------99999-------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHCCC------C-HHHHHHHHHCC
Q ss_conf 9999766774202476333456--432555875--64227899952111356888871798------9-89999999729
Q gi|255764477|r 89 MHEKKILHDLSCRGEKIVFFDT--PLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRKKH------T-EENFLFILSKQ 157 (199)
Q Consensus 89 ~~~~~~i~~~~~~~~~~vv~e~--pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~~~------s-~e~~~~~~~~Q 157 (199)
+.+...... .+.||.-. ..+.+.... .....+|++.+|.+...+|+..+..- + .+.+...+..-
T Consensus 53 ----~~l~~l~~~-~~~VIstGGG~v~~~~~~~~L~~~g~vi~L~~~~~~i~~Rl~~~~~RPll~~~~~~~~~~~l~~~R 127 (158)
T pfam01202 53 ----EVLKELLAE-HNAVIATGGGAVLSEENRDLLRENGIVVYLDADPEVLLERLKADKTRPLLQDKDPEEELLELLFER 127 (158)
T ss_pred ----HHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf ----999999716-994998078602589999999957927998499999999971799999898998799999999999
Q ss_pred CCHHHHHHHCCEEEECCC-CHHHHHHHHHHHH
Q ss_conf 997899986898998799-9899999999999
Q gi|255764477|r 158 MNEKDKISRADYVINTEG-TIEAIEKETQKML 188 (199)
Q Consensus 158 ~~~~~k~~~aD~vI~N~~-s~~~l~~~i~~~~ 188 (199)
...+.+.||++|+.++ +.++.-.++.+.+
T Consensus 128 --~~~Y~~~a~~~i~~~~~~~~ei~~~Ii~~l 157 (158)
T pfam01202 128 --CPLYEEAADIVVDTDESSPEEVAEEILEAL 157 (158)
T ss_pred --HHHHHHHCCEEEECCCCCHHHHHHHHHHHH
T ss_conf --999998699998799999999999999975
No 53
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=98.70 E-value=5e-07 Score=64.49 Aligned_cols=146 Identities=12% Similarity=0.176 Sum_probs=78.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 95999888866678999999997798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
|.+|-|||..||||||+.+.|+.+||.++|- +--.+. ..+.+.... .+..+.+-+++--+- +......+.
T Consensus 1 m~lviVTGlSGAGKStAl~~LED~Gy~cvDN--lP~~Ll-----~~~~~~~~~--~~~~~~~lAi~iD~R-~~~~~~~~~ 70 (284)
T pfam03668 1 IDLVIITGRSGAGKSVALRALEDLGYYCVDN--LPPQLL-----PRLVDFLLA--AGSRISSVAVVMDVR-NRPFSGDLD 70 (284)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCEEECC--CCHHHH-----HHHHHHHHH--CCCCCCEEEEEEECC-CCCCHHHHH
T ss_conf 9699995799777999999998189247758--899999-----999999862--478765268999636-653337699
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC---CC-----CHHHHHH
Q ss_conf 534899999999766774202476333456432555875642278999521113568888717---98-----9899999
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK---KH-----TEENFLF 152 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~---~~-----s~e~~~~ 152 (199)
..+......+. + -.++|.+|+.++-++|..+-+ .+ ..+-+.
T Consensus 71 ------------~~~~~l~~~~~-----~-------------~~ilFLdA~~~~LirRy~eTRR~HPL~~~~~~leaI~- 119 (284)
T pfam03668 71 ------------EQRNELATRAI-----T-------------PRILFLEADDDTLVRRYSDTRRSHPLSGKQLSLEGIA- 119 (284)
T ss_pred ------------HHHHHHHHCCC-----C-------------CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHH-
T ss_conf ------------99999986699-----8-------------2699997880899998887368899888898699999-
Q ss_pred HHHCCCCHHHHHHHCCEEEECCC-CHHHHHHHHHHHHH
Q ss_conf 99729997899986898998799-98999999999999
Q gi|255764477|r 153 ILSKQMNEKDKISRADYVINTEG-TIEAIEKETQKMLK 189 (199)
Q Consensus 153 ~~~~Q~~~~~k~~~aD~vI~N~~-s~~~l~~~i~~~~~ 189 (199)
.... -++.-+..||++|+++. +..+|+.++...+.
T Consensus 120 ~Er~--~L~~lr~~Ad~vIDTS~l~~~~Lr~~i~~~~~ 155 (284)
T pfam03668 120 AERR--LLEPLRARADLIIDTSTLSVHGLRESIRRAFG 155 (284)
T ss_pred HHHH--HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9999--99999962659985689999999999999864
No 54
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=98.70 E-value=2.8e-07 Score=66.06 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=48.2
Q ss_pred EEEEEECCC-HHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 789995211-1356888871798989999999729997899986898998799989999999999999
Q gi|255764477|r 124 AVVVVTCSF-ETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 124 ~vi~V~a~~-~~r~~Rl~~R~~~s~e~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
.+|+|.+|. +.-.+|+.+|..-+.+++..|++.-.-+-......|++|.|+ ++++...++.++++.
T Consensus 115 ~~IfI~pps~~~L~~RL~~Rg~~~~~~i~~Rl~~a~~e~~~~~~fD~vIvNd-dle~a~~~l~~ii~a 181 (182)
T pfam00625 115 ISVFIKPPSLKVLQRRLKGRGTEQEEKINKRMEAAEQEFQHYAEFDYIIVND-DLDEAYKKLKEILEA 181 (182)
T ss_pred EEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECC-CHHHHHHHHHHHHHC
T ss_conf 8999938799999999981488889999999999999973486199999898-999999999999973
No 55
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.67 E-value=1.2e-06 Score=62.07 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=75.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEE----HHHHHHHHHHHH-HHH------HHHHHHHHCC---CC--CCCCCC
Q ss_conf 95999888866678999999997-7986999----049999985000-011------3566531000---12--221110
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVIS----SDDIVDKLYHYE-AVD------IIKKTFPRSI---QN--NKVNKA 63 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~----aD~i~~~l~~~~-~~~------~i~~~fg~~i---~~--~~i~r~ 63 (199)
+++|+|.|.||+||||.++.|++ +|++++. -|......|+.. -+. .+.++|.+.- .+ +-.+|+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~drs 83 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNILDRS 83 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 60899844644687899999998838850222246784799998769974199999999999999999843155545854
Q ss_pred CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 00111100124678887---534899999999766774202476333456432555875642278999521113568888
Q gi|255764477|r 64 RLLGILQKSPAKLEILE---KIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVL 140 (199)
Q Consensus 64 ~l~~~vf~~~~~l~~L~---~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~ 140 (199)
||+|....+.++ .-+-|..+..-...+.. ++.+.| .....-|.+|+++|+.++-.+|+.
T Consensus 84 -----I~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~--------~~~~l~-----~~p~~PdllIyLd~~~e~~l~RI~ 145 (216)
T COG1428 84 -----IFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDN--------MLEELP-----YLPGRPDLLIYLDASLETLLRRIA 145 (216)
T ss_pred -----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------HHHHHC-----CCCCCCCEEEEEECCHHHHHHHHH
T ss_conf -----34257889998998478888899999999987--------998732-----578999889998278999999999
Q ss_pred HHCCCCHH
Q ss_conf 71798989
Q gi|255764477|r 141 SRKKHTEE 148 (199)
Q Consensus 141 ~R~~~s~e 148 (199)
+| |-+-|
T Consensus 146 ~R-gR~~E 152 (216)
T COG1428 146 KR-GRPFE 152 (216)
T ss_pred HH-CCCCC
T ss_conf 81-99740
No 56
>PRK06217 hypothetical protein; Validated
Probab=98.67 E-value=1.1e-07 Score=68.49 Aligned_cols=149 Identities=22% Similarity=0.269 Sum_probs=82.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 95999888866678999999997-79869990499999850000113566531000122211100011110012467888
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L 79 (199)
|+.|-|+|..||||||.++-|++ +|+++++.|+.. +.+..-. |. ..|. +..+..
T Consensus 1 m~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~~~---W~p~~~p-----f~-------~kR~---------~~eR~~- 55 (185)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAEALDLPHLDTDDFF---WLPTDPP-----FT-------TKRE---------PEERLR- 55 (185)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCE---ECCCCCC-----CC-------CCCC---------HHHHHH-
T ss_conf 967999789988789999999997598968645553---5689997-----56-------4379---------999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCEEEEEEECCCHHHHHHHHHHC-----------CCCH
Q ss_conf 7534899999999766774202476333456432-555875642278999521113568888717-----------9898
Q gi|255764477|r 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLL-FEKRKEYLFDAVVVVTCSFETQRERVLSRK-----------KHTE 147 (199)
Q Consensus 80 ~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL-~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~-----------~~s~ 147 (199)
.+......... -|++.-.. .-..+...||.||+++.|.++|++|+.+|. |-..
T Consensus 56 --------------ll~~~~~~~~~-WV~sGs~~~wgd~l~p~~DlvVfL~lP~~irl~Rlr~RE~~RyG~ri~pgGdm~ 120 (185)
T PRK06217 56 --------------LLLEDLRDSEG-WILSGSLLGWGDPLEPLFDLVVFLYIPPELRLERLRLREEQRYGNRILPGGDMH 120 (185)
T ss_pred --------------HHHHHHHCCCC-EEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf --------------99998637999-899577523232113435689998289899999999999986078668994188
Q ss_pred HHHHHHHHCCCC----------HHHH---HHH--CCE-EEECCCCHHHHHHHHHHHHH
Q ss_conf 999999972999----------7899---986--898-99879998999999999999
Q gi|255764477|r 148 ENFLFILSKQMN----------EKDK---ISR--ADY-VINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 148 e~~~~~~~~Q~~----------~~~k---~~~--aD~-vI~N~~s~~~l~~~i~~~~~ 189 (199)
++...++++-.+ ...- .+. |-+ -|+...+++++-.+|-..++
T Consensus 121 ~~~~~Fl~Wa~~YD~~~~~gRsl~~He~Wl~~~~cPVlrldg~~~~~~~~~~vl~~~~ 178 (185)
T PRK06217 121 KASLEFLEWAAQYDNAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEERLAQVLAALN 178 (185)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8889999999867889877644999999995289867997698989999999999974
No 57
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.64 E-value=5.5e-07 Score=64.23 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=67.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
+|+|-|..||||||+|+.+++ +||.++|+..+- ..+++ .+...+-.
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~~~~ldtG~ir---------------------~~ev~--~~~s~ia~---------- 47 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIR---------------------TEEVG--KLASEVAA---------- 47 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEECCCCCC---------------------CHHHH--HHHHHHCC----------
T ss_conf 9888689978989999999999099077665425---------------------48998--99999819----------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCHHHHHHHHH-----HCCCCHHHHHH
Q ss_conf 3489999999976677420247633345643255587--56422789995211135688887-----17989899999
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRK--EYLFDAVVVVTCSFETQRERVLS-----RKKHTEENFLF 152 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~--~~~~d~vi~V~a~~~~r~~Rl~~-----R~~~s~e~~~~ 152 (199)
+|.|+..+.......... +-+|+|.-. .++ ...-|.-+|++|+.++|-+|... +.+.+.+++..
T Consensus 48 --~~~VR~~l~~~Qr~~~~~--~~~V~eGRD---igtvV~P~A~lKifL~As~e~RA~RR~~e~~~~~~~~~~~~v~~ 118 (147)
T cd02020 48 --IPEVRKALDERQRELAKK--PGIVLEGRD---IGTVVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILA 118 (147)
T ss_pred --CHHHHHHHHHHHHHHHHC--CCEEEECCC---CCCEECCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf --788999999999999766--996897131---01024467476777758989999999999997577889999999
No 58
>KOG3079 consensus
Probab=98.57 E-value=2.1e-06 Score=60.62 Aligned_cols=161 Identities=21% Similarity=0.238 Sum_probs=96.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-79869990499999850000113566531000----122211100011110012467
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSI----QNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i----~~~~i~r~~l~~~vf~~~~~l 76 (199)
.||-|.||+||||.|.|.-+.+ +||..+||+++-|+..+.++ ..+|..+ .+|.+- | .
T Consensus 9 ~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~g-----se~g~~I~~~i~~G~iV-----------P--~ 70 (195)
T KOG3079 9 PIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAG-----SERGALIKEIIKNGDLV-----------P--V 70 (195)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCEEECHHHHHHHHHCCCC-----CHHHHHHHHHHHCCCCC-----------C--H
T ss_conf 8899976898882269999999769546328799999880546-----76789999999869967-----------4--8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-C------CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCC----
Q ss_conf 8887534899999999766774202476333456-4------3255587564227899952111356888871798----
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT-P------LLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKH---- 145 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~-p------LL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~---- 145 (199)
+...+ ...+.+.....++ .+++|. | .-||.......+.+++.+|++++=++|++.|+-.
T Consensus 71 ei~~~--------LL~~am~~~~~~~--~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~ 140 (195)
T KOG3079 71 EITLS--------LLEEAMRSSGDSN--GFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRS 140 (195)
T ss_pred HHHHH--------HHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCC
T ss_conf 99999--------9999999657788--3886589887688999998856787779998688899999999606657878
Q ss_pred --CHHHHHHHHHCC----CCHHHHHHHCC--EEEECCCCHHHHHHHHHHHHHH
Q ss_conf --989999999729----99789998689--8998799989999999999999
Q gi|255764477|r 146 --TEENFLFILSKQ----MNEKDKISRAD--YVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 146 --s~e~~~~~~~~Q----~~~~~k~~~aD--~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
+.+-+++|+..- .|.-+.-+..+ .-|+-+.+.++...++.+.+..
T Consensus 141 DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079 141 DDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 87557799999999870018999987359688751779878899999987403
No 59
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.57 E-value=4.8e-06 Score=58.35 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=39.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHC-----CCCHHHHHHHHHCC--CCHHHHHHHCCEEEE---CCCCHHHHHHHHH
Q ss_conf 2278999521113568888717-----98989999999729--997899986898998---7999899999999
Q gi|255764477|r 122 FDAVVVVTCSFETQRERVLSRK-----KHTEENFLFILSKQ--MNEKDKISRADYVIN---TEGTIEAIEKETQ 185 (199)
Q Consensus 122 ~d~vi~V~a~~~~r~~Rl~~R~-----~~s~e~~~~~~~~Q--~~~~~k~~~aD~vI~---N~~s~~~l~~~i~ 185 (199)
-|.+|++.||+++-++|+.+|+ +++.+-.+...+.- |=.....+.++.++. +-|+.+..-+.++
T Consensus 143 PdlvIYL~a~pe~~~~RI~kRgR~~E~~I~~~YL~~L~~~ye~~fl~~~~~~~~vlv~D~~~~~~~~~v~~~~e 216 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIE 216 (219)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99899983999999999998394754089999999999999999999886589679987665665999999998
No 60
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.57 E-value=1.3e-06 Score=61.91 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-79869990499999850000--113566531000122211100011110012467888
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEA--VDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~--~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L 79 (199)
++=+-|||||||.|-|..+.+ ++|..+||.++=|+-.+.++ ...+.+ ..|.+|+| | |..-
T Consensus 1 V~FvLGGPGSGKGTQCa~Iv~~f~~~HLSAGDLLR~E~~R~GSe~g~lI~---~~IkeG~I--------V---Ps~V--- 63 (189)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGYVHLSAGDLLRAEIKREGSENGELIE---SYIKEGKI--------V---PSEV--- 63 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCCHHH---HHHHCCCE--------E---HHEE---
T ss_conf 97763698987567899999853946880747889986104788850377---44115831--------1---1223---
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCC--CCCC-------CCEE--EEEEECCCHHHHHHHHHHCCC--
Q ss_conf 7534899999999766774202476333456-432555--8756-------4227--899952111356888871798--
Q gi|255764477|r 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFDT-PLLFEK--RKEY-------LFDA--VVVVTCSFETQRERVLSRKKH-- 145 (199)
Q Consensus 80 ~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~-pLL~E~--~~~~-------~~d~--vi~V~a~~~~r~~Rl~~R~~~-- 145 (199)
.-...++.+++... ..+..++|. |==.|+ +|.+ .++. |++++||+++=.+|+++|.-.
T Consensus 64 -------Tv~LL~kai~~~~W-~~~~FLIDGFPRN~eN~~~W~~~~P~~kv~~~~alVlF~dC~e~~m~~R~l~Rg~~SG 135 (189)
T TIGR01359 64 -------TVELLKKAIKEDGW-SSKKFLIDGFPRNEENLEAWEKLMPDNKVNVKFALVLFFDCPEEVMIKRLLKRGQTSG 135 (189)
T ss_pred -------EHHHHHHHHHHCCC-CCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCC
T ss_conf -------24588877763156-7882366257888878888986178776120267899986797147644314789478
Q ss_pred ----CHHHHHHHHHCCCC-----HHHHHHHCC--EEEECCCCHHHHHHHHHHHHH
Q ss_conf ----98999999972999-----789998689--899879998999999999999
Q gi|255764477|r 146 ----TEENFLFILSKQMN-----EKDKISRAD--YVINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 146 ----s~e~~~~~~~~Q~~-----~~~k~~~aD--~vI~N~~s~~~l~~~i~~~~~ 189 (199)
+.+-+++|+..-.. .+.+.+ ++ ..|+-++|.++.+.+|++++.
T Consensus 136 R~DDN~esl~KR~~~y~~~t~piIe~f~~-~~kv~~i~a~~~ve~Vf~~v~~~f~ 189 (189)
T TIGR01359 136 RVDDNIESLKKRFRTYNEETLPIIEYFEN-KGKVKEINAEGSVEEVFEDVEKIFA 189 (189)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 61071778888866540168302100002-7957982799998899999999709
No 61
>PRK04040 adenylate kinase; Provisional
Probab=98.57 E-value=4e-06 Score=58.82 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=86.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHC---CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 959998888666789999999977---98699904999998500001135665310001222111000111100124678
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKE---KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~---G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
|+++-+||-+|+||||+++.+.+. +|.++|...+--+.-... + .--+|+.++.+ ++...+
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~vn~G~~M~e~A~~~--------g------lv~~RDemRkL---~~~~q~ 64 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEE--------G------LVEHRDEMRKL---PLEEQK 64 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHC--------C------CCCCHHHHCCC---CHHHHH
T ss_conf 418999758988789999999997235875986779999999981--------7------73477887479---999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCC------CCEEEEEEECCCHHHHHHHHH----
Q ss_conf 887534899999999766774202476333456432555------8756------422789995211135688887----
Q gi|255764477|r 78 ILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK------RKEY------LFDAVVVVTCSFETQRERVLS---- 141 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~------~~~~------~~d~vi~V~a~~~~r~~Rl~~---- 141 (199)
.|. ...-+.+.+. .+...+++|--....+ |+.. .-|.+|+|.|+++..+.|-++
T Consensus 65 ~lQ--------~~Aa~~I~~~--~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~ivlieA~P~eIl~RR~~D~tR 134 (189)
T PRK04040 65 ELQ--------REAAERIAEM--AGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDPTR 134 (189)
T ss_pred HHH--------HHHHHHHHHH--CCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC
T ss_conf 999--------9999999983--578728994452002688677899899998669988999975889999988425566
Q ss_pred -HCCCCHHHHHHHHHCCCCHHH---HHHHCC-EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf -179898999999972999789---998689-89987999899999999999999
Q gi|255764477|r 142 -RKKHTEENFLFILSKQMNEKD---KISRAD-YVINTEGTIEAIEKETQKMLKYI 191 (199)
Q Consensus 142 -R~~~s~e~~~~~~~~Q~~~~~---k~~~aD-~vI~N~~s~~~l~~~i~~~~~~i 191 (199)
||-.|.+++..-...|-.... -.--|. ++|.|.... +..-+.++++-|
T Consensus 135 ~RD~es~~~I~~hq~~nR~~a~ayavltga~Vkiv~N~e~~--~e~Aa~~iv~~l 187 (189)
T PRK04040 135 RRDVETEESIEEHQEMNRAAAMAYAVLTGATVKIVENHEGL--LEEAAEEIVEVL 187 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC--HHHHHHHHHHHH
T ss_conf 89878899999999999999999999739848999789998--899999999986
No 62
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.57 E-value=1.1e-06 Score=62.33 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=43.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCHHHHH-----HHHHCCCCHHHHH-HH-C-CEEEECCCCHHHHHHHHHHHHH
Q ss_conf 4227899952111356888871798989999-----9997299978999-86-8-9899879998999999999999
Q gi|255764477|r 121 LFDAVVVVTCSFETQRERVLSRKKHTEENFL-----FILSKQMNEKDKI-SR-A-DYVINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 121 ~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~-----~~~~~Q~~~~~k~-~~-a-D~vI~N~~s~~~l~~~i~~~~~ 189 (199)
.-|.+++.++|+++..+|+.+|++.+..+.. ..... ...... .. . =.||+.+.++++...+|.+++.
T Consensus 125 ~PDl~i~Ld~~pe~~~~Ri~~R~~~~~~e~~~~~~~~kv~~--~Y~~~~~~~~~~~~vIDa~~~~eev~~~I~~~i~ 199 (200)
T cd01672 125 KPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFHERVRE--GYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred CCCEEEEEECCHHHHHHHHHHCCCCCHHHHCCHHHHHHHHH--HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99989998179999999998468987276515999999999--9999997588978998699999999999999971
No 63
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.56 E-value=1.5e-06 Score=61.41 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=92.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
-|.|.|-.||||||+++.|++ +|++.+++|+.- -.....++. -| +-++|...+-||+.
T Consensus 5 a~VVmGVsGsGKSTvg~~LA~~L~~~fiegDd~H----p~~Ni~KM~--~G---------------iPL~D~DR~pWL~~ 63 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLH----PAKNIDKMS--QG---------------IPLTDEDRLPWLER 63 (176)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEECCCCCC----CHHHHHHHH--CC---------------CCCCHHHHHHHHHH
T ss_conf 7999828989989999999999598776234437----898999986--89---------------99886679999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCEE--EEEEECCCHHHHHHHHHHCC--CCHHHHHHHHH
Q ss_conf 3489999999976677420247633345643255--587564227--89995211135688887179--89899999997
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFE--KRKEYLFDA--VVVVTCSFETQRERVLSRKK--HTEENFLFILS 155 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E--~~~~~~~d~--vi~V~a~~~~r~~Rl~~R~~--~s~e~~~~~~~ 155 (199)
+- ..+.....++...++.=.+|=-. .-+...... .|+..++.++..+|+..|.| ++.+....=++
T Consensus 64 l~---------~~~~~~~~~~~~~VvaCSALK~~YRd~Lr~~~~~v~fv~L~g~~~~i~~Rl~~R~gHFMp~~LL~SQf~ 134 (176)
T PRK09825 64 LN---------DASYSLYKKNETGFIVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFD 134 (176)
T ss_pred HH---------HHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99---------999999964998299718867999999974799879999718999999999746037999799998999
Q ss_pred -CCCCH-HHHHHHCCEE-EECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -29997-8999868989-987999899999999999999998
Q gi|255764477|r 156 -KQMNE-KDKISRADYV-INTEGTIEAIEKETQKMLKYILKI 194 (199)
Q Consensus 156 -~Q~~~-~~k~~~aD~v-I~N~~s~~~l~~~i~~~~~~i~~l 194 (199)
-+.|. +| .|.+ |+=+.+++++-.++.+.++-+.+-
T Consensus 135 tLE~P~~dE----~~v~~idi~~~~e~iv~~~~~al~a~~~a 172 (176)
T PRK09825 135 ALERPCADE----HDIARIDVNHDIENVTEQCRQAVQAFRQA 172 (176)
T ss_pred HHCCCCCCC----CCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 817999888----98699978999999999999999999987
No 64
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=98.54 E-value=1.7e-06 Score=61.20 Aligned_cols=161 Identities=22% Similarity=0.232 Sum_probs=102.5
Q ss_pred CEEEEEECCCCCCHHHHHHHH-HHCCCEEEEHHHHHHHHHHH--HHHHHHHH--HHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 959998888666789999999-97798699904999998500--00113566--53100012221110001111001246
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFL-KKEKIPVISSDDIVDKLYHY--EAVDIIKK--TFPRSIQNNKVNKARLLGILQKSPAK 75 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l-~~~G~~v~~aD~i~~~l~~~--~~~~~i~~--~fg~~i~~~~i~r~~l~~~vf~~~~~ 75 (199)
..||=|.|||||||.|=|..+ +++||..+|+.++=|+-... +--..+.. .-|..+.++. .
T Consensus 3 ~kIiFivGGPGSGKGTQC~KiV~KYGfTHLSsGdLLR~Ev~SgS~rg~~L~aiMe~G~LVp~~~---------------V 67 (191)
T TIGR01360 3 VKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSSGDLLREEVASGSERGKQLQAIMESGELVPLDV---------------V 67 (191)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHH---------------H
T ss_conf 7568886588888401368988641886454067889874157811478999986188555066---------------8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCC-------CEEEEEEECCCHHHHHHHHHHCCC--
Q ss_conf 78887534899999999766774202476333456-43255587564-------227899952111356888871798--
Q gi|255764477|r 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT-PLLFEKRKEYL-------FDAVVVVTCSFETQRERVLSRKKH-- 145 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~-pLL~E~~~~~~-------~d~vi~V~a~~~~r~~Rl~~R~~~-- 145 (199)
|.. .++.+-....++.+-+.+|. | =|.+.-.- -+.++|++|.+++=.+|+++|-..
T Consensus 68 L~L------------l~dAm~~~~~~GskGFLIDGYP--Rev~QG~eFe~~I~~a~L~Ly~d~s~dTmv~RLL~Ra~~S~ 133 (191)
T TIGR01360 68 LDL------------LKDAMLAALGKGSKGFLIDGYP--REVKQGEEFEKRIAPAKLVLYFDCSEDTMVKRLLKRAETSG 133 (191)
T ss_pred HHH------------HHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 999------------9999998624898631126873--32011245675159963464300044479999999876247
Q ss_pred ------CHHHHHHHHHCCC--C---HHHHHHHCC-EEEECCCCHHHHHHHHHHHHHH
Q ss_conf ------9899999997299--9---789998689-8998799989999999999999
Q gi|255764477|r 146 ------TEENFLFILSKQM--N---EKDKISRAD-YVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 146 ------s~e~~~~~~~~Q~--~---~~~k~~~aD-~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
+.+-+++|+..-. + .+.+..+.- .-|+-+||.++...+|-..+..
T Consensus 134 vkR~DDn~~TI~kRL~ty~~~t~pvi~yYe~kg~~~~iNAEG~vddvF~~vv~~lD~ 190 (191)
T TIGR01360 134 VKRVDDNEKTIKKRLETYYKATEPVIAYYESKGKLLKINAEGTVDDVFLQVVAALDK 190 (191)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 998898878999999998850288998617887157742778775899999997426
No 65
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.53 E-value=5.7e-07 Score=64.13 Aligned_cols=165 Identities=22% Similarity=0.272 Sum_probs=85.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC--CCEEEEHHHHHHHHH--HHHH--HH-HHHHHHHHCCCCCCC-CCCCHHHHHHHHH
Q ss_conf 59998888666789999999977--986999049999985--0000--11-356653100012221-1100011110012
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE--KIPVISSDDIVDKLY--HYEA--VD-IIKKTFPRSIQNNKV-NKARLLGILQKSP 73 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~--G~~v~~aD~i~~~l~--~~~~--~~-~i~~~fg~~i~~~~i-~r~~l~~~vf~~~ 73 (199)
.+|.|+|-.||||+|+.+.|.+. ++...=+ -..|.-- +.++ +. .-.+.|-..+.+|.. .-.......++-+
T Consensus 2 ~livl~GpsG~GK~tl~~~l~~~~~~~~~~vs-~TTR~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 80 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSIS-ATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEEEECCCCCCCC
T ss_conf 39999899988999999999976899448870-44689799877887347850899999986496488767716763574
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCCCCEEEEEEECC-CHHHHHHHHHHCCCCHH
Q ss_conf 4678887534899999999766774202476333456----432555875642278999521-11356888871798989
Q gi|255764477|r 74 AKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT----PLLFEKRKEYLFDAVVVVTCS-FETQRERVLSRKKHTEE 148 (199)
Q Consensus 74 ~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~----pLL~E~~~~~~~d~vi~V~a~-~~~r~~Rl~~R~~~s~e 148 (199)
...+.....++ +.+++++ +.-+...+. --.+|+|.+| .+...+|+.+|..-+.+
T Consensus 81 ------------------~~~i~~~~~~g-k~vil~id~~G~~~lk~~~~--~~~~IfI~pps~~~L~~RL~~Rg~e~~~ 139 (180)
T TIGR03263 81 ------------------KSPVEEALAAG-KDVLLEIDVQGARQVKKKFP--DAVSIFILPPSLEELERRLRKRGTDSEE 139 (180)
T ss_pred ------------------HHHHHHHHHHC-CCEEEECCHHHHHHHHHHCC--CEEEEEEECCCHHHHHHHHHHCCCCCHH
T ss_conf ------------------79999999609-98999878999999997588--6489999688999999999964899989
Q ss_pred HHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99999972999789998689899879998999999999999
Q gi|255764477|r 149 NFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 149 ~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~ 189 (199)
+++.|+++.-.+-......|++|.|+ ++++...++..++.
T Consensus 140 ~i~~Rl~~a~~E~~~~~~fD~vIvNd-dle~a~~~l~~ii~ 179 (180)
T TIGR03263 140 VIERRLAKAKKEIAHADEFDYVIVND-DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECC-CHHHHHHHHHHHHC
T ss_conf 99999999999998774399999897-99999999999971
No 66
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.49 E-value=8.3e-07 Score=63.09 Aligned_cols=166 Identities=19% Similarity=0.267 Sum_probs=87.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC--CCEEEEHHHHHHHHH--HHHH--HHH-HHHHHHHCCCCCCC-CCCCHHHHHHHHH
Q ss_conf 59998888666789999999977--986999049999985--0000--113-56653100012221-1100011110012
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE--KIPVISSDDIVDKLY--HYEA--VDI-IKKTFPRSIQNNKV-NKARLLGILQKSP 73 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~--G~~v~~aD~i~~~l~--~~~~--~~~-i~~~fg~~i~~~~i-~r~~l~~~vf~~~ 73 (199)
++|.|+|..|+||||+++.|.+. +.-.++.--..|.-- +.++ |.. -.+.|-..+.+|.. .-...-...++.+
T Consensus 8 ~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~g~~YGT~ 87 (208)
T PRK00300 8 LLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVFGNYYGTP 87 (208)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCEECC
T ss_conf 38999999988999999999972998689989746889899877896579961999999986283667899838703524
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCCCCEEEEEEECCC-HHHHHHHHHHCCCCHH
Q ss_conf 4678887534899999999766774202476333456----4325558756422789995211-1356888871798989
Q gi|255764477|r 74 AKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT----PLLFEKRKEYLFDAVVVVTCSF-ETQRERVLSRKKHTEE 148 (199)
Q Consensus 74 ~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~----pLL~E~~~~~~~d~vi~V~a~~-~~r~~Rl~~R~~~s~e 148 (199)
...+...-.++. .+++|+ +.-....+.+ -..|+|..|. +.-.+|+..|..-+.+
T Consensus 88 ------------------~~~I~~~~~~G~-~vildidvqGa~~lk~~~~~--~~~IFI~Pps~e~L~~RL~~Rg~es~~ 146 (208)
T PRK00300 88 ------------------REPVEEALAAGK-DVLLEIDWQGAQQVKKKMPD--AVSIFILPPSLEELERRLRGRGTDSEE 146 (208)
T ss_pred ------------------HHHHHHHHHCCC-CEEEECCHHHHHHHHHHCCC--CEEEEEECCCHHHHHHHHHHCCCCCHH
T ss_conf ------------------699999985699-87974678999999985977--579998288999999999863899888
Q ss_pred HHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99999972999789998689899879998999999999999
Q gi|255764477|r 149 NFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 149 ~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~ 189 (199)
++..|++..-.+-......||||.|+ +++....++..++.
T Consensus 147 ~I~~Rl~~A~~El~~~~~fD~vIiNd-dl~~a~~~l~~ii~ 186 (208)
T PRK00300 147 VIARRLEAAKEEIAHASEYDYVIVND-DLETALEELKAIIR 186 (208)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECC-CHHHHHHHHHHHHH
T ss_conf 99999999999998885599999899-99999999999999
No 67
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.47 E-value=2.7e-06 Score=59.87 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=49.9
Q ss_pred EEEEEECC-CHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 78999521-11356888871798989999999729997899986898998799989999999999999
Q gi|255764477|r 124 AVVVVTCS-FETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 124 ~vi~V~a~-~~~r~~Rl~~R~~~s~e~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
.+|+|..| .+.-.+|+..|..-+.+++..|+.+--.+.......|++|.|+ ++++...++..+++.
T Consensus 116 ~~Ifi~pps~e~L~~RL~~Rg~~~~~~i~~Rl~~a~~e~~~~~~fd~vIvN~-dl~~a~~~l~~iI~~ 182 (184)
T smart00072 116 IVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLFDYVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred EEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECC-CHHHHHHHHHHHHHH
T ss_conf 7999938999999999971699999999999999999996473399999898-999999999999985
No 68
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.46 E-value=3.5e-06 Score=59.20 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=87.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
.+|.|.|-.||||||+++.|++ +|++.+++|+.=-+ +...++. - .+-.+|...+-||+
T Consensus 9 ~iiVVMGVsGsGKSTig~~LA~~l~~~fiegDdfHp~----~Ni~KM~--~---------------GiPLtD~DR~pWL~ 67 (177)
T PRK11545 9 HIYVLMGVSGSGKSAVASAVAHQLHAAFLDGDFLHPR----CNIEKMA--S---------------GEPLNDDDRKPWLQ 67 (177)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCCCH----HHHHHHH--C---------------CCCCCHHHHHHHHH
T ss_conf 5999984798999999999999819985536555899----9999862--8---------------99998688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCC--EEEEEEECCCHHHHHHHHHHCC--CCHHHHHHH
Q ss_conf 534899999999766774202476333456432555---875642--2789995211135688887179--898999999
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK---RKEYLF--DAVVVVTCSFETQRERVLSRKK--HTEENFLFI 153 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~---~~~~~~--d~vi~V~a~~~~r~~Rl~~R~~--~s~e~~~~~ 153 (199)
.+- ..+......+...++.=.+| -++ -+..-. -..|+...+.++..+|+..|.| ++.+....=
T Consensus 68 ~l~---------~~~~~~~~~~~~~VlaCSAL-Kr~YRd~Lr~~~~~~~fv~L~g~~~~i~~Rl~~R~~HFmp~~LL~SQ 137 (177)
T PRK11545 68 ALN---------DAAFAMQRTNKVSLIVCSAL-KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQ 137 (177)
T ss_pred HHH---------HHHHHHHCCCCCEEEEECCC-CHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 999---------99999972699669987011-19999999806997599997299999999997464689987899989
Q ss_pred HHC-CCCHHHHHHHCCE-EEECCCCHHHHHHHHHHHHH
Q ss_conf 972-9997899986898-99879998999999999999
Q gi|255764477|r 154 LSK-QMNEKDKISRADY-VINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 154 ~~~-Q~~~~~k~~~aD~-vI~N~~s~~~l~~~i~~~~~ 189 (199)
++. +.|.. .-.|. +|+=+.+++++-.++-+.++
T Consensus 138 f~tLE~P~~---~E~~~~~vdi~~~~e~iv~~il~~l~ 172 (177)
T PRK11545 138 FETLQEPGA---DETDVLVVDIDQPLEGVVASTIEVIK 172 (177)
T ss_pred HHHHCCCCC---CCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 998179998---88986999789999999999999997
No 69
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.43 E-value=1e-05 Score=56.24 Aligned_cols=182 Identities=20% Similarity=0.193 Sum_probs=85.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH----CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf 95999888866678999999997----7986999049999985000011356653100012--22111000111100124
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK----EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQN--NKVNKARLLGILQKSPA 74 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~----~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~--~~i~r~~l~~~vf~~~~ 74 (199)
+|.|.+-|.=||||||.++.|++ .|+.|+=. -++.. ..+-+..-+...+ ..++....+-... ..
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t-------rEP~~-~~ige~iR~~ll~~~~~~~~~~e~lLfa--ad 72 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT-------REPGG-TPIGEKIRELLLNGEEKLSPKAEALLFA--AD 72 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-------ECCCC-CHHHHHHHHHHCCCCCCCCHHHHHHHHH--HH
T ss_conf 62999978888988999999999999829807998-------68999-8699999999738866788899999999--99
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHH-HHCCCCCCCCCCCCCCCCC-CC---CCCCEEEEEEECCCHHHHHHHHHHCCC
Q ss_conf 6788875348999999----9976677-4202476333456432555-87---564227899952111356888871798
Q gi|255764477|r 75 KLEILEKIVHPMVRMH----EKKILHD-LSCRGEKIVFFDTPLLFEK-RK---EYLFDAVVVVTCSFETQRERVLSRKKH 145 (199)
Q Consensus 75 ~l~~L~~iiHP~V~~~----~~~~i~~-~~~~~~~~vv~e~pLL~E~-~~---~~~~d~vi~V~a~~~~r~~Rl~~R~~~ 145 (199)
....+...+-|....- ..+++.. .-.++.. .=++...+... .+ .-.-|.+++++.|+++.++|+.+|+..
T Consensus 73 R~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~-~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~ 151 (208)
T COG0125 73 RAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGG-RGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL 151 (208)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCC
T ss_conf 99999999788762899999878313788853530-59998999999976547899988999948889999999832776
Q ss_pred -CHHHHHHH--H-HCCCCHHHHHHHC---CEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf -98999999--9-7299978999868---98998799989999999999999999
Q gi|255764477|r 146 -TEENFLFI--L-SKQMNEKDKISRA---DYVINTEGTIEAIEKETQKMLKYILK 193 (199)
Q Consensus 146 -s~e~~~~~--~-~~Q~~~~~k~~~a---D~vI~N~~s~~~l~~~i~~~~~~i~~ 193 (199)
+.-+.... . +......+..+.. =.+|+++.+++++...+.+++...+.
T Consensus 152 ~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 152 RDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 5515667789999999999999861877189998999979999999999998743
No 70
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.43 E-value=1.4e-06 Score=61.62 Aligned_cols=114 Identities=30% Similarity=0.347 Sum_probs=65.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000--0113566531000122211100011110012467888
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYE--AVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~--~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L 79 (199)
+|-+.|++||||+|.|+.|++ +|+..+++.++.++..... ....+.. .+..|.+ | |. ..+
T Consensus 1 ri~l~G~PGsGKgTqa~~La~~~~~~~is~gdlLR~~~~~~t~~g~~i~~----~~~~G~l--------v---p~--~i~ 63 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKE----YIDSGKL--------V---PD--EIV 63 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHH----HHHCCCC--------C---CH--HHH
T ss_conf 98998999998799999999997984676889999999749958999999----9987997--------7---89--999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-C------CCCCCC--CCCCCEEEEEEECCCHHHHHHHHHHC
Q ss_conf 7534899999999766774202476333456-4------325558--75642278999521113568888717
Q gi|255764477|r 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFDT-P------LLFEKR--KEYLFDAVVVVTCSFETQRERVLSRK 143 (199)
Q Consensus 80 ~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~-p------LL~E~~--~~~~~d~vi~V~a~~~~r~~Rl~~R~ 143 (199)
..++ ...+.... +..-+++|. | ..|+.. .....+.+++..+|.+.-.+|+..|.
T Consensus 64 ~~l~--------~~~l~~~~--~~~g~ilDGfPR~~~Qa~~l~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 64 IKLL--------KERLKKPD--CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred HHHH--------HHHHHCCC--CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCC
T ss_conf 9999--------99984765--438778747979899999999999739987889999668999999996467
No 71
>PRK13808 adenylate kinase; Provisional
Probab=98.41 E-value=1.9e-05 Score=54.59 Aligned_cols=164 Identities=21% Similarity=0.182 Sum_probs=101.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHH--HHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-7986999049999985000--01135665--31000122211100011110012467
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYE--AVDIIKKT--FPRSIQNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~--~~~~i~~~--fg~~i~~~~i~r~~l~~~vf~~~~~l 76 (199)
|.|.|-|.+||||+|.|..|.+ +|++.++..++-|+..... .-..+... -|..+.|
T Consensus 1 MrIIlLGPPGsGKGTQA~~L~~~~gi~hISTGDmLR~aI~~~T~LG~kaK~im~~G~LVPD------------------- 61 (297)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPD------------------- 61 (297)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCH-------------------
T ss_conf 9599978999985899999999869886758699999997599879999999976698888-------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-C-----------CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC-
Q ss_conf 8887534899999999766774202476333456-4-----------32555875642278999521113568888717-
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT-P-----------LLFEKRKEYLFDAVVVVTCSFETQRERVLSRK- 143 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~-p-----------LL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~- 143 (199)
.||-.+ +.+.+...... .-+++|. | +|-+. .-..|.||.+..|.+.-++|+..|-
T Consensus 62 ----eIVi~l----I~erL~~~d~~--~GfILDGFPRTv~QAEaLD~~L~~~--g~~LD~VIel~Vdd~~Lv~RI~~R~~ 129 (297)
T PRK13808 62 ----EVVVGI----ISDRIEQPDAA--NGFILDGFPRTVPQAEALDALLKDK--QLKLDAVVELRVNEGALLARVETRVA 129 (297)
T ss_pred ----HHHHHH----HHHHHCCCCCC--CCEEEECCCCCHHHHHHHHHHHHHC--CCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf ----999999----99996685667--8987228999989999999999818--99978689976788999999998888
Q ss_pred -----C------CCHHHHHHHHHC---CC-C-HHHHHHHCC-EEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----9------898999999972---99-9-789998689-8998799989999999999999999874
Q gi|255764477|r 144 -----K------HTEENFLFILSK---QM-N-EKDKISRAD-YVINTEGTIEAIEKETQKMLKYILKIND 196 (199)
Q Consensus 144 -----~------~s~e~~~~~~~~---Q~-~-~~~k~~~aD-~vI~N~~s~~~l~~~i~~~~~~i~~l~~ 196 (199)
| -++|.+..|+.. |+ | ..++.+..- ..|+--.++++...+|++++.-+-.-+.
T Consensus 130 e~~a~Ge~~R~DDn~E~~~kRL~~Y~~qT~Pl~~yY~e~~~L~~VDGm~~IDeVt~~I~r~l~a~~~~~~ 199 (297)
T PRK13808 130 EMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAANA 199 (297)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 7761488788899999999999999982012599987169578622866099999999999999840222
No 72
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.40 E-value=2.5e-06 Score=60.16 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=82.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 95999888866678999999997798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
|-+|-|||..|||||++.+.|+.+||.|+|- +--++ ...+.... . ..++++++-++.--+- +.+....+
T Consensus 1 m~lvIVTGlSGAGKsvAl~~lEDlGyycvDN--LPp~L-----lp~~~~~~-~-~~~~~~~kvAv~iDiR-s~~~~~~l- 69 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVLEDLGYYCVDN--LPPQL-----LPKLADLM-L-TLESRITKVAVVIDVR-SREFFGDL- 69 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCEEEECC--CCHHH-----HHHHHHHH-H-HCCCCCCEEEEEEECC-CCHHHHHH-
T ss_conf 9469995688876889999997458045358--99889-----99999997-6-3056775279999614-50317889-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC---CCCHH--HHHHHHH
Q ss_conf 534899999999766774202476333456432555875642278999521113568888717---98989--9999997
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK---KHTEE--NFLFILS 155 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~---~~s~e--~~~~~~~ 155 (199)
...+...+.++ ++ . -.|++.+|+.++-++|..+-+ .++.. ....+..
T Consensus 70 -----------~~~l~~l~~~~-~~---~-------------~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ 121 (286)
T COG1660 70 -----------EEVLDELKDNG-DI---D-------------PRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAK 121 (286)
T ss_pred -----------HHHHHHHHHCC-CC---C-------------CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf -----------99999998557-98---7-------------24999978645799887552002888766727899999
Q ss_pred -CCCCHHHHHHHCCEEEECCC-CHHHHHHHHHHHHHH
Q ss_conf -29997899986898998799-989999999999999
Q gi|255764477|r 156 -KQMNEKDKISRADYVINTEG-TIEAIEKETQKMLKY 190 (199)
Q Consensus 156 -~Q~~~~~k~~~aD~vI~N~~-s~~~l~~~i~~~~~~ 190 (199)
++ -..--+..||.||+++. +..+|+..+...+..
T Consensus 122 ERe-lL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 122 ERE-LLAPLREIADLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred HHH-HHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999-888788776627655668899999999999705
No 73
>pfam00406 ADK Adenylate kinase.
Probab=98.39 E-value=1.9e-06 Score=60.83 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=84.2
Q ss_pred EECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 888866678999999997-79869990499999850000--113566531000122211100011110012467888753
Q gi|255764477|r 6 LTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEA--VDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKI 82 (199)
Q Consensus 6 itG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~--~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~i 82 (199)
|-|.+||||+|.|+.|++ +|++++++.++.++....+. -..+... +..|.+- | +.+
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is~GdllR~~~~~~s~~g~~i~~~----i~~G~lv-----------p------d~i 59 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLSTGDLLRAEVKSGTELGKEAKEY----MDKGELV-----------P------DEV 59 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHH----HHCCCCC-----------C------HHH
T ss_conf 918898985999999999859906769999999986288799999999----9869954-----------3------099
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCC-C------CCCCCC--CCCCCEEEEEEECCCHHHHHHHHHHCCCCH--HHHH
Q ss_conf 4899999999766774202476333456-4------325558--756422789995211135688887179898--9999
Q gi|255764477|r 83 VHPMVRMHEKKILHDLSCRGEKIVFFDT-P------LLFEKR--KEYLFDAVVVVTCSFETQRERVLSRKKHTE--ENFL 151 (199)
Q Consensus 83 iHP~V~~~~~~~i~~~~~~~~~~vv~e~-p------LL~E~~--~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~--e~~~ 151 (199)
+..++. ..+.... ...-+|+|. | ..|+.. .....|.||+..||.++-++|+..|.--+. ..+.
T Consensus 60 ~~~l~~----~~l~~~~--~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~Vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~ 133 (186)
T pfam00406 60 VVGLVK----ERLEQND--CKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLTGRRIHPNSGRSYH 133 (186)
T ss_pred HHHHHH----HHHCCCC--CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999----9970745--5486687379898999999999997499877799997378999999976641556688156
Q ss_pred HHHHCCCCHHH---HHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99972999789---99868989987999899999999999999998
Q gi|255764477|r 152 FILSKQMNEKD---KISRADYVINTEGTIEAIEKETQKMLKYILKI 194 (199)
Q Consensus 152 ~~~~~Q~~~~~---k~~~aD~vI~N~~s~~~l~~~i~~~~~~i~~l 194 (199)
.. ...|... ....++.+-..+.+.+.+++.++.+.+...-+
T Consensus 134 ~~--~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv 177 (186)
T pfam00406 134 LE--FNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPV 177 (186)
T ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 66--789521364544422353789999999999999999998999
No 74
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.36 E-value=2.4e-06 Score=60.16 Aligned_cols=164 Identities=21% Similarity=0.284 Sum_probs=84.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC-CCE-EEEHHHHHHHHHH--HHH--HHH-HHHHHHHCCCCCC-CCCCCHHHHHHHHH
Q ss_conf 59998888666789999999977-986-9990499999850--000--113-5665310001222-11100011110012
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE-KIP-VISSDDIVDKLYH--YEA--VDI-IKKTFPRSIQNNK-VNKARLLGILQKSP 73 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~-G~~-v~~aD~i~~~l~~--~~~--~~~-i~~~fg~~i~~~~-i~r~~l~~~vf~~~ 73 (199)
+++.|+|..|+||||+++.|-+. ++. .+|+ -.|.-=. .++ |.. -.+.|-..+..+. +.......--++
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~--TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG-- 80 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSA--TTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG-- 80 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCEEEEEEE--CCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCC--
T ss_conf 39999899888889999999863493799985--26799998757802475779999998756874788777197324--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCCCCE-EEEEEECCCHHHHH-HHHHHCCCCH
Q ss_conf 4678887534899999999766774202476333456----4325558756422-78999521113568-8887179898
Q gi|255764477|r 74 AKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT----PLLFEKRKEYLFD-AVVVVTCSFETQRE-RVLSRKKHTE 147 (199)
Q Consensus 74 ~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~----pLL~E~~~~~~~d-~vi~V~a~~~~r~~-Rl~~R~~~s~ 147 (199)
..+. .+......+.+ +++|+ ++-...++. + ..|++.+|.-..++ |+..|+.-+.
T Consensus 81 T~~~----------------~ve~~~~~G~~-vildId~qGa~qvk~~~p---~~v~IFi~pPs~eeL~~RL~~Rgtds~ 140 (191)
T COG0194 81 TSRE----------------PVEQALAEGKD-VILDIDVQGALQVKKKMP---NAVSIFILPPSLEELERRLKGRGTDSE 140 (191)
T ss_pred CCHH----------------HHHHHHHCCCE-EEEEEEHHHHHHHHHHCC---CEEEEEECCCCHHHHHHHHHCCCCCCH
T ss_conf 8688----------------99999866990-899985399999997499---969999759999999999971599979
Q ss_pred HHHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9999999729997899986898998799989999999999999
Q gi|255764477|r 148 ENFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 148 e~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
+.+..|+..-..+-.-....||||.|+ +++....++..++..
T Consensus 141 e~I~~Rl~~a~~Ei~~~~~fdyvivNd-d~e~a~~~l~~ii~a 182 (191)
T COG0194 141 EVIARRLENAKKEISHADEFDYVIVND-DLEKALEELKSIILA 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECC-CHHHHHHHHHHHHHH
T ss_conf 999999999999998887599999895-499999999999999
No 75
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.32 E-value=1.3e-05 Score=55.62 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=82.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHH---HH---HH---H-----HHHHHHHHHHCCC--C----CC
Q ss_conf 95999888866678999999997-798699904999998---50---00---0-----1135665310001--2----22
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKL---YH---YE---A-----VDIIKKTFPRSIQ--N----NK 59 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l---~~---~~---~-----~~~i~~~fg~~i~--~----~~ 59 (199)
.++|+|=|..||||||||+.+++ +||..||+..+.|-+ .+ .. . .-.+..+..-.+. + -.
T Consensus 2 ~~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrsL~~~~d~~~E~~L~~L~~~~di~f~~~~~~~~v~ 81 (223)
T TIGR00017 2 KMIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRSLQNRVDLTDEDALLELISQLDIRFIPTAGEVKVF 81 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEE
T ss_conf 86376237764655789999998629502144328999999999887406885684889999863260442157750688
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 11100011110012467888753489999999976677420247633345643255587564227899952111356888
Q gi|255764477|r 60 VNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERV 139 (199)
Q Consensus 60 i~r~~l~~~vf~~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl 139 (199)
+|-.-+.+.+.++.-.-..=.--.||.||.......+.+.....+-+|.|.==+ -+--.+.-..-+|.+|+.++|-+|-
T Consensus 82 ~nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dGRDi-GTvVfPnA~~KiFLdAsve~RA~RR 160 (223)
T TIGR00017 82 LNGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADGRDI-GTVVFPNAELKIFLDASVEERAKRR 160 (223)
T ss_pred ECCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCC-CCEECCCCCCCEEECCCHHHHHHHH
T ss_conf 707771322068358999998723777999999999998751589758845523-7446788751324317878998876
Q ss_pred HHHC
Q ss_conf 8717
Q gi|255764477|r 140 LSRK 143 (199)
Q Consensus 140 ~~R~ 143 (199)
.+-.
T Consensus 161 ~~~~ 164 (223)
T TIGR00017 161 YKDL 164 (223)
T ss_pred HHHH
T ss_conf 9998
No 76
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.32 E-value=1.6e-05 Score=55.13 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=74.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
|.|.++|.+||||||+.+.|++ +|++.+|+|+.+-+-.+....+.. +..|+. -| +.+|
T Consensus 1 m~I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D~~Ie~~~G~sI~eIF-~~~GE~--------------~F------R~~E 59 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRISEVLDLQFIDMDEEIERREGRSVRRIF-EEDGEE--------------YF------RLKE 59 (488)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHH-HHHCHH--------------HH------HHHH
T ss_conf 94999899999877999999998397956477999998599888999-887889--------------99------9999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHCCC-----CHHHHH
Q ss_conf 53489999999976677420247633345--6432555875--64227899952111356888871798-----989999
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRKE--YLFDAVVVVTCSFETQRERVLSRKKH-----TEENFL 151 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~R~~~-----s~e~~~ 151 (199)
. +.+..... ..+.|+.- .+.+-+.+.. +.. .+|+..|+++...+|+..+ +- +.+.+.
T Consensus 60 ~-----------~~l~~l~~-~~~~ViatGGGavl~~~nr~~L~~~-~vV~L~a~~e~l~~R~~~~-~RPLL~~~~~rl~ 125 (488)
T PRK13951 60 K-----------ELLRELVE-RDNVVVATGGGVVIDPENRELLKKE-KTLFLYAPPEVLMERVTTE-NRPLLREGKERIR 125 (488)
T ss_pred H-----------HHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHCC-CEEEEECCHHHHHHHHCCC-CCCCCCCCHHHHH
T ss_conf 9-----------99999860-8996997698232899999999649-8899989999999983789-9988899489999
Q ss_pred HHHHCCCCHHHHHHHCCEEEECCCCHHHHHH
Q ss_conf 9997299978999868989987999899999
Q gi|255764477|r 152 FILSKQMNEKDKISRADYVINTEGTIEAIEK 182 (199)
Q Consensus 152 ~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~ 182 (199)
..++.--|.. ...++..+.+..+.+....
T Consensus 126 ~L~~~R~p~Y--~e~~~i~~~~~~~~~~~a~ 154 (488)
T PRK13951 126 EIWERRKQFY--TEFRGIDTSKLNEWETTAL 154 (488)
T ss_pred HHHHHHHHHH--HHHCCEECCCCCCHHHHHH
T ss_conf 9999876889--9854100468972666999
No 77
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.31 E-value=3.6e-05 Score=52.82 Aligned_cols=184 Identities=15% Similarity=0.178 Sum_probs=89.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH----HH--HH-HH---------------------HHHHHHH
Q ss_conf 5999888866678999999997-7986999049999985----00--00-11---------------------3566531
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLY----HY--EA-VD---------------------IIKKTFP 52 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~----~~--~~-~~---------------------~i~~~fg 52 (199)
.||+|-|..||||||+|+.+++ +||.++|+..+.|-+- .. +. .+ .+...|.
T Consensus 35 iIIAIDGPAGSGKSTVAk~lA~~LG~~yLDTGAmYRaval~aLr~~~~l~~e~~~~~~d~d~a~~~a~~~~a~~ld~~~~ 114 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTSYA 114 (863)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 89998689867889999999998299588748899999999976411222112456654012332210121123320125
Q ss_pred HC-----C--CCC--------CCCCCCHHHHHHHHHH----------HHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00-----0--122--------2111000111100124----------6788875-3489999999976677420247633
Q gi|255764477|r 53 RS-----I--QNN--------KVNKARLLGILQKSPA----------KLEILEK-IVHPMVRMHEKKILHDLSCRGEKIV 106 (199)
Q Consensus 53 ~~-----i--~~~--------~i~r~~l~~~vf~~~~----------~l~~L~~-iiHP~V~~~~~~~i~~~~~~~~~~v 106 (199)
.. + .|. .+.-..-...+|-|.. .-..... -.||.|+..+...-+.....+ -+
T Consensus 115 ~~~~~~~v~L~de~~~~~~~~~~~i~~~~~~v~lngedVt~~IRt~eV~~~AS~VAa~p~VR~aLv~~QR~~a~~~--Gv 192 (863)
T PRK12269 115 PLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGA--RV 192 (863)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC--CE
T ss_conf 5322222000211233222211342223552660775035555438888777777556999999999999885479--96
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC--CCCHHHHHH----HHHCCCCHHH--HHHHCC-EEEECCC-C
Q ss_conf 3456432555875642278999521113568888717--989899999----9972999789--998689-8998799-9
Q gi|255764477|r 107 FFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK--KHTEENFLF----ILSKQMNEKD--KISRAD-YVINTEG-T 176 (199)
Q Consensus 107 v~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~--~~s~e~~~~----~~~~Q~~~~~--k~~~aD-~vI~N~~-s 176 (199)
|.|.-=+ -+--...-+.-||++|+.+.|-+|..+.. ..+.+++.+ |..+-.+... .++-.| ++|+++. |
T Consensus 193 V~DGRDI-GTVVfPdA~lKIFLTAS~e~RA~RR~~Q~~~k~sleel~~dI~~RD~rDs~R~vAPLk~A~DAvlIDTS~LT 271 (863)
T PRK12269 193 VCEGRDL-TTVVFVDADLKCYLDASIEARVARRWAQGTSRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLT 271 (863)
T ss_pred EEECCCC-CCEECCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 8866878-655689998759997998999999986311458999999999987322154765788627862899789992
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 899999999999999
Q gi|255764477|r 177 IEAIEKETQKMLKYI 191 (199)
Q Consensus 177 ~~~l~~~i~~~~~~i 191 (199)
+++.- ++++.+.
T Consensus 272 IeEVv---EKIl~~~ 283 (863)
T PRK12269 272 IEEVC---ERIAREA 283 (863)
T ss_pred HHHHH---HHHHHHH
T ss_conf 99999---9999987
No 78
>PRK05439 pantothenate kinase; Provisional
Probab=98.31 E-value=3.9e-06 Score=58.92 Aligned_cols=130 Identities=22% Similarity=0.349 Sum_probs=66.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC--------CCEEEEHHHHHHHHHHHHHH---HHH-HHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 59998888666789999999977--------98699904999998500001---135-6653100012221110001111
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE--------KIPVISSDDIVDKLYHYEAV---DII-KKTFPRSIQNNKVNKARLLGIL 69 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~--------G~~v~~aD~i~~~l~~~~~~---~~i-~~~fg~~i~~~~i~r~~l~~~v 69 (199)
+||||+|..+.||||.|+.|+.+ .+..+..|-. ||-+... ..+ ++-||+++ |...|...+
T Consensus 87 fIIGIaGSVAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGF---LypNa~L~~rglm~RKGFPESY-----D~~~Ll~Fl 158 (312)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVDLVTTDGF---LYPNAELKERGLMKRKGFPESY-----DMRALLRFL 158 (312)
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCC---CCCCHHHHHCCCCCCCCCCCCC-----CHHHHHHHH
T ss_conf 89997620102628899999999950789994589934665---5786899876771247898544-----799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCC--------CCCCCEEEEEEECCCHHHHHHH
Q ss_conf 0012467888753489999999976677--42024763334564325558--------7564227899952111356888
Q gi|255764477|r 70 QKSPAKLEILEKIVHPMVRMHEKKILHD--LSCRGEKIVFFDTPLLFEKR--------KEYLFDAVVVVTCSFETQRERV 139 (199)
Q Consensus 70 f~~~~~l~~L~~iiHP~V~~~~~~~i~~--~~~~~~~~vv~e~pLL~E~~--------~~~~~d~vi~V~a~~~~r~~Rl 139 (199)
-.=+.....+..=++-+ ..-+.+.. ..-...+++++|.--.+... ..++||+-|||+|+++...+=.
T Consensus 159 ~~vKsG~~~v~aPvYSH---~~YDIvp~~~~~v~~PDILIvEGlNvLQ~~~~~~~~~~vSDffDfSIYvDA~~~~Ie~WY 235 (312)
T PRK05439 159 SDVKSGKPNVKAPVYSH---LIYDIVPGEYQTVDQPDILIVEGLNVLQTGDDDNHRLFVSDFFDFSIYVDADEDLIEKWY 235 (312)
T ss_pred HHHHCCCCCCCCEEECH---HHHHCCCCCEEEECCCCEEEEECHHHCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHH
T ss_conf 99976998766403336---776427997069737998999151214479767886552243138999608888999999
Q ss_pred HHH
Q ss_conf 871
Q gi|255764477|r 140 LSR 142 (199)
Q Consensus 140 ~~R 142 (199)
.+|
T Consensus 236 i~R 238 (312)
T PRK05439 236 IER 238 (312)
T ss_pred HHH
T ss_conf 999
No 79
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.30 E-value=4.2e-06 Score=58.71 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=87.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-CEEEEHHHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977-9-86999049999985--00001135665310001222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE-K-IPVISSDDIVDKLY--HYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~-G-~~v~~aD~i~~~l~--~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
..|.|+|..|+||||+++.+.+. . ..+++--...|.-= +.+-+-...+.|-..+.+|..--. -.++++.--.
T Consensus 3 ~LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~tTRp~e~~g~dy~fvs~eeF~~~i~~g~F~~~---w~~~g~~YG~- 78 (184)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALS---WHANGLYYGV- 78 (184)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCHHHHHHHHHCCCEEEE---EEECCCCCCC-
T ss_conf 099998998699999999998448998899987237899999968288799999999977982999---9866956670-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-E--EEEEEECCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 887534899999999766774202476333456432555875642-2--7899952111356888871798989999999
Q gi|255764477|r 78 ILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLF-D--AVVVVTCSFETQRERVLSRKKHTEENFLFIL 154 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~-d--~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~ 154 (199)
| ..+..+ ...+.. |++++..-.=......| + .++++.+|+++-.+||..|.--|++++.+|+
T Consensus 79 -------~---~~v~~~----l~~G~d-Vi~~g~~~~~~~~~~~~~~~~~~~~i~ps~~~L~~RL~~RGtEs~e~I~~RL 143 (184)
T PRK10078 79 -------G---IEIDLW----LHAGFD-VVVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARL 143 (184)
T ss_pred -------C---HHHHHH----HHCCCE-EEEECHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf -------7---899999----974994-9995179899999986798589999579999999999972999999999999
Q ss_pred HCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 729997899986898998799989999999999999
Q gi|255764477|r 155 SKQMNEKDKISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 155 ~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
+..... ....++||+|||++++--.++..++..
T Consensus 144 ~~A~~~---~~~d~~vInnDg~le~av~~l~~ii~~ 176 (184)
T PRK10078 144 ARAARY---QPQDCHTLNNDGSLRQSVDTLLTLLHQ 176 (184)
T ss_pred HHHCCC---CCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 961215---788999998998899999999999999
No 80
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.27 E-value=2.8e-06 Score=59.80 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=28.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCE--EEEHHHHHHHHHH
Q ss_conf 5999888866678999999997----7986--9990499999850
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIP--VISSDDIVDKLYH 40 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~--v~~aD~i~~~l~~ 40 (199)
.+|=+||.+||||||+|+.|+. .|.+ ++|.|.+- +++.
T Consensus 8 ~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR-~~~~ 51 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR-EIFG 51 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH-HHHC
T ss_conf 7999789999989999999999999759977998868999-8736
No 81
>PRK13973 thymidylate kinase; Provisional
Probab=98.26 E-value=3.3e-06 Score=59.34 Aligned_cols=182 Identities=16% Similarity=0.188 Sum_probs=85.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997----798699904999998500001135665310001222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
+-|.+-|.-||||||.++.|.+ .|++|+-. ++--+.+.-+.+.+.+-.. ....++ ...+..+--.....
T Consensus 4 ~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~v~~t----rePg~t~~~e~ir~~ll~~-~~~~~~--~~~e~lLfaA~R~e 76 (216)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT----REPGGSPGAEAIRHVLLSG-AAELYG--PAMEALLFAAARDD 76 (216)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE----ECCCCCCCHHHHHHHHHCC-CCCCCC--HHHHHHHHHHHHHH
T ss_conf 4999889999989999999999999779957994----0989984089999998466-657899--89999999999999
Q ss_pred HHHHHHHHHHHHH----HHHHHHH-HHCCCCCCCCCCCCCCCCCC----CCCCCEEEEEEECCCHHHHHHHHHHCCCCH-
Q ss_conf 8875348999999----9976677-42024763334564325558----756422789995211135688887179898-
Q gi|255764477|r 78 ILEKIVHPMVRMH----EKKILHD-LSCRGEKIVFFDTPLLFEKR----KEYLFDAVVVVTCSFETQRERVLSRKKHTE- 147 (199)
Q Consensus 78 ~L~~iiHP~V~~~----~~~~i~~-~~~~~~~~vv~e~pLL~E~~----~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~- 147 (199)
.+++.|-|....- ..+++.. .-.++..-- ++...+-... ....-|.+++.+.|+++.++|+.+|++...
T Consensus 77 h~~~~I~paL~~g~~VI~DRy~~Ss~AYQg~~~~-~~~~~l~~l~~~~~~~~~PDlti~LDv~~e~a~~R~~~R~~~~~~ 155 (216)
T PRK13973 77 HVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGN-VDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSETP 155 (216)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCC
T ss_conf 9999999999779989867862579999774278-898999999999967999998999818889999999983577630
Q ss_pred HHH-------HHHHHCCCCHHHHHHH---CC-EEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999-------9999729997899986---89-89987999899999999999999998
Q gi|255764477|r 148 ENF-------LFILSKQMNEKDKISR---AD-YVINTEGTIEAIEKETQKMLKYILKI 194 (199)
Q Consensus 148 e~~-------~~~~~~Q~~~~~k~~~---aD-~vI~N~~s~~~l~~~i~~~~~~i~~l 194 (199)
+.+ .++... .. .+... .. .+|+.+.|++++..+|-+++++.+..
T Consensus 156 dr~E~~~~~f~~kVr~--~Y-~~la~~~~~r~~vIDa~~s~eeV~~~I~~~v~~~L~e 210 (216)
T PRK13973 156 DRFEKEDLAFHEKRRE--AF-LQIAAQEPERCVVIDADASPEAVAAEIWAAVDQRLLE 210 (216)
T ss_pred CHHHHHHHHHHHHHHH--HH-HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 0255647999999999--99-9999859887899719999999999999999998621
No 82
>KOG3308 consensus
Probab=98.24 E-value=2.3e-06 Score=60.33 Aligned_cols=181 Identities=19% Similarity=0.268 Sum_probs=94.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC--CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH----HHHHH---
Q ss_conf 59998888666789999999977--9869990499999850000113566531000122211100011----11001---
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE--KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLG----ILQKS--- 72 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~--G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~----~vf~~--- 72 (199)
++|||.|-.+|||||+|+.|... |..+|+-|+.-+---+-+. ....+-..-.-..+|=+++.+ .+-+.
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v---~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~ 81 (225)
T KOG3308 5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEV---DYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA 81 (225)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHC---CCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99986424678776899999987368746402234675534211---237721110131420999987888885075556
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHH
Q ss_conf 24678887534899999-9997667742024763334564325558-756422789995211135688887179898999
Q gi|255764477|r 73 PAKLEILEKIVHPMVRM-HEKKILHDLSCRGEKIVFFDTPLLFEKR-KEYLFDAVVVVTCSFETQRERVLSRKKHTEENF 150 (199)
Q Consensus 73 ~~~l~~L~~iiHP~V~~-~~~~~i~~~~~~~~~~vv~e~pLL~E~~-~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~ 150 (199)
|+.++.+ |--.++. +...+ ....-+..++++|.=++|+.. ..+.||..|++.+|-+.-..|-..|.+..+..-
T Consensus 82 ~~ar~~~---v~~~~~~~~~~~~--q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~t 156 (225)
T KOG3308 82 PEAREHL---VSYANFEHYAQQF--QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPPDDT 156 (225)
T ss_pred CHHHHHH---HHHHHHHHHHHHC--CCCCCCCCEEEEECCEEEECCHHHHHHHHHEEEECCHHHHHHHHCCCCCCCCCCC
T ss_conf 3375654---1166777776422--7520027679983614772632664555210220439999876236544777877
Q ss_pred HHHHHCCCCHHHH-----HHHC--CEEEEC-CCCHHHHHHHHHHHHHH
Q ss_conf 9999729997899-----9868--989987-99989999999999999
Q gi|255764477|r 151 LFILSKQMNEKDK-----ISRA--DYVINT-EGTIEAIEKETQKMLKY 190 (199)
Q Consensus 151 ~~~~~~Q~~~~~k-----~~~a--D~vI~N-~~s~~~l~~~i~~~~~~ 190 (199)
=-..-.-||..++ ..++ |...-| +.|-+.+-.+|...+..
T Consensus 157 gyfd~~~~P~Y~~~~~~~~d~~~h~~~flngdvs~e~~~~~v~~~i~~ 204 (225)
T KOG3308 157 GYFDPVVWPHYEKNFEEARDRSRHDSLFLNGDVSEEKLDDKVNESINQ 204 (225)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCHHHHHHHHCC
T ss_conf 523576460898878888750344315552520132232565430100
No 83
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.20 E-value=1e-05 Score=56.26 Aligned_cols=40 Identities=38% Similarity=0.454 Sum_probs=35.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHY 41 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~ 41 (199)
|.|-+.|.+||||+|.|+.+++ +|++.+++.++.|+....
T Consensus 1 M~iillGpPGsGKgT~a~~l~~~~~~~hiStGdllR~~i~~ 41 (225)
T PTZ00088 1 MKIVLFGAPGVGKGTFAEILSKKEKLKHINMGNILRDEIKK 41 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHC
T ss_conf 97999899999879999999998799068789999999973
No 84
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.19 E-value=9.9e-06 Score=56.35 Aligned_cols=158 Identities=23% Similarity=0.289 Sum_probs=89.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHH--HHHHHHHHH--HHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-7986999049999985000--011356653--1000122211100011110012467
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYE--AVDIIKKTF--PRSIQNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~--~~~~i~~~f--g~~i~~~~i~r~~l~~~vf~~~~~l 76 (199)
|.|-|.|.+||||||.|+.|++ +|++.+|.|++-+.-.... --..++... |+.+.++
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~------------------ 62 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDE------------------ 62 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCHH------------------
T ss_conf 97999899999889999999997699785522011110032368999999998758950417------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---------CCCCCCEEEEEEECCCHHHHHHHHHHC---C
Q ss_conf 8887534899999999766774202476333456432555---------875642278999521113568888717---9
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK---------RKEYLFDAVVVVTCSFETQRERVLSRK---K 144 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~---------~~~~~~d~vi~V~a~~~~r~~Rl~~R~---~ 144 (199)
.++.+ +...+....... .+++...|-...- ......|.++....|.+.-+.|+..|. .
T Consensus 63 -i~~~~--------v~~rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~d 132 (178)
T COG0563 63 -IVNGL--------VKERLDEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVRED 132 (178)
T ss_pred -HHHHH--------HHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf -69979--------999997506577-29998998369999999999986399855260244778999999736654334
Q ss_pred CCHHHHHHHHHCCCCHHHH--HHHCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 8989999999729997899--9868989987999899999999999
Q gi|255764477|r 145 HTEENFLFILSKQMNEKDK--ISRADYVINTEGTIEAIEKETQKML 188 (199)
Q Consensus 145 ~s~e~~~~~~~~Q~~~~~k--~~~aD~vI~N~~s~~~l~~~i~~~~ 188 (199)
-+.+.+.+|+......... ..++ +.|+..+++++....+.+.+
T Consensus 133 d~~~~~~~R~~~y~~~~~pl~~~y~-~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 133 DNEETVKKRLKVYHEQTAPLIEYYS-VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCHHHHHHHHHHHH
T ss_conf 6789999999998754683477775-11467788999999999864
No 85
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=98.18 E-value=5.4e-06 Score=58.00 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=40.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHH--H--HHCCE-EEECCCCHHHHHHHH
Q ss_conf 4227899952111356888871798989999999729997899--9--86898-998799989999999
Q gi|255764477|r 121 LFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDK--I--SRADY-VINTEGTIEAIEKET 184 (199)
Q Consensus 121 ~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q~~~~~k--~--~~aD~-vI~N~~s~~~l~~~i 184 (199)
.-|.+++.++|+++..+|+.+|+..+..+.....-.+--.+.+ . ....+ +|+-+.+++++.++|
T Consensus 118 ~PDlti~Ldv~pe~~~~Ri~~R~~~~~~e~e~~~~~~kv~~~Y~~l~~~~~~~~~IDa~~~i~ev~~~I 186 (186)
T pfam02223 118 KPDLTFLLDVDPEVALKRLRRRGELDEFEFEQLDFLRKVRERYLELAKDDERILIIDASNSIEEVHEEI 186 (186)
T ss_pred CCCEEEEEECCHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHC
T ss_conf 999899983899999999986687562765179999999999999976999789987999999997049
No 86
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=98.16 E-value=2.8e-05 Score=53.53 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=28.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCEEEEHHHHHHH
Q ss_conf 5999888866678999999997----79869990499999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIPVISSDDIVDK 37 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~v~~aD~i~~~ 37 (199)
..|-+.|++|||||++++.+.. .|+.++|+|++-..
T Consensus 13 kai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~~ 52 (191)
T pfam06414 13 VAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRTY 52 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHH
T ss_conf 7999957998888999999987537899389713587887
No 87
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.15 E-value=2e-05 Score=54.42 Aligned_cols=28 Identities=36% Similarity=0.549 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEE
Q ss_conf 999888866678999999997-7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~ 30 (199)
+|.|-|.+||||||+++.|++ +|+.++-
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEEE
T ss_conf 98998888888999999999966994896
No 88
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.14 E-value=7.7e-05 Score=50.79 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=35.9
Q ss_pred EEEEEECCCHHHHHHHHHHC-CCCHHHHHHHHHCC-CCHH-HHHHHCCEEEECCCCH
Q ss_conf 78999521113568888717-98989999999729-9978-9998689899879998
Q gi|255764477|r 124 AVVVVTCSFETQRERVLSRK-KHTEENFLFILSKQ-MNEK-DKISRADYVINTEGTI 177 (199)
Q Consensus 124 ~vi~V~a~~~~r~~Rl~~R~-~~s~e~~~~~~~~Q-~~~~-~k~~~aD~vI~N~~s~ 177 (199)
-+|++.||.+.-.+|-.+|. .++++.+..+..+- .|.. -+=....|+|+.+.++
T Consensus 98 c~I~~~~p~e~c~~~N~~R~~~~~~e~i~~m~~r~E~P~~~nrWdsplf~i~~~~~~ 154 (249)
T TIGR03574 98 IIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDITIDTTKKI 154 (249)
T ss_pred EEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC
T ss_conf 999973999999998760689999999999999707999898655781684289888
No 89
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.12 E-value=3.9e-05 Score=52.65 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=27.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCC--EEEEHHHHHHHH
Q ss_conf 5999888866678999999997----798--699904999998
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKI--PVISSDDIVDKL 38 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~--~v~~aD~i~~~l 38 (199)
.+|=+||.+||||||+|+.|.+ .|. .++|.|.+-+.+
T Consensus 5 ~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~~l 47 (175)
T PRK00889 5 VTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRTNL 47 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 8999889899999999999999999869967997768888753
No 90
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.11 E-value=1.2e-05 Score=55.87 Aligned_cols=116 Identities=24% Similarity=0.276 Sum_probs=61.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
+|-+.|-.||||||+++.|++ +|++.+++|..-+..- .-+..-|.. .+|.....|+..
T Consensus 1 liiv~GvsGsGKSTia~~La~~lg~~~i~~D~~h~~~n------~~km~~G~p---------------L~d~dr~~wl~~ 59 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN------IAKMAAGIP---------------LNDEDRWPWLQA 59 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCCCHHH------HHHHHCCCC---------------CCCCCHHHHHHH
T ss_conf 98999189999999999999971995641543354768------999867999---------------885237899999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-------E-EEEEEECCCHHHHHHHHHHCC--CCHHH
Q ss_conf 34899999999766774202476333456432555875642-------2-789995211135688887179--89899
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLF-------D-AVVVVTCSFETQRERVLSRKK--HTEEN 149 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~-------d-~vi~V~a~~~~r~~Rl~~R~~--~s~e~ 149 (199)
+.. .........+.. +|++.--|-.. +...+ + ..|+..+|+++..+|+.+|.| ++...
T Consensus 60 l~~--------~~~~~~~~~g~~-vVv~cSaLk~~-yR~~l~~~~~~~~v~fi~L~~~~~~l~~Rl~~R~~hfm~~~l 127 (150)
T cd02021 60 LTD--------ALLAKLASAGEG-VVVACSALKRI-YRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHFMPADL 127 (150)
T ss_pred HHH--------HHHHHHHHCCCC-EEEEEHHHHHH-HHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCHHH
T ss_conf 999--------999999844998-79984332399-999999527689858999869999999999846357999899
No 91
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.09 E-value=6.8e-05 Score=51.10 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=26.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCC--EEEEHHHHHH
Q ss_conf 5999888866678999999997----798--6999049999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKI--PVISSDDIVD 36 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~--~v~~aD~i~~ 36 (199)
++|=+||..||||||+|+.|.+ .|. .++|.|.+-+
T Consensus 25 ~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~ 65 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRH 65 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 69998799999889999999999997599759977799987
No 92
>PRK08118 topology modulation protein; Reviewed
Probab=98.08 E-value=3e-06 Score=59.65 Aligned_cols=37 Identities=43% Similarity=0.443 Sum_probs=33.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHH
Q ss_conf 95999888866678999999997-79869990499999
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDK 37 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~ 37 (199)
|..|-|.|..||||||+|+-|++ .|+|++..|.+..+
T Consensus 1 M~rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w~ 38 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEEC
T ss_conf 96799988999879999999999889697964434766
No 93
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.07 E-value=0.00041 Score=46.21 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=89.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHH----HHHHHHH-HHHHHC--CCCCCCCCCCHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500----0011356-653100--0122211100011110012
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHY----EAVDIIK-KTFPRS--IQNNKVNKARLLGILQKSP 73 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~----~~~~~i~-~~fg~~--i~~~~i~r~~l~~~vf~~~ 73 (199)
++|=|.|..|+||||+|..|+. +|++.+=+-+.+++++-. +..+.+. ..|..+ .....-+... .+
T Consensus 93 liILigGtsGvGKSTlA~~LA~rLgI~~visTD~IREVmR~~~~~el~P~Lh~SSy~Awk~l~~~~~~~~~---~I---- 165 (306)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPWEEPD---HI---- 165 (306)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHHHCCCCCCCCCHH---HH----
T ss_conf 79998589988789999999997098834222169999985248301751322751310023678778657---99----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCEE--EEEEECCCHHHHHHHHHHCCCCH
Q ss_conf 467888753489999999976677420247633345----643255587564227--89995211135688887179898
Q gi|255764477|r 74 AKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFD----TPLLFEKRKEYLFDA--VVVVTCSFETQRERVLSRKKHTE 147 (199)
Q Consensus 74 ~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e----~pLL~E~~~~~~~d~--vi~V~a~~~~r~~Rl~~R~~~s~ 147 (199)
...+.=...|-+.| ...++.....+.. +|+| +|=++.....+.-+. .++...+++.-.+|+..|...+.
T Consensus 166 ~Gf~~Q~~~V~~gI----~aiI~Ra~~eg~s-lIIEGVHlvP~~i~~~~~~~~~vi~fll~i~dEe~H~~RF~~Ra~~~~ 240 (306)
T PRK04220 166 LGFERHVEPVLVGV----EAVIERALKEGIS-VIIEGVHIVPGFIKEKYLNMPNVFMFVLTLSDEETHKARFYARARVSK 240 (306)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHCCCC-EEEEEECCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCCCC
T ss_conf 99999999999999----9999999972996-899843037788777764388389999997888999999998504478
Q ss_pred -------HHHHHHHHCCCCHHHHHHHCCE-EEECCCCHHHHHHHHHH-HHHHHHHHHH
Q ss_conf -------9999999729997899986898-99879998999999999-9999999874
Q gi|255764477|r 148 -------ENFLFILSKQMNEKDKISRADY-VINTEGTIEAIEKETQK-MLKYILKIND 196 (199)
Q Consensus 148 -------e~~~~~~~~Q~~~~~k~~~aD~-vI~N~~s~~~l~~~i~~-~~~~i~~l~~ 196 (199)
+-|..+...|--.-++.+..+. +|+|. ++++.-.++-. +++.+.+..+
T Consensus 241 R~~~rYl~~f~~IR~IQ~yLv~~A~~~~vPiI~N~-~id~tv~~i~~~i~~r~~~~~~ 297 (306)
T PRK04220 241 RPAERYLKHFDEIREIQDYIVEKAKEHGVPVIENV-SIEETVDKILEIITERLSEINE 297 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98789999799999999999999888099810686-6899999999999999999874
No 94
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.06 E-value=1.5e-05 Score=55.21 Aligned_cols=163 Identities=21% Similarity=0.281 Sum_probs=79.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC--C------CEEEEHHHHHHHHHHHHHHH---HH-HHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 59998888666789999999977--9------86999049999985000011---35-6653100012221110001111
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE--K------IPVISSDDIVDKLYHYEAVD---II-KKTFPRSIQNNKVNKARLLGIL 69 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~--G------~~v~~aD~i~~~l~~~~~~~---~i-~~~fg~~i~~~~i~r~~l~~~v 69 (199)
++||+.|.+|+||||.|.+|+.+ . +.++-.|-- +|.....+ .+ .+-||+.+ |...+...+
T Consensus 83 fIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF---hy~n~~L~~~glm~rKGfPeSy-----D~~~ll~fl 154 (283)
T COG1072 83 FIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF---HYPNAVLDERGLMARKGFPESY-----DVAALLRFL 154 (283)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC---CCCHHHHHHCCCCCCCCCCCCC-----CHHHHHHHH
T ss_conf 79996057665577899999999963889873378714545---4676775221220018998535-----689999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCC-----CCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 00124678-887534899999999766774--2024763334564325558-----756422789995211135688887
Q gi|255764477|r 70 QKSPAKLE-ILEKIVHPMVRMHEKKILHDL--SCRGEKIVFFDTPLLFEKR-----KEYLFDAVVVVTCSFETQRERVLS 141 (199)
Q Consensus 70 f~~~~~l~-~L~~iiHP~V~~~~~~~i~~~--~~~~~~~vv~e~pLL~E~~-----~~~~~d~vi~V~a~~~~r~~Rl~~ 141 (199)
..++ --+.+-.|---..+...+... -....+++++|.--++-++ ..++||+.|+|+||.+...+|+.+
T Consensus 155 ----~~vK~~~~~v~aPvysh~~yD~vp~~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~ 230 (283)
T COG1072 155 ----SDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIE 230 (283)
T ss_pred ----HHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf ----9996599851243233110256788502058998899915266258985111256221799936999999999999
Q ss_pred HC---CCCHHHHHHHH---HCCCCHHHH--HHHCCEEEECCCC
Q ss_conf 17---98989999999---729997899--9868989987999
Q gi|255764477|r 142 RK---KHTEENFLFIL---SKQMNEKDK--ISRADYVINTEGT 176 (199)
Q Consensus 142 R~---~~s~e~~~~~~---~~Q~~~~~k--~~~aD~vI~N~~s 176 (199)
|- |.+..+..... ..+++..+- ...+++.+.|-..
T Consensus 231 Rfl~~g~~a~~~~~~~~~~~~~l~~~~a~~~a~~~w~~in~~n 273 (283)
T COG1072 231 RFLKFGLTAFEDPASYFHNYAPLSEREAIESARAIWDNINLLN 273 (283)
T ss_pred HHHHHCCCHHHCHHHHHHCCCCCHHHHHHHHHHHCCEEEHHHH
T ss_conf 9985044343262667532574227999985230131211020
No 95
>PRK13974 thymidylate kinase; Provisional
Probab=98.05 E-value=0.00016 Score=48.82 Aligned_cols=178 Identities=20% Similarity=0.215 Sum_probs=80.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCC-----EEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 5999888866678999999997----798-----6999049999985000011356653100012221110001111001
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKI-----PVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKS 72 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~-----~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~ 72 (199)
+.|.+-|.=||||||.++.|++ .|+ .++..-+- -+...-+.+.+.+...-. ......+.+..+--
T Consensus 4 ~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~~reP----g~t~~g~~ir~~l~~~~~--~~~~~~~~e~lLf~ 77 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREP----GGTLLGKSLRELLLDTSK--DNSPSPLAELLLYA 77 (212)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC----CCCCHHHHHHHHHHCCCC--CCCCCHHHHHHHHH
T ss_conf 199988999998999999999999865875358615771499----998069999999806654--56888799999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHH-HHHCCC-CCCCCCCCCCCC--CCC--CCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 2467888753489999999----97667-742024-763334564325--558--7564227899952111356888871
Q gi|255764477|r 73 PAKLEILEKIVHPMVRMHE----KKILH-DLSCRG-EKIVFFDTPLLF--EKR--KEYLFDAVVVVTCSFETQRERVLSR 142 (199)
Q Consensus 73 ~~~l~~L~~iiHP~V~~~~----~~~i~-~~~~~~-~~~vv~e~pLL~--E~~--~~~~~d~vi~V~a~~~~r~~Rl~~R 142 (199)
......++..|-|....-. .++.. ..-.++ ..-+-.+ .+. +.- ....-|.+++.+.|+++.++|...|
T Consensus 78 AdR~e~~~~~I~paL~~G~iVI~DRY~~St~AYQg~~~g~~~~--~i~~l~~~~~~~~~PDlt~~LDv~~e~a~~R~~~~ 155 (212)
T PRK13974 78 ADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLE--LIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR 155 (212)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHH--HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCC
T ss_conf 9999999999999983799999788323599998862699999--99999998747999998999769758899988477
Q ss_pred CCCCH-----HHHHHHHHCCCCHHHHHHHCC-EEEECCCCHHHHHHHHHHHHHH
Q ss_conf 79898-----999999972999789998689-8998799989999999999999
Q gi|255764477|r 143 KKHTE-----ENFLFILSKQMNEKDKISRAD-YVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 143 ~~~s~-----e~~~~~~~~Q~~~~~k~~~aD-~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
.. +. .++..+... ....-.+..+ .+|+-+.+++++..+|.+.+..
T Consensus 156 ~~-dr~e~e~~~f~~kVr~--~y~~la~~~~~~~IDa~~~ieeV~~~I~~~i~~ 206 (212)
T PRK13974 156 KP-DRIEAEGIEFLERVAE--GFALIAEERNWKVISADQSIETISNEIKETLLN 206 (212)
T ss_pred CC-CCHHCCCHHHHHHHHH--HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 63-4310161999999999--999984739879998999999999999999999
No 96
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=0.00022 Score=47.93 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=74.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-C-CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 95999888866678999999997-7-986999049999985000011356653100012221110001111001246788
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-E-KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~-G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~ 78 (199)
|+++.+||-+|+||||++++..+ . +++++|..++--+.-...+.- -+|+.++..-- +....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glv--------------e~rD~~Rklp~---e~Q~~ 66 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLV--------------EHRDEMRKLPL---ENQRE 66 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHCCC--------------CCHHHHHCCCH---HHHHH
T ss_conf 55999975798872669999998775220000769999999983872--------------02898852988---89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCCCCCCCC------CCEEEEEEECCCHHHHHHHHHH--CC
Q ss_conf 87534899999999766774202476333456------4325558756------4227899952111356888871--79
Q gi|255764477|r 79 LEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT------PLLFEKRKEY------LFDAVVVVTCSFETQRERVLSR--KK 144 (199)
Q Consensus 79 L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~------pLL~E~~~~~------~~d~vi~V~a~~~~r~~Rl~~R--~~ 144 (199)
| +...-+.+.+... . +++|- |.=|=-++.. .-|.++.+.|+++....|-++- +.
T Consensus 67 l--------q~~Aa~rI~~~~~---~-iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~ 134 (189)
T COG2019 67 L--------QAEAAKRIAEMAL---E-IIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRD 134 (189)
T ss_pred H--------HHHHHHHHHHHHC---C-EEEECCCEECCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCC
T ss_conf 9--------9999999997420---6-58732411147876677883999975298879999379899999872261204
Q ss_pred CCHHHHHHHHHCC-CCHHHHHHH-----CC-EEEECC-CCHHHHHHHHHHHH
Q ss_conf 8989999999729-997899986-----89-899879-99899999999999
Q gi|255764477|r 145 HTEENFLFILSKQ-MNEKDKISR-----AD-YVINTE-GTIEAIEKETQKML 188 (199)
Q Consensus 145 ~s~e~~~~~~~~Q-~~~~~k~~~-----aD-~vI~N~-~s~~~l~~~i~~~~ 188 (199)
-+.+....+-.+| ++...-..+ |. .|+.|. +.++.-...+-.++
T Consensus 135 Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l 186 (189)
T COG2019 135 RDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELL 186 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6621089999999999999999999708848997478888788899999998
No 97
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.97 E-value=0.0003 Score=47.05 Aligned_cols=175 Identities=13% Similarity=0.164 Sum_probs=86.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHH--HHHH-HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-79869990499999850000--1135-665310001222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEA--VDII-KKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~--~~~i-~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
.+|=|.|-.|+||||+|..|+. +|++.+=+-+..|+++-.-. .+.+ ...|..+-.-++-..+. ++ ....
T Consensus 4 ~iiligG~sGvGKStla~~lA~rlgi~~visTD~IRevlR~~i~~eP~L~~Ssy~A~~~~~~~~~~~---ii----~Gf~ 76 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDEN---IV----KGYL 76 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH---HH----HHHH
T ss_conf 7999857998878999999999749975534347999999866887400330467988708965278---99----9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCC-----H-
Q ss_conf 88753489999999976677420247633345----6432555875642278999521113568888717989-----8-
Q gi|255764477|r 78 ILEKIVHPMVRMHEKKILHDLSCRGEKIVFFD----TPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHT-----E- 147 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e----~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s-----~- 147 (199)
.=...|-|.|..-+.+.+. .+.. +|+| +|=+.+....+..-...+...+++.-.+|+..|...+ .
T Consensus 77 ~q~~~V~~gi~avi~Ra~~----eg~s-lIIEGVHlvP~~i~~~~~~~~~~~~l~i~dee~H~~Rf~~R~~~~~~~~p~~ 151 (197)
T PRK12339 77 DQARAIMPGINRVIRRALL----NGED-LVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGK 151 (197)
T ss_pred HHHHHHHHHHHHHHHHHHH----CCCC-EEEEEEEECHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999999999999997----3997-7998521177887788765958999997888999999999854312677166
Q ss_pred ---HHHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHH
Q ss_conf ---99999997299978999868989987999899999999999
Q gi|255764477|r 148 ---ENFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKML 188 (199)
Q Consensus 148 ---e~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~ 188 (199)
+.+..+...|--.-++.+..+.-+.+|.+++..-+.+-+++
T Consensus 152 ry~~~f~~IR~Iq~ylv~~A~~~~ipvI~n~~~d~s~~~i~~~i 195 (197)
T PRK12339 152 RLAEHLPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHH
T ss_conf 99998999999999999988873998553772899999999984
No 98
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.94 E-value=5.1e-05 Score=51.89 Aligned_cols=138 Identities=24% Similarity=0.230 Sum_probs=68.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH----CCCEEEEHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 95999888866678999999997----7986999049999985-000011356653100012221110001111001246
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK----EKIPVISSDDIVDKLY-HYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAK 75 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~----~G~~v~~aD~i~~~l~-~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~ 75 (199)
|+.|-+||-+||||||.|+-|++ .++.+++...=+...+ ..+.....++.+-+.+ +++..+
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-----~ks~~r--------- 66 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-----LKSVER--------- 66 (261)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCHHHHHHHHHH-----HHHHHH---------
T ss_conf 956998269998801789999999997200112132014541233132403799999999-----888999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC-CC
Q ss_conf 788875348999999997667742024763334564---------32555875642278999521113568888717-98
Q gi|255764477|r 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTP---------LLFEKRKEYLFDAVVVVTCSFETQRERVLSRK-KH 145 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~p---------LL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~-~~ 145 (199)
.+..+ .+ ..+|++|.- |.-|++-.+.-.-||++.||.++-++|-.+|. .+
T Consensus 67 ------lldSa-----------lk---n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepi 126 (261)
T COG4088 67 ------LLDSA-----------LK---NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPI 126 (261)
T ss_pred ------HHHHH-----------HC---CEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCC
T ss_conf ------99998-----------63---64999706328889999999999863786599997268899988602479999
Q ss_pred CHHHHHHHHHCCC-CH-HHHHHHCCEEEE
Q ss_conf 9899999997299-97-899986898998
Q gi|255764477|r 146 TEENFLFILSKQM-NE-KDKISRADYVIN 172 (199)
Q Consensus 146 s~e~~~~~~~~Q~-~~-~~k~~~aD~vI~ 172 (199)
+.|-+.+++.+-- |. ..+=..+-++|+
T Consensus 127 p~Evl~qly~RfEePn~~~rWDspll~id 155 (261)
T COG4088 127 PEEVLRQLYDRFEEPNPDRRWDSPLLVID 155 (261)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 89999999996149997765567637886
No 99
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.93 E-value=2.8e-05 Score=53.50 Aligned_cols=113 Identities=21% Similarity=0.242 Sum_probs=71.5
Q ss_pred EEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHH--HHHHHHH--HH--HHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99888866678999999997-7986999049999985000--0113566--53--1000122211100011110012467
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYE--AVDIIKK--TF--PRSIQNNKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~--~~~~i~~--~f--g~~i~~~~i~r~~l~~~vf~~~~~l 76 (199)
+-|-|-|||||.|.|+.+++ +|++.||+.++-|+..... .=.++++ .. |+.|.|.
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~gl~HISTGDllR~~~~~~T~LG~~~k~y~y~~~G~LVPD~------------------ 63 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLGLPHISTGDLLRAAVKAGTPLGKKAKEYNYMDKGELVPDE------------------ 63 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHH------------------
T ss_conf 46755989876679999998608850202589999987079778987326720037757789------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCC-------CCCCCCC---CCCCCEEEEEEECCC-HHHHHHHHH
Q ss_conf 8887534899999999766774202----476333456-------4325558---756422789995211-135688887
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCR----GEKIVFFDT-------PLLFEKR---KEYLFDAVVVVTCSF-ETQRERVLS 141 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~----~~~~vv~e~-------pLL~E~~---~~~~~d~vi~V~a~~-~~r~~Rl~~ 141 (199)
-++.+ +++.+...... ..+-+++|. |-.++.- .....|.||.+.-|. ++-++|+..
T Consensus 64 -~v~~l--------v~~rl~~~~~~~~~~~~~GfILDGfPRT~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R~~g 134 (232)
T TIGR01351 64 -IVNQL--------VKERLQQNPDCVSLKSENGFILDGFPRTLSQAEALDAMLKELGLPIDAVIELDVPDLEELVERITG 134 (232)
T ss_pred -HHHHH--------HHHHHHCCCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHC
T ss_conf -99999--------999974560001101068626638888789999999999861898417888535879999997732
Q ss_pred HC
Q ss_conf 17
Q gi|255764477|r 142 RK 143 (199)
Q Consensus 142 R~ 143 (199)
|.
T Consensus 135 R~ 136 (232)
T TIGR01351 135 RR 136 (232)
T ss_pred CC
T ss_conf 73
No 100
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=97.90 E-value=3.2e-06 Score=59.46 Aligned_cols=148 Identities=22% Similarity=0.328 Sum_probs=73.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CC--CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH--HHHHH
Q ss_conf 5999888866678999999997----79--8699904999998500001135665310001222111000111--10012
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EK--IPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGI--LQKSP 73 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G--~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~--vf~~~ 73 (199)
.+|=+||-.||||||+|+.|++ +| ..++|-|.|-|.|+..=++..- |-.-|-.++++. .|.+.
T Consensus 20 ~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~LDGDnvR~gL~~dLGFS~~---------DR~eNIRRigEVa~L~~~~ 90 (187)
T TIGR00455 20 VVLWLTGLSGSGKSTIANALEKKLEKKGYRVYVLDGDNVRHGLNKDLGFSEE---------DRKENIRRIGEVAKLLVRN 90 (187)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCHH---------HHCCCCCEEHHHHHHHHHC
T ss_conf 8985116885635799999999999669749997586342477888888856---------7056883532646777647
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHH------HHHCCC
Q ss_conf 4678887534899--99999976677420247633345643255587564227899952111356888------871798
Q gi|255764477|r 74 AKLEILEKIVHPM--VRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERV------LSRKKH 145 (199)
Q Consensus 74 ~~l~~L~~iiHP~--V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl------~~R~~~ 145 (199)
-.-.|-+.|=|+ .+...+..+.+. .+=|+| |||.||.+++.+|= ++|.|
T Consensus 91 -G~i~ltsfISPyR~~R~~vR~~~~~~-----Gl~F~E----------------vfv~~PL~vcE~RDPKGLYkKAR~G- 147 (187)
T TIGR00455 91 -GVIVLTSFISPYRADRQMVRELIEEG-----GLEFIE----------------VFVKCPLEVCEQRDPKGLYKKARNG- 147 (187)
T ss_pred -CEEEEEEEECCCHHHHHHHHHHHHCC-----CEEEEE----------------EECCCCHHHHCCCCCCCHHHHHHCC-
T ss_conf -93899842177666789998875405-----736899----------------7217886863268985023886468-
Q ss_pred CHHHHHHHHHCCCCHHHHHHHCCEEEECCC-CHHHHHHHHH
Q ss_conf 989999999729997899986898998799-9899999999
Q gi|255764477|r 146 TEENFLFILSKQMNEKDKISRADYVINTEG-TIEAIEKETQ 185 (199)
Q Consensus 146 s~e~~~~~~~~Q~~~~~k~~~aD~vI~N~~-s~~~l~~~i~ 185 (199)
-...|--+.+ .+|-=.-+|++++.+. +++++.+++-
T Consensus 148 EIk~FTGID~----pYE~P~~Pe~~~~tD~~~~~~~~~~i~ 184 (187)
T TIGR00455 148 EIKGFTGIDS----PYEAPENPEVVLDTDQEDVEECVQQII 184 (187)
T ss_pred CCCCCCCCCC----CCCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 8865678788----778699870688377233888999999
No 101
>PRK07261 topology modulation protein; Provisional
Probab=97.84 E-value=1.2e-05 Score=55.74 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=56.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
|.|-|.|..||||||+|+-|++ .|+|++..|.+.. .++-.+.-. .+..+.++
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w---~p~w~~~~~------------------------~e~~~~~~ 53 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHF---SSNWQERDD------------------------DDMIADIS 53 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEE---CCCCEECCH------------------------HHHHHHHH
T ss_conf 989998899986899999999987979797022788---899988889------------------------99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 53489999999976677420247633345643---255587564227899952111356888871
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFDTPL---LFEKRKEYLFDAVVVVTCSFETQRERVLSR 142 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pL---L~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R 142 (199)
. ++. +.. =|+|.-. +++. ....+|.||+++-|..+.+-|+.+|
T Consensus 54 ~------------~~~-----~~~-WIiDGny~~~~~~~-rl~~aD~iI~Ld~p~~~~l~rvikR 99 (171)
T PRK07261 54 N------------FLL-----KQD-WIIEGNYSNCLYEE-RMAEADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred H------------HHH-----CCC-EEEECCCCCHHHHH-HHHHCCEEEEECCCHHHHHHHHHHH
T ss_conf 9------------984-----898-79947851247776-7977999999858499999999999
No 102
>KOG3354 consensus
Probab=97.81 E-value=0.00011 Score=49.81 Aligned_cols=149 Identities=22% Similarity=0.307 Sum_probs=73.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997-7986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
+|.+.|-.||||||+++.|.+ +|++.+++|+.-- ++..+++.+ .+-++|.+.+-||++
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp----~~NveKM~~-----------------GipLnD~DR~pWL~~ 72 (191)
T KOG3354 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHP----PANVEKMTQ-----------------GIPLNDDDRWPWLKK 72 (191)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCC----HHHHHHHHC-----------------CCCCCCCCCCHHHHH
T ss_conf 59998358877445999999985886245555798----788998836-----------------998885321179999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-------CC---CCCCCCCCE----EEEEEECCCHHHHHHHHHHCC--C
Q ss_conf 3489999999976677420247633345643-------25---558756422----789995211135688887179--8
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPL-------LF---EKRKEYLFD----AVVVVTCSFETQRERVLSRKK--H 145 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pL-------L~---E~~~~~~~d----~vi~V~a~~~~r~~Rl~~R~~--~ 145 (199)
+---. ...-..+..+|+.=.+| |- +.+-.-.|+ ..|+..++.++..+|+.+|.| +
T Consensus 73 i~~~~---------~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM 143 (191)
T KOG3354 73 IAVEL---------RKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM 143 (191)
T ss_pred HHHHH---------HHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 99999---------987632781899728888999999973211478667864058886330429999999840666668
Q ss_pred CHHHHHHHH-HCCCCHHHHHHHCCEE-EE-CCCCHHHHHHHH
Q ss_conf 989999999-7299978999868989-98-799989999999
Q gi|255764477|r 146 TEENFLFIL-SKQMNEKDKISRADYV-IN-TEGTIEAIEKET 184 (199)
Q Consensus 146 s~e~~~~~~-~~Q~~~~~k~~~aD~v-I~-N~~s~~~l~~~i 184 (199)
+.+..+.-. .-|.|.-.. .|+| |. ++.+.++.-..|
T Consensus 144 p~~lleSQf~~LE~p~~~e---~div~isv~~~~~e~iv~tI 182 (191)
T KOG3354 144 PADLLESQFATLEAPDADE---EDIVTISVKTYSVEEIVDTI 182 (191)
T ss_pred CHHHHHHHHHHCCCCCCCC---CCEEEEEECCCCHHHHHHHH
T ss_conf 8789998887526999982---46688860347899999999
No 103
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00034 Score=46.72 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=83.9
Q ss_pred CCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8866678999999997-798699904999998500001135665310001222111000111100124678887534899
Q gi|255764477|r 8 GSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKIVHPM 86 (199)
Q Consensus 8 G~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~iiHP~ 86 (199)
|-.|||||||+..+++ +|++.++.|+.- -+..+.++. -| +=++|....-||+++
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlH----p~aNi~KM~--~G---------------iPL~DdDR~pWL~~l---- 56 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLH----PPANIEKMS--AG---------------IPLNDDDRWPWLEAL---- 56 (161)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEECCCCCC----CHHHHHHHH--CC---------------CCCCCCHHHHHHHHH----
T ss_conf 87765777999999998098233356569----988999872--79---------------989841124799999----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCE--EEEEEECCCHHHHHHHHHHCC--CCHHHHHHHHHC-C
Q ss_conf 99999976677420247633345643255587----56422--789995211135688887179--898999999972-9
Q gi|255764477|r 87 VRMHEKKILHDLSCRGEKIVFFDTPLLFEKRK----EYLFD--AVVVVTCSFETQRERVLSRKK--HTEENFLFILSK-Q 157 (199)
Q Consensus 87 V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~----~~~~d--~vi~V~a~~~~r~~Rl~~R~~--~s~e~~~~~~~~-Q 157 (199)
..+......++...++.=.+| ...+ ..-+. ..|+...+.++..+|+.+|.| ++......-.+. +
T Consensus 57 -----~~~~~~~~~~~~~~vi~CSAL--Kr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE 129 (161)
T COG3265 57 -----GDAAASLAQKNKHVVIACSAL--KRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLE 129 (161)
T ss_pred -----HHHHHHHHCCCCCEEEECHHH--HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf -----999998642798169962788--7889999854599738999638899999998760567788899998999835
Q ss_pred CCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 997899986898998799989999999999999
Q gi|255764477|r 158 MNEKDKISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 158 ~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
.|..+- --.+|+.+.+++++-.++...+..
T Consensus 130 ~P~~de---~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 130 EPGADE---DVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred CCCCCC---CEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 899998---879864899989999999999861
No 104
>PRK13975 thymidylate kinase; Provisional
Probab=97.72 E-value=0.0005 Score=45.66 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=76.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC-CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977-98699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~-G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
+-|.+=|.-||||||.++.|++. ...+ .++-.+.+.-+.+.+.. .+..++.....-....|. .+.++
T Consensus 3 kfI~fEGiDGsGKsTq~~lL~~~L~~~~------t~epg~t~~ge~IR~~l----~~~~~~~~~~~LLfaA~R--~~~~~ 70 (198)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAKF------TFEPTDGKIGKSIREIL----SGSECQKETLALLFAADR--VEHVS 70 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCE------EECCCCCCHHHHHHHHH----HCCCCCHHHHHHHHHHHH--HHHHH
T ss_conf 8899989988869999999999738748------88979984479999998----268998599999999999--99999
Q ss_pred HHHHHHHHHH---HHHHHHH-HHCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHH--HHHHH
Q ss_conf 5348999999---9976677-420247633345643255-587564227899952111356888871798989--99999
Q gi|255764477|r 81 KIVHPMVRMH---EKKILHD-LSCRGEKIVFFDTPLLFE-KRKEYLFDAVVVVTCSFETQRERVLSRKKHTEE--NFLFI 153 (199)
Q Consensus 81 ~iiHP~V~~~---~~~~i~~-~~~~~~~~vv~e~pLL~E-~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e--~~~~~ 153 (199)
.|..|+ ... ..+++.. .-.++..- ++...+.. +.+...-|.+++.++|++..++|+..|+....| ++..+
T Consensus 71 ~i~~~l-~~~~VI~DRy~~St~AYQ~~~g--~~~~~i~~l~~~~~~PDlt~~LDi~~e~~l~R~~~r~~~~~e~~~f~~k 147 (198)
T PRK13975 71 EIEEDL-KKSHVVSDRYVYSSIVYQSSQG--IDKDFIYSINDYAKIPDLVVLLDVDLEEALKRMESREKEIFEKIEIQKK 147 (198)
T ss_pred HHHHHH-HCCCEEEECCCCHHHHHHHHCC--CCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999998-6898897276123999856139--9999999999679999989997398999999876357315542999999
Q ss_pred HHC-------CCCHHHHHHHCCEEEECC-CCHHHHHHHHHHHHHH
Q ss_conf 972-------999789998689899879-9989999999999999
Q gi|255764477|r 154 LSK-------QMNEKDKISRADYVINTE-GTIEAIEKETQKMLKY 190 (199)
Q Consensus 154 ~~~-------Q~~~~~k~~~aD~vI~N~-~s~~~l~~~i~~~~~~ 190 (199)
... +-|........=.+|+.. -|+++...+|-+.+..
T Consensus 148 Vr~~yl~la~~~~~r~~~~~~~i~Id~~~ksieeV~~~I~~~i~~ 192 (198)
T PRK13975 148 IKEGYYNLINSENEKFMPKYGFIVIDTTSKSIEEVFNEILNAILD 192 (198)
T ss_pred HHHHHHHHHHHCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999999999748231001257189989999999999999999998
No 105
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=97.61 E-value=0.00033 Score=46.85 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=26.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCC--EEEEHHHHHH
Q ss_conf 5999888866678999999997----798--6999049999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKI--PVISSDDIVD 36 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~--~v~~aD~i~~ 36 (199)
.+|=+||.+||||||+|+.|.+ .|. .++|.|.+-+
T Consensus 3 ~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~ 43 (157)
T pfam01583 3 CTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRH 43 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHC
T ss_conf 89998898999999999999999997599779976887750
No 106
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.61 E-value=0.00019 Score=48.29 Aligned_cols=34 Identities=35% Similarity=0.579 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CC--CEEEEHHHHHH
Q ss_conf 999888866678999999997----79--86999049999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EK--IPVISSDDIVD 36 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G--~~v~~aD~i~~ 36 (199)
||=+||..||||||+|+.|.+ +| ..++|.|++-+
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 9898799999999999999999998699759977488997
No 107
>PRK07933 thymidylate kinase; Validated
Probab=97.57 E-value=0.0016 Score=42.52 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=42.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCH----H------HHHHHHHCCCCHHHHHHHCC-----EEEECCCCHHHHHHHHH
Q ss_conf 422789995211135688887179898----9------99999972999789998689-----89987999899999999
Q gi|255764477|r 121 LFDAVVVVTCSFETQRERVLSRKKHTE----E------NFLFILSKQMNEKDKISRAD-----YVINTEGTIEAIEKETQ 185 (199)
Q Consensus 121 ~~d~vi~V~a~~~~r~~Rl~~R~~~s~----e------~~~~~~~~Q~~~~~k~~~aD-----~vI~N~~s~~~l~~~i~ 185 (199)
.-|.+++++.|.++..+|+..|.+... + .+..+... -.......+ .||+-++|+++...+|.
T Consensus 132 ~PDlti~lDv~~e~a~~R~~~R~~~~~~~~~Dr~E~~~~f~~rVr~---~y~~lA~~~~p~R~~vIDa~~~~e~V~~~I~ 208 (213)
T PRK07933 132 VPDLQVLLDVPAELAAERARRRAARDADRARDAYERDDGLQQRTGA---VYAELAARGWGGPWLVVDPDVDPAALAARLA 208 (213)
T ss_pred CCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 9986889538999999999832456666421302304899999999---9999997257998899819999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|255764477|r 186 KML 188 (199)
Q Consensus 186 ~~~ 188 (199)
..+
T Consensus 209 ~~l 211 (213)
T PRK07933 209 AAL 211 (213)
T ss_pred HHH
T ss_conf 874
No 108
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=97.54 E-value=0.00043 Score=46.12 Aligned_cols=150 Identities=16% Similarity=0.234 Sum_probs=83.2
Q ss_pred EEEECCCCCCHHHHHHHHHH-CC-----CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99888866678999999997-79-----8699904999998500001135665310001222111000111100124678
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EK-----IPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G-----~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
+.|-|-.||||||++.-+.+ +| ++.++-|+. .-+..++++ .-| +=++|.+..-
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yieGDdL----HP~~Ni~KM--s~G---------------iPL~DdDR~p 59 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYIEGDDL----HPAANIEKM--SRG---------------IPLNDDDRWP 59 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC----CCHHHHHHH--CCC---------------CCCCCCCCHH
T ss_conf 9676027862889999999985431578875688666----787779873--178---------------8887012043
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCE----------EEEEEECCCHHHHHHHHHHCC--
Q ss_conf 887534899999999766774202476-3334564325558756422----------789995211135688887179--
Q gi|255764477|r 78 ILEKIVHPMVRMHEKKILHDLSCRGEK-IVFFDTPLLFEKRKEYLFD----------AVVVVTCSFETQRERVLSRKK-- 144 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~~~i~~~~~~~~~-~vv~e~pLL~E~~~~~~~d----------~vi~V~a~~~~r~~Rl~~R~~-- 144 (199)
||.++ -............. .+|.=.+| .-.|++..- ..|+..++.++..+|+.+|.|
T Consensus 60 WL~~l--------~~~~~~~~~~~~~~~~~~~CSAL--Kr~YRD~LR~s~~~~~~~~~FiyL~~~~~~~~~R~~~RkGHF 129 (175)
T TIGR01313 60 WLKNL--------ADALAQAAAKNKVHLVIITCSAL--KRKYRDILRSSLEEAEPELHFIYLSGSKEVILKRMKSRKGHF 129 (175)
T ss_pred HHHHH--------HHHHHHHHHCCCCCCEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 79999--------99999998457745447884011--135556654220268984378863689899999961078998
Q ss_pred CCHHHHH-HHHHCCCC-H-HHHHHHCC-EEEECCCCHHHHHHHHHHHH
Q ss_conf 8989999-99972999-7-89998689-89987999899999999999
Q gi|255764477|r 145 HTEENFL-FILSKQMN-E-KDKISRAD-YVINTEGTIEAIEKETQKML 188 (199)
Q Consensus 145 ~s~e~~~-~~~~~Q~~-~-~~k~~~aD-~vI~N~~s~~~l~~~i~~~~ 188 (199)
+....+. ++-.-|.| . +|+ | .+|+++.+++....+...++
T Consensus 130 Mka~m~~SQf~~LE~P~~nDE~----d~~~vd~~~~~e~~~~~~~~~v 173 (175)
T TIGR01313 130 MKADMLESQFEALEEPTANDET----DVVTVDIDQPLEAVEEDCLAVV 173 (175)
T ss_pred CCCHHHHHHHHHHCCCCCCCCC----CEEEECCCCCHHHHHHHHHHHH
T ss_conf 6204789999972788888885----4378606886578999999998
No 109
>PRK13976 thymidylate kinase; Provisional
Probab=97.50 E-value=0.002 Score=41.98 Aligned_cols=180 Identities=14% Similarity=0.186 Sum_probs=80.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC------CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 59998888666789999999977------986999049999985000011356653100012221110001111001246
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE------KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAK 75 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~------G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~ 75 (199)
|-|.+-|.=||||||.++.|++. +.+++-. ++=.+.+.-+.+.+.+.. ...+ ....+..+--...
T Consensus 1 mfIvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~t----rEPggt~~ge~IR~~ll~---~~~~--~~~te~lLf~A~R 71 (202)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVLT----REPGGTSFNESVRGLLLS---TKNL--DKLSELLLFIAMR 71 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE----CCCCCCCHHHHHHHHHHC---CCCC--CHHHHHHHHHHHH
T ss_conf 989998999998999999999999860699868983----799998278999999716---5579--9699999999999
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHH-HHCCCCCCCCCCCCCCCCCC---CCCCCEEEEEEECCCHHHHHHHHHHCCCCH
Q ss_conf 7888753489999999----976677-42024763334564325558---756422789995211135688887179898
Q gi|255764477|r 76 LEILEKIVHPMVRMHE----KKILHD-LSCRGEKIVFFDTPLLFEKR---KEYLFDAVVVVTCSFETQRERVLSRKKHTE 147 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~----~~~i~~-~~~~~~~~vv~e~pLL~E~~---~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~ 147 (199)
...++++|-|....-. .++... .-.++..- -++...+.+-+ ....-|.+++.+.|+++..+|..+ +++..
T Consensus 72 ~eh~~~~I~PaL~~g~~VI~DRy~~St~AYQg~~~-gl~~~~i~~l~~~~~~~~PDlt~~Ldi~~e~al~R~~~-~~~e~ 149 (202)
T PRK13976 72 REHFVKVILPALTQGKIVICDRFIDSTIAYQGYGC-GIDLKLIRDLNDLVVDIYPDITFILDIDINQSLSRADK-NGYEF 149 (202)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCC-CCHHH
T ss_conf 99999998888866998997485355788732267-98999999999984078988799983788999752146-86212
Q ss_pred H--HHHHHHHCCCCHHHHHHHCC--EEE---ECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9--99999972999789998689--899---8799989999999999999999
Q gi|255764477|r 148 E--NFLFILSKQMNEKDKISRAD--YVI---NTEGTIEAIEKETQKMLKYILK 193 (199)
Q Consensus 148 e--~~~~~~~~Q~~~~~k~~~aD--~vI---~N~~s~~~l~~~i~~~~~~i~~ 193 (199)
+ ++..+...-. .+-..+..+ .+| +.+.++++....+.++++.+..
T Consensus 150 ~~~~f~~kVr~~Y-l~la~~~~~r~~~I~~ida~~~i~~I~~~~~~ii~~~~~ 201 (202)
T PRK13976 150 MDLEFYARVRKGF-QDIAKKNPHRCHLITCIDATDNINDINSVHLKIIKVLQA 201 (202)
T ss_pred CCHHHHHHHHHHH-HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 0599999999999-999985998789997035767989999999999999861
No 110
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=97.46 E-value=0.00084 Score=44.27 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=60.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
..+.|.|..|||||.+.+-|++.|++|+|.-.+|+- . -..||.... + ..=.+.-|. +
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~G~qviDLEglAnH----R-----GS~FG~~~~-~----~QPsQk~FE---------n 184 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANH----R-----GSSFGALGL-G----PQPSQKRFE---------N 184 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHC----C-----CCCCCCCCC-C----CCCCHHHHH---------H
T ss_conf 769987888877899999999769974258998631----4-----653468888-9----997899999---------9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------C-CCC-CEEEEEEECCCHHHHHHHHHH
Q ss_conf 348999999997667742024763334564325558----------7-564-227899952111356888871
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKR----------K-EYL-FDAVVVVTCSFETQRERVLSR 142 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~----------~-~~~-~d~vi~V~a~~~~r~~Rl~~R 142 (199)
.++-.. . +..+.+++++|. |+. + ..+ ....|.|.+|.+.|.+|+.+-
T Consensus 185 ~l~~~l--------~--~~~~~~~i~vE~----ES~~IG~~~iP~~l~~~M~~a~~i~i~~~le~Rv~~l~~~ 243 (311)
T TIGR03167 185 ALAEAL--------R--RLDPGRPIFVED----ESRRIGRVALPDALFEAMRAAPLVELEASLEERVERLVEE 243 (311)
T ss_pred HHHHHH--------H--CCCCCCCEEEEE----CCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 999999--------8--178889569960----3313057138999999985199899989999999999998
No 111
>PRK06762 hypothetical protein; Provisional
Probab=97.45 E-value=0.0037 Score=40.26 Aligned_cols=145 Identities=23% Similarity=0.264 Sum_probs=77.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH---CCCEEEEHHHHHHHHHH-HH-----HHHHHH--HHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 5999888866678999999997---79869990499999850-00-----011356--6531000122211100011110
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK---EKIPVISSDDIVDKLYH-YE-----AVDIIK--KTFPRSIQNNKVNKARLLGILQ 70 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~---~G~~v~~aD~i~~~l~~-~~-----~~~~i~--~~fg~~i~~~~i~r~~l~~~vf 70 (199)
..|-|-|+.||||||+|+-|.+ .|...++-|.+-|+++. ++ ....+. ..||..-... |
T Consensus 3 ~LIiiRGNSgSGKtT~Ak~L~~~~G~g~lLvsQD~vRR~mLr~kD~~g~~~i~Li~~~~~yg~~~~~~----------V- 71 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLQHCEF----------V- 71 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCE----------E-
T ss_conf 28999788888878999999998688857853758999984055779997868999999999856998----------9-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCC---CCH
Q ss_conf 01246788875348999999997667742024763334564325558756422789995211135688887179---898
Q gi|255764477|r 71 KSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKK---HTE 147 (199)
Q Consensus 71 ~~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~---~s~ 147 (199)
-||.|++...+..+-+.+..... +. -.+-|.+.|.+.-+.|=..|.. +++
T Consensus 72 -------IlEGIL~a~~Yg~ml~~l~~~~~-~~-------------------~~~YY~Di~FeETlrRH~tr~~~~~Fg~ 124 (166)
T PRK06762 72 -------ILEGILNSDRYGPMLKELIHLFG-GN-------------------AYTYYFDLSFEETVRRHNTRPKSHEFGE 124 (166)
T ss_pred -------EEEEECCHHHHHHHHHHHHHHCC-CC-------------------EEEEEEECCHHHHHHHHHCCCCCCCCCH
T ss_conf -------99741004489999999998657-86-------------------6999994877999998746776567698
Q ss_pred HHHHHHHHCCCCHHHHHHHCC-EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 999999972999789998689-89987999899999999999999
Q gi|255764477|r 148 ENFLFILSKQMNEKDKISRAD-YVINTEGTIEAIEKETQKMLKYI 191 (199)
Q Consensus 148 e~~~~~~~~Q~~~~~k~~~aD-~vI~N~~s~~~l~~~i~~~~~~i 191 (199)
++.. .|..+ .......+ .+|....|+++.-. .+++.+
T Consensus 125 ~~mr---~W~~~-~D~L~~~~E~~~~~~~tl~~~v~---~Il~di 162 (166)
T PRK06762 125 DDMR---RWWLP-HDTLGVEGETIFTDELSLNDIFD---AILTDI 162 (166)
T ss_pred HHHH---HHCCC-CCCCCCCCCEEECCCCCHHHHHH---HHHHHH
T ss_conf 9999---77555-45559998678577678899999---999974
No 112
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.38 E-value=0.00015 Score=49.05 Aligned_cols=99 Identities=16% Similarity=0.259 Sum_probs=60.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHH
Q ss_conf 999888866678999999997-----7986999049999985000011356653100012-2211100011110012467
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQN-NKVNKARLLGILQKSPAKL 76 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~-~~i~r~~l~~~vf~~~~~l 76 (199)
.|||||..||||||+++.++- +|=..+|--+++- . .|. -+.-..|-..++ -=.+|+-.-++-..||..=
T Consensus 493 ~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA~--~-DP~--wLRRQ~gVVLQEn~LFsrSirdNI~l~~P~~~ 567 (703)
T TIGR01846 493 VIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLAI--A-DPA--WLRRQVGVVLQENVLFSRSIRDNIALCNPGAS 567 (703)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC--C-CCC--HHHHCCEEEEECCHHHCCCHHHHHHHCCCCCC
T ss_conf 799872789867899999886148888747770300010--1-852--01022302340002101227889851777769
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 888753489999999976677420247633345
Q gi|255764477|r 77 EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFD 109 (199)
Q Consensus 77 ~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e 109 (199)
.|.++|-.=.+-..+||...+. |++--|-|
T Consensus 568 --~E~Vi~AA~LAGA~dFI~~Lp~-GY~T~vgE 597 (703)
T TIGR01846 568 --VEHVIAAAKLAGAHDFISELPQ-GYNTEVGE 597 (703)
T ss_pred --HHHHHHHHHHCCHHHHHHHCCC-CCCCCCEE
T ss_conf --8999999862185899973637-67740012
No 113
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00025 Score=47.59 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=50.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHH----HCCCEEEEHHHHHHHHHHHH---HHHHHHHHHHHC--CCCCCCCCCCHHHHHHH
Q ss_conf 9599988886667899999999----77986999049999985000---011356653100--01222111000111100
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLK----KEKIPVISSDDIVDKLYHYE---AVDIIKKTFPRS--IQNNKVNKARLLGILQK 71 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~----~~G~~v~~aD~i~~~l~~~~---~~~~i~~~fg~~--i~~~~i~r~~l~~~vf~ 71 (199)
||.|+|||.+||||||++..+. +.||.|--- +..++-..+ ++..+.-.-|+. +..-.-.+.+++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf--~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~-- 80 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF--ITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG-- 80 (179)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE--EEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEE--
T ss_conf 45999867998458999999999998559665139--83114208827515999814795579888478876210478--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCC
Q ss_conf 12467888753489999999976677420247633345--6432555
Q gi|255764477|r 72 SPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEK 116 (199)
Q Consensus 72 ~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~ 116 (199)
-+.+.++.+.-|.++...+ ..+++++| .|+=+-+
T Consensus 81 --V~v~~le~i~~~al~rA~~---------~aDvIIIDEIGpMElks 116 (179)
T COG1618 81 --VNVEGLEEIAIPALRRALE---------EADVIIIDEIGPMELKS 116 (179)
T ss_pred --EEHHHHHHHHHHHHHHHHH---------CCCEEEEECCCCHHHCC
T ss_conf --6278889986899998863---------49989994336330200
No 114
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=97.29 E-value=0.0067 Score=38.63 Aligned_cols=160 Identities=17% Similarity=0.183 Sum_probs=84.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC---CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977---986999049999985000011356653100012221110001111001246788
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE---KIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~---G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~ 78 (199)
.||-+-|...|||||+++-|... -|..++.|....-+-... . .-+..+.... .+...+ .
T Consensus 2 ~II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~-~-----~~~~gl~~~~-~~~~~g-------~---- 63 (174)
T pfam07931 2 RIILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEAMPPKR-Q-----DSGDGLEWST-VGPVIG-------P---- 63 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCC-C-----CCCCCCCCCC-CCCCHH-------H----
T ss_conf 19997489988879999999984747467642858887677112-5-----8877766366-665235-------6----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCC---CCEE-EEEEECCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 8753489999999976677420247633345643---25558756---4227-899952111356888871798989999
Q gi|255764477|r 79 LEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPL---LFEKRKEY---LFDA-VVVVTCSFETQRERVLSRKKHTEENFL 151 (199)
Q Consensus 79 L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pL---L~E~~~~~---~~d~-vi~V~a~~~~r~~Rl~~R~~~s~e~~~ 151 (199)
+.|....-+...+......+.++++=++.+ .+..-+.+ -++. .|-|.||.++-.+|=..|.+-..-.+.
T Consensus 64 ----~~~~~~~~~~~~iaa~a~~G~nvIvD~v~~~~~~l~d~~~~~L~g~~v~~VGV~Cpleil~~RE~~RgDR~~G~A~ 139 (174)
T pfam07931 64 ----EFPLFEAAFYEAVAAMARAGNNVIVDDVILSGEWLQDCLQRLLSGLDVLFVGVRCPLEVLERREIERGDRVPGLAA 139 (174)
T ss_pred ----HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCCHHH
T ss_conf ----6999999999999999977999899654669378999999985898179999878999999998736999965557
Q ss_pred HHHHCCCCH-HHHHHHCCEEEECC-CCHHHHHHHHHHHH
Q ss_conf 999729997-89998689899879-99899999999999
Q gi|255764477|r 152 FILSKQMNE-KDKISRADYVINTE-GTIEAIEKETQKML 188 (199)
Q Consensus 152 ~~~~~Q~~~-~~k~~~aD~vI~N~-~s~~~l~~~i~~~~ 188 (199)
+|... ..-. .-|+.|+++ .|.+++-.+|.+.+
T Consensus 140 ----~q~~~VH~~~-~YDlevDTs~~s~~ecA~~I~~~l 173 (174)
T pfam07931 140 ----WQAEAVHAGV-EYDLEVDTSHQTPEECARRIRSRL 173 (174)
T ss_pred ----HHHHHHCCCC-CCCEEEECCCCCHHHHHHHHHHHH
T ss_conf ----8998602599-986686799999999999999973
No 115
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00095 Score=43.93 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=50.6
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCE-EEECCCCHHHHHHHHHHHHH
Q ss_conf 7899952111356888871798989999999729997899986898-99879998999999999999
Q gi|255764477|r 124 AVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADY-VINTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 124 ~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q~~~~~k~~~aD~-vI~N~~s~~~l~~~i~~~~~ 189 (199)
.+++|.+++++--+|+.+|.--|.|++..|+.++.....- -.|. .|+|+|.++..-.+....+.
T Consensus 117 lvv~ita~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~~--~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 117 LVVCITASPEVLAQRLAERGRESREEILARLARAARYTAG--PGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred EEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC--CCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 3699724878999999986547999999999751434358--9986897389867789999999997
No 116
>PRK13695 putative NTPase; Provisional
Probab=97.21 E-value=0.0004 Score=46.31 Aligned_cols=28 Identities=43% Similarity=0.552 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHH----HHCCCEE
Q ss_conf 959998888666789999999----9779869
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFL----KKEKIPV 28 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l----~~~G~~v 28 (199)
||.|+|||.+|+||||+..-+ ++.|+.+
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v 34 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAELLAREGYKV 34 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 42999878999889999999999986369617
No 117
>COG0645 Predicted kinase [General function prediction only]
Probab=97.20 E-value=0.0035 Score=40.42 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=32.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHH
Q ss_conf 999888866678999999997-79869990499999850
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYH 40 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~ 40 (199)
.+-+-|.+||||||++..+.+ +|+..+.+|.+-+.|..
T Consensus 3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g 41 (170)
T COG0645 3 LVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG 41 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHCC
T ss_conf 799725888658688789885348668741789987238
No 118
>PRK12338 hypothetical protein; Provisional
Probab=97.18 E-value=0.023 Score=35.32 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=81.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCC--CHHHHHHHHH--HH
Q ss_conf 5999888866678999999997-79869990499999850000-11356653100012221110--0011110012--46
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEA-VDIIKKTFPRSIQNNKVNKA--RLLGILQKSP--AK 75 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~-~~~i~~~fg~~i~~~~i~r~--~l~~~vf~~~--~~ 75 (199)
++|=+-|..|+||||+|..|+. +|++.+=+-+-+|+++-.-. .+..-..|-..+..++.-|. .....-+.+. .-
T Consensus 5 liILiGGtSGvGKSTlAseLAsRLgI~tvIsTDsIRevmR~~is~e~~P~L~~STY~A~~~Lr~~~~~~~~~~~~~vi~G 84 (320)
T PRK12338 5 YVILIGSASGIGKSTIASEVARRLNIKHLIETDFIREVVRGIIGKEYAPALHMSSYNAYTALRDKDHFVPKRFEELVIAG 84 (320)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 79997068887688899999985198711033479999998338041534554202678872674235774116789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCC-CCCC--CEEEEEEECCCHHHHHHHHHHC-----
Q ss_conf 78887534899999999766774202476333456----4325558-7564--2278999521113568888717-----
Q gi|255764477|r 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT----PLLFEKR-KEYL--FDAVVVVTCSFETQRERVLSRK----- 143 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~----pLL~E~~-~~~~--~d~vi~V~a~~~~r~~Rl~~R~----- 143 (199)
.+.=...|-|.+-.-+.+++ ..+.. +|+|. |=++... +.+. -.+.|+ .++++.-.+|...|-
T Consensus 85 fe~q~e~V~~~le~vI~r~~----~~~~s-ivIEGVHLvPgfi~~~~~~~~~~i~F~i~-~~~E~kH~eRF~~Rak~m~r 158 (320)
T PRK12338 85 FEEHASFVIPAIEKVIKRAV----TDADD-IVIEGVHLVPGLINIEQFYEYANIHFFIL-YADEEEHKERFVKRAMEIKR 158 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HCCCC-EEEEEEEECHHHCCHHHHCCCCCCEEEEE-ECCHHHHHHHHHHHHHHHHC
T ss_conf 99998999999999999998----64886-79984530555505766226666369999-81768999999999988502
Q ss_pred -CCCHHHHHHHHHCCCCHHHHHHHCC---E-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf -9898999999972999789998689---8-9987999899999999999999
Q gi|255764477|r 144 -KHTEENFLFILSKQMNEKDKISRAD---Y-VINTEGTIEAIEKETQKMLKYI 191 (199)
Q Consensus 144 -~~s~e~~~~~~~~Q~~~~~k~~~aD---~-vI~N~~s~~~l~~~i~~~~~~i 191 (199)
|--.+-+.++.-.| +..++.|| . +|+|. .++..-.++-..+.+.
T Consensus 159 ~~Kyvkyf~niR~Iq---d~L~~~Adeh~iP~I~N~-nid~sV~~i~~~I~~~ 207 (320)
T PRK12338 159 GGKHLEYFRENRIIH---DFLVSQADEHGIPVIKND-DIDRTVSKVLSVIREV 207 (320)
T ss_pred CCCHHHHHHHHHHHH---HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHH
T ss_conf 650899999889999---999841676199730476-3556899999999987
No 119
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.17 E-value=0.00092 Score=44.02 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=37.8
Q ss_pred CCCCCCCCC--CCCCC--CCCCCCCEEEEEEECCCHHH----HHHHHHHCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 476333456--43255--58756422789995211135----6888871798989999999729997899
Q gi|255764477|r 102 GEKIVFFDT--PLLFE--KRKEYLFDAVVVVTCSFETQ----RERVLSRKKHTEENFLFILSKQMNEKDK 163 (199)
Q Consensus 102 ~~~~vv~e~--pLL~E--~~~~~~~d~vi~V~a~~~~r----~~Rl~~R~~~s~e~~~~~~~~Q~~~~~k 163 (199)
+.+++|+|. +.+.. .+.....|..|.|.-.-++. ++|=++.+|+|.|.+..-+.+-+|+...
T Consensus 117 ~tdlLfyEGLHg~v~t~~~dva~~vDL~IgVvP~vnLeWiqKI~RD~~eRGyS~EaV~~tIlrRmpDyv~ 186 (277)
T cd02029 117 DTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRMPDYIN 186 (277)
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHH
T ss_conf 9846999578766567430568765866510744773437877500543099999999999853840565
No 120
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.16 E-value=0.0048 Score=39.52 Aligned_cols=117 Identities=25% Similarity=0.204 Sum_probs=57.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999888866678999999997----7986999049999985000011356653100012221110001111001246788
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~ 78 (199)
.|-+||-+||||||.|+-|++ .|+.|+--++ +.+. +.+. .|.+...
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d---~~~~-------------------~~~~-----~y~~s~~--- 50 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEEKGYDVIVISD---ESLG-------------------IESD-----DYKDSKK--- 50 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC---CCCC-------------------CCCC-----CCCCCHH---
T ss_conf 97985799996889999999999975993899780---0126-------------------7531-----0001047---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----------CCCCEEEEEEECCCHHHHHHHHHHC-C-CC
Q ss_conf 8753489999999976677420247633345643255587----------5642278999521113568888717-9-89
Q gi|255764477|r 79 LEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRK----------EYLFDAVVVVTCSFETQRERVLSRK-K-HT 146 (199)
Q Consensus 79 L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~----------~~~~d~vi~V~a~~~~r~~Rl~~R~-~-~s 146 (199)
|+.+--..+..+++.+ .+..+||+|.-- |=.|+ ...-.-+|++.||.+.-.+|-.+|. . ++
T Consensus 51 -Ek~~R~~l~s~v~r~L-----s~~~iVIlD~~N-YiKG~RYEL~C~Ak~~~t~~c~v~~~~p~e~~~~~N~~r~~~~y~ 123 (266)
T pfam08433 51 -EKFLRGSLRSAVKRDL-----SKNTIVIVDSLN-YIKGFRYELYCIAKEAKTTYCVVYCKAPLDTCLKWNEERGEPSWP 123 (266)
T ss_pred -HHHHHHHHHHHHHHHH-----CCCCEEEECCCC-CHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCC
T ss_conf -8999999999998751-----668889954874-045689999999986388848999689989999862147777898
Q ss_pred HHHHHHHHHC
Q ss_conf 8999999972
Q gi|255764477|r 147 EENFLFILSK 156 (199)
Q Consensus 147 ~e~~~~~~~~ 156 (199)
.+.+.....+
T Consensus 124 ~e~~~~L~~R 133 (266)
T pfam08433 124 DELLDQLYQR 133 (266)
T ss_pred HHHHHHHHHH
T ss_conf 7999999997
No 121
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=97.08 E-value=0.00065 Score=44.95 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCEE
Q ss_conf 5999888866678999999997----79869
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIPV 28 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~v 28 (199)
.+|||||-||.||||+.+-|-+ .|+.|
T Consensus 39 ~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~V 69 (333)
T TIGR00750 39 HVVGITGVPGAGKSTLVEKLIMELRRRGLKV 69 (333)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 7876646888857779999989997659768
No 122
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.0028 Score=40.98 Aligned_cols=136 Identities=20% Similarity=0.249 Sum_probs=73.0
Q ss_pred EECCCCCCHHHHHHHH--HH-CCCEEEEHHHHHHHHHH--HHH-----HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8888666789999999--97-79869990499999850--000-----11356653100012221110001111001246
Q gi|255764477|r 6 LTGSIGTGKTTVAEFL--KK-EKIPVISSDDIVDKLYH--YEA-----VDIIKKTFPRSIQNNKVNKARLLGILQKSPAK 75 (199)
Q Consensus 6 itG~igSGKStv~~~l--~~-~G~~v~~aD~i~~~l~~--~~~-----~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~ 75 (199)
+.|--||||||+.... .. .|+.++|+|.++.++.. +.. ...+...+-..+.. .+....+-+++-+..
T Consensus 7 vaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~---~~~F~~ETtLS~~s~ 83 (187)
T COG4185 7 VAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDL---GRPFIAETTLSGPSI 83 (187)
T ss_pred EECCCCCCCEEEEECCCHHHCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCEEEEECCCHH
T ss_conf 96688887325431023221487599877998553389996477899999999999999974---998415775136118
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH-----CCCCHHHH
Q ss_conf 7888753489999999976677420247633345643255587564227899952111356888871-----79898999
Q gi|255764477|r 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSR-----KKHTEENF 150 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R-----~~~s~e~~ 150 (199)
+ +.+...+..+.-+. . ...+.-+.++..+|++.| .+.+++.+
T Consensus 84 ~----------------~~ik~Ak~~Gf~I~---------------L--~y~~i~~~elavERVk~RVa~GGH~IpED~I 130 (187)
T COG4185 84 L----------------ELIKTAKAAGFYIV---------------L--NYIVIDSVELAVERVKLRVAKGGHDIPEDKI 130 (187)
T ss_pred H----------------HHHHHHHHCCEEEE---------------E--EEEEECCHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 9----------------99999986776999---------------9--9999672888999999998617888818899
Q ss_pred HHHHHCCCC-HHHHHHHCCE-EEECCCCH
Q ss_conf 999972999-7899986898-99879998
Q gi|255764477|r 151 LFILSKQMN-EKDKISRADY-VINTEGTI 177 (199)
Q Consensus 151 ~~~~~~Q~~-~~~k~~~aD~-vI~N~~s~ 177 (199)
..|..+-+. ......+||- .|++|++.
T Consensus 131 r~RY~rsle~l~~~l~l~dr~~IydNS~~ 159 (187)
T COG4185 131 RRRYRRSLELLAQALTLADRATIYDNSRL 159 (187)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 99999999989999865442289628988
No 123
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.04 E-value=0.017 Score=36.12 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=42.6
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHC--CCCHHHH--HHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 789995211135688887179898999999972--9997899--986898998799989999999999999
Q gi|255764477|r 124 AVVVVTCSFETQRERVLSRKKHTEENFLFILSK--QMNEKDK--ISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 124 ~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~--Q~~~~~k--~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
-.|++.||.+.-++|-.+|..--.++....|.. ++|.-+| =++-.++|.+.+...+-..++..++..
T Consensus 157 ~qi~l~c~le~cl~RN~~R~~pvp~~tI~~M~~k~E~P~p~kn~WE~~Sl~i~s~~~~~e~~~~i~~ll~t 227 (340)
T TIGR03575 157 CQLFLDCPVESCLLRNKQRPVPLPDETIQLMGRKIEKPNPEKNAWEHNSLVIQSSACISEDSLEVTDLLNT 227 (340)
T ss_pred EEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 79886287999997402589999889999999606899977676111236732678764155999999999
No 124
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.97 E-value=0.00095 Score=43.93 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=30.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHH
Q ss_conf 9998888666789999999977986999049999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVD 36 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~ 36 (199)
.+.|+|..|||||.+.+-|++.|++|+|.-.+|+
T Consensus 139 ~~vl~G~TG~GKT~lL~~L~~~G~~viDLEglA~ 172 (333)
T PRK11784 139 LVVLGGMTGSGKTRLLQALANAGAQVLDLEGLAN 172 (333)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEECHHHHHH
T ss_conf 5998678887789999999975997433898863
No 125
>KOG0707 consensus
Probab=96.95 E-value=0.0091 Score=37.78 Aligned_cols=65 Identities=23% Similarity=0.219 Sum_probs=47.2
Q ss_pred EEEE-CCCHHHHHHHHHHCCCCHHHHHHHHH-CCCCHHHHHH--HCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9995-21113568888717989899999997-2999789998--6898998799989999999999999
Q gi|255764477|r 126 VVVT-CSFETQRERVLSRKKHTEENFLFILS-KQMNEKDKIS--RADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 126 i~V~-a~~~~r~~Rl~~R~~~s~e~~~~~~~-~Q~~~~~k~~--~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
+++. .+.....+|+..|.--+.+++.+|+. .|........ ..|++|.|..++++.+.++..++-.
T Consensus 153 i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns~~lee~~kel~~~~~~ 221 (231)
T KOG0707 153 IFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENSGSFDLVIVNSDRLEEAYKELEIFISS 221 (231)
T ss_pred EEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 982288601588875414740199999998865653202347763452121788624545554323467
No 126
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.89 E-value=0.0015 Score=42.69 Aligned_cols=36 Identities=36% Similarity=0.475 Sum_probs=31.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH
Q ss_conf 5999888866678999999997-7986999049999985
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLY 39 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~ 39 (199)
.+|.|+|-.|||||.+|--|++ ++..|+|||.. ++|
T Consensus 5 ~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~--QvY 41 (304)
T PRK00091 5 KLIVLVGPTASGKTALAIELAKRLNGEIISVDSM--QVY 41 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHH--HHH
T ss_conf 7799989886589999999999879989941268--874
No 127
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.84 E-value=0.0015 Score=42.65 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=27.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 959998888666789999999977986999
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVIS 30 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~ 30 (199)
|.+.-+||++|+||||...-|+..||.++.
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~Gfatve 38 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARAGFATVE 38 (183)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEC
T ss_conf 338998379997689999999975863501
No 128
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.83 E-value=0.00076 Score=44.54 Aligned_cols=22 Identities=50% Similarity=0.774 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
+|+|+|++||||||+++.|++.
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 9788368888725899999999
No 129
>PRK13768 GTPase; Provisional
Probab=96.81 E-value=0.002 Score=41.94 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=32.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH------CCCEEEEHHHHHHHH-HHH
Q ss_conf 95999888866678999999997------798699904999998-500
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK------EKIPVISSDDIVDKL-YHY 41 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~------~G~~v~~aD~i~~~l-~~~ 41 (199)
|+.+-++|.+||||||.|+-+.+ +...++|.|-.+..+ |.+
T Consensus 2 ~~~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~ 49 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKP 49 (253)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 718999899999889999999999997699759997898665899998
No 130
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=96.81 E-value=0.015 Score=36.35 Aligned_cols=175 Identities=20% Similarity=0.266 Sum_probs=88.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHHHHHHHHHH---HHHHHHHHHHHCC--CCCCCCCCCHHHHHHH
Q ss_conf 5999888866678999999997-----7986999049999985000---0113566531000--1222111000111100
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDIVDKLYHYE---AVDIIKKTFPRSI--QNNKVNKARLLGILQK 71 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-----~G~~v~~aD~i~~~l~~~~---~~~~i~~~fg~~i--~~~~i~r~~l~~~vf~ 71 (199)
|=|.|=|-=||||||+++.|++ .|+.++ -..+|. .-+.|++..-+.. .+.++.-+.++-...+
T Consensus 3 ~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~-------~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaA 75 (211)
T TIGR00041 3 MFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVL-------FTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAA 75 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE-------EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 458885115875899999999997751383478-------8718999878999999999874146663359999999998
Q ss_pred HHH-HHHHHHHHHHHHHHHHH----HHHHH-HHHCCCCCCCCCCCCCCCCCC----CCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 124-67888753489999999----97667-742024763334564325558----756422789995211135688887
Q gi|255764477|r 72 SPA-KLEILEKIVHPMVRMHE----KKILH-DLSCRGEKIVFFDTPLLFEKR----KEYLFDAVVVVTCSFETQRERVLS 141 (199)
Q Consensus 72 ~~~-~l~~L~~iiHP~V~~~~----~~~i~-~~~~~~~~~vv~e~pLL~E~~----~~~~~d~vi~V~a~~~~r~~Rl~~ 141 (199)
|.. .|..+...|-|...... .|++. -.-.++.. -=++.-+..+-+ .+-.-|.|+++++++++.++|+..
T Consensus 76 dR~~HL~~~~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~-~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~d~e~al~R~~~ 154 (211)
T TIGR00041 76 DRHDHLEHVEEKIKPALAQGKLVISDRYLFSSIAYQGLA-RGIDIDLVLELNEDALGDMKPDLTILLDIDPEVALERLRK 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHC
T ss_conf 589999978987788986696799841124357775422-5688889999977521135866689886073779887520
Q ss_pred HCC---CCHHHHHH---HHHCC---CCHHHHHH----HCCEEEECCCC-HHHHHHHH
Q ss_conf 179---89899999---99729---99789998----68989987999-89999999
Q gi|255764477|r 142 RKK---HTEENFLF---ILSKQ---MNEKDKIS----RADYVINTEGT-IEAIEKET 184 (199)
Q Consensus 142 R~~---~s~e~~~~---~~~~Q---~~~~~k~~----~aD~vI~N~~s-~~~l~~~i 184 (199)
|+. .+....++ ...-| +.+-++-+ ..=++|+-+-+ ++++.+.|
T Consensus 155 ~g~~~~~~~~~~e~~d~~~~v~~~Yl~L~~~~~rkGD~~~~~~Da~~~~~~~v~~~I 211 (211)
T TIGR00041 155 RGEDELLDREEFEKLDFFEKVRERYLELADKFERKGDKKIVVIDATNSGVEEVEQDI 211 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHC
T ss_conf 472346655542118999999999999999841468863799866774478898609
No 131
>KOG4235 consensus
Probab=96.74 E-value=0.0019 Score=42.05 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=61.9
Q ss_pred EECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH---------
Q ss_conf 88886667899999999779869990499999850000113566531000122211100011110012467---------
Q gi|255764477|r 6 LTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKL--------- 76 (199)
Q Consensus 6 itG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l--------- 76 (199)
|-|+||+||||..++|.+.-++.. ++...+ ...=.+.-|.. .-+.+.++.+|...
T Consensus 27 iEGNIa~GKsTfl~~~~~~t~~~~-------ev~tEP-V~kW~nV~~~~--------~n~L~~mY~ep~Rws~tfQtYv~ 90 (244)
T KOG4235 27 IEGNIAVGKSTFLNFFLNKTYEEW-------EVLTEP-VAKWQNVQGAN--------ANLLDMMYREPARWSYTFQTYVF 90 (244)
T ss_pred EECCCCCCHHHHHHHHHHCCCCHH-------EECCCH-HHHHHCCCCCC--------CCHHHHHHHCHHHHCCHHHHHHH
T ss_conf 740111356899999985315013-------004762-88772267756--------54799874367762010467899
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C-----------CEEEEEEECCCHHH
Q ss_conf -88875348999999997667742024763334564325558756---------4-----------22789995211135
Q gi|255764477|r 77 -EILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEY---------L-----------FDAVVVVTCSFETQ 135 (199)
Q Consensus 77 -~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~---------~-----------~d~vi~V~a~~~~r 135 (199)
-+|..-.-|..-.+--++.+. ..-...++|++. |+|+|+.. | .|-+|+..|++++-
T Consensus 91 ltrL~~~~~p~~~~kpvrimER-Sv~SdRyiFv~n--l~esg~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc 167 (244)
T KOG4235 91 LTRLKVQLEPFNGRKPVRIMER-SVYSDRYIFVEN--LYESGSMNEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETC 167 (244)
T ss_pred HHHHHHHHCCCCCCCCEEEEHH-HHCCHHHHHHHH--HHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEEECCHHHH
T ss_conf 9999987346578887230024-540026578988--8863887630102598899999744750312599983695999
Q ss_pred HHHHHHHC-----CCCHHHHHHHH
Q ss_conf 68888717-----98989999999
Q gi|255764477|r 136 RERVLSRK-----KHTEENFLFIL 154 (199)
Q Consensus 136 ~~Rl~~R~-----~~s~e~~~~~~ 154 (199)
++|+.+|. |.+.+-.+..-
T Consensus 168 ~~Ri~~R~R~EE~gipL~YLe~LH 191 (244)
T KOG4235 168 YKRIYLRAREEEKGIPLKYLEALH 191 (244)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 999999866131586679999999
No 132
>COG4639 Predicted kinase [General function prediction only]
Probab=96.69 E-value=0.015 Score=36.37 Aligned_cols=121 Identities=21% Similarity=0.153 Sum_probs=64.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
..+.+.|..||||||.++-.- ..+++++.|++-..+-+ .+++.... + ++...++.+..
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~-~~~~~lsld~~r~~lg~---------~~~~e~sq-k-----------~~~~~~~~l~~ 60 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF-LQNYVLSLDDLRLLLGV---------SASKENSQ-K-----------NDELVWDILYK 60 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHC-CCCCEECHHHHHHHHHH---------CHHHHHCC-C-----------CHHHHHHHHHH
T ss_conf 489986688776428999717-99534149999988620---------20466501-3-----------37999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---------CCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 3489999999976677420247633345643255---------5875642278999521113568888717989899999
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFE---------KRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLF 152 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E---------~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~ 152 (199)
..+..-. ..++.|+|+-.+=- +.....++..|+.+.|.+.=.+|-..|...-.++...
T Consensus 61 ------------~l~qrl~-~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~~VI~ 127 (168)
T COG4639 61 ------------QLEQRLR-RGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPEEVIP 127 (168)
T ss_pred ------------HHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHCCCHHCCHHHHH
T ss_conf ------------9999997-397689975458999999999999983976899998188999987740440017989999
Q ss_pred HHHCC
Q ss_conf 99729
Q gi|255764477|r 153 ILSKQ 157 (199)
Q Consensus 153 ~~~~Q 157 (199)
++-.+
T Consensus 128 r~~r~ 132 (168)
T COG4639 128 RMLRE 132 (168)
T ss_pred HHHHH
T ss_conf 99998
No 133
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0024 Score=41.38 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=30.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCC--EEEEHHHHHHHHHH
Q ss_conf 5999888866678999999997----798--69990499999850
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKI--PVISSDDIVDKLYH 40 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~--~v~~aD~i~~~l~~ 40 (199)
.+|=+||-.||||||++..|++ +|+ .++|-|.+-|-|..
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~ 68 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR 68 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCC
T ss_conf 599964688887879999999999975975898557467650057
No 134
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.56 E-value=0.072 Score=32.15 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=82.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC---CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977---9869990499999850000113566531000-1222111000111100124678
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE---KIPVISSDDIVDKLYHYEAVDIIKKTFPRSI-QNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~---G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i-~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
.||-+.|...|||||+++-|+.. .|..+..|....-+- +...-.. -|... .++.+.- ...
T Consensus 3 ~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p--~~~~~~~--~~~~~~~~~~~~~----------g~~-- 66 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALP--LKCQDAE--GGIEFDGDGGVSP----------GPE-- 66 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCC--CCCCCCC--CCCCCCCCCCCCC----------CHH--
T ss_conf 49998689989889999999984767568841858988676--3136875--4223487766354----------156--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-C------CCEE-EEEEECCCHHHHHHHHHHCCCCH--
Q ss_conf 887534899999999766774202476333456432555875-6------4227-89995211135688887179898--
Q gi|255764477|r 78 ILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKE-Y------LFDA-VVVVTCSFETQRERVLSRKKHTE-- 147 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~-~------~~d~-vi~V~a~~~~r~~Rl~~R~~~s~-- 147 (199)
.|....-+...+......+.++ |+|-.++ +-.+- + -++. .|-|.||.++-.+|=..|.+-..
T Consensus 67 ------~~~~~~~~~~~iaa~a~aG~nv-IvD~v~~-~~~~l~d~~~~L~g~~v~~VGV~C~l~~l~~RE~~RgDR~~G~ 138 (175)
T cd00227 67 ------FRLLEGAWYEAVAAMARAGANV-IADDVFL-GRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVPGQ 138 (175)
T ss_pred ------HHHHHHHHHHHHHHHHHCCCCE-EEEEEEC-CCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCCH
T ss_conf ------9999999999999999779988-9863123-8088999999857992799998789999999987458999646
Q ss_pred --HHHHHHHHCCCCHHHHHHHCCEEEECCC-CHHHHHHHHHH
Q ss_conf --9999999729997899986898998799-98999999999
Q gi|255764477|r 148 --ENFLFILSKQMNEKDKISRADYVINTEG-TIEAIEKETQK 186 (199)
Q Consensus 148 --e~~~~~~~~Q~~~~~k~~~aD~vI~N~~-s~~~l~~~i~~ 186 (199)
.++...-. . . .-|+.|+++. |.+++-.+|..
T Consensus 139 A~~q~~~VH~---~----~-~YDleVDTs~~sp~eCA~~I~~ 172 (175)
T cd00227 139 ARKQARVVHA---G----V-EYDLEVDTTHKTPIECARAIAA 172 (175)
T ss_pred HHHHHHHHHC---C----C-CCCEEEECCCCCHHHHHHHHHH
T ss_conf 7889998435---9----9-8856877999999999999999
No 135
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=96.55 E-value=0.0027 Score=41.11 Aligned_cols=26 Identities=46% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHH----HHHCCCEE
Q ss_conf 999888866678999999----99779869
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEF----LKKEKIPV 28 (199)
Q Consensus 3 iIgitG~igSGKStv~~~----l~~~G~~v 28 (199)
.|.|||.+|+||||+..- |++.|+++
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~~~~~~v 30 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLKSEGVKV 30 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 989978999889999999999998679707
No 136
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=96.38 E-value=0.014 Score=36.54 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=52.0
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHH--HHHHHCCEE-EECCCCHHHHHHHHHHHHH
Q ss_conf 78999521113568888717989899999997299978--999868989-9879998999999999999
Q gi|255764477|r 124 AVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEK--DKISRADYV-INTEGTIEAIEKETQKMLK 189 (199)
Q Consensus 124 ~vi~V~a~~~~r~~Rl~~R~~~s~e~~~~~~~~Q~~~~--~k~~~aD~v-I~N~~s~~~l~~~i~~~~~ 189 (199)
.+|.|+|++++=-+||.+|.--+.+++.+|+.+-.... -...-+|.+ |+|+|+++.-=.++-.+|.
T Consensus 113 ~~V~Ita~~dVLa~RL~~RgRE~~~~I~~RL~Rs~~~~~dll~~~~dv~~i~NsG~~~~ag~~L~~ll~ 181 (183)
T TIGR02322 113 LVVNITASPDVLAQRLAARGRESAEEIEERLARSARFAGDLLLEPADVTTIDNSGSLEVAGETLLRLLR 181 (183)
T ss_pred EEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 027874581289999997589898899999887753110220059872798468027899999999985
No 137
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=96.32 E-value=0.002 Score=41.92 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 59998888666789999999977
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~ 24 (199)
.|-||.|-.||||||+.+-|..+
T Consensus 28 ~vTAlIGPSGCGKSTlLR~lNRM 50 (248)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRM 50 (248)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 05898778898678999998877
No 138
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.1 Score=31.22 Aligned_cols=174 Identities=18% Similarity=0.207 Sum_probs=83.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHH----HHHHHHHHH-HHHHC--CCCCCCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997-79869990499999850----000113566-53100--01222111000111100124
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYH----YEAVDIIKK-TFPRS--IQNNKVNKARLLGILQKSPA 74 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~----~~~~~~i~~-~fg~~--i~~~~i~r~~l~~~vf~~~~ 74 (199)
||=|-|-.|-||||+|..++. +|+..+-+-+-.++++- ++-...+.. .|..+ ..+..-+...++... |
T Consensus 91 IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~--d-- 166 (299)
T COG2074 91 IILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE--D-- 166 (299)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHH--H--
T ss_conf 999617887772579999999729861004247999999737977455356757799998368999961313178--7--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCEEEE-EEECCCHHHHHHHHHHCCCC---
Q ss_conf 67888753489999999976677420247633345----64325558756422789-99521113568888717989---
Q gi|255764477|r 75 KLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFD----TPLLFEKRKEYLFDAVV-VVTCSFETQRERVLSRKKHT--- 146 (199)
Q Consensus 75 ~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e----~pLL~E~~~~~~~d~vi-~V~a~~~~r~~Rl~~R~~~s--- 146 (199)
=-+.|-|-| ...+...-..+.. +|+| +|=+.+........... +..++++.-..|+-+|...+
T Consensus 167 ----qa~~V~~GI----~~VI~RAi~eG~~-lIIEGvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~ 237 (299)
T COG2074 167 ----QASAVMVGI----EAVIERAIEEGED-LIIEGVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTHAS 237 (299)
T ss_pred ----HHHHHHHHH----HHHHHHHHHCCCC-EEEEEEEECCCCCCHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf ----767999889----9999999853753-5887421150021676613551789998388789999999988887605
Q ss_pred ------HHHHHHHHHCCCCHHHHHHHCCE-EEECCCCHHHHHHHHHHHHHH
Q ss_conf ------89999999729997899986898-998799989999999999999
Q gi|255764477|r 147 ------EENFLFILSKQMNEKDKISRADY-VINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 147 ------~e~~~~~~~~Q~~~~~k~~~aD~-vI~N~~s~~~l~~~i~~~~~~ 190 (199)
.+-++.+...|==.-+....-+. +|+|+ ++++...++-..+.+
T Consensus 238 rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~-di~etv~~il~~i~~ 287 (299)
T COG2074 238 RPGGRYLEYFKEIRTIHDYLVERAREHGVPVIEND-DIDETVDRILEDIRK 287 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC-CHHHHHHHHHHHHHH
T ss_conf 96567999999999999999998886599811253-199999999999999
No 139
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.29 E-value=0.0084 Score=37.99 Aligned_cols=169 Identities=17% Similarity=0.152 Sum_probs=76.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCE---EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHH
Q ss_conf 9998888666789999999977986---999049999985000011356653100012221110001-111001246788
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKEKIP---VISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLL-GILQKSPAKLEI 78 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~G~~---v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~-~~vf~~~~~l~~ 78 (199)
.|||+|..||||||+++.+.-+.-| -+--|..-..-.... .+....|-.-.|..+...-++ ++-+.+|..-
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~---~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~-- 575 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA---SLRRQVGYVLQDPFLFSGSIRENIALGNPEAT-- 575 (709)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHH---HHHHHEEEECCCCHHHCCCHHHHHHCCCCCCC--
T ss_conf 8999879999889999998367888885599998727866999---99865468746653204739879746899999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCC--------------
Q ss_conf 875348999999997667742024763334564325558756422789995211135688887179--------------
Q gi|255764477|r 79 LEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKK-------------- 144 (199)
Q Consensus 79 L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~~-------------- 144 (199)
.|.+++-.-.....+++..... +.+..+-| .|..--- -=...+.+.|+.-++.
T Consensus 576 ~e~i~~A~~~ag~~~fI~~lP~-gy~t~v~E------~G~~LSG------GQrQrlalARaLl~~P~ILlLDEaTSaLD~ 642 (709)
T COG2274 576 DEEIIEAAQLAGAHEFIENLPM-GYDTPVGE------GGANLSG------GQRQRLALARALLSKPKILLLDEATSALDP 642 (709)
T ss_pred HHHHHHHHHHHCCHHHHHHCCC-CCCCCCCC------CCCCCCH------HHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 7999999998376899983605-45623204------8988888------899999999985469998997074223698
Q ss_pred CCHHHHHHHHHC-C--C------CHHHHHHHCCEEEE-------CCCCHHHHHHHHHHHHHH
Q ss_conf 898999999972-9--9------97899986898998-------799989999999999999
Q gi|255764477|r 145 HTEENFLFILSK-Q--M------NEKDKISRADYVIN-------TEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 145 ~s~e~~~~~~~~-Q--~------~~~~k~~~aD~vI~-------N~~s~~~l~~~i~~~~~~ 190 (199)
.|+..+.+-+.. . . ....-.+.||-++. .+||.+++..+ ......
T Consensus 643 ~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~ 703 (709)
T COG2274 643 ETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYAR 703 (709)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCEEEECCCCCEECCCCHHHHHHH-CCHHHH
T ss_conf 6799999999998458869999766168640257998169936024889999984-476999
No 140
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.28 E-value=0.0057 Score=39.06 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=28.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CC--CEEEEHHHHHHHH
Q ss_conf 999888866678999999997----79--8699904999998
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EK--IPVISSDDIVDKL 38 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G--~~v~~aD~i~~~l 38 (199)
++.|.|+..|||||.+.||.+ +| +.++|||-==.++
T Consensus 75 ~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 75 VVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEI 116 (398)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 899989867678899999998876447418999689997666
No 141
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.27 E-value=0.0032 Score=40.60 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5999888866678999999997
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~ 23 (199)
++.-||||||.||||+.++.-+
T Consensus 366 Kv~iLTGGPGTGKtT~t~~i~~ 387 (769)
T TIGR01448 366 KVVILTGGPGTGKTTITKAIIE 387 (769)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 4899857788861689999999
No 142
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.27 E-value=0.006 Score=38.93 Aligned_cols=31 Identities=39% Similarity=0.531 Sum_probs=24.6
Q ss_pred CEEEEEECCCCCCHHHHHHH----HHHCCCEEEEH
Q ss_conf 95999888866678999999----99779869990
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEF----LKKEKIPVISS 31 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~----l~~~G~~v~~a 31 (199)
|.+|+++|--+|||||+..- |.++|+.|=--
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~~G~~V~~i 35 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 92999996799999999999999999779859899
No 143
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=96.22 E-value=0.012 Score=37.00 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=32.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CC--CEEEEHHHHHHHHHHH
Q ss_conf 5999888866678999999997----79--8699904999998500
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EK--IPVISSDDIVDKLYHY 41 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G--~~v~~aD~i~~~l~~~ 41 (199)
++|...|-||+|||++|+.|.. +| ..+|++++.-|++.+.
T Consensus 14 lvIvmVGLPARGKS~ia~kl~RYL~W~g~~~kvFn~G~yRR~~~~~ 59 (223)
T pfam01591 14 TMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKA 59 (223)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCC
T ss_conf 8999989999988999999999986569980584263788763189
No 144
>TIGR01663 PNK-3'Pase polynucleotide kinase 3'-phosphatase; InterPro: IPR006550 These sequences represent the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3'-phosphates is essential for the further processing of the break by DNA polymerases , . The central phosphatase domain is a member of the IIIA subfamily (IPR006549 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by IPR006551 from INTERPRO. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. .
Probab=96.20 E-value=0.0044 Score=39.77 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHH-HHHHCCCEEEEHHHHHHH
Q ss_conf 99988886667899999-999779869990499999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAE-FLKKEKIPVISSDDIVDK 37 (199)
Q Consensus 3 iIgitG~igSGKStv~~-~l~~~G~~v~~aD~i~~~ 37 (199)
+|...|-+|||||+.++ +|...||.++|+|-++..
T Consensus 371 ~V~~VGlPG~GKS~F~~~~l~~~GY~~VN~DTLGS~ 406 (526)
T TIGR01663 371 VVVAVGLPGAGKSTFLKKFLVSAGYKIVNADTLGST 406 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCH
T ss_conf 899843899857788885403578558715456722
No 145
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.20 E-value=0.0043 Score=39.84 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCEEEEEEECCC
Q ss_conf 9766774202476333456--4325558756422789995211
Q gi|255764477|r 92 KKILHDLSCRGEKIVFFDT--PLLFEKRKEYLFDAVVVVTCSF 132 (199)
Q Consensus 92 ~~~i~~~~~~~~~~vv~e~--pLL~E~~~~~~~d~vi~V~a~~ 132 (199)
...+..+...+.+++++|- --.-|.......|.+++|..|.
T Consensus 81 ~~~i~~l~~~g~D~IiIETvGvGQse~~i~~~aD~~i~v~~p~ 123 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEVDIASMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCEEEEEECCC
T ss_conf 9999999975999899974877756026554356699996368
No 146
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=96.19 E-value=0.015 Score=36.50 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+..|||-.||||||+.+.+-+
T Consensus 2 v~iitGFLGsGKTTll~~ll~ 22 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLR 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 699934887889999999998
No 147
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.18 E-value=0.0088 Score=37.87 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=29.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CC--CEEEEHHHHHHHH
Q ss_conf 5999888866678999999997----79--8699904999998
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EK--IPVISSDDIVDKL 38 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G--~~v~~aD~i~~~l 38 (199)
.+|=+||..||||||+|+.|+. .| ..++|.|.+-|-|
T Consensus 444 ~~iw~tGlsgsGKstiA~~le~~L~~~g~~~~~LDGd~lR~gl 486 (613)
T PRK05506 444 ATVWFTGLSGSGKSTIANLVERRLHALGRHTYVLDGDNVRHGL 486 (613)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 6999977898974799999999999779987998808987410
No 148
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.0079 Score=38.17 Aligned_cols=34 Identities=32% Similarity=0.351 Sum_probs=30.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHH
Q ss_conf 95999888866678999999997-79869990499
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDI 34 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i 34 (199)
|.+|.|.|-.|||||..|--|++ +|.+|+|+|..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHH
T ss_conf 63799989887577899999999829928930235
No 149
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.10 E-value=0.0072 Score=38.44 Aligned_cols=188 Identities=22% Similarity=0.208 Sum_probs=87.6
Q ss_pred EEEEEECCCCCCHHHHHHHH-H----HCC--CEEEEHHHHH--HHHHH--H------HHHHHHHHHHHH--CCCCCCCCC
Q ss_conf 59998888666789999999-9----779--8699904999--99850--0------001135665310--001222111
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFL-K----KEK--IPVISSDDIV--DKLYH--Y------EAVDIIKKTFPR--SIQNNKVNK 62 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l-~----~~G--~~v~~aD~i~--~~l~~--~------~~~~~i~~~fg~--~i~~~~i~r 62 (199)
|+|+|||.=||||||++..+ . +.| .-++|||.=. |..++ . +..+.+++.-+. ....+++++
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 96999659976589999999999986489549999489999907762999987553008999999861478999553001
Q ss_pred -----CCHH-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-------C
Q ss_conf -----0001-111001246788--------875348999999997667742024763334564325558756-------4
Q gi|255764477|r 63 -----ARLL-GILQKSPAKLEI--------LEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEY-------L 121 (199)
Q Consensus 63 -----~~l~-~~vf~~~~~l~~--------L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~-------~ 121 (199)
..+. +++..++.-.-. -+...-|. ....+++++....+.+.++++|. |+|..+ -
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~-~allR~~l~~l~~~~~e~VivDt----EAGiEHfgRg~~~~ 155 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM-NALLRRLLRHLILNRYEVVIVDT----EAGIEHFGRGTIEG 155 (255)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCCEEEEEC----CCCHHHHCCCCCCC
T ss_conf 37543351698850068800799525567997431627-89999999997516674899963----34566656563257
Q ss_pred CEEEEEEECCC--HHH----HHHHHHHCC----------CCHHHH-HHHHHC--------CCCHHHHHHHCCEEEECCCC
Q ss_conf 22789995211--135----688887179----------898999-999972--------99978999868989987999
Q gi|255764477|r 122 FDAVVVVTCSF--ETQ----RERVLSRKK----------HTEENF-LFILSK--------QMNEKDKISRADYVINTEGT 176 (199)
Q Consensus 122 ~d~vi~V~a~~--~~r----~~Rl~~R~~----------~s~e~~-~~~~~~--------Q~~~~~k~~~aD~vI~N~~s 176 (199)
+|.+|.|.-|. .+| ++++..-=+ ++.++. ...... -.|.+...-.||+-=.--..
T Consensus 156 vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~e~~~~~~~~~~~~~vlg~iP~d~~v~~~dl~G~pl~~ 235 (255)
T COG3640 156 VDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEEEELLRELAEELGLEVLGVIPYDPEVVEADLKGEPLNE 235 (255)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCC
T ss_conf 87799995787788888999999998718754999995034115777765322797489971698788742256884212
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999998
Q gi|255764477|r 177 IEAIEKETQKMLKYILKI 194 (199)
Q Consensus 177 ~~~l~~~i~~~~~~i~~l 194 (199)
.......++++.+.+.++
T Consensus 236 ~~~v~~~i~~I~~~l~~~ 253 (255)
T COG3640 236 EPEVLKEIEEIAERLIKL 253 (255)
T ss_pred CHHHHHHHHHHHHHHHHC
T ss_conf 355578999999999850
No 150
>KOG2702 consensus
Probab=96.09 E-value=0.0018 Score=42.21 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=39.1
Q ss_pred CCCCCCCCC-CCCCCC-CCC---CCCEEEEEEECCCHHHHHHHHHHC---C--CCHHHHHHHHHC
Q ss_conf 476333456-432555-875---642278999521113568888717---9--898999999972
Q gi|255764477|r 102 GEKIVFFDT-PLLFEK-RKE---YLFDAVVVVTCSFETQRERVLSRK---K--HTEENFLFILSK 156 (199)
Q Consensus 102 ~~~~vv~e~-pLL~E~-~~~---~~~d~vi~V~a~~~~r~~Rl~~R~---~--~s~e~~~~~~~~ 156 (199)
..+++++|. =||++. .|. +.+|..++++.+.+...+|+.+|. | .+.+++..|.++
T Consensus 234 ~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~RHl~sGl~~t~~ea~er~d~ 298 (323)
T KOG2702 234 FTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKRHLQSGLVTTIAEARERFDS 298 (323)
T ss_pred CCEEEEEECCEEEECCCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
T ss_conf 63499995538885386688899874443333353888999998876124665888898763264
No 151
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.09 E-value=0.011 Score=37.19 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=29.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----C-CCE--EEEHHHHHHHHH
Q ss_conf 5999888866678999999997----7-986--999049999985
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----E-KIP--VISSDDIVDKLY 39 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~-G~~--v~~aD~i~~~l~ 39 (199)
+.|=+||-.||||||+|+.|.. . |.+ ++|-|.+-+.|-
T Consensus 393 ~tiwlTGLsgsGKsTiA~al~~~L~~~~~~~v~lLDGD~~R~~l~ 437 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMAKLMEMRGRPVTLLDGDVVRKHLS 437 (568)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHC
T ss_conf 499984578887769999999999971892799954688874215
No 152
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.09 E-value=0.0099 Score=37.56 Aligned_cols=29 Identities=45% Similarity=0.617 Sum_probs=25.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEE
Q ss_conf 5999888866678999999997-7986999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVIS 30 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~ 30 (199)
.+.-+||-.||||||..+.|++ +||.+..
T Consensus 46 ~iLlLtGPaG~GKTTTI~lLAkeLG~ei~E 75 (490)
T pfam03215 46 LILLLTGPSGCGKSTTVKVLSKELGIEIIE 75 (490)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEEE
T ss_conf 189987989988999999999975968998
No 153
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=96.08 E-value=0.0076 Score=38.29 Aligned_cols=124 Identities=19% Similarity=0.065 Sum_probs=62.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHH--HHHHHHHHHHHHHHHHHH-CC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 95999888866678999999997-798699904999--998500001135665310-00-12221110001111001246
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIV--DKLYHYEAVDIIKKTFPR-SI-QNNKVNKARLLGILQKSPAK 75 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~--~~l~~~~~~~~i~~~fg~-~i-~~~~i~r~~l~~~vf~~~~~ 75 (199)
|.+..|.|..|+|||..|-.|++ .|++|+++|.+- +++--..+...-.+..|. -+ .+ -..|.+=+++-.+.
T Consensus 1 m~l~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~Q~y~el~igs~rp~~~El~gT~RiYL~----~R~l~~Gii~a~eA 76 (232)
T pfam01745 1 MGLYLIWGATCTGKTAEAIALAKETGWPVIVLDRVQCCSQLATGSGRPLPAELQGTRRIYLD----NRPLSEGIIDAEEA 76 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHHCCCCEEEEC----CCCCCCCCCCHHHH
T ss_conf 92689978877771699999999959977962034430011367789997996575269861----67343466488999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCC--CCCCCEEEEEE----ECCCHHHHHHHHHH
Q ss_conf 78887534899999999766774202476333456---4325558--75642278999----52111356888871
Q gi|255764477|r 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT---PLLFEKR--KEYLFDAVVVV----TCSFETQRERVLSR 142 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~---pLL~E~~--~~~~~d~vi~V----~a~~~~r~~Rl~~R 142 (199)
...|-. .+......+ -+|+|. -||-.-- .....|+-|.| ..+++.=+.|.++|
T Consensus 77 ~~~Li~------------~V~~~~~~~--glILEGGSISLl~~ma~~~~w~~~f~w~v~r~~l~d~~~f~~ra~~R 138 (232)
T pfam01745 77 HDRLIA------------EVTSHKDEG--GVILEGGSISLLKRMAQSPYWNAGFPWHVKRMRLPDRDVFLAQAKAR 138 (232)
T ss_pred HHHHHH------------HHHCCCCCC--CEEEECCHHHHHHHHHHCHHHCCCCEEEEEEEECCCHHHHHHHHHHH
T ss_conf 999999------------996046678--66872750999999975734148964899997479878999999999
No 154
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.05 E-value=0.0046 Score=39.67 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCEEEEEEECCC
Q ss_conf 99766774202476333456--4325558756422789995211
Q gi|255764477|r 91 EKKILHDLSCRGEKIVFFDT--PLLFEKRKEYLFDAVVVVTCSF 132 (199)
Q Consensus 91 ~~~~i~~~~~~~~~~vv~e~--pLL~E~~~~~~~d~vi~V~a~~ 132 (199)
..+.+..+...+++++++|- .==-|...-+..|-+++|..|.
T Consensus 132 t~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 132 TREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCEEEEEECCC
T ss_conf 99999999861898899981478841557765216689996578
No 155
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=96.01 E-value=0.0038 Score=40.19 Aligned_cols=19 Identities=58% Similarity=0.714 Sum_probs=17.2
Q ss_pred EEECCCCCCHHHHHHHHHH
Q ss_conf 9888866678999999997
Q gi|255764477|r 5 GLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 5 gitG~igSGKStv~~~l~~ 23 (199)
-++|+||.||||||+++.+
T Consensus 46 iFKGNPGTGKTTVAR~~gk 64 (261)
T TIGR02881 46 IFKGNPGTGKTTVARLLGK 64 (261)
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 7427866843899999999
No 156
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.98 E-value=0.0051 Score=39.37 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
-|-|.||.||||||.|+-+=.
T Consensus 141 NIlv~GGTGSGKTTLaNAlla 161 (315)
T TIGR02782 141 NILVVGGTGSGKTTLANALLA 161 (315)
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 889981458857999999999
No 157
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=95.97 E-value=0.0044 Score=39.74 Aligned_cols=28 Identities=39% Similarity=0.509 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEE
Q ss_conf 999888866678999999997-7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~ 30 (199)
++=|||.+||||||+.+.|++ +|+.+..
T Consensus 120 ~LLi~GPsGCgKsT~~k~LsKelg~~~~e 148 (670)
T TIGR00602 120 ILLITGPSGCGKSTTIKILSKELGIKVQE 148 (670)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78841755884478999998886445655
No 158
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=95.96 E-value=0.0057 Score=39.06 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=26.1
Q ss_pred EECCCCCCHHHHHHHHHH------CCCEEEEHHHHHHHH
Q ss_conf 888866678999999997------798699904999998
Q gi|255764477|r 6 LTGSIGTGKTTVAEFLKK------EKIPVISSDDIVDKL 38 (199)
Q Consensus 6 itG~igSGKStv~~~l~~------~G~~v~~aD~i~~~l 38 (199)
|.|.+||||||.|+-+.+ +...++|.|-.+..+
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e~~ 39 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAAENL 39 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 989898988999999999999779975999789866589
No 159
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=95.93 E-value=0.007 Score=38.50 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCEEEEEEECCC
Q ss_conf 976677420247633345643--25558756422789995211
Q gi|255764477|r 92 KKILHDLSCRGEKIVFFDTPL--LFEKRKEYLFDAVVVVTCSF 132 (199)
Q Consensus 92 ~~~i~~~~~~~~~~vv~e~pL--L~E~~~~~~~d~vi~V~a~~ 132 (199)
...+.-+...+.+++++|--= =-|.......|.+++|..|.
T Consensus 111 ~~~i~lleaaGfD~IivETVGVGQsE~~v~~~aD~~llv~~Pg 153 (267)
T pfam03308 111 REAILLLDAAGFDVIIIETVGVGQSEVDIANMADTFVLVTIPG 153 (267)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCEEEEEECCC
T ss_conf 9999999977999999924777753035554157689995588
No 160
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=95.91 E-value=0.0063 Score=38.80 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||+|..||||||....|.=+
T Consensus 33 ~~~IvG~SGSGKSTLLHlLGGL 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 3798736787168999987306
No 161
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=95.88 E-value=0.1 Score=31.16 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=28.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC-CCEEEEHHHHHHHHH
Q ss_conf 59998888666789999999977-986999049999985
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKLY 39 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~-G~~v~~aD~i~~~l~ 39 (199)
+.|.|.|+-.|||||+++-|+.. +.+. +-+.+|+..
T Consensus 232 KkVvIlG~ESTGKTTL~~~LA~~ynT~~--v~EYgReY~ 268 (411)
T PRK08099 232 RTVAILGGESSGKSTLVNKLANIFNTTS--AWEYGRDYV 268 (411)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCC--CHHHHHHHH
T ss_conf 6899989998888999999999978995--189899999
No 162
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=95.79 E-value=0.0082 Score=38.07 Aligned_cols=21 Identities=52% Similarity=0.705 Sum_probs=18.1
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 599988886667899999999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~ 22 (199)
.+|||||.+|+||||...-|-
T Consensus 50 ~~iGiTG~pG~GKStli~~l~ 70 (325)
T PRK09435 50 LRIGITGVPGVGKSTFIEALG 70 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 599742799986889999999
No 163
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.66 E-value=0.01 Score=37.51 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||+++.+.-
T Consensus 31 ~iaIvG~sGsGKSTLl~ll~g 51 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999989999999823
No 164
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=95.65 E-value=0.0088 Score=37.88 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+.|.|..||||||.++.|=+
T Consensus 502 k~tiVGmSGSGKsTLaKLLV~ 522 (710)
T TIGR01193 502 KITIVGMSGSGKSTLAKLLVG 522 (710)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 489973679748999987520
No 165
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=95.63 E-value=0.0086 Score=37.93 Aligned_cols=23 Identities=43% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 59998888666789999999977
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~ 24 (199)
+-|-|.||.||||||..+.+=+.
T Consensus 159 knIii~GGTgSGKTTf~kal~~~ 181 (328)
T TIGR02788 159 KNIIISGGTGSGKTTFLKALVKE 181 (328)
T ss_pred CEEEEEECCCCHHHHHHHHHHHC
T ss_conf 91999906897189999999732
No 166
>KOG4203 consensus
Probab=95.60 E-value=0.0057 Score=39.06 Aligned_cols=59 Identities=22% Similarity=0.216 Sum_probs=38.7
Q ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHC----CCCHHHHHHHHHC-CCCH-HHH----HHHCCEEEECCC
Q ss_conf 875642278999521113568888717----9898999999972-9997-899----986898998799
Q gi|255764477|r 117 RKEYLFDAVVVVTCSFETQRERVLSRK----KHTEENFLFILSK-QMNE-KDK----ISRADYVINTEG 175 (199)
Q Consensus 117 ~~~~~~d~vi~V~a~~~~r~~Rl~~R~----~~s~e~~~~~~~~-Q~~~-~~k----~~~aD~vI~N~~ 175 (199)
....|++.-++++.+.+.|..|...|+ |.+.+.+..+... =.|. +++ +..||.+|..-+
T Consensus 169 ~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203 169 RVRDLFTMKLFVDTDADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred HHHHHHCCEEEEECCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCC
T ss_conf 999873342798358642468987255465332477888998731486088886378873122022245
No 167
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=95.56 E-value=0.011 Score=37.37 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=31.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH-----HCCCEEEEHHHHHHHHH
Q ss_conf 599988886667899999999-----77986999049999985
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLK-----KEKIPVISSDDIVDKLY 39 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~-----~~G~~v~~aD~i~~~l~ 39 (199)
.+|+|.|..||||||+.+.+- +.|=-++|-+++.+=.+
T Consensus 389 ~~vALVGRSGSGKsTlv~LlPRFy~p~~G~IllDG~~l~d~~L 431 (603)
T TIGR02203 389 ETVALVGRSGSGKSTLVNLLPRFYEPDSGQILLDGVDLQDYTL 431 (603)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCH
T ss_conf 3599870688538999855236604588856527840443026
No 168
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=95.56 E-value=0.0084 Score=38.01 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 599988886667899999999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~ 22 (199)
+.||+-|..||||||.++.|=
T Consensus 39 e~~gLLG~SG~GKSTLArlLl 59 (267)
T TIGR02769 39 ETVGLLGRSGCGKSTLARLLL 59 (267)
T ss_pred CEEEECCCCCCCHHHHHHHHH
T ss_conf 505523678873778999987
No 169
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.45 E-value=0.013 Score=36.82 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||+++.+..
T Consensus 351 ~vaiVG~SGsGKSTL~~LL~r 371 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899989999977999999828
No 170
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.014 Score=36.71 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEE
Q ss_conf 999888866678999999997-----7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~ 30 (199)
.+||+|..||||||+.+.+.- .|--.+|
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~id 61 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILID 61 (236)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 999999999989999999743854887489999
No 171
>KOG0635 consensus
Probab=95.42 E-value=0.0063 Score=38.79 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=28.4
Q ss_pred EEEEEECCCCCCHHHHHHHHH----HCC--CEEEEHHHHHHHHH
Q ss_conf 599988886667899999999----779--86999049999985
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLK----KEK--IPVISSDDIVDKLY 39 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~----~~G--~~v~~aD~i~~~l~ 39 (199)
.+|=+||..||||||++-.|+ ++| ..++|-|.+-|-|-
T Consensus 32 cviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN 75 (207)
T KOG0635 32 CVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN 75 (207)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 68997425778802599999999986586589854854010434
No 172
>KOG1384 consensus
Probab=95.41 E-value=0.015 Score=36.39 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHY 41 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~ 41 (199)
++|+|.|-+|||||-+|==|+. ++..+|+||.+ ++|+.
T Consensus 8 KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm--QvYkG 46 (348)
T KOG1384 8 KVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM--QVYKG 46 (348)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCE--EEECC
T ss_conf 5999955777770466788897578646515633--56327
No 173
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.40 E-value=0.013 Score=36.78 Aligned_cols=21 Identities=29% Similarity=0.868 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+.+.+.-
T Consensus 30 ~vaivG~sGsGKSTll~ll~g 50 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999859999999967
No 174
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.39 E-value=0.17 Score=29.87 Aligned_cols=120 Identities=21% Similarity=0.148 Sum_probs=60.1
Q ss_pred EEEE-CCCCCCHHHHHHHHHHCC--CEEEEHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9988-886667899999999779--8699904999---998500001135665310001222111000111100124678
Q gi|255764477|r 4 IGLT-GSIGTGKTTVAEFLKKEK--IPVISSDDIV---DKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLE 77 (199)
Q Consensus 4 Igit-G~igSGKStv~~~l~~~G--~~v~~aD~i~---~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~ 77 (199)
|+|+ |.=|.||||++--|+..| .-++|+|--. +-+++.+...... ... ..... .+ ++...
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~l~~V~liD~D~~~~n~~~~l~~~~~~~~~------~~~-~~~~~----~~--~~~~~- 67 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALLKNVVLADCDVDAPNLHLFLKPEIEEEED------FIV-GGKKA----VI--DPELC- 67 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCEE------EEE-CCCCC----EE--CHHHH-
T ss_conf 899958998609999999999742871999418998577771876563212------230-46533----51--50665-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCEEEEEEECCCHHHHH
Q ss_conf 8875348999999997667742024763334564325558---75642278999521113568
Q gi|255764477|r 78 ILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKR---KEYLFDAVVVVTCSFETQRE 137 (199)
Q Consensus 78 ~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~---~~~~~d~vi~V~a~~~~r~~ 137 (199)
......-|.+................+|+++|.|-=+... .-...|.++.|..|....+.
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~~~~~~~D~viiD~Ppg~~~~~~~al~~ad~~iiVttP~~~si~ 130 (179)
T cd03110 68 ISCGLCGKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLH 130 (179)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf 323517688999999999986443799899818999757899999739949998199478999
No 175
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.36 E-value=0.014 Score=36.64 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+++.+.-
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~g 62 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999849999999964
No 176
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.34 E-value=0.019 Score=35.84 Aligned_cols=29 Identities=41% Similarity=0.531 Sum_probs=24.1
Q ss_pred CEEEEEECCCCCCHHHHHHHH----HHCCCEEE
Q ss_conf 959998888666789999999----97798699
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFL----KKEKIPVI 29 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l----~~~G~~v~ 29 (199)
|+++|+||--+|||||+.+-+ .++|+.|-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVA 34 (161)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 728999962799734289999999975793799
No 177
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.015 Score=36.49 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||+.+.+.-
T Consensus 31 ~vaivG~sGsGKSTLl~ll~g 51 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999809999999966
No 178
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.33 E-value=0.036 Score=34.03 Aligned_cols=122 Identities=19% Similarity=0.314 Sum_probs=63.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHH--------HH---HHHHH-HHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 999888866678999999997-----79869990499--------99---98500-001135665310001222111000
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDI--------VD---KLYHY-EAVDIIKKTFPRSIQNNKVNKARL 65 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~aD~i--------~~---~l~~~-~~~~~i~~~fg~~i~~~~i~r~~l 65 (199)
++||.|-.||||||.++.+-. .|--.|+-.++ .. +++.. +..+.....+|..+..|+..|=.+
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 78999368887787999997283888726998685311136667999999999980988778633883037313356999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCC--CCCCCCCCCCCCCCEEEEEEE
Q ss_conf 111100124678--887534899999999766774202-4763334--564325558756422789995
Q gi|255764477|r 66 LGILQKSPAKLE--ILEKIVHPMVRMHEKKILHDLSCR-GEKIVFF--DTPLLFEKRKEYLFDAVVVVT 129 (199)
Q Consensus 66 ~~~vf~~~~~l~--~L~~iiHP~V~~~~~~~i~~~~~~-~~~~vv~--e~pLL~E~~~~~~~d~vi~V~ 129 (199)
+..+--+|+..- ...+-+---|+..+.+.+...+.. +-.++|+ |.+. ....+|.+.+.+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~~lq~~~~lt~lFIsHDl~v-----v~~isdri~Vmy 184 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-----VRYISDRIAVMY 184 (268)
T ss_pred HHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHH-----HHHHCCCEEEEE
T ss_conf 9998509867974372110124679999999999999859758999877776-----664044478875
No 179
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.015 Score=36.42 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEH
Q ss_conf 999888866678999999997-----79869990
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISS 31 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~a 31 (199)
.+||+|..||||||+.+.+.- .|--.++-
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 63 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDG 63 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 9999989998299999999667667886899999
No 180
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.31 E-value=0.015 Score=36.38 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||.++.+.-
T Consensus 30 ~vaIvG~sGsGKSTLl~ll~g 50 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999809999999966
No 181
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.24 E-value=0.018 Score=35.86 Aligned_cols=21 Identities=48% Similarity=0.654 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+.|||.+||||||+++.|.+
T Consensus 45 ~~lltGe~GtGKTtllr~l~~ 65 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 599972998988999999998
No 182
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.21 E-value=0.017 Score=36.04 Aligned_cols=28 Identities=25% Similarity=0.563 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEE
Q ss_conf 999888866678999999997-----7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~ 30 (199)
.+||+|..||||||+.+.+.- .|--.+|
T Consensus 343 ~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I~id 375 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFH 375 (569)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 899879999987999999997764267874650
No 183
>PRK04195 replication factor C large subunit; Provisional
Probab=95.20 E-value=0.02 Score=35.60 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEH
Q ss_conf 999888866678999999997-79869990
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISS 31 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~a 31 (199)
.+=++|.+|+||||++..+++ +|+.++..
T Consensus 42 ~lLL~GPpGvGKTT~a~~lAk~~g~~viEl 71 (403)
T PRK04195 42 ALLLYGPPGVGKTSLAHALANDYGWEVIEL 71 (403)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 699889399879999999999849985997
No 184
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.20 E-value=0.018 Score=36.00 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||.++.+.-
T Consensus 363 ~vaiVG~SGsGKSTL~~LL~g 383 (585)
T PRK13657 363 TVAIVGPTGAGKSTLINLLHR 383 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899988989869999999860
No 185
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.19 E-value=0.018 Score=35.91 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+.+.|..
T Consensus 32 ~vaIvG~sGsGKSTLl~lL~g 52 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999979999999960
No 186
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.18 E-value=0.018 Score=35.97 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||+.+.|.-
T Consensus 369 ~vaiVG~SGsGKSTL~~LL~r 389 (575)
T PRK11160 369 KVALLGRTGCGKSTLLQLLTR 389 (575)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899988999759999999862
No 187
>KOG1970 consensus
Probab=95.14 E-value=0.023 Score=35.29 Aligned_cols=28 Identities=36% Similarity=0.500 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHH-HCCCEEEE
Q ss_conf 99988886667899999999-77986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK-KEKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~-~~G~~v~~ 30 (199)
+.=|||..||||||+.+.|. ++|+.++.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCEEEE
T ss_conf 79985798887131999999864802123
No 188
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.13 E-value=0.018 Score=35.94 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEH
Q ss_conf 999888866678999999997-----79869990
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISS 31 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~a 31 (199)
.+||+|..||||||+.+.+.- .|--.++-
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 65 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDG 65 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 9999999998599999999672547865899999
No 189
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.12 E-value=0.019 Score=35.79 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 59998888666789999999977
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~ 24 (199)
.++||.|..||||||+++.+..+
T Consensus 377 e~vaIVG~SGsGKSTl~~LL~g~ 399 (588)
T PRK11174 377 QRVALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 78999899986499999999872
No 190
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.12 E-value=0.019 Score=35.77 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||+++.+..
T Consensus 369 ~vaIVG~SGsGKSTL~~LL~r 389 (593)
T PRK10790 369 FVALVGHTGSGKSTLASLLMG 389 (593)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899879998868999999998
No 191
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.09 E-value=0.019 Score=35.75 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||+.+.+.-
T Consensus 65 ~vaIVG~sGSGKSTLl~lL~g 85 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999819999999957
No 192
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=95.08 E-value=0.13 Score=30.57 Aligned_cols=130 Identities=23% Similarity=0.259 Sum_probs=63.6
Q ss_pred EEEEEECC-CCCCHHHHHHHHH----H-CCCE--EEEHHHHH---HHHHHHHHHHHHHHH-HHHCC-CCCCCCCCCHH--
Q ss_conf 59998888-6667899999999----7-7986--99904999---998500001135665-31000-12221110001--
Q gi|255764477|r 2 LIIGLTGS-IGTGKTTVAEFLK----K-EKIP--VISSDDIV---DKLYHYEAVDIIKKT-FPRSI-QNNKVNKARLL-- 66 (199)
Q Consensus 2 ~iIgitG~-igSGKStv~~~l~----~-~G~~--v~~aD~i~---~~l~~~~~~~~i~~~-fg~~i-~~~~i~r~~l~-- 66 (199)
++|+||.. +|.||||++--|+ . -|-. ++|||--- +..++-+...-+.+. .+..- .+..+-+....
T Consensus 36 kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~l~~~~~~Gl~d~L~~~~~~l~~~i~~~~~~~l 115 (207)
T TIGR03018 36 NLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIGRL 115 (207)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHCCCCCCHHHHEECCCCCCE
T ss_conf 09999789999988999999999999724985999953578997100138899998567743899875672342688755
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC----CCCCCEEEEEEECCCHHHHHH
Q ss_conf 111001---2467888753489999999976677420247-63334564325558----756422789995211135688
Q gi|255764477|r 67 GILQKS---PAKLEILEKIVHPMVRMHEKKILHDLSCRGE-KIVFFDTPLLFEKR----KEYLFDAVVVVTCSFETQRER 138 (199)
Q Consensus 67 ~~vf~~---~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~-~~vv~e~pLL~E~~----~~~~~d~vi~V~a~~~~r~~R 138 (199)
..+..- +...+.|. ...+...+...+.... .+|++|.|-+.... +...+|.+++|.-.-..+..-
T Consensus 116 ~vlpag~~~~~~~~ll~-------s~~~~~li~~lr~~yd~~~VIiDtPPvl~~~Da~~la~~~D~vllVvr~~~t~~~~ 188 (207)
T TIGR03018 116 SLLPAGRRHPNPTELLA-------SQRMRSLLHELARRYPDRIIIIDTPPLLVFSEARALARLVGQIVLVVEEGRTTQEA 188 (207)
T ss_pred EEEECCCCCCCHHHHHH-------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHH
T ss_conf 57516898996676542-------69999999999973796579983896223236999999689699999799878999
No 193
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=95.06 E-value=0.026 Score=34.93 Aligned_cols=28 Identities=36% Similarity=0.762 Sum_probs=22.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHH------CCCEEE
Q ss_conf 5999888866678999999997------798699
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK------EKIPVI 29 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~------~G~~v~ 29 (199)
++|||.|.=||||||+.+.+++ .++.++
T Consensus 21 ~vIgl~G~WGsGKTs~l~~~~~~L~~~~~~~~~v 54 (301)
T pfam07693 21 FVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHIV 54 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 7999989899999999999999986136882699
No 194
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.00 E-value=0.021 Score=35.46 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
++||+|..||||||+.+.+.
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~ 48 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999980999999985
No 195
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=95.00 E-value=0.02 Score=35.67 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 599988886667899999999779
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEK 25 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G 25 (199)
.-|||||..|+||||.-+.|.-.|
T Consensus 36 lnIavtGesG~GkSsfINalRg~g 59 (375)
T pfam05049 36 LKIAVTGDSGNGKSSFINALRGIG 59 (375)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 479985489986789999874789
No 196
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.98 E-value=0.023 Score=35.31 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEE
Q ss_conf 999888866678999999997-----7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~ 30 (199)
.+||+|..||||||+++.+.- .|--.+|
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~~p~~G~I~id 68 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEAEEGKIEID 68 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 999999999879999999998728888789999
No 197
>KOG0733 consensus
Probab=94.98 E-value=0.22 Score=29.06 Aligned_cols=133 Identities=23% Similarity=0.320 Sum_probs=66.4
Q ss_pred EEEECCCCCCHHHHHHHHH-HCCCEEEE--HHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHH
Q ss_conf 9988886667899999999-77986999--04999998500001135665310001222--1110001111001246788
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLK-KEKIPVIS--SDDIVDKLYHYEAVDIIKKTFPRSIQNNK--VNKARLLGILQKSPAKLEI 78 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~-~~G~~v~~--aD~i~~~l~~~~~~~~i~~~fg~~i~~~~--i~r~~l~~~vf~~~~~l~~ 78 (199)
+-+-|-+|||||.+|+-++ ++|.|.++ |-.++..+. .+.-+.+.+.|.....+-+ +--+.+-.+-=.-...-+.
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS-GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqre 304 (802)
T KOG0733 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS-GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQRE 304 (802)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHCCCC-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 164489986478999997521288548514146531557-5228999999998736697599851100136440457889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCC---CCCCCCCCC--CCCEEEEEEECCCHHHHHHHHH
Q ss_conf 8753489999999976677420---2476333456---432555875--6422789995211135688887
Q gi|255764477|r 79 LEKIVHPMVRMHEKKILHDLSC---RGEKIVFFDT---PLLFEKRKE--YLFDAVVVVTCSFETQRERVLS 141 (199)
Q Consensus 79 L~~iiHP~V~~~~~~~i~~~~~---~~~~~vv~e~---pLL~E~~~~--~~~d~vi~V~a~~~~r~~Rl~~ 141 (199)
+|.-|-- ........... .+.+++|+-+ |=-++..+. -.||.=|.+..|.+...+++++
T Consensus 305 MErRiVa----QLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733 305 MERRIVA----QLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILR 371 (802)
T ss_pred HHHHHHH----HHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHH
T ss_conf 9999999----999851002566668997699824789765587773256553235306896688999999
No 198
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.021 Score=35.45 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+.+.+.-
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~g 50 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999839999999976
No 199
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.97 E-value=0.022 Score=35.35 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEE
Q ss_conf 999888866678999999997-----7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~ 30 (199)
.|||+|..||||||+++.+.- .|--.+|
T Consensus 49 ~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~id 81 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVID 81 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 999999999819999999960566788889999
No 200
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.94 E-value=0.023 Score=35.27 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 38 ~vaivG~nGsGKSTLlk~l~G 58 (273)
T PRK13632 38 YVAILGHNGSGKSTISKILTG 58 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999869999999973
No 201
>PRK06761 hypothetical protein; Provisional
Probab=94.91 E-value=0.028 Score=34.73 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHH----HHHHHHCCCEEE
Q ss_conf 5999888866678999----999997798699
Q gi|255764477|r 2 LIIGLTGSIGTGKTTV----AEFLKKEKIPVI 29 (199)
Q Consensus 2 ~iIgitG~igSGKStv----~~~l~~~G~~v~ 29 (199)
+.|-|-|-+||||||. +++|.++|..+-
T Consensus 3 kLIiIEGlPGsGKSTta~~l~d~L~~~g~~v~ 34 (281)
T PRK06761 3 KLIIIEGLPGFGKSTTAHLLNDKLSQLKIEVE 34 (281)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 17999668999801499999999986698538
No 202
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=94.89 E-value=0.026 Score=34.88 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCEEEEHHHH
Q ss_conf 9998888666789999999977-----9869990499
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE-----KIPVISSDDI 34 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~-----G~~v~~aD~i 34 (199)
+++|.|.-||||||++..|+++ |=-.+|--.+
T Consensus 561 vvALVGPsGsGKStvaaLL~n~Y~Pt~G~vLlDg~Pl 597 (770)
T TIGR00958 561 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL 597 (770)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCH
T ss_conf 5998658998399999999855789865687768461
No 203
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.84 E-value=0.019 Score=35.81 Aligned_cols=21 Identities=38% Similarity=0.773 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||+++.+..
T Consensus 370 ~vaiVG~SGsGKSTL~~LL~g 390 (581)
T PRK11176 370 TVALVGRSGSGKSTIANLLTR 390 (581)
T ss_pred EEECCCCCCCCHHHHHHHHHH
T ss_conf 431228999867899999985
No 204
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.83 E-value=0.038 Score=33.89 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHH----HHCCCEEEE
Q ss_conf 9998888666789999999----977986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL----KKEKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l----~~~G~~v~~ 30 (199)
+||++|--||||||+..-| .++|+.|=-
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~ 35 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPALCARGIRPGL 35 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 79999469999999999999999987984999
No 205
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.82 E-value=0.023 Score=35.21 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 22 ~vaiiG~sGsGKSTLl~~l~G 42 (276)
T PRK13634 22 YVAIIGHTGSGKSTLLQHLNG 42 (276)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999699999999974
No 206
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=94.80 E-value=0.01 Score=37.49 Aligned_cols=44 Identities=32% Similarity=0.396 Sum_probs=32.2
Q ss_pred EEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 988886667899999999779869990499999850000--113566531000122211100
Q gi|255764477|r 5 GLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEA--VDIIKKTFPRSIQNNKVNKAR 64 (199)
Q Consensus 5 gitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~--~~~i~~~fg~~i~~~~i~r~~ 64 (199)
-|||-.||||||.-+-| |-+.++ +..|.+.||+.-.||++-+.-
T Consensus 8 vvTGFLGaGKTTLiRhl----------------L~NA~GkRiAvIVNEFGd~GiDG~iLk~C 53 (349)
T TIGR02475 8 VVTGFLGAGKTTLIRHL----------------LENAEGKRIAVIVNEFGDLGIDGEILKAC 53 (349)
T ss_pred EEECCCCCCHHHHHHHH----------------HHCCCCCEEEEEEECCCCCCCCHHHHHHC
T ss_conf 87375676158999999----------------71747876999985255606367999643
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.80 E-value=0.31 Score=28.23 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHH-CCCEEEEHH--HHHHHHHH
Q ss_conf 99888866678999999997-798699904--99999850
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EKIPVISSD--DIVDKLYH 40 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G~~v~~aD--~i~~~l~~ 40 (199)
|=+.|-+|||||..|+..+. .|.|.++.| .+....++
T Consensus 262 vLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~~~vG 301 (491)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFGGIVG 301 (491)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCC
T ss_conf 9997999987899999998663894699667997560067
No 208
>KOG1969 consensus
Probab=94.80 E-value=0.047 Score=33.34 Aligned_cols=39 Identities=33% Similarity=0.464 Sum_probs=30.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC-CCEEEE---HHHHHHHHHH
Q ss_conf 59998888666789999999977-986999---0499999850
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE-KIPVIS---SDDIVDKLYH 40 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~-G~~v~~---aD~i~~~l~~ 40 (199)
+|.=++|-+|-||||+|.+.+.+ ||.|++ +|+-......
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~ 369 (877)
T KOG1969 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVK 369 (877)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 0687536887872479999998628548873255543478899
No 209
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.80 E-value=0.026 Score=34.88 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||+++.+.-
T Consensus 35 ~vaivG~nGsGKSTL~k~l~G 55 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNG 55 (279)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999659999999972
No 210
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.028 Score=34.75 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 30 ~vaiiG~nGsGKSTL~~~l~G 50 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999809999999970
No 211
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.76 E-value=0.025 Score=35.08 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEE
Q ss_conf 999888866678999999997-----7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~ 30 (199)
.|||+|..||||||.++.+.- .|--.+|
T Consensus 493 ~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i~id 525 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 899980589878899998556758998879989
No 212
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.76 E-value=0.026 Score=34.97 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||..+.+.-
T Consensus 38 ~v~ivG~sGsGKSTLl~~i~G 58 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998589999999966
No 213
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.027 Score=34.86 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
.+||.|.-||||||+++.+.-+
T Consensus 36 ~vaiiG~nGsGKSTL~~~l~Gl 57 (283)
T PRK13640 36 WTALIGHNGSGKSTISKLINGL 57 (283)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999998799999999640
No 214
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.028 Score=34.74 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|.-||||||.++.+.-+
T Consensus 39 ~v~iiG~nGsGKSTL~r~l~gl 60 (281)
T PRK13633 39 FLVILGHNGSGKSTIAKHMNAL 60 (281)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999998499999999758
No 215
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.76 E-value=0.028 Score=34.77 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
++||+|..||||||+.+.+.
T Consensus 33 ~~~IvG~sGsGKSTLl~~i~ 52 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALL 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHC
T ss_conf 99999999985899999981
No 216
>PRK06620 hypothetical protein; Validated
Probab=94.75 E-value=0.045 Score=33.46 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=25.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEEHHHHH
Q ss_conf 9998888666789999999977-98699904999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIV 35 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~-G~~v~~aD~i~ 35 (199)
.+-|+|..|||||+.++++++. ++.++++....
T Consensus 46 ~l~I~Gp~gSGKTHL~~i~~~~~~a~~~~~~~~~ 79 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFN 79 (214)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECHHHCC
T ss_conf 5999879999889999999998285881512145
No 217
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.74 E-value=0.26 Score=28.62 Aligned_cols=95 Identities=27% Similarity=0.326 Sum_probs=55.1
Q ss_pred EEEEE-CCCCCCHHHHHHHHH----HCCC--EEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99988-886667899999999----7798--6999049999985000011356653100012221110001111001246
Q gi|255764477|r 3 IIGLT-GSIGTGKTTVAEFLK----KEKI--PVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAK 75 (199)
Q Consensus 3 iIgit-G~igSGKStv~~~l~----~~G~--~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~ 75 (199)
+|+++ |.-|.||||++--|+ ++|+ .++|+|- +.+. +.. ++.-
T Consensus 1 vi~v~s~kggvgkst~~~~la~~l~~~g~~v~~~d~di-----~gps------------ip~-----------~~rG--- 49 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI-----YGPS------------IPK-----------MWRG--- 49 (169)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC-----CCCC------------CCE-----------EEEC---
T ss_conf 98997499988199999999999998799789997137-----9997------------550-----------1204---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---------CCCEEEEEEECCCHHHHHHHHH
Q ss_conf 78887534899999999766774202476333456432555875---------6422789995211135688887
Q gi|255764477|r 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKE---------YLFDAVVVVTCSFETQRERVLS 141 (199)
Q Consensus 76 l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~---------~~~d~vi~V~a~~~~r~~Rl~~ 141 (199)
|.+..-++.++........+|+++|.|- |.. -..|.+|+|++|....+.-+.+
T Consensus 50 ---------p~~~~~i~q~l~~~~w~~lDyLIID~PP----GtgD~~lt~~~~~~~d~~IvVTTP~~~s~~Da~r 111 (169)
T cd02037 50 ---------PMKMGAIKQFLTDVDWGELDYLVIDMPP----GTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRK 111 (169)
T ss_pred ---------HHHHHHHHHHHHHCCCCCCCEEEEECCC----CCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf ---------7389999999985254667889996899----9870778798750567479994695889999999
No 218
>KOG3877 consensus
Probab=94.74 E-value=0.015 Score=36.39 Aligned_cols=41 Identities=34% Similarity=0.484 Sum_probs=32.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CC---CEEEEHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-79---86999049999985000
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EK---IPVISSDDIVDKLYHYE 42 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G---~~v~~aD~i~~~l~~~~ 42 (199)
++|.+-|.||||||++|+-|++ +| ||-|++|.+.-+-|+.+
T Consensus 72 kvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D 116 (393)
T KOG3877 72 KVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGND 116 (393)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCC
T ss_conf 079985775467016999999971972156434551430356764
No 219
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=94.72 E-value=0.034 Score=34.21 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=26.9
Q ss_pred CEEEEEECC-CCCCHHHHHHHHHH-CCCE----EEEHHHHH
Q ss_conf 959998888-66678999999997-7986----99904999
Q gi|255764477|r 1 MLIIGLTGS-IGTGKTTVAEFLKK-EKIP----VISSDDIV 35 (199)
Q Consensus 1 M~iIgitG~-igSGKStv~~~l~~-~G~~----v~~aD~i~ 35 (199)
||.|+|||| =|.||||++--|.. +|-. .+|+|--+
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~~~~~l~DcDVe~ 41 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDKYKLVLADCDVEA 41 (284)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 92799963688777022899999983665224777657789
No 220
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.72 E-value=0.03 Score=34.55 Aligned_cols=21 Identities=43% Similarity=0.759 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|..||||||+++.+.-
T Consensus 319 ~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899988999998999999948
No 221
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.71 E-value=0.027 Score=34.83 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||+|..||||||+.+.+.-
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G 50 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999999998759999999986
No 222
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.71 E-value=0.031 Score=34.45 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
.+||.|.-||||||+++.+.-+
T Consensus 37 ~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999799999999649
No 223
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.69 E-value=0.029 Score=34.64 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~G 53 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999869999999972
No 224
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.03 Score=34.51 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~G 55 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999819999999970
No 225
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.65 E-value=0.033 Score=34.28 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||..+.+.-
T Consensus 35 ~~~i~G~sGsGKSTLlk~i~g 55 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999999999999964
No 226
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.65 E-value=0.033 Score=34.30 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEH
Q ss_conf 999888866678999999997-----79869990
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISS 31 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~a 31 (199)
++||+|.-||||||..+.+.- .|-..++-
T Consensus 29 i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~~ 62 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 9999889998799999999778588985699999
No 227
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.64 E-value=0.031 Score=34.41 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+.+.+.-
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~g 52 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999989999999967
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.63 E-value=0.03 Score=34.51 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHH----HHHCCCEEEE
Q ss_conf 99888866678999999----9977986999
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEF----LKKEKIPVIS 30 (199)
Q Consensus 4 IgitG~igSGKStv~~~----l~~~G~~v~~ 30 (199)
+=|.|..|+|||.++.. |++.|++|.-
T Consensus 160 lyl~G~~G~GKTyL~~aian~La~~g~~v~~ 190 (306)
T PRK08939 160 LYLYGDFGVGKTYLLAAIANELAKKGVSSTL 190 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8898999998999999999999986992999
No 229
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.63 E-value=0.03 Score=34.52 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|.-||||||.++.+.-+
T Consensus 32 ~vaivG~nGsGKSTL~~~l~Gl 53 (276)
T PRK13650 32 WLSIIGHNGSGKSTTVRLIDGL 53 (276)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999998799999999738
No 230
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.62 E-value=0.07 Score=32.24 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9998888666789999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL 21 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l 21 (199)
+|.|.|+.||||||+.+-.
T Consensus 34 VisIIGsSGSGKSTfLRCi 52 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCI 52 (256)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999658998626899999
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=94.59 E-value=0.035 Score=34.10 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 599988886667899999999779
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEK 25 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G 25 (199)
.-|||||..||||||.-+.|.-.|
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl~ 25 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179995589986899999986889
No 232
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=94.57 E-value=0.041 Score=33.67 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCE
Q ss_conf 999888866678999999997-7986
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIP 27 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~ 27 (199)
+|.+.|..||||||.++.+.+ +|..
T Consensus 17 vi~L~G~LGaGKTtfvr~i~~~lg~~ 42 (123)
T pfam02367 17 VVLLSGDLGAGKTTFVRGLAKGLGIT 42 (123)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 99998887788999999999985998
No 233
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.55 E-value=0.035 Score=34.15 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||+++.+.-
T Consensus 29 ~~aliG~sGsGKSTLl~~l~g 49 (248)
T PRK11264 29 VVAIIGPSGSGKTTLLRCINL 49 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999809999999975
No 234
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.034 Score=34.19 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||.++.+.-
T Consensus 37 ~v~iiG~sGsGKSTLl~~i~G 57 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999409999999966
No 235
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.55 E-value=0.031 Score=34.44 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||+++.+.-
T Consensus 31 ~vgLVG~NGsGKSTLl~iL~G 51 (632)
T PRK11147 31 RVCLVGRNGAGKSTLMKILSG 51 (632)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999879999999838
No 236
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.51 E-value=0.031 Score=34.49 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 35 ~v~iiG~nGsGKSTLl~~l~G 55 (287)
T PRK13637 35 FVALIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999399999999973
No 237
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.50 E-value=0.035 Score=34.15 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||.++.+.-
T Consensus 35 ~vgLvG~NGaGKSTLlriLaG 55 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999719999999847
No 238
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.50 E-value=0.021 Score=35.57 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9998888666789999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL 21 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l 21 (199)
.|=|||..||||||-..-+
T Consensus 129 LiLVTGPTGSGKSTTlAsm 147 (350)
T TIGR01420 129 LILVTGPTGSGKSTTLASM 147 (350)
T ss_pred CEEEECCCCCCHHHHHHHH
T ss_conf 3898768898678999999
No 239
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.50 E-value=0.43 Score=27.30 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=82.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHH----HHHHHHHH-HHH--HHCCCC------CCCCCCCHHH
Q ss_conf 5999888866678999999997-79869990499999850----00011356-653--100012------2211100011
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYH----YEAVDIIK-KTF--PRSIQN------NKVNKARLLG 67 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~----~~~~~~i~-~~f--g~~i~~------~~i~r~~l~~ 67 (199)
++|=|-|..|+||||++..|+. +|+..+-+-+-+++++- ++....+. ..| ++.... ..-.+..
T Consensus 263 iiILIGGaSGvGKSTlAseLA~RLGI~~VIsTDsIREVMR~~is~el~P~Lh~SSy~Awk~L~~~~~~~~~~~~~~~--- 339 (492)
T PRK12337 263 LHVLLGGVSGTGKSVLAAELAYRLGITRVVPTDAIREVMRAMVSKDLLPTLHASTFNAWEALVPPGLGLPGEPTRVE--- 339 (492)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH---
T ss_conf 69996078886688899999996098810254479999998459764845777556888860873457777860768---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCCC-CEE-EEEEECCCHHHHHHHHH
Q ss_conf 1100124678887534899999999766774202476333456----43255587564-227-89995211135688887
Q gi|255764477|r 68 ILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDT----PLLFEKRKEYL-FDA-VVVVTCSFETQRERVLS 141 (199)
Q Consensus 68 ~vf~~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~----pLL~E~~~~~~-~d~-vi~V~a~~~~r~~Rl~~ 141 (199)
++-+=... -..+-+-+..-+.+++. .+.. +|+|. |=+......+. +-. +.+...+++.-.+|+..
T Consensus 340 vi~GF~~Q----v~~V~vGl~aVieRa~~----EG~S-vVIEGVHLvPg~i~~~~~e~~~vIp~mV~i~dEe~Hr~RF~~ 410 (492)
T PRK12337 340 LLAGFRDQ----VQQVSVGLKAVVRRSIL----EGTS-LVLEGVHLVPGYLQHAYQDGALTVPMLVALPDEEEHRRHFEL 410 (492)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHH----CCCC-EEEEEEEECHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHH
T ss_conf 99899999----99999999999999997----2886-799833307066666641587389999984767999999998
Q ss_pred HCCCC---------HHHHHHHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 17989---------89999999729997899986898998799989999999999999
Q gi|255764477|r 142 RKKHT---------EENFLFILSKQMNEKDKISRADYVINTEGTIEAIEKETQKMLKY 190 (199)
Q Consensus 142 R~~~s---------~e~~~~~~~~Q~~~~~k~~~aD~vI~N~~s~~~l~~~i~~~~~~ 190 (199)
|...+ .+.|..+...|--.-.+.+..+.=+.||.++++.-.++-.++-.
T Consensus 411 R~r~t~~~Rp~ekYLk~F~eIR~IQdyLv~rAre~gVPVI~n~~ldesvd~~~evi~~ 468 (492)
T PRK12337 411 RDRETAASRPLHRYMRHFEEIRLMQDHLLRLAREEDVPVLDGETLDESADKAVEVVLR 468 (492)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7514103686017999799999999999999987499820787667799999999999
No 240
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.032 Score=34.36 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|-.||||||+++.+.-+
T Consensus 40 ~l~ivGeSGsGKSTL~r~i~gl 61 (266)
T PRK10419 40 TVALLGRSGCGKSTLARLLVGL 61 (266)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999997799999999669
No 241
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.47 E-value=0.035 Score=34.10 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
.++|+|..||||||..+.+.
T Consensus 29 ~v~i~G~sGsGKSTLl~~l~ 48 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred EEEEECCCCCCHHHHHHHHC
T ss_conf 99999589998899999986
No 242
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.46 E-value=0.038 Score=33.93 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||+++.+.-
T Consensus 54 ~vaIIG~nGsGKSTL~~~l~G 74 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999994999849999999975
No 243
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=94.41 E-value=0.039 Score=33.82 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.|-|.|.+|+||||.++.+.-
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~ 22 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLAL 22 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899982798989999999999
No 244
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=94.41 E-value=0.021 Score=35.52 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEECCCCCCHH-HHHHHHHHCCCEEE
Q ss_conf 98888666789-99999997798699
Q gi|255764477|r 5 GLTGSIGTGKT-TVAEFLKKEKIPVI 29 (199)
Q Consensus 5 gitG~igSGKS-tv~~~l~~~G~~v~ 29 (199)
-|-|-.||||| |+|++.++.+=|.+
T Consensus 33 tLLGvTGsGKTFT~AnVIa~~~rPTL 58 (667)
T TIGR00631 33 TLLGVTGSGKTFTMANVIAQVQRPTL 58 (667)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEE
T ss_conf 78532148627889899998479849
No 245
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.39 E-value=0.037 Score=33.99 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~G 55 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999995999869999999966
No 246
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.04 Score=33.75 Aligned_cols=21 Identities=38% Similarity=0.756 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||.|-.||||||+++.+.-
T Consensus 35 ~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899984898988899999956
No 247
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.33 E-value=0.041 Score=33.68 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.++|+|..||||||+.+.+.-
T Consensus 26 ~~~i~GpSGsGKSTLL~~i~g 46 (206)
T TIGR03608 26 MVAIVGESGSGKSTLLNIIGL 46 (206)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999987999709999999975
No 248
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.32 E-value=0.038 Score=33.92 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 35 ~~aiiG~sGsGKSTL~~~l~G 55 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDG 55 (277)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999689999999963
No 249
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.30 E-value=0.039 Score=33.83 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||.|.-||||||+++.+.-
T Consensus 34 ~vaiiG~nGsGKSTLl~~l~G 54 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999479999999974
No 250
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.28 E-value=0.043 Score=33.56 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+.+.+..
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r 377 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLR 377 (567)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 788855888857899999986
No 251
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=94.27 E-value=0.033 Score=34.25 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9998888666789999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL 21 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l 21 (199)
-++|.|..||||||+.+.+
T Consensus 36 cv~L~G~SGaGKSTlLk~l 54 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSL 54 (224)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 5885368887678999976
No 252
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=94.25 E-value=0.037 Score=33.99 Aligned_cols=27 Identities=44% Similarity=0.484 Sum_probs=22.1
Q ss_pred EEECCCCCCHHHHHHHHHH-CCCEEEEH
Q ss_conf 9888866678999999997-79869990
Q gi|255764477|r 5 GLTGSIGTGKTTVAEFLKK-EKIPVISS 31 (199)
Q Consensus 5 gitG~igSGKStv~~~l~~-~G~~v~~a 31 (199)
=+.|.+|+|||++++.+++ .|++++..
T Consensus 2 Ll~GppGtGKT~~a~~la~~~~~~~~~v 29 (131)
T pfam00004 2 LLYGPPGTGKTTLAKAVAKELGAPFIEI 29 (131)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEC
T ss_conf 8789999999999999999978985332
No 253
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=94.24 E-value=0.04 Score=33.76 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5999888866678999999997
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~ 23 (199)
.++||.|..|||||..|.-+-.
T Consensus 13 ~~~aLvG~SGSGKS~tc~A~Lg 34 (239)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILG 34 (239)
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 3788874878758999999850
No 254
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.18 E-value=0.038 Score=33.89 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
++||+|.-||||||.++++.
T Consensus 29 ~vgLVG~NGsGKSTLlklL~ 48 (638)
T PRK10636 29 KVGLVGKNGCGKSTLLALLK 48 (638)
T ss_pred EEEEECCCCCHHHHHHHHHC
T ss_conf 99998899988999999980
No 255
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.17 E-value=0.044 Score=33.50 Aligned_cols=21 Identities=43% Similarity=0.711 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 27 iv~liGpNGaGKSTLlk~l~G 47 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAG 47 (246)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999997999769999999977
No 256
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.045 Score=33.45 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 33 ~~aiiG~NGsGKSTLl~~l~G 53 (273)
T PRK13647 33 KTAILGPNGAGKSTLLLHLNG 53 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999759999999966
No 257
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.16 E-value=0.048 Score=33.24 Aligned_cols=21 Identities=57% Similarity=0.790 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 28 i~~iiG~nGaGKSTLl~~i~G 48 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999988999989999999956
No 258
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=94.16 E-value=0.04 Score=33.74 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CC-CEEEEHHHHHHHHHH--HHHHHHHHHHHHHCCCCC
Q ss_conf 999888866678999999997-----79-869990499999850--000113566531000122
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EK-IPVISSDDIVDKLYH--YEAVDIIKKTFPRSIQNN 58 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G-~~v~~aD~i~~~l~~--~~~~~~i~~~fg~~i~~~ 58 (199)
||-+||..||||||.....-- -| ..|+.. +|.+ ......+....|=.|...
T Consensus 33 iViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~-----~L~ga~~~~l~~~RR~iGyIFQ~H 91 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQ-----ELKGASKKELVQVRRNIGYIFQAH 91 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC-----HHCCCCHHHHHHHHHHCCCEECCC
T ss_conf 79843788984688999887625655560478220-----102678889999987639144120
No 259
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.15 E-value=0.045 Score=33.46 Aligned_cols=20 Identities=20% Similarity=0.630 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
++||+|.-||||||+.+.+.
T Consensus 24 itaIvGpsGsGKSTLl~~i~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 28999999998899999999
No 260
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.15 E-value=0.043 Score=33.57 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||+.+.+.-
T Consensus 40 iv~LiG~nGaGKSTLlr~i~G 60 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999998998889999999965
No 261
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.046 Score=33.35 Aligned_cols=21 Identities=38% Similarity=0.658 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||+++.+.-
T Consensus 33 ~~~lvG~nGsGKSTL~~~l~G 53 (513)
T PRK13549 33 IVSLCGENGAGKSTLMKVLSG 53 (513)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999989999729999999956
No 262
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.13 E-value=0.05 Score=33.15 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
.++|+|..||||||..+.+.-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899999899999999646
No 263
>pfam00931 NB-ARC NB-ARC domain.
Probab=94.12 E-value=0.045 Score=33.41 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 599988886667899999999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~ 22 (199)
.+|||.|..|.||||+|+.+-
T Consensus 20 ~vI~I~G~gGiGKTtLA~~v~ 40 (285)
T pfam00931 20 GVVGIVGMGGVGKTTLAKQIY 40 (285)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 399988999563999999997
No 264
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.049 Score=33.18 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 35 ~v~IiG~nGsGKSTL~k~l~G 55 (304)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNA 55 (304)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999987999859999999966
No 265
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.09 E-value=0.045 Score=33.42 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||.++.+.-
T Consensus 31 ~~~LvG~NGaGKSTL~k~l~G 51 (490)
T PRK10938 31 SWAFVGSNGSGKSALARALAG 51 (490)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999997999779999999956
No 266
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.046 Score=33.36 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|..||||||+.+.+.-
T Consensus 30 ~~~iiGpSGsGKSTll~~i~G 50 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999779999999976
No 267
>KOG0057 consensus
Probab=94.09 E-value=0.047 Score=33.31 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CCCEEEEH
Q ss_conf 999888866678999999997----79869990
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EKIPVISS 31 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G~~v~~a 31 (199)
.+||.|+.||||||+.+.|=. .|=-.+|-
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG 412 (591)
T KOG0057 380 KVAIVGSNGSGKSTILRLLLRFFDYSGSILIDG 412 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEECC
T ss_conf 898978999878899999999744688599987
No 268
>CHL00181 cbbX CbbX; Provisional
Probab=94.08 E-value=0.049 Score=33.21 Aligned_cols=21 Identities=52% Similarity=0.602 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
-..++|.||.||||||+++.+
T Consensus 61 h~vF~GnPGTGKTTVARl~a~ 81 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 388878998679999999999
No 269
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=94.08 E-value=0.041 Score=33.70 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHH-----HCCCEEEEHHHH
Q ss_conf 99988886667899999999-----779869990499
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK-----KEKIPVISSDDI 34 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~-----~~G~~v~~aD~i 34 (199)
.+||.|..||||||.++.+- ..|-.-+|.=++
T Consensus 358 ~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl 394 (556)
T TIGR01842 358 ALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADL 394 (556)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHH
T ss_conf 5888747865258898788721013565336403344
No 270
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.07 E-value=0.049 Score=33.21 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 34 i~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 34 IHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999999999999999999727
No 271
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.07 E-value=0.051 Score=33.09 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCE
Q ss_conf 95999888866678999999997-7986
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIP 27 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~ 27 (199)
+|++=||||..||||..|.-+.. .+-+
T Consensus 1 gmi~LVtGG~rSGKS~~AE~la~~~~~~ 28 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 9899997987634899999999856998
No 272
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.044 Score=33.50 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+|||+|.-||||||+.+.+.-
T Consensus 340 riaIvG~NGsGKSTLlk~L~G 360 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 799974787138899999728
No 273
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.04 E-value=0.045 Score=33.44 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+|||+|.-||||||+++.+.-
T Consensus 347 ~ialvG~NGsGKSTLlk~l~G 367 (632)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLG 367 (632)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799988988427799998606
No 274
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.02 E-value=0.053 Score=33.00 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|..||||||+.+.+.-+
T Consensus 28 ~~~iiG~SGsGKSTll~~i~gL 49 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999998199999999744
No 275
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.045 Score=33.43 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|..||||||..+.+.-+
T Consensus 33 ~~~ivG~SGsGKSTllr~i~gL 54 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999889805899999999679
No 276
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.99 E-value=0.048 Score=33.26 Aligned_cols=21 Identities=33% Similarity=0.718 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+|||+|.-||||||+++.+.-
T Consensus 352 ~iaivG~NGsGKSTLlk~l~G 372 (556)
T PRK11819 352 IVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 478988987758899999838
No 277
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.99 E-value=0.049 Score=33.19 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 39 ~~aIiG~nGsGKSTL~~~l~G 59 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999579999999965
No 278
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.98 E-value=0.052 Score=33.02 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=26.6
Q ss_pred CHHHHHHHCCEEEE-------CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 97899986898998-------79998999999999999999987
Q gi|255764477|r 159 NEKDKISRADYVIN-------TEGTIEAIEKETQKMLKYILKIN 195 (199)
Q Consensus 159 ~~~~k~~~aD~vI~-------N~~s~~~l~~~i~~~~~~i~~l~ 195 (199)
..++-...||.++. =.|+++++..+-+..++.+..+.
T Consensus 202 ~l~~v~~lcDri~vl~~GkIi~~G~~~evl~ky~~~~~~~~~~~ 245 (264)
T PRK13546 202 NLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKS 245 (264)
T ss_pred CHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 78999986999999989889998599999999999999998618
No 279
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=93.98 E-value=0.049 Score=33.21 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=26.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHC-CCEEEEHHHHHHHH
Q ss_conf 959998888666789999999977-98699904999998
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKL 38 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~-G~~v~~aD~i~~~l 38 (199)
|++++|+|+-.|||||.++-|++. +-+ ++-..+++.
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~--~~wEY~Re~ 44 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT--SAWEYGREY 44 (187)
T ss_pred HEEEEEECCCCCCHHHHHHHHHHHHCCC--CHHHHHHHH
T ss_conf 5135564576657179999999996887--312778999
No 280
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.041 Score=33.66 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|-.||||||+++.+.-
T Consensus 43 ~lgiVGeSGsGKSTL~~~l~g 63 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred EEEEECCCCHHHHHHHHHHHC
T ss_conf 999999983199999999956
No 281
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.97 E-value=0.05 Score=33.17 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=36.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCEEEEHHHHH---HHHHHHH-HHH-HHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9998888666789999999977-----98699904999---9985000-011-3566531000122211100011110
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE-----KIPVISSDDIV---DKLYHYE-AVD-IIKKTFPRSIQNNKVNKARLLGILQ 70 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~-----G~~v~~aD~i~---~~l~~~~-~~~-~i~~~fg~~i~~~~i~r~~l~~~vf 70 (199)
-|+|||..||||||..+.+..+ |--.|.--.+. -+.|... .|. .--..||+.+.|+-+---.+++.-+
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~ 108 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRP 108 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHCCCC
T ss_conf 488767887668899999981369988528874733443485999999999972842146633223114257753688
No 282
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.96 E-value=0.051 Score=33.08 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 32 ~~~iiG~sGsGKTTll~~i~G 52 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999869999999966
No 283
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.94 E-value=0.057 Score=32.78 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||..+.+.-
T Consensus 28 ~~~l~G~NGsGKSTLlk~i~G 48 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999999999999966
No 284
>PRK11519 tyrosine kinase; Provisional
Probab=93.94 E-value=0.29 Score=28.37 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=61.6
Q ss_pred EEEEEECC-CCCCHHHHHHHHHH----CC--CEEEEHHHHH---HHHHHHHHHHHHHHHH-H-----HCCCCCCC-CCCC
Q ss_conf 59998888-66678999999997----79--8699904999---9985000011356653-1-----00012221-1100
Q gi|255764477|r 2 LIIGLTGS-IGTGKTTVAEFLKK----EK--IPVISSDDIV---DKLYHYEAVDIIKKTF-P-----RSIQNNKV-NKAR 64 (199)
Q Consensus 2 ~iIgitG~-igSGKStv~~~l~~----~G--~~v~~aD~i~---~~l~~~~~~~~i~~~f-g-----~~i~~~~i-~r~~ 64 (199)
.+|++|+. +|-||||+|--|+. .| .-++|||--- |+..+.+...-+.+.. | +.+....+ +=..
T Consensus 527 ~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~l~v 606 (720)
T PRK11519 527 NVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIANFDL 606 (720)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHCCCCCCCCEEE
T ss_conf 67999708999978999999999998379919999387777016775399999985998079997899703579899899
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CC---CCCCCEEEEEEECCC
Q ss_conf 0-11110012467888753489999999976677420247633345643255-58---756422789995211
Q gi|255764477|r 65 L-LGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFE-KR---KEYLFDAVVVVTCSF 132 (199)
Q Consensus 65 l-~~~vf~~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E-~~---~~~~~d~vi~V~a~~ 132 (199)
| +..+--||..+ |. -..+..++...+. .+++||+|.|-+.- +. +-.++|.+++|.-.-
T Consensus 607 l~~G~~~pnp~el--L~-------s~~~~~ll~~l~~-~yD~IIiDtpPv~~v~Da~~la~~aD~~l~Vvr~g 669 (720)
T PRK11519 607 IPRGQVPPNPSEL--LM-------SERFAELVAWASK-NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYA 669 (720)
T ss_pred ECCCCCCCCHHHH--HC-------CHHHHHHHHHHHH-HCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECC
T ss_conf 7699999498998--38-------7599999999985-29999993999652358999999789799999899
No 285
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.94 E-value=0.047 Score=33.32 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 35 ~~~iiG~nGsGKSTLl~~l~G 55 (286)
T PRK13641 35 FVALIGHTGSGKSTLMQHFNA 55 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998399999999965
No 286
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.93 E-value=0.054 Score=32.93 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
-|-|+||.||||||+.+.|-..
T Consensus 164 NIlIsGgTGSGKTTllnALl~~ 185 (343)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISA 185 (343)
T ss_pred CEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999888986199999999962
No 287
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=93.91 E-value=0.055 Score=32.88 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 959998888666789999999977
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~ 24 (199)
|+.|+|.|.+.+||||..+.|...
T Consensus 1 MkkVaivGrpNvGKSTLlN~L~g~ 24 (143)
T pfam10662 1 MKKIMLIGRSGCGKTTLTQALNGE 24 (143)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 975999899999999999997599
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.90 E-value=0.057 Score=32.79 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|.-||||||..+.+.-+
T Consensus 29 i~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999998377
No 289
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=93.90 E-value=0.054 Score=32.93 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||+|--||||||.++.+.-+
T Consensus 28 i~~LvG~sGsGKSTL~~~l~Gl 49 (520)
T TIGR03269 28 VLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999996999999999651
No 290
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=93.89 E-value=0.047 Score=33.34 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEH
Q ss_conf 999888866678999999997-----79869990
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISS 31 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~a 31 (199)
.|+|+|-.||||||.+..|.= .|=.++|-
T Consensus 389 r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~vtl~G 422 (566)
T TIGR02868 389 RVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDG 422 (566)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECC
T ss_conf 0898668876578999999840289999178777
No 291
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=93.89 E-value=0.049 Score=33.21 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEE
Q ss_conf 999888866678999999997-----798699
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVI 29 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~ 29 (199)
+++|+|-.||||||..+.|-= -|--.+
T Consensus 380 ~vAl~G~SGaGKSTLL~lLLGf~~P~~G~i~v 411 (570)
T TIGR02857 380 RVALVGPSGAGKSTLLNLLLGFVEPTEGAIVV 411 (570)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 48886279997889999997157644646887
No 292
>PRK10744 phosphate transporter subunit; Provisional
Probab=93.88 E-value=0.059 Score=32.72 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|.-||||||+.+.+.-+
T Consensus 38 ~~~liG~nGaGKSTLlk~i~gl 59 (257)
T PRK10744 38 VTAFIGPSGCGKSTLLRTFNKM 59 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999998199999999876
No 293
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.86 E-value=0.058 Score=32.74 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 29 ~~~liG~nGsGKSTll~~i~G 49 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999809999999963
No 294
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.84 E-value=0.055 Score=32.89 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||+.+.+.-
T Consensus 36 i~~iiGpnGsGKSTLlk~i~G 56 (269)
T PRK11831 36 ITAIMGPSGIGKTTLLRLIGG 56 (269)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999993999759999999967
No 295
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.83 E-value=0.062 Score=32.57 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
.++|+|..||||||..+.+.-+
T Consensus 29 ~v~i~GpSGsGKSTLl~~i~gl 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999979995399999999629
No 296
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=93.81 E-value=0.042 Score=33.65 Aligned_cols=18 Identities=50% Similarity=0.525 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 998888666789999999
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFL 21 (199)
Q Consensus 4 IgitG~igSGKStv~~~l 21 (199)
.-||||||.||||....|
T Consensus 245 ~li~GGPGTGKTTTv~~L 262 (753)
T TIGR01447 245 SLITGGPGTGKTTTVARL 262 (753)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 899879889778999999
No 297
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.81 E-value=0.056 Score=32.84 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 32 ~~~iiGpsGsGKSTLl~~i~G 52 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999579999999975
No 298
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.81 E-value=0.088 Score=31.60 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHH-CCC--EEEEH
Q ss_conf 99888866678999999997-798--69990
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EKI--PVISS 31 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G~--~v~~a 31 (199)
+-+.|.+|+||||+|+++++ .+. .-+||
T Consensus 40 ~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA 70 (417)
T PRK13342 40 MILWGPPGTGKTTLARIIAGATDAEFEALSA 70 (417)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9988969998999999999986898899614
No 299
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.80 E-value=0.06 Score=32.63 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||.|-.||||||++++++-
T Consensus 55 ~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 998987899858999999958
No 300
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.79 E-value=0.061 Score=32.62 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|--||||||..+.+.-
T Consensus 28 i~gLiGpNGaGKSTLlk~i~G 48 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999709999999967
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=93.79 E-value=0.053 Score=33.00 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+++.+.-
T Consensus 312 i~gi~G~nGsGKsTL~k~l~G 332 (520)
T TIGR03269 312 IFGIVGTSGAGKTTLSKIIAG 332 (520)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899987888878999999948
No 302
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.78 E-value=0.061 Score=32.61 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 27 ~v~iiG~nGaGKSTLl~~i~G 47 (233)
T PRK10771 27 QVAILGPSGAGKSTLLNLIAG 47 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999819999999965
No 303
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.77 E-value=0.056 Score=32.83 Aligned_cols=35 Identities=49% Similarity=0.635 Sum_probs=24.8
Q ss_pred CEEEEEECCCCCCHHHHHHH----HH-HCCCEEEEHHHHH
Q ss_conf 95999888866678999999----99-7798699904999
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEF----LK-KEKIPVISSDDIV 35 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~----l~-~~G~~v~~aD~i~ 35 (199)
|+.||+-|.+|||||++... |+ ++...|+--|-..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECEEEC
T ss_conf 4899961799867899999999999752776899640400
No 304
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=93.77 E-value=0.048 Score=33.28 Aligned_cols=28 Identities=32% Similarity=0.441 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHH----HHCCCEEEE
Q ss_conf 9998888666789999999----977986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL----KKEKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l----~~~G~~v~~ 30 (199)
|++|+|--+|||||+..-+ +++||+|-=
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~ 32 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVAT 32 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 93789625886789999999999707995089
No 305
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.77 E-value=0.082 Score=31.82 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=26.6
Q ss_pred CEEEEEECCCCCCHHHHHHHH----HHCC--CEEEEHHH
Q ss_conf 959998888666789999999----9779--86999049
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFL----KKEK--IPVISSDD 33 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l----~~~G--~~v~~aD~ 33 (199)
|.+|+|+|.=|-||||++--| +++| .-++|||-
T Consensus 1 ~r~Iai~GKGGVGKTTtavNLA~aLa~~GkkVlliDaDp 39 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 958999799857789999999999998799499986579
No 306
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.058 Score=32.73 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|..||||||+.+.+.-
T Consensus 29 ~~~ilGpSG~GKSTllr~i~g 49 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999569999999975
No 307
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=93.76 E-value=0.036 Score=34.02 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHH--HHHHH---CCCEEEEHHHHHHHHH
Q ss_conf 59998888666789999--99997---7986999049999985
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVA--EFLKK---EKIPVISSDDIVDKLY 39 (199)
Q Consensus 2 ~iIgitG~igSGKStv~--~~l~~---~G~~v~~aD~i~~~l~ 39 (199)
..|.|||-.||||||.| .+++| +-..-+| ..||+.+
T Consensus 23 ~lVViTG~SGSGKSSLAFDTiYAEGQRRYvESLS--aYARQFL 63 (956)
T TIGR00630 23 KLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS--AYARQFL 63 (956)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHH--HHHHHHC
T ss_conf 6699974568861545654676614500210015--8999864
No 308
>pfam08303 tRNA_lig_kinase tRNA ligase kinase domain. This domain is found in fungal tRNA ligases and has kinase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.
Probab=93.73 E-value=0.026 Score=34.90 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=25.8
Q ss_pred ECCCCCCHHHHHHHHHHC-C-CEEEEHHHHHH
Q ss_conf 888666789999999977-9-86999049999
Q gi|255764477|r 7 TGSIGTGKTTVAEFLKKE-K-IPVISSDDIVD 36 (199)
Q Consensus 7 tG~igSGKStv~~~l~~~-G-~~v~~aD~i~~ 36 (199)
.-.|||||||++..|.++ | |..+-.|++..
T Consensus 5 IAtIGCGKTTv~~aL~~LFg~WgHvQNDnI~~ 36 (169)
T pfam08303 5 IATIGCGKTTVSLTLNNLFPEWGHVQNDNITG 36 (169)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 12688559999999999778877641787767
No 309
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.71 E-value=0.062 Score=32.56 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|..||||||..+.+.-
T Consensus 28 ~~~ivGpSGsGKSTLL~~i~g 48 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998449999999981
No 310
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=93.69 E-value=0.066 Score=32.40 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||+.+.+.-
T Consensus 34 i~~iiG~nGaGKSTLl~~i~G 54 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999988899889999999856
No 311
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.69 E-value=0.061 Score=32.59 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||+++.+.-
T Consensus 288 ~~~i~G~nGsGKSTLl~~l~G 308 (490)
T PRK10938 288 HWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899986788879999999808
No 312
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.06 Score=32.66 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 32 ~~aliG~NGaGKSTLl~~i~G 52 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFKHFNG 52 (277)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999479999999966
No 313
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.69 E-value=0.065 Score=32.43 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
-|.|+|+.||||||+.+.|...
T Consensus 162 NilI~G~TgSGKTTll~aL~~~ 183 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred CEEEECCCCCCHHHHHHHHHHC
T ss_conf 1999888898899999999835
No 314
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.059 Score=32.69 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+++.+.-
T Consensus 290 i~gi~G~nGsGKsTLl~~L~G 310 (513)
T PRK13549 290 ILGIAGLVGAGRTELVQCLFG 310 (513)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899747988658999999838
No 315
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.68 E-value=0.059 Score=32.71 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
+++|.|..||||||+.+.+.-+
T Consensus 52 ~~~ivG~SGsGKSTLLr~i~GL 73 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999989984899999999759
No 316
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.67 E-value=0.062 Score=32.55 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 39 ~~~liG~NGaGKSTLl~~l~g 59 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999809999999956
No 317
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.66 E-value=0.064 Score=32.49 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++|++|.-||||||..+.+.-
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G 48 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999849999999848
No 318
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.65 E-value=0.066 Score=32.39 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|..||||||..+.+.-
T Consensus 35 ~~~ilGpnGsGKSTLl~~i~G 55 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999998999609999999967
No 319
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=93.65 E-value=0.11 Score=31.03 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCE
Q ss_conf 5999888866678999999997-7986
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIP 27 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~ 27 (199)
.||-+.|..||||||..+=|.+ +|..
T Consensus 29 ~v~~L~GDlGaGKTtl~~G~~~~LG~~ 55 (147)
T TIGR00150 29 TVVLLKGDLGAGKTTLVKGLLQGLGIT 55 (147)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCE
T ss_conf 389973234666589999999837922
No 320
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.64 E-value=0.064 Score=32.48 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|-.||||||+.+.+.-
T Consensus 25 ~~~iiGpSGsGKSTll~~i~G 45 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999997359999999984
No 321
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=93.64 E-value=0.11 Score=31.00 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CCCEEE
Q ss_conf 999888866678999999997----798699
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EKIPVI 29 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G~~v~ 29 (199)
++.++|.-+|||||+++.|.+ +|+.+.
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~~~~g~~~~ 32 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYLKRRGYRVA 32 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 7999948999899999999999998799448
No 322
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.62 E-value=0.059 Score=32.71 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|-.||||||.++.+.-
T Consensus 44 ilgivGeSGsGKSTl~~~i~g 64 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMG 64 (330)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999986898779999999976
No 323
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.068 Score=32.32 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 29 ~~~iiGpsGsGKSTLl~~i~g 49 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998339999999974
No 324
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.57 E-value=0.1 Score=31.14 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=23.2
Q ss_pred EEEECCCCCCHHHHHHHHHH---CCCEEEEH
Q ss_conf 99888866678999999997---79869990
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK---EKIPVISS 31 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~---~G~~v~~a 31 (199)
+-+.|.+||||||+++++++ ..|..+||
T Consensus 55 ~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsA 85 (726)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (726)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 7888979999999999998874886799856
No 325
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=0.071 Score=32.21 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEE
Q ss_conf 999888866678999999997-----7986999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVIS 30 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~ 30 (199)
++||.|.-||||||.++.+.- .|-..|+
T Consensus 34 ~~aiiG~NGaGKSTLl~~i~Gll~p~~G~I~~~ 66 (285)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPSSGRILFD 66 (285)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 999999999809999999965988886089999
No 326
>PRK09087 hypothetical protein; Validated
Probab=93.54 E-value=0.1 Score=31.15 Aligned_cols=35 Identities=23% Similarity=0.540 Sum_probs=27.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEEHHHHHHH
Q ss_conf 9998888666789999999977-9869990499999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDK 37 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~-G~~v~~aD~i~~~ 37 (199)
.+-++|..|||||..++.+.+. |+..+++..+..+
T Consensus 46 ~~~L~Gp~gsGKTHL~~~~~~~~~a~~~~~~~~~~~ 81 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKADALLVHPNEIGSD 81 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECHHHCCHH
T ss_conf 589989999988699999999809968366874746
No 327
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.071 Score=32.18 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|..||||||..+.+.-
T Consensus 28 ~~~iiG~SGsGKSTll~~i~g 48 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999729999999975
No 328
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.50 E-value=0.069 Score=32.26 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||.++.+.-
T Consensus 33 i~~liG~nGaGKSTL~~~l~G 53 (510)
T PRK09700 33 IHALLGENGAGKSTLMKVLSG 53 (510)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999989999729999999837
No 329
>KOG3062 consensus
Probab=93.49 E-value=0.065 Score=32.42 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 95999888866678999999997
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~ 23 (199)
|=.|.+||-++|||||.|.-|.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~ 23 (281)
T KOG3062 1 MPLVVICGLPCSGKSTRAVELRE 23 (281)
T ss_pred CCEEEEECCCCCCCHHHHHHHHH
T ss_conf 97699937888882067999999
No 330
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.49 E-value=0.076 Score=32.00 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||..+.+.-
T Consensus 29 i~~iiG~nGaGKSTLlk~i~G 49 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999988999989999999964
No 331
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.48 E-value=0.07 Score=32.25 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|.-||||||..+.+.-
T Consensus 29 ~~~lvGpnGaGKSTLl~~i~G 49 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998469999999975
No 332
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.47 E-value=0.074 Score=32.08 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|..||||||+.+.+.-
T Consensus 28 ~~~ivGpSG~GKSTllr~i~G 48 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999839999999985
No 333
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.46 E-value=0.073 Score=32.11 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||.++.+.-
T Consensus 32 i~~liG~nGaGKSTL~~~l~G 52 (501)
T PRK10762 32 VMALVGENGAGKSTLMKVLTG 52 (501)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999989999829999999957
No 334
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.45 E-value=0.076 Score=32.01 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||+.+.+.-
T Consensus 30 ~~~iiG~nGaGKSTLl~~l~g 50 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999719999999965
No 335
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.42 E-value=0.08 Score=31.89 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||..+.+.-
T Consensus 29 ~~~l~G~NGaGKSTLl~~l~G 49 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999859999999976
No 336
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=93.41 E-value=0.068 Score=32.32 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.|-|+|+.||||||..+.+-.
T Consensus 141 ~ilIsG~TGSGKTT~l~all~ 161 (283)
T pfam00437 141 NILVSGGTGSGKTTLLYALLN 161 (283)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 599988999988999999998
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.40 E-value=0.081 Score=31.84 Aligned_cols=21 Identities=48% Similarity=0.786 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 27 iv~ilGpNGaGKSTllk~i~G 47 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999999999999968
No 338
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=93.40 E-value=0.52 Score=26.75 Aligned_cols=31 Identities=39% Similarity=0.523 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHH----HHCC--CEEEEHHH
Q ss_conf 9998888666789999999----9779--86999049
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL----KKEK--IPVISSDD 33 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l----~~~G--~~v~~aD~ 33 (199)
++-+||.=|.||||+|--+ ++.| .-++|.|-
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DP 37 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDP 37 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9899789966199999999999996899499995898
No 339
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=93.40 E-value=0.07 Score=32.25 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-----CCCEEE
Q ss_conf 5999888866678999999997-----798699
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-----EKIPVI 29 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-----~G~~v~ 29 (199)
..++|.|..||||||+...|.. .|--.+
T Consensus 412 ~t~AlVG~SGsGKSTii~LL~RfYdP~~G~I~i 444 (1467)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444 (1467)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 779986688875667999996326889986997
No 340
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.39 E-value=0.076 Score=32.02 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 30 ~vaiiG~nGsGKSTLl~~l~G 50 (275)
T PRK13639 30 MIAILGPNGAGKSTLFLHFNG 50 (275)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999649999999973
No 341
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.38 E-value=0.079 Score=31.92 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||.++.+.-
T Consensus 26 i~~liG~nGsGKSTL~~~l~G 46 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFG 46 (491)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999819999999956
No 342
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.37 E-value=0.08 Score=31.87 Aligned_cols=36 Identities=36% Similarity=0.579 Sum_probs=24.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-----CEEEEHHHHHHH
Q ss_conf 59998888666789999999977-9-----869990499999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE-K-----IPVISSDDIVDK 37 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~-G-----~~v~~aD~i~~~ 37 (199)
-.+.|.|.+||||||++..+... + +..++++.....
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~ 44 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH
T ss_conf 789999999702999999999872668996899875998988
No 343
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.36 E-value=0.1 Score=31.17 Aligned_cols=31 Identities=45% Similarity=0.669 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHH----HHCCCEE--EEHHH
Q ss_conf 9998888666789999999----9779869--99049
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL----KKEKIPV--ISSDD 33 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l----~~~G~~v--~~aD~ 33 (199)
.|+++|.=|+||||++..| ++.|.+| +|+|-
T Consensus 1 kia~~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9789889977499999999999997899699998989
No 344
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.35 E-value=0.079 Score=31.89 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 33 i~~iiG~sGsGKSTLl~~i~g 53 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999998999819999999965
No 345
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=93.33 E-value=0.042 Score=33.65 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHH-HHHHHHC
Q ss_conf 999888866678999-9999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTV-AEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv-~~~l~~~ 24 (199)
||=|||-.||||||- =.-|+++
T Consensus 247 IiLVTGPTGSGKtTTLYaaL~~L 269 (495)
T TIGR02533 247 IILVTGPTGSGKTTTLYAALSRL 269 (495)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 18841778985258899999863
No 346
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.32 E-value=0.085 Score=31.70 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||..+.+.-
T Consensus 39 ~~~l~GpNGaGKTTLlr~l~G 59 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999879999999976
No 347
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.071 Score=32.21 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||.++.+.-
T Consensus 32 ~~~lvG~nGaGKSTL~~~l~G 52 (501)
T PRK11288 32 VHALMGENGAGKSTLLKILSG 52 (501)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999819999999847
No 348
>PRK10908 cell division protein FtsE; Provisional
Probab=93.28 E-value=0.075 Score=32.03 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 30 ~~~liG~nGsGKSTLl~~i~G 50 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998079999999965
No 349
>KOG4181 consensus
Probab=93.27 E-value=0.13 Score=30.60 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 59998888666789999999977
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~ 24 (199)
.+||+.|+-||||||+.+.|+.-
T Consensus 189 ~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181 189 TVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69974047775488999998426
No 350
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.26 E-value=0.068 Score=32.32 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
-|-|+|+.||||||+.+.|..
T Consensus 146 nilVsGgTGSGKTTllnaL~~ 166 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 689991777756899999998
No 351
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=93.26 E-value=0.072 Score=32.15 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|.-||||||.++.+-..
T Consensus 31 ~~aiiG~SGsGKStl~k~llgl 52 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999987899999999579
No 352
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.23 E-value=0.085 Score=31.72 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|..||||||+.+.+.-
T Consensus 28 ~~~iiGpSGsGKSTllr~i~G 48 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999839999999977
No 353
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=93.20 E-value=0.21 Score=29.26 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHH----HHCC--CEEEEHH
Q ss_conf 9998888666789999999----9779--8699904
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL----KKEK--IPVISSD 32 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l----~~~G--~~v~~aD 32 (199)
+|+|+|.=|-||||++--| +++| .-++|+|
T Consensus 2 ~iai~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD 37 (269)
T pfam00142 2 KIAIYGKGGIGKSTTSQNTSAALAEMGKKVLIVGCD 37 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 589989997688999999999999879909998458
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.09 Score=31.56 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||..+.+.-
T Consensus 27 ~~~i~G~nGaGKSTLl~~l~g 47 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999987889998999999958
No 355
>PRK10646 putative ATPase; Provisional
Probab=93.16 E-value=0.099 Score=31.28 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Q ss_conf 999888866678999999997-798
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKI 26 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~ 26 (199)
+|.+.|..||||||+++.+.+ +|.
T Consensus 30 vi~L~G~LGaGKTtf~r~i~~~lg~ 54 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999888878999999999998499
No 356
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.15 E-value=0.083 Score=31.78 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|--||||||.++.+..+
T Consensus 44 ~vaLvGeSGSGKSTl~~~l~gl 65 (623)
T PRK10261 44 TLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999989997899999999779
No 357
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.15 E-value=0.089 Score=31.57 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 50 ivgilG~NGaGKSTLl~~i~G 70 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999997999819999999975
No 358
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.14 E-value=0.085 Score=31.71 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|..||||||+.+.+.-
T Consensus 27 ~~~iiGpSGsGKSTLlr~i~G 47 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999996359999999974
No 359
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=93.14 E-value=0.089 Score=31.58 Aligned_cols=20 Identities=30% Similarity=0.753 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
++||+|..||||||+++.+.
T Consensus 281 ivgivG~nGsGKSTL~k~L~ 300 (501)
T PRK11288 281 IVGFFGLVGAGRSELMKLLY 300 (501)
T ss_pred EEEEECCCCCCHHHHHHHHC
T ss_conf 99975688864879999843
No 360
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.11 E-value=0.047 Score=33.34 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 59998888666789999999977
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~ 24 (199)
.+-++.|..||||||+.+-|..+
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 06998889886788899998754
No 361
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.093 Score=31.45 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|.-||||||..+.+.-.
T Consensus 35 i~~llG~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999989999889999998378
No 362
>KOG1532 consensus
Probab=93.08 E-value=0.13 Score=30.59 Aligned_cols=38 Identities=34% Similarity=0.389 Sum_probs=31.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-----C-CCEEEEHHHHHHHHH
Q ss_conf 5999888866678999999997-----7-986999049999985
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-----E-KIPVISSDDIVDKLY 39 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-----~-G~~v~~aD~i~~~l~ 39 (199)
.+|-+.|+.||||||++.-|.. . .-.|+|.|-.++++-
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vp 63 (366)
T KOG1532 20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVP 63 (366)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCC
T ss_conf 07999944778841399999999862369980886788885488
No 363
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=93.07 E-value=0.14 Score=30.39 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHHHH
Q ss_conf 999888866678999999997-----7986999049999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDIVD 36 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~aD~i~~ 36 (199)
++.+-|-.||||||..+++.- .|--.||-+.|..
T Consensus 21 i~vi~GlSGsGKsT~vrmlNRLIEPt~G~i~IDG~~I~~ 59 (372)
T TIGR01186 21 IFVIMGLSGSGKSTLVRMLNRLIEPTAGQIFIDGENIMK 59 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCHHHHC
T ss_conf 899977899857899999872257778746766214313
No 364
>KOG0054 consensus
Probab=93.07 E-value=0.091 Score=31.52 Aligned_cols=20 Identities=20% Similarity=0.649 Sum_probs=14.0
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 59998888666789999999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFL 21 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l 21 (199)
+.+||.|..|||||+....+
T Consensus 548 ~lvaVvG~vGsGKSSLL~Ai 567 (1381)
T KOG0054 548 QLVAVVGPVGSGKSSLLSAI 567 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 88999899988889999999
No 365
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.05 E-value=0.63 Score=26.26 Aligned_cols=130 Identities=25% Similarity=0.222 Sum_probs=69.7
Q ss_pred EEEEE-CCCCCCHHHHHHHHH----HCC--CEEEEHHHHHHH---HHHHHH---HHH-HHHH-HHHCCCCCCCCCCCHHH
Q ss_conf 99988-886667899999999----779--869990499999---850000---113-5665-31000122211100011
Q gi|255764477|r 3 IIGLT-GSIGTGKTTVAEFLK----KEK--IPVISSDDIVDK---LYHYEA---VDI-IKKT-FPRSIQNNKVNKARLLG 67 (199)
Q Consensus 3 iIgit-G~igSGKStv~~~l~----~~G--~~v~~aD~i~~~---l~~~~~---~~~-i~~~-fg~~i~~~~i~r~~l~~ 67 (199)
+|++| |..|-||||++-.|+ ..| .-++|||-.... .++.+. ... +... +...+..+. .+.+ .
T Consensus 59 ~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~--~~~l-s 135 (265)
T COG0489 59 VIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDG--IKVL-S 135 (265)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCC--CCEE-E
T ss_conf 899975899875689999999999963993899967466986355408986556541137871143220266--5504-7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 1100124678887534899999999766774202476333456432555----87564227899952111356888
Q gi|255764477|r 68 ILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK----RKEYLFDAVVVVTCSFETQRERV 139 (199)
Q Consensus 68 ~vf~~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~----~~~~~~d~vi~V~a~~~~r~~Rl 139 (199)
+.|.-+..-.+-+ |+.-..+..++.+......+++++|.|-..-. -.....|.+++|..|.++...=+
T Consensus 136 i~~~~~~p~~~r~----~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~~~g~viVt~p~~~~~~~v 207 (265)
T COG0489 136 ILPLGPVPVIPRG----LLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIPDGVVIVTTPGKTALEDV 207 (265)
T ss_pred EEECCCCCCCCHH----HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 8832889989467----76338999999997456888899969998642777887513885999966773559999
No 366
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.05 E-value=0.15 Score=30.09 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-C---CCEEE--EHHHHHHHH
Q ss_conf 999888866678999999997-7---98699--904999998
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-E---KIPVI--SSDDIVDKL 38 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~---G~~v~--~aD~i~~~l 38 (199)
-+-++|-+|+|||++++.+.+ . +++++ ++.......
T Consensus 21 ~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~ 62 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL 62 (151)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHH
T ss_conf 089989999886599999999712137982785477704677
No 367
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.04 E-value=0.082 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|-.||||||.++.+--+
T Consensus 35 ilgivGeSGsGKSTl~~~ilgl 56 (327)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGL 56 (327)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999987899999999748
No 368
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.03 E-value=0.09 Score=31.55 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|-.||||||+.+.+.-
T Consensus 56 i~~ivG~SGsGKSTLlr~i~g 76 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998469999999975
No 369
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.00 E-value=0.099 Score=31.30 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|--||||||..+.+.-
T Consensus 28 i~~i~G~NGsGKSTLlk~i~G 48 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999819999999967
No 370
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.00 E-value=0.093 Score=31.45 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|..||||||..+.+.-
T Consensus 26 ~~~ilGpSGsGKSTLl~li~G 46 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999559999999976
No 371
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=92.99 E-value=0.11 Score=31.08 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=30.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHH
Q ss_conf 999888866678999999997-79869990499999850
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYH 40 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~ 40 (199)
+|-|.|..|||||-+|=-|++ +.+.|+++|.+ ++|+
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~--qiYK 37 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSM--QIYK 37 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCH--HHHC
T ss_conf 967740885547789999887689578743502--3223
No 372
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.98 E-value=0.095 Score=31.41 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|..||||||..+.+.-
T Consensus 37 i~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999998999519999999857
No 373
>KOG1534 consensus
Probab=92.97 E-value=0.11 Score=31.11 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=27.3
Q ss_pred CEEE--EEECCCCCCHHHHHHHHHH------CCCEEEEHHHHHH
Q ss_conf 9599--9888866678999999997------7986999049999
Q gi|255764477|r 1 MLII--GLTGSIGTGKTTVAEFLKK------EKIPVISSDDIVD 36 (199)
Q Consensus 1 M~iI--gitG~igSGKStv~~~l~~------~G~~v~~aD~i~~ 36 (199)
|+.. -+.|..||||||.|..+-+ +.+.++|.|-.+.
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae 44 (273)
T KOG1534 1 MMRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAE 44 (273)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHH
T ss_conf 97315898746788843078999999986285458862687888
No 374
>PRK13544 consensus
Probab=92.97 E-value=0.1 Score=31.19 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||+.+.+.-
T Consensus 29 i~~l~G~NGsGKSTLl~~i~G 49 (208)
T PRK13544 29 LTLVIGNNGSGKTSLLRLLAG 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999989999999958
No 375
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=92.96 E-value=0.095 Score=31.41 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
+++|.|-.||||||..+.+.-+
T Consensus 52 i~~lvGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999973499999999759
No 376
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=0.039 Score=33.82 Aligned_cols=30 Identities=43% Similarity=0.651 Sum_probs=25.4
Q ss_pred EECCCCCCHHHHHHHHHHC-CCEEEEHHHHH
Q ss_conf 8888666789999999977-98699904999
Q gi|255764477|r 6 LTGSIGTGKTTVAEFLKKE-KIPVISSDDIV 35 (199)
Q Consensus 6 itG~igSGKStv~~~l~~~-G~~v~~aD~i~ 35 (199)
-...|||||||+|+.|.++ |+|++--|++.
T Consensus 379 pia~igcgktt~ak~l~~lf~w~~vqnd~ls 409 (758)
T COG5324 379 PIATIGCGKTTVAKILEKLFGWPVVQNDNLS 409 (758)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 7777514731299999997088611268777
No 377
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=92.95 E-value=0.095 Score=31.40 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|.-||||||+.+.+.-
T Consensus 45 ~~~llGpSGsGKSTLlr~iaG 65 (378)
T PRK09452 45 FLTLLGPSGCGKTTVLRLIAG 65 (378)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999998999769999999976
No 378
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.93 E-value=0.1 Score=31.22 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|..||||||..+.+.-
T Consensus 35 ~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999837
No 379
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.93 E-value=0.097 Score=31.33 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 28 i~~iiGpnGaGKSTLl~~i~G 48 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999996899999999999707
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=92.92 E-value=0.095 Score=31.41 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++-++|+-||||||.|..|--
T Consensus 351 lvFliG~NGsGKST~~~LLtG 371 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTG 371 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899988899638899999970
No 381
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=92.91 E-value=0.086 Score=31.68 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHH-HHC--CCEE
Q ss_conf 59998888666789999999-977--9869
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFL-KKE--KIPV 28 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l-~~~--G~~v 28 (199)
+.++++||.|||||+....| ..+ +|..
T Consensus 14 FrmaivGgSGSGKT~yLlsLf~tlv~kykh 43 (241)
T pfam04665 14 FRMAIVGGSGSGKTTYLLSLLRTLVRKFKH 43 (241)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHEE
T ss_conf 359998158875669999999999774158
No 382
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=92.91 E-value=0.096 Score=31.38 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
+++|.|..||||||..+.+.-+
T Consensus 30 ~~~llGpSGsGKSTLlr~iaGL 51 (352)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGL 51 (352)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999984699999999769
No 383
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.90 E-value=0.097 Score=31.34 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|..||||||..+.+.-
T Consensus 33 i~giIG~SGaGKSTLlr~i~g 53 (343)
T PRK11153 33 IYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999869999999965
No 384
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.90 E-value=0.096 Score=31.37 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 29 ~~aliG~nGaGKSTLl~~i~G 49 (273)
T PRK13547 29 VTALLGRNGAGKSTLLKVLAG 49 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999769999999956
No 385
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.88 E-value=0.1 Score=31.27 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 33 i~~liG~NGaGKSTLl~~i~G 53 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999987999759999999967
No 386
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.87 E-value=0.1 Score=31.14 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 29 i~~liGpNGaGKSTLlk~l~G 49 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999809999999966
No 387
>KOG0058 consensus
Probab=92.86 E-value=0.11 Score=30.92 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 59998888666789999999977
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~ 24 (199)
.++++.|.-||||||+++.|..+
T Consensus 495 e~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058 495 EVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 77999889998889999999973
No 388
>CHL00175 minD septum-site determining protein; Validated
Probab=92.84 E-value=0.72 Score=25.88 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=59.0
Q ss_pred EEEEEECC-CCCCHHHHHHH----HHHCC--CEEEEHHHHHHH---HHH--HHHHHHHHHHH-HHCCCCCCCCCCCH-H-
Q ss_conf 59998888-66678999999----99779--869990499999---850--00011356653-10001222111000-1-
Q gi|255764477|r 2 LIIGLTGS-IGTGKTTVAEF----LKKEK--IPVISSDDIVDK---LYH--YEAVDIIKKTF-PRSIQNNKVNKARL-L- 66 (199)
Q Consensus 2 ~iIgitG~-igSGKStv~~~----l~~~G--~~v~~aD~i~~~---l~~--~~~~~~i~~~f-g~~i~~~~i~r~~l-~- 66 (199)
.+|+|+.+ =|.||||++-- |++.| .-++|+|--... +++ +.....+.+.+ |..-.+..+-+... .
T Consensus 14 kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~~~~~~~ 93 (279)
T CHL00175 14 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVLEGECRLDQALIRDKRWPN 93 (279)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCC
T ss_conf 69999748998448999999999999789988999578999987532686666667476640787664301342577787
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCHHHHH
Q ss_conf -11100124678887534899999999766774202476333456432555---875642278999521113568
Q gi|255764477|r 67 -GILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK---RKEYLFDAVVVVTCSFETQRE 137 (199)
Q Consensus 67 -~~vf~~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~---~~~~~~d~vi~V~a~~~~r~~ 137 (199)
..+-.+. .. .. .+.-......++.......++|+++|.|-=+-. ..-.-.|.+|.|..|+...+.
T Consensus 94 l~ll~~~~-~~-~~----~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl~~~~~~al~aad~viIvttpe~~al~ 162 (279)
T CHL00175 94 LSLLPISK-NR-QR----YNVTRKNMNMLVDSLKERNYDYILIDCPAGIDVGFINAIAPAKEAIVVTTPEITAIR 162 (279)
T ss_pred EEEEECCC-HH-HH----HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCCHHHHH
T ss_conf 79997897-05-44----574199999999999727999999818998889999999978906997899789999
No 389
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.79 E-value=0.11 Score=31.05 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
-|-|+|..||||||..+.+-..
T Consensus 27 nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899999899999999961
No 390
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.79 E-value=0.07 Score=32.22 Aligned_cols=21 Identities=43% Similarity=0.752 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 28 i~~liG~nGaGKSTll~~l~G 48 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred EEEEECCCCCCCCHHHHHHCC
T ss_conf 999988899992637787669
No 391
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.78 E-value=0.11 Score=30.94 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||+.+.+.-
T Consensus 30 i~~l~G~NGaGKTTLlk~i~G 50 (206)
T PRK13539 30 ALVLTGPNGSGKTTLLRLLAG 50 (206)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999989999999958
No 392
>PRK13409 putative ATPase RIL; Provisional
Probab=92.76 E-value=0.11 Score=31.06 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5999888866678999999997
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~ 23 (199)
.++||.|--|+||||+.++|+-
T Consensus 100 ~v~GLiG~NGaGKST~lkILsG 121 (590)
T PRK13409 100 KVTGILGPNGIGKSTAVKILSG 121 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7899889999989999999958
No 393
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.74 E-value=0.11 Score=30.89 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++|+.|.-||||||..+.+.-
T Consensus 28 i~~lvG~nGaGKSTl~~~i~G 48 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998899899999999957
No 394
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.73 E-value=0.095 Score=31.41 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9998888666789999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL 21 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l 21 (199)
++||+|.-||||||.++-.
T Consensus 23 ~~~iiG~nGsGKSTLl~~~ 41 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999999899999988
No 395
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=92.72 E-value=0.11 Score=30.89 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 59998888666789999999977
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~ 24 (199)
..|||.|..||||||+...|..+
T Consensus 1196 qkVaiVGrSGsGKSTii~lL~Rf 1218 (1467)
T PTZ00265 1196 KTTAIVGETGSGKSTFMNLLLRF 1218 (1467)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998399999999977
No 396
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=92.70 E-value=0.11 Score=30.94 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|.-||||||..+.+.-.
T Consensus 32 ~~~iiGpNGaGKSTLlk~i~Gl 53 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999989996099999999756
No 397
>KOG1533 consensus
Probab=92.70 E-value=0.095 Score=31.39 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=26.3
Q ss_pred EEEEEECCCCCCHHHHH----HHHHHCC--CEEEEHHHHHHHH
Q ss_conf 59998888666789999----9999779--8699904999998
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVA----EFLKKEK--IPVISSDDIVDKL 38 (199)
Q Consensus 2 ~iIgitG~igSGKStv~----~~l~~~G--~~v~~aD~i~~~l 38 (199)
+--.|+|.+||||||.| ++|+..| +.++|.|-.-..+
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~ 45 (290)
T KOG1533 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNL 45 (290)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 5068876999985311320999999748962799568765678
No 398
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.67 E-value=0.12 Score=30.78 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 32 i~~LiGpNGaGKSTLlk~I~G 52 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999889999999966
No 399
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.65 E-value=0.12 Score=30.85 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|-.||||||..+.+.-
T Consensus 28 ~~~i~GpSG~GKSTlLr~iaG 48 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998809999999976
No 400
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.63 E-value=0.12 Score=30.73 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+.|.|-.||||||..++++-
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989997889999999968
No 401
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.62 E-value=0.12 Score=30.71 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 27 ~~~liGpNGaGKSTllk~i~G 47 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999869999999976
No 402
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.62 E-value=0.11 Score=30.98 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||+++.+.-
T Consensus 276 ivgl~G~nGsGKsTL~~~l~G 296 (491)
T PRK10982 276 ILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899778999978899999819
No 403
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=92.61 E-value=0.065 Score=32.45 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 59998888666789999999977
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~ 24 (199)
++|.+.|..||||||.|+-|...
T Consensus 1 Kr~~f~G~~gCGKTTL~q~L~g~ 23 (144)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGE 23 (144)
T ss_pred CEEEEEECCCCCHHHHHHHCCCC
T ss_conf 91788715888744354311687
No 404
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.60 E-value=0.12 Score=30.69 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++|+.|.-||||||..+.+.-
T Consensus 28 i~gl~G~NGaGKSTLl~~i~G 48 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999987899799999999976
No 405
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.58 E-value=0.11 Score=31.07 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.++|+|..||||||..+.+.=
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999988999889999999537
No 406
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.57 E-value=0.12 Score=30.69 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 30 i~~liGpNGaGKSTLlk~i~G 50 (257)
T PRK13548 30 VVAILGPNGAGKSTLLRALSG 50 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999879999999856
No 407
>KOG0055 consensus
Probab=92.56 E-value=0.13 Score=30.58 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=17.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5999888866678999999997
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~ 23 (199)
..+++.|..||||||+.+.|.-
T Consensus 380 ~~valVG~SGsGKST~i~LL~R 401 (1228)
T KOG0055 380 QTVALVGPSGSGKSTLIQLLAR 401 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 8899988999879999999997
No 408
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=92.54 E-value=0.13 Score=30.64 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 31 i~~liGpNGaGKSTLl~~i~G 51 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999988999869999999967
No 409
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=92.54 E-value=0.098 Score=31.32 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEECCCCCCHHHHHHHHHH-CCCE--EEEH
Q ss_conf 9888866678999999997-7986--9990
Q gi|255764477|r 5 GLTGSIGTGKTTVAEFLKK-EKIP--VISS 31 (199)
Q Consensus 5 gitG~igSGKStv~~~l~~-~G~~--v~~a 31 (199)
-+.|.+|+||||+|+++++ .+.. +.++
T Consensus 54 lf~GPPG~GKTTlAriiAk~~~~~~~~~s~ 83 (234)
T pfam05496 54 LLYGPPGLGKTTLANIIANEMGVNIRITSG 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 887899998889999999840875376142
No 410
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.50 E-value=0.11 Score=31.08 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|..||||||+++.+.-
T Consensus 352 ~l~lvG~sGsGKSTl~r~l~g 372 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899976787668999999856
No 411
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=92.49 E-value=0.11 Score=30.93 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHHHHHHHHH
Q ss_conf 999888866678999999997-----798699904999998500
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDIVDKLYHY 41 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~aD~i~~~l~~~ 41 (199)
.+|+-|..||||||..+.++= .|--.++--++.+.-...
T Consensus 28 lvaLLGPSGSGKsTLLR~iAGLe~pd~G~I~~~G~D~t~~~~~~ 71 (241)
T TIGR00968 28 LVALLGPSGSGKSTLLRVIAGLEQPDSGRIILNGRDATRVKLRD 71 (241)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 79854689873789999983579998426998520022132013
No 412
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=92.48 E-value=0.12 Score=30.83 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||.++.+.-
T Consensus 36 ~v~i~G~nGsGKSTll~~l~g 56 (648)
T PRK10535 36 MVAIVGASGSGKSTLMNILGC 56 (648)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999629999999956
No 413
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=92.47 E-value=0.12 Score=30.76 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|-.||||||++..+--
T Consensus 37 ~lgIvGESGsGKSt~a~~i~g 57 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMG 57 (539)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899986898888999999855
No 414
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=92.46 E-value=0.12 Score=30.75 Aligned_cols=20 Identities=50% Similarity=0.542 Sum_probs=16.7
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 59998888666789999999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFL 21 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l 21 (199)
-++-|||++|||||-++-.|
T Consensus 2 ~v~~V~G~pGtGKTvv~l~l 21 (348)
T pfam09848 2 AVFLVTGGPGTGKTVVALNL 21 (348)
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 79999777993899999999
No 415
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=92.46 E-value=0.12 Score=30.81 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
+++|.|..||||||..+.+.-+
T Consensus 32 ~~~llGpsG~GKTTllr~iaGl 53 (358)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGL 53 (358)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999863699999999769
No 416
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.43 E-value=0.13 Score=30.63 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 28 i~~liG~nGaGKSTLl~~i~G 48 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999859999999977
No 417
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.40 E-value=0.12 Score=30.77 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|..||||||+++.+.-
T Consensus 280 i~gi~G~nGsGKsTL~~~l~G 300 (501)
T PRK10762 280 ILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899667888768899999818
No 418
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.36 E-value=0.14 Score=30.44 Aligned_cols=21 Identities=48% Similarity=0.707 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 30 i~~llG~NGaGKSTLl~~i~G 50 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999739999999966
No 419
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.35 E-value=0.14 Score=30.38 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 27 ~~~liG~nGsGKTTLl~~i~G 47 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999889999999957
No 420
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.33 E-value=0.13 Score=30.48 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 28 i~~iiGpnGaGKSTl~~~i~G 48 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999739999999975
No 421
>PRK06851 hypothetical protein; Provisional
Probab=92.32 E-value=0.21 Score=29.22 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHH----HHCCCEE
Q ss_conf 959998888666789999999----9779869
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFL----KKEKIPV 28 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l----~~~G~~v 28 (199)
+.++-|.||+|+||||+-+.+ .+.|+.|
T Consensus 31 ~ri~ilKGGpGtGKStlmK~ig~~~~~~GydV 62 (368)
T PRK06851 31 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDV 62 (368)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 27999968999778999999999999689837
No 422
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.31 E-value=0.13 Score=30.52 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEHH
Q ss_conf 999888866678999999997-----798699904
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISSD 32 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~aD 32 (199)
.+|++|..||||||..++.+- .|--+++-.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~ 64 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR 64 (345)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 89997789876788999985757788756999998
No 423
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=92.30 E-value=0.12 Score=30.66 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||+++.+.-
T Consensus 291 i~gl~G~nGsGKsTL~~~l~G 311 (510)
T PRK09700 291 ILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899976888628899999819
No 424
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.29 E-value=0.14 Score=30.36 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 28 i~gliG~nGaGKSTL~~~i~G 48 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999739999999967
No 425
>PRK13764 ATPase; Provisional
Probab=92.29 E-value=0.12 Score=30.81 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHH----CCCEE
Q ss_conf 99888866678999999997----79869
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK----EKIPV 28 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~----~G~~v 28 (199)
|-|.|.+||||||++.-+++ +|+.|
T Consensus 262 ilIaG~PGaGKsTfaqalA~~~~~~g~iV 290 (605)
T PRK13764 262 ILIAGAPGAGKSTFAQALAEFYADMGKIV 290 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 99977999977899999999998479789
No 426
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=92.22 E-value=0.079 Score=31.90 Aligned_cols=28 Identities=43% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHH---HH--HCCCEEE
Q ss_conf 5999888866678999999---99--7798699
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEF---LK--KEKIPVI 29 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~---l~--~~G~~v~ 29 (199)
||..+||.+|||||..+=. +. +.|=+|+
T Consensus 1 MI~litG~pGsGKS~~aV~~~i~~al~~GR~V~ 33 (183)
T pfam05707 1 MIYLITGKPGSGKTLEAVSYHILPALKKGRKVI 33 (183)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 979993599996229999999999987899899
No 427
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.20 E-value=0.12 Score=30.78 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=15.9
Q ss_pred EEEEEECCCCCCHHHHHH
Q ss_conf 599988886667899999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAE 19 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~ 19 (199)
.++||+|.-||||||..+
T Consensus 22 ~~~aIiG~sGsGKSTLl~ 39 (261)
T cd03271 22 VLTCVTGVSGSGKSSLIN 39 (261)
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 999998799986999999
No 428
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.18 E-value=0.13 Score=30.45 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|..||||||..+.+.-
T Consensus 31 ~~~llGpsG~GKSTllr~i~G 51 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999997369999999977
No 429
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=92.17 E-value=0.14 Score=30.31 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++|+.|.-||||||..+.+.-
T Consensus 49 i~gLlGpNGaGKSTllk~l~G 69 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998309999999964
No 430
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.16 E-value=0.14 Score=30.35 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9998888666789999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFL 21 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l 21 (199)
+.+|+|..||||||+..-+
T Consensus 32 LFlI~G~TGAGKSTIlDAI 50 (1047)
T PRK10246 32 LFAITGPTGAGKTTLLDAI 50 (1047)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 7888899999889999999
No 431
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=92.14 E-value=0.13 Score=30.45 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
.++|.|-.||||||..+-+..+
T Consensus 30 ~~~~IG~SGAGKSTLLR~iNrL 51 (253)
T TIGR02315 30 FVAVIGPSGAGKSTLLRCINRL 51 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7999737887267999877530
No 432
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.12 E-value=0.14 Score=30.25 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
+.+|+|--||||||+.+.+.
T Consensus 24 itaivG~NGaGKSTLl~~i~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999899999999999986
No 433
>PRK06851 hypothetical protein; Provisional
Probab=92.04 E-value=0.21 Score=29.24 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCEEE
Q ss_conf 5999888866678999999997----798699
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK----EKIPVI 29 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~----~G~~v~ 29 (199)
.+..|.|.+||||||+.+.+.+ +|+.|-
T Consensus 216 ~~y~ikG~pGtGKstlL~~i~~~A~~~G~dve 247 (368)
T PRK06851 216 NRYFLKGRPGTGKSTMLKKVAKAAEERGLDVE 247 (368)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 69998189998779999999999998598289
No 434
>COG4240 Predicted kinase [General function prediction only]
Probab=92.02 E-value=0.14 Score=30.44 Aligned_cols=34 Identities=32% Similarity=0.650 Sum_probs=25.2
Q ss_pred EEEEEECCCCCCHHHHHHHHH----HCC-C--EEEEHHHHH
Q ss_conf 599988886667899999999----779-8--699904999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLK----KEK-I--PVISSDDIV 35 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~----~~G-~--~v~~aD~i~ 35 (199)
+++||.|.-||||||.|..+. .+| . ..+|-|+..
T Consensus 51 li~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY 91 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY 91 (300)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf 39985268887653599999999997365306886645531
No 435
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.01 E-value=0.14 Score=30.36 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+|+.|.-||||||.++.++-
T Consensus 41 TlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799982699747589999835
No 436
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=92.00 E-value=0.17 Score=29.82 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=29.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHH
Q ss_conf 599988886667899999999779869990499999850
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYH 40 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~ 40 (199)
++|+|-|+-.|||||+++-|++. +-.=+|-+-+|++-.
T Consensus 176 k~V~ilG~eStGKstLv~~lA~~-~nt~~~~Eyar~y~e 213 (346)
T TIGR01526 176 KTVAILGGESTGKSTLVNKLAEK-LNTTSAWEYAREYVE 213 (346)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HCCCCCHHHHHHHHH
T ss_conf 58888558886368999999998-468871256556666
No 437
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.99 E-value=0.13 Score=30.56 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
-|.|+|+.||||||..+.|-.
T Consensus 151 nilI~G~TgsGKTTll~all~ 171 (320)
T PRK13894 151 NILVIGGTGSGKTTLVNAIIN 171 (320)
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 589985888656899999986
No 438
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.96 E-value=0.15 Score=30.11 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 33 i~~liGpnGaGKSTL~~~i~G 53 (255)
T PRK11300 33 VVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999649999999967
No 439
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.94 E-value=0.21 Score=29.20 Aligned_cols=40 Identities=35% Similarity=0.604 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHH----HHHHHCCCE--EEEHHHHHHHHHHHHHHHHH
Q ss_conf 9998888666789999----999977986--99904999998500001135
Q gi|255764477|r 3 IIGLTGSIGTGKTTVA----EFLKKEKIP--VISSDDIVDKLYHYEAVDII 47 (199)
Q Consensus 3 iIgitG~igSGKStv~----~~l~~~G~~--v~~aD~i~~~l~~~~~~~~i 47 (199)
+|=+.|--||||||.| .||+++|.. +++|| +|-+.+++.+
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD-----~~RpAA~eQL 147 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD-----TYRPAAIEQL 147 (451)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----CCCHHHHHHH
T ss_conf 899981567974868999999999749945898505-----6786899999
No 440
>PTZ00243 ABC transporter; Provisional
Probab=91.92 E-value=0.15 Score=30.24 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
.++|+|..||||||...-+-
T Consensus 688 L~~IvG~vGSGKSSLL~aiL 707 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLL 707 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998999987999999996
No 441
>PRK13542 consensus
Probab=91.88 E-value=0.17 Score=29.81 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|.-||||||..+.+.-
T Consensus 46 i~~liGpNGaGKTTLlk~l~G 66 (224)
T PRK13542 46 LLQVMGPNGSGKTSLLRVLSG 66 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999999999999957
No 442
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.87 E-value=0.17 Score=29.82 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHH
Q ss_conf 999888866678999999997-----79869990499
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDI 34 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G~~v~~aD~i 34 (199)
++.|.|..||||||..+-+.- .|--.++-+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
T ss_conf 8999899999888999999778688786499998722
No 443
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.87 E-value=0.16 Score=30.04 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||+|-.|||||+.+..+-.
T Consensus 33 ~lgiVGESGsGKS~~~~aim~ 53 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMG 53 (316)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899983897889999999984
No 444
>PRK13409 putative ATPase RIL; Provisional
Probab=91.83 E-value=0.17 Score=29.79 Aligned_cols=21 Identities=43% Similarity=0.752 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+|||+|.-||||||+++.|.-
T Consensus 367 iigIvG~NGaGKTTLlKiLaG 387 (590)
T PRK13409 367 VIGIVGPNGIGKTTFVKLLAG 387 (590)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899988888878999999828
No 445
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.80 E-value=0.18 Score=29.74 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++|+.|.-||||||..+.+.-
T Consensus 33 i~gllG~NGaGKSTllk~i~G 53 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999849999999977
No 446
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.80 E-value=0.083 Score=31.79 Aligned_cols=18 Identities=50% Similarity=0.490 Sum_probs=14.9
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 988886667899999999
Q gi|255764477|r 5 GLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 5 gitG~igSGKStv~~~l~ 22 (199)
=|+|.+|||||++|--|.
T Consensus 3 Li~G~pGsGKT~~a~qfl 20 (187)
T cd01124 3 LLSGGPGTGKTTFALQFL 20 (187)
T ss_pred EEEECCCCCHHHHHHHHH
T ss_conf 587689999999999999
No 447
>PRK06526 transposase; Provisional
Probab=91.79 E-value=0.6 Score=26.37 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=29.8
Q ss_pred EEEECCCCCCHHHHHHHHH----HCCCE--EEEHHHHHHHHHH
Q ss_conf 9988886667899999999----77986--9990499999850
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLK----KEKIP--VISSDDIVDKLYH 40 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~----~~G~~--v~~aD~i~~~l~~ 40 (199)
|-++|.+|+|||.+|.-|. +.|+. .+.+++++.++..
T Consensus 101 vil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~ 143 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAA 143 (254)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH
T ss_conf 8998999986899999999999986996799877999999999
No 448
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=91.78 E-value=0.15 Score=30.08 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++||.|.-||||||..+.+.-+
T Consensus 47 ~~~llGpsGsGKSTllr~i~Gl 68 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999984899999999769
No 449
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=91.77 E-value=0.16 Score=29.93 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
+++|.|-.||||||..+.+.-+
T Consensus 33 ~~~llGpSG~GKTTlLr~iaGL 54 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999974599999999777
No 450
>PRK04328 hypothetical protein; Provisional
Probab=91.72 E-value=0.12 Score=30.74 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CC--CEEEEHHHHHHHHH
Q ss_conf 999888866678999999997----79--86999049999985
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EK--IPVISSDDIVDKLY 39 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G--~~v~~aD~i~~~l~ 39 (199)
.+-|+|.+|||||+.|--|.. .| .-+++.++-..+++
T Consensus 26 ~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~~~~l~ 68 (250)
T PRK04328 26 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVR 68 (250)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHH
T ss_conf 9999828999989999999999987699779999727999999
No 451
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=91.72 E-value=0.23 Score=28.95 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CCCEEE
Q ss_conf 999888866678999999997----798699
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EKIPVI 29 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G~~v~ 29 (199)
-|+|||+.|||||...+-+.. .|..|+
T Consensus 491 N~~~~g~sG~GKSf~~Q~~~~~~L~~G~kv~ 521 (900)
T TIGR02746 491 NIAVVGGSGAGKSFFMQELIVSVLSRGGKVW 521 (900)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 4899728898716879899999851798489
No 452
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.72 E-value=0.18 Score=29.63 Aligned_cols=21 Identities=33% Similarity=0.749 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|--||||||..+.++-
T Consensus 52 ~vGIIG~NGAGKSTLLKiIaG 72 (549)
T PRK13545 52 IVGIVGLNGSGKSTLSNLIAG 72 (549)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999988999989999999968
No 453
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=91.71 E-value=0.18 Score=29.72 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 30 i~~liGpNGaGKSTLlk~i~G 50 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999819999999975
No 454
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.69 E-value=0.12 Score=30.85 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99888866678999999997
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~ 23 (199)
|-+|||+||||||.-...-.
T Consensus 40 ~LvTG~~GSGKSTLIDAITa 59 (1104)
T COG4913 40 ILVTGGSGSGKSTLIDAITA 59 (1104)
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 57746888870109998999
No 455
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.68 E-value=0.28 Score=28.45 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=25.6
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEEHHHH
Q ss_conf 9988886667899999999779869990499
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKKEKIPVISSDDI 34 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~~G~~v~~aD~i 34 (199)
+-|||..|+|||+.|--|-++|...+.-|.+
T Consensus 17 vLi~G~SG~GKS~lal~Li~rGh~LVaDD~v 47 (149)
T cd01918 17 VLITGPSGIGKSELALELIKRGHRLVADDRV 47 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEECCEE
T ss_conf 9998789999899999999819978727879
No 456
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.63 E-value=0.29 Score=28.39 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH----CCCEEE--EHHHHHHHH
Q ss_conf 999888866678999999997----798699--904999998
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK----EKIPVI--SSDDIVDKL 38 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~----~G~~v~--~aD~i~~~l 38 (199)
++-|+|.+|||||+++.-|.. .|.+|+ +.|.-..++
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHH
T ss_conf 899993899868999999999776269858999920698999
No 457
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=91.62 E-value=0.16 Score=30.05 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 35 ~~~iiGpNGaGKSTLlk~i~G 55 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999988399999999974
No 458
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=91.58 E-value=0.18 Score=29.72 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++||.|.-||||||..+.+.-
T Consensus 25 ~v~iiGpNGaGKSTLlk~i~G 45 (245)
T PRK03695 25 ILHLVGPNGAGKSTLLARMAG 45 (245)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999997899419999999846
No 459
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.56 E-value=0.29 Score=28.34 Aligned_cols=31 Identities=39% Similarity=0.531 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHH----HCC--CEEEEHHH
Q ss_conf 99988886667899999999----779--86999049
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK----KEK--IPVISSDD 33 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~----~~G--~~v~~aD~ 33 (199)
+|.+.|..|+||||-+-.|+ +.| ..++++|-
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999899999889999999999997699289997488
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.46 E-value=0.19 Score=29.52 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
.|-|||..||||||....+-
T Consensus 3 liLitG~TGSGKTTtl~all 22 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMI 22 (198)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998999997999999999
No 461
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=91.45 E-value=0.17 Score=29.75 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+||-|+-||||||.-+.|+.
T Consensus 60 LlA~mGsSGAGKTTLmn~La~ 80 (671)
T TIGR00955 60 LLAIMGSSGAGKTTLMNALAF 80 (671)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 689847876626899999853
No 462
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=91.41 E-value=0.13 Score=30.62 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=32.2
Q ss_pred EEEECCCCCCHHHHHHHHHH-----CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99888866678999999997-----79869990499999850000113566531000122211
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-----EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVN 61 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-----~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~ 61 (199)
+=|||-.|+||||..+.+-. .|---++--++.+ |.......+....|-.|+|..+-
T Consensus 31 ~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~G~~~~~--l~~~~~P~LRR~iGvvFQDf~LL 91 (215)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGALTPSRGQVRVAGEDVSR--LRGRQLPLLRRRIGVVFQDFRLL 91 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEECCC--CCCCCCHHHHCCCCEEEECCCCC
T ss_conf 78872778617899999985269875808888740466--77564312213154378422110
No 463
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=91.41 E-value=0.17 Score=29.82 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+++|.|..||||||..+.+.-
T Consensus 34 ~~~llGpSG~GKTTlLr~iaG 54 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999996499999999976
No 464
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=0.2 Score=29.40 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.|+|.|..||||||..+.+..
T Consensus 366 kvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 688877999878999999972
No 465
>PRK06921 hypothetical protein; Provisional
Probab=91.37 E-value=0.29 Score=28.40 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHH-----HCCCEEEE
Q ss_conf 9988886667899999999-----77986999
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLK-----KEKIPVIS 30 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~-----~~G~~v~~ 30 (199)
++++|.+|+|||..|.-.+ +.|.+|+-
T Consensus 119 l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly 150 (265)
T PRK06921 119 IALLGQPGSGKTHLLTAAANELMRKKGVPVLY 150 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 79972898988999999999999962971999
No 466
>KOG4238 consensus
Probab=91.33 E-value=0.087 Score=31.65 Aligned_cols=75 Identities=28% Similarity=0.323 Sum_probs=42.0
Q ss_pred EEEEECCCCCCHHHHHHHHH----HCCCEEEEH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH--HHHHHHHH
Q ss_conf 99988886667899999999----779869990--49999985000011356653100012221110001--11100124
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK----KEKIPVISS--DDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLL--GILQKSPA 74 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~----~~G~~v~~a--D~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~--~~vf~~~~ 74 (199)
.|=+||..|+||||++=.|+ .+|+|++.. |.|-|-+-++- |=+..|.+-|-.+++ ...|.|.
T Consensus 52 tvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knl---------gfs~edreenirriaevaklfada- 121 (627)
T KOG4238 52 TVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNL---------GFSPEDREENIRRIAEVAKLFADA- 121 (627)
T ss_pred EEEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 5874304778852420789999986598510347602666554126---------988355788899999999987357-
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6788875348999
Q gi|255764477|r 75 KLEILEKIVHPMV 87 (199)
Q Consensus 75 ~l~~L~~iiHP~V 87 (199)
-+-.+.++|.|.-
T Consensus 122 glvcitsfispf~ 134 (627)
T KOG4238 122 GLVCITSFISPFA 134 (627)
T ss_pred CCEEHHHHCCHHH
T ss_conf 7142103348344
No 467
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=91.31 E-value=0.088 Score=31.62 Aligned_cols=167 Identities=18% Similarity=0.289 Sum_probs=76.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHH--HH-HHCC---CCCCCCCCCHHHHHHHHHH
Q ss_conf 9599988886667899999999779869990499999850000113566--53-1000---1222111000111100124
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKK--TF-PRSI---QNNKVNKARLLGILQKSPA 74 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~--~f-g~~i---~~~~i~r~~l~~~vf~~~~ 74 (199)
|..||+.|.+|||||.+.+.|.+.=..-++.--+..++|..+-.+.+.. .. ++.+ ..|.--..++++-. .-
T Consensus 1 ~~~iG~~GPvG~Gktal~e~l~~~~~~~y~~av~tndiyt~eda~fl~~~~~l~~~ri~GvetGGCPhtaireda---s~ 77 (199)
T TIGR00101 1 MVKIGVAGPVGSGKTALIEALTRELAKKYDLAVITNDIYTQEDAEFLVKNSVLPPERILGVETGGCPHTAIREDA---SL 77 (199)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH---HH
T ss_conf 936665047776468999999998874066778731100124688887641266222677415898730010002---12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--------CCCEEEEEE-ECCCHHHHHHHHHHCCC
Q ss_conf 678887534899999999766774202476333456432555875--------642278999-52111356888871798
Q gi|255764477|r 75 KLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKE--------YLFDAVVVV-TCSFETQRERVLSRKKH 145 (199)
Q Consensus 75 ~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~--------~~~d~vi~V-~a~~~~r~~Rl~~R~~~ 145 (199)
++..++.+ ...+.-+|+ +++|++.+ ...|.++|| +.-.-..+-|- ---|.
T Consensus 78 nl~a~~~~-------------------~~rf~~~~~-~~~esGGdnl~atf~P~l~d~t~~vidva~G~kiPrk-GGPGi 136 (199)
T TIGR00101 78 NLEAVEEL-------------------EARFPDLEL-VFIESGGDNLSATFSPELADLTIFVIDVAEGDKIPRK-GGPGI 136 (199)
T ss_pred HHHHHHHH-------------------HHCCCCEEE-EEEECCCCCCEEECCCCEEEEEEEEEEECCCCCCCCC-CCCCC
T ss_conf 18899988-------------------621564048-9983288620000276402367889972058745677-88985
Q ss_pred CHHHHHHHHHCCCC-----------HHHH--HHHCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 98999999972999-----------7899--98689899879998999999999999999
Q gi|255764477|r 146 TEENFLFILSKQMN-----------EKDK--ISRADYVINTEGTIEAIEKETQKMLKYIL 192 (199)
Q Consensus 146 s~e~~~~~~~~Q~~-----------~~~k--~~~aD~vI~N~~s~~~l~~~i~~~~~~i~ 192 (199)
++.+..-+.+..+. .+.+ +...-|+..|-.+.+.|.. +-.+++.+.
T Consensus 137 t~sdllvink~dlaP~vGadl~~m~rd~~~mr~~~Pf~ftn~~~~~~l~~-v~~~~~~~~ 195 (199)
T TIGR00101 137 TRSDLLVINKIDLAPFVGADLKVMERDAKKMRGEKPFIFTNLKKKEGLDD-VIDFIEKYA 195 (199)
T ss_pred CCHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHCCHHH-HHHHHHHHH
T ss_conf 30012243200125311230354435678640699746640033203679-999998753
No 468
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.29 E-value=0.2 Score=29.31 Aligned_cols=20 Identities=45% Similarity=0.720 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
.|||+|--|+||||+.++++
T Consensus 31 riGLvG~NGaGKSTLLkila 50 (530)
T COG0488 31 RIGLVGRNGAGKSTLLKILA 50 (530)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998999898899999982
No 469
>KOG0736 consensus
Probab=91.29 E-value=0.2 Score=29.34 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-CCCEEEEHH
Q ss_conf 999888866678999999997-798699904
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-EKIPVISSD 32 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-~G~~v~~aD 32 (199)
.+=++|.+||||+|+.++++. +|.+++..|
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evd 463 (953)
T KOG0736 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVD 463 (953)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 7998679998757999999998387257013
No 470
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.28 E-value=0.21 Score=29.20 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+++.|-.||||||..+.++=
T Consensus 31 f~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989998888999999968
No 471
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter; InterPro: IPR005898 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. This model describes a family of cyclic peptide transporters in bacteria. Syringomycin is an amphipathic, cyclic lipodepsipeptide when inserted into host causes formation of channels, permeable to a variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.; GO: 0005524 ATP binding, 0015197 peptide transporter activity, 0015833 peptide transport, 0016021 integral to membrane.
Probab=91.28 E-value=0.19 Score=29.51 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
+|=|.|+-||||||.++.|-
T Consensus 370 ~VyIVG~NGCGK~TL~K~l~ 389 (555)
T TIGR01194 370 LVYIVGENGCGKSTLIKLLL 389 (555)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89996488973899999997
No 472
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=91.26 E-value=0.18 Score=29.65 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
+.+|=|-=||||||.|+.+.=+
T Consensus 28 ~HAiMGPNGsGKSTL~~~iaGh 49 (248)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7998688998478887776179
No 473
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.24 E-value=0.27 Score=28.61 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 5999888866678999999997798
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEKI 26 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G~ 26 (199)
+.|++.|..||||||.+..|...-+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999988999999964767
No 474
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.24 E-value=0.22 Score=29.13 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++|+.|.-||||||..+.+.-
T Consensus 28 i~gllG~NGaGKSTLl~~i~G 48 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999999999999957
No 475
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.22 E-value=0.15 Score=30.20 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 9998888666789999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVA 18 (199)
Q Consensus 3 iIgitG~igSGKStv~ 18 (199)
++||+|.-||||||.+
T Consensus 23 ~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 23 LVVITGVSGSGKSSLA 38 (226)
T ss_pred EEEEECCCCCHHHHHH
T ss_conf 9999878996098983
No 476
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.17 E-value=0.21 Score=29.29 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=63.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CC-------CEEEEHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 999888866678999999997-----79-------86999049999985-000011356653100012221110001111
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK-----EK-------IPVISSDDIVDKLY-HYEAVDIIKKTFPRSIQNNKVNKARLLGIL 69 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~-----~G-------~~v~~aD~i~~~l~-~~~~~~~i~~~fg~~i~~~~i~r~~l~~~v 69 (199)
+|||+|.-|+||||..+.+.. -| ..+---|+-...+. .....+.+...++... ..--|..|+...
T Consensus 350 rIaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~--e~~~r~~L~~f~ 427 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD--EQEVRAYLGRFG 427 (530)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEEEEEEEHHHCCCCCCHHHHHHHHCCCCC--HHHHHHHHHHCC
T ss_conf 899989998778999999852135677259957967899987003102766779999986465432--899999999849
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---------CCCCCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 0012467888753489999999976677420247633345643---------2555875642278999521113568888
Q gi|255764477|r 70 QKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPL---------LFEKRKEYLFDAVVVVTCSFETQRERVL 140 (199)
Q Consensus 70 f~~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pL---------L~E~~~~~~~d~vi~V~a~~~~r~~Rl~ 140 (199)
|..+...+.+..+-== .+.+-.+......+..+.+.|=|. ..|..+..+-.-|++|.-+... +.++.
T Consensus 428 F~~~~~~~~v~~LSGG---Ek~Rl~La~ll~~~pNvLlLDEPTNhLDi~s~eaLe~aL~~f~Gtvl~VSHDr~F-l~~va 503 (530)
T COG0488 428 FTGEDQEKPVGVLSGG---EKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYF-LDRVA 503 (530)
T ss_pred CCHHHHCCCHHHCCHH---HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHC
T ss_conf 9867963952225877---9999999998566997899728987679889999999998589869999489999-98333
Q ss_pred H
Q ss_conf 7
Q gi|255764477|r 141 S 141 (199)
Q Consensus 141 ~ 141 (199)
.
T Consensus 504 ~ 504 (530)
T COG0488 504 T 504 (530)
T ss_pred C
T ss_conf 2
No 477
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.17 E-value=0.17 Score=29.76 Aligned_cols=20 Identities=45% Similarity=0.551 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99888866678999999997
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~ 23 (199)
+=++|.+|+||||++..|.+
T Consensus 40 lLf~GppG~GKTt~a~~la~ 59 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALAR 59 (318)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 98889599889999999999
No 478
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.13 E-value=0.21 Score=29.24 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHH-----HCCCEEEEHHH
Q ss_conf 99988886667899999999-----77986999049
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK-----KEKIPVISSDD 33 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~-----~~G~~v~~aD~ 33 (199)
+.||.|+.||||||..+..- +.|-..++-.+
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~ 71 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGED 71 (263)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 899988988689999999856578988759984764
No 479
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=91.11 E-value=0.17 Score=29.82 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
.+.|+|.+||||||.+.+|+-
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~ 244 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLAL 244 (824)
T ss_pred HEEEECCCCCCHHHHHHHHHH
T ss_conf 333446888762679999999
No 480
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.11 E-value=0.18 Score=29.61 Aligned_cols=22 Identities=45% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
++=||||..||||..|.-+...
T Consensus 1 iiLVtGG~rSGKS~~AE~la~~ 22 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 9899778663689999999984
No 481
>PRK01156 chromosome segregation protein; Provisional
Probab=91.00 E-value=0.2 Score=29.43 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
+.+|+|..||||||+...+.
T Consensus 25 i~~I~G~NGaGKStIldAI~ 44 (895)
T PRK01156 25 INIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 27888999998789999999
No 482
>PRK08181 transposase; Validated
Probab=90.99 E-value=0.71 Score=25.93 Aligned_cols=38 Identities=29% Similarity=0.349 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHHH----HCCCEE--EEHHHHHHHHHH
Q ss_conf 99988886667899999999----779869--990499999850
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK----KEKIPV--ISSDDIVDKLYH 40 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~----~~G~~v--~~aD~i~~~l~~ 40 (199)
-|-++|.+|.|||.+|.-|. +.|+.| +.+++.+.++..
T Consensus 108 Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~ 151 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV 151 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
T ss_conf 08998999987889999999999987993999789999999999
No 483
>PRK09183 transposase/IS protein; Provisional
Probab=90.99 E-value=0.7 Score=25.96 Aligned_cols=38 Identities=34% Similarity=0.398 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHH----HCCCEE--EEHHHHHHHHHH
Q ss_conf 99988886667899999999----779869--990499999850
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK----KEKIPV--ISSDDIVDKLYH 40 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~----~~G~~v--~~aD~i~~~l~~ 40 (199)
-|-++|.+|.|||.+|.-|. +.|+.| +.+.+++.++..
T Consensus 103 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~ 146 (258)
T PRK09183 103 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLST 146 (258)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
T ss_conf 67998999986899999999999987993999789999999999
No 484
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=90.99 E-value=0.23 Score=29.02 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
+.||.|..||||||..+.+.-
T Consensus 26 i~~l~GpsGaGKTTLl~~iaG 46 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINLISG 46 (352)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999629999999976
No 485
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=90.95 E-value=0.17 Score=29.86 Aligned_cols=20 Identities=40% Similarity=0.436 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99888866678999999997
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~ 23 (199)
|=||||..||||..|.-+..
T Consensus 1 iLVtGG~rSGKS~~AE~la~ 20 (166)
T pfam02283 1 ILVTGGARSGKSRFAERLAL 20 (166)
T ss_pred CEEECCCCCCHHHHHHHHHH
T ss_conf 98868877338999999998
No 486
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.91 E-value=0.23 Score=29.03 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
-|-+.||.||||||..+.|..+
T Consensus 175 NILisGGTGSGKTTlLNal~~~ 196 (355)
T COG4962 175 NILISGGTGSGKTTLLNALSGF 196 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 5999678788799999999715
No 487
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.90 E-value=0.24 Score=28.84 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999888866678999999997
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~ 23 (199)
++|+.|.-||||||..+.+.-
T Consensus 28 i~gllG~NGaGKTTll~~i~G 48 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999849999999960
No 488
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=90.88 E-value=0.52 Score=26.80 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=26.4
Q ss_pred EEEEECCCCCCHHHHHHHHH----HCCCEE--EEHHHHHHHHH
Q ss_conf 99988886667899999999----779869--99049999985
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK----KEKIPV--ISSDDIVDKLY 39 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~----~~G~~v--~~aD~i~~~l~ 39 (199)
-|-++|.+|+|||.+|.-+. +.|+.| +.+.+...++.
T Consensus 49 Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T pfam01695 49 NLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLK 91 (178)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
T ss_conf 6899899998789999999999998698599996167999999
No 489
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.87 E-value=0.57 Score=26.54 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=27.4
Q ss_pred EEEECCCCCCHHHHHHHHHH-CCCEEEE--HHHHHHHHHH
Q ss_conf 99888866678999999997-7986999--0499999850
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EKIPVIS--SDDIVDKLYH 40 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G~~v~~--aD~i~~~l~~ 40 (199)
|=+.|-+|+|||..|+.++. .|++.+. +.++..+.++
T Consensus 169 vLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk~vG 208 (390)
T PRK03992 169 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG 208 (390)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHCCCC
T ss_conf 7868989997899999999874888799667997524541
No 490
>PRK08116 hypothetical protein; Validated
Probab=90.78 E-value=0.38 Score=27.60 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=23.8
Q ss_pred EEEECCCCCCHHHHHHHHH----HCCCEEE--EHHHHHHHH
Q ss_conf 9988886667899999999----7798699--904999998
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLK----KEKIPVI--SSDDIVDKL 38 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~----~~G~~v~--~aD~i~~~l 38 (199)
+-++|++|+|||.+|..++ +.|++|+ ++-++..++
T Consensus 111 Lll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~l 151 (262)
T PRK08116 111 LLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRI 151 (262)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
T ss_conf 89989899989999999999999879939998899999999
No 491
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=90.76 E-value=0.12 Score=30.68 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=21.9
Q ss_pred EECCCCCCHHHHHHHHH-----HCCCEEEEHHHHHH
Q ss_conf 88886667899999999-----77986999049999
Q gi|255764477|r 6 LTGSIGTGKTTVAEFLK-----KEKIPVISSDDIVD 36 (199)
Q Consensus 6 itG~igSGKStv~~~l~-----~~G~~v~~aD~i~~ 36 (199)
|-|..||||||+...|+ ..|--.+|--++.+
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~pd~G~i~ldg~d~~~ 36 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTE 36 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
T ss_conf 978888747999999834587775507756710121
No 492
>KOG0055 consensus
Probab=90.74 E-value=0.31 Score=28.19 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=24.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-----CCCEEEEH
Q ss_conf 5999888866678999999997-----79869990
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-----EKIPVISS 31 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-----~G~~v~~a 31 (199)
..+|+.|-.||||||+-..|+. -|.-.+|-
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg 1051 (1228)
T KOG0055 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDG 1051 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 88999889988799899999984388887599878
No 493
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.71 E-value=0.42 Score=27.38 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=26.6
Q ss_pred CEEEEEEC-CCCCCHHHHHH----HHHHCC--CEEEEHHHH
Q ss_conf 95999888-86667899999----999779--869990499
Q gi|255764477|r 1 MLIIGLTG-SIGTGKTTVAE----FLKKEK--IPVISSDDI 34 (199)
Q Consensus 1 M~iIgitG-~igSGKStv~~----~l~~~G--~~v~~aD~i 34 (199)
|.+|++++ .=|.||||.+- .|++.| .-++|+|--
T Consensus 1 MkiIav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlDpQ 41 (246)
T TIGR03371 1 MKVIAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 93999975999854999999999999968997899975999
No 494
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=90.69 E-value=0.2 Score=29.31 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99888866678999999997
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK 23 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~ 23 (199)
|-|.|.+|+||||+|..|++
T Consensus 266 ILIAG~PGaGKsTFaqAlAe 285 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAE 285 (604)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 69956999974689999999
No 495
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.65 E-value=0.26 Score=28.61 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99988886667899999999
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLK 22 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~ 22 (199)
++||.|--||||||..+.+.
T Consensus 30 i~~liGpNGaGKSTLl~~i~ 49 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVIT 49 (242)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899975999999996
No 496
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=90.63 E-value=0.3 Score=28.25 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=26.9
Q ss_pred EEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHH
Q ss_conf 99888866678999999997-798699904999
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIV 35 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G~~v~~aD~i~ 35 (199)
|-|.|-.|||||-.|+=|+. +.+|.-=||.-.
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L~VPfAiADATt 187 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARILNVPFAIADATT 187 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEECCHHH
T ss_conf 245468885268999999987388742111110
No 497
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=90.61 E-value=0.3 Score=28.23 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHH-CCCEEEE
Q ss_conf 99888866678999999997-7986999
Q gi|255764477|r 4 IGLTGSIGTGKTTVAEFLKK-EKIPVIS 30 (199)
Q Consensus 4 IgitG~igSGKStv~~~l~~-~G~~v~~ 30 (199)
|=++|-.|+||||+|-.+++ ++=||+=
T Consensus 24 vHl~GPaG~GKT~LA~hvA~~r~RPV~l 51 (265)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRPVVL 51 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 6744788855689999999736896899
No 498
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=90.58 E-value=0.2 Score=29.44 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=15.2
Q ss_pred EEEEEECCCCCCHHHHH
Q ss_conf 59998888666789999
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVA 18 (199)
Q Consensus 2 ~iIgitG~igSGKStv~ 18 (199)
.++.|||-.|||||+.|
T Consensus 27 klvViTGvSGSGKSSLA 43 (944)
T PRK00349 27 KLVVITGLSGSGKSSLA 43 (944)
T ss_pred CEEEEECCCCCCHHHHH
T ss_conf 88999889888689999
No 499
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=90.55 E-value=0.15 Score=30.15 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=12.0
Q ss_pred EEECCCCCCHHHHHHHHHHC-CCEEEE
Q ss_conf 98888666789999999977-986999
Q gi|255764477|r 5 GLTGSIGTGKTTVAEFLKKE-KIPVIS 30 (199)
Q Consensus 5 gitG~igSGKStv~~~l~~~-G~~v~~ 30 (199)
||=|-.|+||||+.+.|+++ ---||-
T Consensus 857 ALMG~SGAGKTTLLn~La~R~t~GvIT 883 (1466)
T TIGR00956 857 ALMGASGAGKTTLLNVLAERVTTGVIT 883 (1466)
T ss_pred ECCCCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 515788763578886443304321770
No 500
>PRK09601 translation-associated GTPase; Reviewed
Probab=90.55 E-value=0.29 Score=28.34 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9599988886667899999999779
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKKEK 25 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~~G 25 (199)
+|.+||.|.+-+||||+=+.|....
T Consensus 2 ~mkiGivGlPnvGKSTlFnalT~~~ 26 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8248887799998899999996799
Done!