RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] (199 letters) >gnl|CDD|178848 PRK00081, coaE, dephospho-CoA kinase; Reviewed. Length = 197 Score = 186 bits (475), Expect = 4e-48 Identities = 70/198 (35%), Positives = 113/198 (57%), Gaps = 6/198 (3%) Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLY--HYEAVDIIKKTFPRSI--Q 56 MLIIGLTG IG+GK+TVA + PVI +D I ++ A+ I + F I Sbjct: 2 MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDA 61 Query: 57 NNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK 116 + ++++A+L ++ P + LE I+HP++R + L + V D PLLFE Sbjct: 62 DGELDRAKLRELVFSDPEARKKLEAILHPLIREEILEQLQEA--ESSPYVVLDIPLLFEN 119 Query: 117 RKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGT 176 E L D V+VV ETQ ER+++R +EE I++ QM ++K++RAD VI+ G Sbjct: 120 GLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIASQMPREEKLARADDVIDNNGD 179 Query: 177 IEAIEKETQKMLKYILKI 194 +E + K+ +++L+ +LK+ Sbjct: 180 LEELRKQVERLLQELLKL 197 >gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. Length = 188 Score = 111 bits (280), Expect = 1e-25 Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 6/189 (3%) Query: 3 IIGLTGSIGTGKTTVAEFLK-KEKIPVISSDDIVDKLYH--YEAVDIIKKTFPRSI--QN 57 IIGLTG IG+GK+TVA +L K PVI +D I ++ A + I F I ++ Sbjct: 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNED 60 Query: 58 NKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKR 117 ++++ L + P +L+ L ++HP++R KK+L + V D PLLFE + Sbjct: 61 GELDRKALGERVFNDPEELKWLNNLLHPLIREWMKKLLAQFQSKLAY-VLLDVPLLFENK 119 Query: 118 KEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGTI 177 L D V+VV S + Q ER++ R TEE L+ QM+ +++++RAD VI+ T+ Sbjct: 120 LRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLASQMDIEERLARADDVIDNSATL 179 Query: 178 EAIEKETQK 186 + K+ ++ Sbjct: 180 ADLVKQLEE 188 >gnl|CDD|184807 PRK14730, coaE, dephospho-CoA kinase; Provisional. Length = 195 Score = 109 bits (274), Expect = 6e-25 Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 20/199 (10%) Query: 3 IIGLTGSIGTGKTTVAEFLKKEK-IPVISSDDIVDKLYHYEAV-------DIIKKTFPRS 54 IGLTG I +GK+TV +L ++K IP++ +D +Y EA+ I + + Sbjct: 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD-----IYAREALAPGSPILKAILQRYGNK 57 Query: 55 IQ---NNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLS-CRGEKIVFFDT 110 I +++N+ L I+ P + LE ++HP VR ++ +L+ + IV Sbjct: 58 IIDPDGSELNRKALGEIIFNDPEERRWLENLIHPYVR---ERFEEELAQLKSNPIVVLVI 114 Query: 111 PLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYV 170 PLLFE + L + VV CS E Q +R++ R TEE ++ Q ++K+ AD V Sbjct: 115 PLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARINAQWPLEEKVKLADVV 174 Query: 171 INTEGTIEAIEKETQKMLK 189 ++ G +E + ++ ++LK Sbjct: 175 LDNSGDLEKLYQQVDQLLK 193 >gnl|CDD|178042 PLN02422, PLN02422, dephospho-CoA kinase. Length = 232 Score = 107 bits (268), Expect = 3e-24 Identities = 63/203 (31%), Positives = 108/203 (53%), Gaps = 20/203 (9%) Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKK----------T 50 M ++GLTG I +GK+TV+ K IPV+ +D + A D++KK Sbjct: 1 MRVVGLTGGIASGKSTVSNLFKSSGIPVVDADKV--------ARDVLKKGSGGWKRVVAA 52 Query: 51 FPRSI--QNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFF 108 F I + +V++ +L I+ P+K ++L +++ P + + L +G K++ Sbjct: 53 FGEDILLPDGEVDREKLGQIVFSDPSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVL 112 Query: 109 DTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRAD 168 D PLLFE + + VVVV ETQ ER+++R +EE ++ QM K S+AD Sbjct: 113 DIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNRINAQMPLDWKRSKAD 172 Query: 169 YVINTEGTIEAIEKETQKMLKYI 191 VI+ G++E ++++ QK+L+ I Sbjct: 173 IVIDNSGSLEDLKQQFQKVLEKI 195 >gnl|CDD|185630 PTZ00451, PTZ00451, dephospho-CoA kinase; Provisional. Length = 244 Score = 94.9 bits (236), Expect = 1e-20 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 15/189 (7%) Query: 1 MLIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKLYHYEA--VDIIKKTFPRSI-- 55 M++IGLTG I GK+TV+ L++E I VI +D +V +L I +P + Sbjct: 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHP 60 Query: 56 QNNKVNKARLLGILQKSPAKLEILEKIVHP---------MVRMHEKKILHDLSCRGEKIV 106 + ++N+A L I+ L +I++P + + + + IV Sbjct: 61 ETGELNRAELGKIIFSDAQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIV 120 Query: 107 FFDTPLLFE-KRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKIS 165 D P LFE K Y A VVV+CS E Q ER+ R ++E L + QM ++K Sbjct: 121 VLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGFSKEEALQRIGSQMPLEEKRR 180 Query: 166 RADYVINTE 174 ADY+I + Sbjct: 181 LADYIIEND 189 >gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional. Length = 208 Score = 87.4 bits (217), Expect = 2e-18 Identities = 53/199 (26%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDI--IKKTFPRSIQNNK 59 ++G+TG IG+GK+TV FL + + +D + +L + I IKK F + + + Sbjct: 6 FLVGVTGGIGSGKSTVCRFLAEMGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKD 65 Query: 60 ------VNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLL 113 +++ R+ ++ P KL L +++HP V ++ + + RG++I+ + +L Sbjct: 66 ASGKLLLDRKRIAQVVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAIL 125 Query: 114 FEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINT 173 FE + D +VVV E + ER + R + E ++ Q ++ I RADYVI Sbjct: 126 FESGGDAGLDFIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKLIERADYVIYN 185 Query: 174 EGTIEAIEKETQKMLKYIL 192 GT++ ++ +T+++ + +L Sbjct: 186 NGTLDELKAQTEQLYQVLL 204 >gnl|CDD|184808 PRK14732, coaE, dephospho-CoA kinase; Provisional. Length = 196 Score = 85.4 bits (211), Expect = 1e-17 Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 10/197 (5%) Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISSDDI------VDKLYHYEAVDIIKKTFPRSIQ 56 +IG+TG IG GK+T + L++ IS+D + D E V ++ + Sbjct: 1 LIGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDE-- 58 Query: 57 NNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK 116 N K N+ ++ I+ KL+ L +++HP+VR +KIL + G K+V ++ PLLFE Sbjct: 59 NGKPNRKKISEIVFNDEEKLKALNELIHPLVRKDFQKILQT-TAEG-KLVIWEVPLLFET 116 Query: 117 RKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGT 176 L DA V V E R +SR +E+ L ++ Q+ +K+ RADY++ +G Sbjct: 117 DAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIASQLPITEKLKRADYIVRNDGN 176 Query: 177 IEAIEKETQKMLKYILK 193 E +++E + + +LK Sbjct: 177 REGLKEECKILYSTLLK 193 >gnl|CDD|173196 PRK14734, coaE, dephospho-CoA kinase; Provisional. Length = 200 Score = 82.2 bits (203), Expect = 8e-17 Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%) Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSD----DIVDKLYHYEAVDIIKKTFPRSIQ 56 ML IGLTG IG+GK+TVA+ L E ++ +D DIV+ A+ + + F I Sbjct: 1 MLRIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEP--GQPALAELAEAFGDDIL 58 Query: 57 N--NKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLF 114 N +++A L SP + +L I HP + + ++ +G K+ +D PLL Sbjct: 59 NPDGTLDRAGLAAKAFASPEQTALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLV 118 Query: 115 EKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTE 174 EK + D VVVV E + R++ ++ E++ ++ Q+ + ++ AD V++ Sbjct: 119 EKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRRIAAQIPDDVRLKAADIVVDNN 178 Query: 175 GTIEAIEKETQKMLKYIL 192 GT E + + ++ IL Sbjct: 179 GTREQLLAQVDGLIAEIL 196 >gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional. Length = 395 Score = 59.6 bits (145), Expect = 5e-10 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 16/192 (8%) Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVD-------IIKKTFPR 53 ML IGLTG IG GK+TVA L + V+ +D + E V+ + F Sbjct: 1 MLRIGLTGGIGAGKSTVAARLAELGAVVVDADVLAR-----EVVEPGTEGLAALVAAFGD 55 Query: 54 SI--QNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTP 111 I + +++ L +L IVHP+V +++ + + +V D P Sbjct: 56 DILLADGALDRPALAAKAFADDEARAVLNGIVHPLVGARRAELIA--AAPEDAVVVEDIP 113 Query: 112 LLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVI 171 LL E LF VVVV E + R++ ++ E + ++ Q +++ + + AD + Sbjct: 114 LLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAAQASDEQRRAVADVWL 173 Query: 172 NTEGTIEAIEKE 183 + GT + + + Sbjct: 174 DNSGTPDELVEA 185 >gnl|CDD|173195 PRK14733, coaE, dephospho-CoA kinase; Provisional. Length = 204 Score = 55.0 bits (132), Expect = 1e-08 Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 9/186 (4%) Query: 4 IGLTGSIGTGKTTVAEFLK-KEKIPVISSDDIVDKLYHYEAV--DIIKKTFPRSIQNNKV 60 IG+TG I +GK+T LK K + V+ +D I ++ +V I +K + N ++ Sbjct: 9 IGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQI 68 Query: 61 NKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLL--FEKRK 118 N+A L I+ +S + LE +HP++ KK + + + D PLL + R Sbjct: 69 NRAMLRAIITESKEAKKWLEDYLHPVINKEIKKQVKE---SDTVMTIVDIPLLGPYNFRH 125 Query: 119 EYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVI-NTEGTI 177 V+V+ ET+ R++ R + + ++ Q+++K++ AD+VI NTE T Sbjct: 126 YDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAFINLQISDKEREKIADFVIDNTELTD 185 Query: 178 EAIEKE 183 + +E + Sbjct: 186 QELESK 191 >gnl|CDD|179240 PRK01184, PRK01184, hypothetical protein; Provisional. Length = 184 Score = 34.9 bits (81), Expect = 0.013 Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 50/214 (23%) Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKV 60 M IIG+ G G+GK ++ ++ IPV+ D++ + ++ K+ + +N Sbjct: 1 MKIIGVVGMPGSGKGEFSKIAREMGIPVVVMGDVIRE-------EVKKRGLEPTDENIGK 53 Query: 61 NKARL---LGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRG-EKIVFFDTPLLFEK 116 L LG + AK + P +R +++ RG ++ +F Sbjct: 54 VAIDLRKELG--MDAVAKRTV------PKIREKGDEVVVIDGVRGDAEVEYF-------- 97 Query: 117 RKEYLFDAVVV-VTCSFETQRERVLSRKKH----TEENFLFILSKQMNEKDK-------- 163 RKE+ D +++ + E + ER+ R + + E E+D+ Sbjct: 98 RKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELE--------ERDERELSWGIG 149 Query: 164 --ISRADYVINTEGTIEAIEKETQKMLKYILKIN 195 I+ ADY+I + T+E +K+L+ IL+ Sbjct: 150 EVIALADYMIVNDSTLEEFRARVRKLLERILRSR 183 >gnl|CDD|161782 TIGR00235, udk, uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below. Length = 207 Score = 34.3 bits (79), Expect = 0.020 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 3 IIGLTGSIGTGKTTVA----EFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTF--PRSIQ 56 IIG+ G G+GKTTVA E L K +I +IS D+ H E + K F P + Sbjct: 8 IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFD 67 Query: 57 NN 58 N+ Sbjct: 68 ND 69 >gnl|CDD|169400 PRK08356, PRK08356, hypothetical protein; Provisional. Length = 195 Score = 33.6 bits (77), Expect = 0.035 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVIS-SDDIVDKLYH 40 +I+G+ G I GKTTVA+F +++ +S SD ++D L H Sbjct: 6 MIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSDPLIDLLTH 45 >gnl|CDD|180114 PRK05480, PRK05480, uridine/cytidine kinase; Provisional. Length = 209 Score = 32.8 bits (76), Expect = 0.052 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Query: 1 MLIIGLTGSIGTGKTTVA----EFLKKEKIPVISSD 32 +IIG+ G G+GKTTVA E L E I VI D Sbjct: 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 >gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed. Length = 229 Score = 32.6 bits (75), Expect = 0.070 Identities = 11/19 (57%), Positives = 15/19 (78%) Query: 3 IIGLTGSIGTGKTTVAEFL 21 I+G+ G G GK+T+AEFL Sbjct: 35 IVGIAGPPGAGKSTLAEFL 53 >gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional. Length = 180 Score = 30.2 bits (69), Expect = 0.35 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Query: 2 LIIGLTGSIGTGKTTVAEFL-KKEKIPVISSDDI 34 +II ++G G+GKTTVA L +K + +S+ +I Sbjct: 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEI 34 >gnl|CDD|162224 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. Length = 417 Score = 29.9 bits (68), Expect = 0.47 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%) Query: 3 IIGLTGSIGTGKTTVAEFLK 22 +IG+TGS +GKTT E L Sbjct: 76 VIGITGS--SGKTTTKEMLA 93 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 29.7 bits (66), Expect = 0.60 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 3 IIGLTGSIGTGKTT----VAEFLKKEKIPV--ISSDDIVDKLYHYEAVDIIKKTFPRSIQ 56 +I + G G+GKTT +A L V I +DI++++ + I+ Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63 Query: 57 NNKVNKAR 64 ++ A Sbjct: 64 ELRLRLAL 71 >gnl|CDD|140006 PRK13949, PRK13949, shikimate kinase; Provisional. Length = 169 Score = 28.9 bits (65), Expect = 0.78 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 1 MLIIGLTGSIGTGKTTVA-EFLKKEKIPVISSDDIVDKLYHYEAVDI 46 M I L G +G GKTT+ ++ + I D ++ +H DI Sbjct: 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDI 47 >gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed. Length = 215 Score = 29.0 bits (66), Expect = 0.81 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 1 MLIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDI 34 M +I L G G GK T A+F+ ++ IP IS+ D+ Sbjct: 1 MRLI-LLGPPGAGKGTQAKFIAEKYGIPHISTGDM 34 >gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. Length = 337 Score = 28.7 bits (64), Expect = 1.1 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Query: 123 DAVVVVTCSF--ETQRERVLSRKKHTEENFLFILSKQMNEKD-----KISRADYVINTEG 175 D V+ + S E R ++L ++T E L + + E D + + +Y + EG Sbjct: 216 DRVIGIDASATPEQTRAQILRIARNTAE--KIGLERDITEDDVVLDTRFAYPEYGVPNEG 273 Query: 176 TIEAIE 181 T+EAI Sbjct: 274 TLEAIR 279 >gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional. Length = 327 Score = 28.4 bits (64), Expect = 1.2 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 9/42 (21%) Query: 3 IIGLTGSIGTGKTT----VAEFLKKEKIPVISSDDIVDKLYH 40 ++G+ G G GKTT +A+ L +E + VI +DD YH Sbjct: 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD-----YH 46 >gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional. Length = 180 Score = 28.5 bits (64), Expect = 1.3 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 2 LIIGLTGSIGTGKTTVAEFL-KKEKIPVISSDDIVDKLYHYEAVD 45 +II +TG+ G GKTTV++ L +K + + K E D Sbjct: 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKD 45 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 28.2 bits (63), Expect = 1.3 Identities = 9/25 (36%), Positives = 16/25 (64%) Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIP 27 IG+ G G+GK+T+ + L++ P Sbjct: 485 FIGIVGPSGSGKSTLTKLLQRLYTP 509 >gnl|CDD|131926 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. Length = 284 Score = 28.3 bits (63), Expect = 1.4 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 10/44 (22%) Query: 2 LIIGLTGSIGTGKTTVAE----------FLKKEKIPVISSDDIV 35 L + TG+ GTGKTTVA +++K + ++ DD+V Sbjct: 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 >gnl|CDD|178894 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional. Length = 460 Score = 27.8 bits (63), Expect = 1.8 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 4/23 (17%) Query: 1 MLIIGLTGSIGT-GKTTVAEFLK 22 + +IG+TG T GKTT A L Sbjct: 95 LKLIGVTG---TNGKTTTAYLLA 114 >gnl|CDD|169554 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated. Length = 709 Score = 27.8 bits (61), Expect = 1.9 Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 6 LTGSIGTGKTTVAEFLKK 23 LTG+ G GKTT+A L K Sbjct: 43 LTGTRGVGKTTIARILAK 60 >gnl|CDD|184412 PRK13947, PRK13947, shikimate kinase; Provisional. Length = 171 Score = 27.7 bits (62), Expect = 2.0 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 1 MLIIGLTGSIGTGKTTVAEFL-KKEKIPVISSDDIVDKLYHYEAVDIIKK---TFPRSIQ 56 M I L G +GTGKTTV + + I +D ++K+ +I +K RS + Sbjct: 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEE 60 Query: 57 NNKVNKA 63 V K Sbjct: 61 KLLVKKL 67 >gnl|CDD|149557 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes. Length = 246 Score = 27.5 bits (62), Expect = 2.2 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 23/126 (18%) Query: 7 TGSIGTGKT--TVAEFLKKEKIPV------ISSDDIVDKLYHYEAVD-IIKKTFPRS--I 55 TG +G+ + VAE L K +PV ++ D L +A++ + ++ P + I Sbjct: 66 TGMLGSAEIIEAVAEKLDKYGVPVVLDPVMVAKSG--DSLLDPDAIEALREELLPLATLI 123 Query: 56 QNNKVNKARLLGILQKSPAKLEILEKIVHPM----VRM------HEKKILHDLSCRGEKI 105 N L GI K+ ++ K + + V + ++ ++ D+ G Sbjct: 124 TPNLPEAEALTGIKIKTLEDMKEAAKKLLALGAKAVLIKGGHLEGDEAVVVDVLYDGGGF 183 Query: 106 VFFDTP 111 F+ P Sbjct: 184 FTFEAP 189 >gnl|CDD|169051 PRK07667, PRK07667, uridine kinase; Provisional. Length = 193 Score = 27.4 bits (61), Expect = 2.3 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 45/172 (26%) Query: 2 LIIGLTGSIGTGKTTVA----EFLKKEKIPVIS---SDDIV--DKLYH------YE---- 42 I+G+ G +GKTT E +K+E IP D IV +K YH YE Sbjct: 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYL 77 Query: 43 --AVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSC 100 ++ +++ F R +QN KL + H E K + + Sbjct: 78 QWDIEWLRQKFFRKLQNE---------------TKLTL--PFYHDETDTCEMKKVQ-IPI 119 Query: 101 RGEKIVFFDTPLLFEKRKEY--LFDAVVVVTCSFETQRERVLSRKKHTEENF 150 G ++ +F +RKE+ F +V + C ET+ R + F Sbjct: 120 VGVIVI----EGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQKNLSKF 167 >gnl|CDD|179218 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase; Validated. Length = 451 Score = 27.4 bits (62), Expect = 2.5 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%) Query: 2 LIIGLTGSIGTGKTTVA 18 L+I S G+GKTTV Sbjct: 6 LVIAAPAS-GSGKTTVT 21 >gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171 Score = 27.4 bits (61), Expect = 2.6 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 2 LIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKLYHYEAVDII 47 +II ++G G+GKTTVA+ L ++ + +IS+ DI +L +D+I Sbjct: 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLI 47 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 27.3 bits (61), Expect = 2.6 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 3 IIGLTGSIGTGKTTVAEFL 21 I+GL G +G G+T +AE L Sbjct: 291 ILGLAGVVGAGRTELAETL 309 >gnl|CDD|178900 PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional. Length = 342 Score = 27.3 bits (62), Expect = 2.8 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Query: 57 NN-KVNKARLLGILQKSPAKLEIL 79 N+ +V ARL G +++ K+E+L Sbjct: 59 NDTRVIPARLFGRKKETGGKIEVL 82 >gnl|CDD|184915 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional. Length = 618 Score = 27.4 bits (61), Expect = 2.8 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 7 TGSIGTGKTTVAEFLKK 23 TG+ G GKTTV+ L K Sbjct: 44 TGTRGVGKTTVSRILAK 60 >gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. Length = 210 Score = 26.8 bits (60), Expect = 3.5 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Query: 11 GTGKTTVAEFLKKE-KIPVISSDDI 34 G+GK T A+ + ++ +P IS+ D+ Sbjct: 9 GSGKGTQAKRIAEKYGLPHISTGDL 33 >gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. Length = 199 Score = 26.8 bits (59), Expect = 4.0 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 5/37 (13%) Query: 1 MLIIGLTGSIGTGKTTVAEFL-----KKEKIPVISSD 32 L IG+ G +G+GKT + E L +K ++ VI++D Sbjct: 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITND 37 >gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional. Length = 182 Score = 26.6 bits (59), Expect = 4.1 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 3 IIGLTGSIGTGKTTVAEFLKKE 24 II + G GKTT+ E L + Sbjct: 5 IITIAAVSGGGKTTLTERLTHK 26 >gnl|CDD|184933 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional. Length = 527 Score = 26.6 bits (59), Expect = 4.2 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 7 TGSIGTGKTTVAEFLKK 23 TG+ G GKTT+A L K Sbjct: 44 TGTRGVGKTTLARILAK 60 >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional. Length = 754 Score = 26.6 bits (58), Expect = 4.7 Identities = 12/48 (25%), Positives = 27/48 (56%) Query: 44 VDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHE 91 + ++ +T P +I V++ L + + PA L+I++ + +VR+ E Sbjct: 358 ITVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPE 405 >gnl|CDD|114590 pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase. Length = 504 Score = 26.6 bits (59), Expect = 4.9 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%) Query: 5 GL-TGSIGTGKT----TVAEFLKKEKIPVISSD 32 GL G+ GTGKT +AE +PV +D Sbjct: 24 GLIAGATGTGKTVTLQVLAESFSDAGVPVFLAD 56 >gnl|CDD|179530 PRK03059, PRK03059, PII uridylyl-transferase; Provisional. Length = 856 Score = 26.4 bits (59), Expect = 5.0 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 13/58 (22%) Query: 38 LYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKIL 95 LY+ A D++ F R + VN+A + ILQ+ P I H + M++ +L Sbjct: 373 LYN--ARDVMNAAFRR----DPVNRALFMQILQQ-P------RGITHALRLMNQTSVL 417 >gnl|CDD|180082 PRK05439, PRK05439, pantothenate kinase; Provisional. Length = 311 Score = 26.3 bits (59), Expect = 5.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 3 IIGLTGSIGTGKTTVAEFLKK 23 IIG+ GS+ GK+T A L+ Sbjct: 88 IIGIAGSVAVGKSTTARLLQA 108 >gnl|CDD|129645 TIGR00554, panK_bact, pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. Length = 290 Score = 26.4 bits (58), Expect = 5.5 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 3 IIGLTGSIGTGKTTVAEFLKK--------EKIPVISSDDIVDKLYHYEAVDII-KKTFPR 53 II + GS+ GK+T A L+ K+ +I++D + + +++ KK FP Sbjct: 64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPE 123 Query: 54 S 54 S Sbjct: 124 S 124 >gnl|CDD|177411 PHA02582, 10, baseplate wedge subunit and tail pin; Provisional. Length = 604 Score = 26.2 bits (58), Expect = 5.8 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Query: 11 GTGKTTVAEFLKKEKIPVISSDDIV 35 GTG +T LKKE IP + SDD V Sbjct: 520 GTGGSTSVT-LKKENIPELQSDDKV 543 >gnl|CDD|149480 pfam08433, KTI12, Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity. Length = 266 Score = 26.1 bits (58), Expect = 6.0 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 7/39 (17%) Query: 2 LIIGLTGSIGTGKTTVAEFLKKE------KIPVISSDDI 34 LII LTG +GK+T A+ L K + VIS + + Sbjct: 1 LII-LTGLPSSGKSTRAKELAKYLEEKGYDVIVISDESL 38 >gnl|CDD|185352 PRK15455, PRK15455, PrkA family serine protein kinase; Provisional. Length = 644 Score = 26.1 bits (58), Expect = 6.1 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%) Query: 3 IIGLTGSIGTGKTTVAEFLKK--EKIPV 28 I+ L G +G GK+++AE LK E++P+ Sbjct: 105 ILYLLGPVGGGKSSLAERLKSLMERVPI 132 >gnl|CDD|150993 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export. Length = 386 Score = 26.0 bits (58), Expect = 6.3 Identities = 7/14 (50%), Positives = 9/14 (64%) Query: 4 IGLTGSIGTGKTTV 17 I + G+ GTGKT Sbjct: 18 ILIVGTTGTGKTQA 31 >gnl|CDD|183386 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional. Length = 822 Score = 26.1 bits (58), Expect = 6.3 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 2/19 (10%) Query: 3 IIGLTGSIGTGKTTVAEFL 21 +IG+TGS GKT V E+L Sbjct: 109 VIGITGS--NGKTIVKEWL 125 >gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed. Length = 687 Score = 26.1 bits (58), Expect = 6.9 Identities = 8/16 (50%), Positives = 10/16 (62%) Query: 4 IGLTGSIGTGKTTVAE 19 IG+ I GKTT+ E Sbjct: 11 IGILAHIDAGKTTLTE 26 >gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143 Score = 26.1 bits (58), Expect = 7.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKI 26 M I L G G GKTT+ + L E++ Sbjct: 1 MKKIMLIGRSGCGKTTLTQALNGEEL 26 >gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. Length = 361 Score = 25.7 bits (57), Expect = 7.5 Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 3 IIGLTGSIGTGKTTVAEFLKK 23 I+ L G +G GK+++ E LK+ Sbjct: 80 ILYLLGPVGGGKSSLVECLKR 100 >gnl|CDD|184914 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional. Length = 585 Score = 25.9 bits (57), Expect = 7.9 Identities = 9/17 (52%), Positives = 10/17 (58%) Query: 7 TGSIGTGKTTVAEFLKK 23 TG G GKT+ A L K Sbjct: 44 TGPRGVGKTSTARILAK 60 >gnl|CDD|185419 PTZ00056, PTZ00056, glutathione peroxidase; Provisional. Length = 199 Score = 25.6 bits (56), Expect = 8.0 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 14/91 (15%) Query: 20 FLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79 F KK + S D++ +Y Y + T P S NKV ++ S +K + Sbjct: 4 FFKKITV---SKDELRKSIYDYTVKTLEGTTVPMSSLKNKVL------MITNSASKCGLT 54 Query: 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFDT 110 +K V M R+H + G +I+ F T Sbjct: 55 KKHVDQMNRLHSV-----FNPLGLEILAFPT 80 >gnl|CDD|184081 PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional. Length = 201 Score = 25.7 bits (57), Expect = 8.3 Identities = 6/16 (37%), Positives = 13/16 (81%) Query: 17 VAEFLKKEKIPVISSD 32 V ++L+ E+IP+++ D Sbjct: 132 VRDYLQTERIPIVAED 147 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 25.5 bits (56), Expect = 8.4 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Query: 4 IGLTGSIGTGKTTVAEFLKKEKIPVISSD 32 +GL G G GK+T+ LK E IS+D Sbjct: 30 VGLVGKNGCGKSTLLALLKNE----ISAD 54 >gnl|CDD|168091 PRK05541, PRK05541, adenylylsulfate kinase; Provisional. Length = 176 Score = 25.8 bits (57), Expect = 8.6 Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 2 LIIGLTGSIGTGKTTVAEFLKK 23 +I +TG G+GKTT+A+ L + Sbjct: 8 YVIWITGLAGSGKTTIAKALYE 29 >gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed. Length = 413 Score = 25.4 bits (57), Expect = 9.4 Identities = 7/14 (50%), Positives = 9/14 (64%) Query: 11 GTGKTTVAEFLKKE 24 GTGKTT+A + Sbjct: 46 GTGKTTLARIIAGA 59 >gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional. Length = 995 Score = 25.4 bits (56), Expect = 9.7 Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 13 GKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDI 46 GK + F+ KIP+I+ D++VD + AV I Sbjct: 285 GKELIHPFIPDRKIPIIADDELVDMEFGTGAVKI 318 >gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). Length = 262 Score = 25.5 bits (56), Expect = 9.7 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Query: 4 IGLTGSIGTGKTTVAEFL-KKEKIPVI 29 + L G GTGKTT+A + +K PV+ Sbjct: 24 VHLRGPAGTGKTTLAMHVARKRDRPVM 50 >gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional. Length = 175 Score = 25.4 bits (56), Expect = 9.8 Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 2 LIIGLTGSIGTGKTTVAEFLKKE 24 + + TG G GKTT+A L ++ Sbjct: 5 VTVWFTGLSGAGKTTIARALAEK 27 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.136 0.371 Gapped Lambda K H 0.267 0.0642 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,201,262 Number of extensions: 204188 Number of successful extensions: 899 Number of sequences better than 10.0: 1 Number of HSP's gapped: 875 Number of HSP's successfully gapped: 128 Length of query: 199 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 110 Effective length of database: 4,071,361 Effective search space: 447849710 Effective search space used: 447849710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.1 bits)