HHsearch alignment for GI: 255764477 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=92.54 E-value=0.098 Score=31.32 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEECCCCCCHHHHHHHHHH-CCCE--EEEH
Q ss_conf 9888866678999999997-7986--9990
Q gi|255764477|r 5 GLTGSIGTGKTTVAEFLKK-EKIP--VISS 31 (199)
Q Consensus 5 gitG~igSGKStv~~~l~~-~G~~--v~~a 31 (199)
T Consensus 54 lf~GPPG~GKTTlAriiAk~~~~~~~~~s~ 83 (234)
T pfam05496 54 LLYGPPGLGKTTLANIIANEMGVNIRITSG 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 887899998889999999840875376142