RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase
[Candidatus Liberibacter asiaticus str. psy62]
(199 letters)
>gnl|CDD|178848 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 197
Score = 186 bits (475), Expect = 4e-48
Identities = 70/198 (35%), Positives = 113/198 (57%), Gaps = 6/198 (3%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLY--HYEAVDIIKKTFPRSI--Q 56
MLIIGLTG IG+GK+TVA + PVI +D I ++ A+ I + F I
Sbjct: 2 MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDA 61
Query: 57 NNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK 116
+ ++++A+L ++ P + LE I+HP++R + L + V D PLLFE
Sbjct: 62 DGELDRAKLRELVFSDPEARKKLEAILHPLIREEILEQLQEA--ESSPYVVLDIPLLFEN 119
Query: 117 RKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGT 176
E L D V+VV ETQ ER+++R +EE I++ QM ++K++RAD VI+ G
Sbjct: 120 GLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIASQMPREEKLARADDVIDNNGD 179
Query: 177 IEAIEKETQKMLKYILKI 194
+E + K+ +++L+ +LK+
Sbjct: 180 LEELRKQVERLLQELLKL 197
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases.
Length = 188
Score = 111 bits (280), Expect = 1e-25
Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 6/189 (3%)
Query: 3 IIGLTGSIGTGKTTVAEFLK-KEKIPVISSDDIVDKLYH--YEAVDIIKKTFPRSI--QN 57
IIGLTG IG+GK+TVA +L K PVI +D I ++ A + I F I ++
Sbjct: 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNED 60
Query: 58 NKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKR 117
++++ L + P +L+ L ++HP++R KK+L + V D PLLFE +
Sbjct: 61 GELDRKALGERVFNDPEELKWLNNLLHPLIREWMKKLLAQFQSKLAY-VLLDVPLLFENK 119
Query: 118 KEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGTI 177
L D V+VV S + Q ER++ R TEE L+ QM+ +++++RAD VI+ T+
Sbjct: 120 LRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLASQMDIEERLARADDVIDNSATL 179
Query: 178 EAIEKETQK 186
+ K+ ++
Sbjct: 180 ADLVKQLEE 188
>gnl|CDD|184807 PRK14730, coaE, dephospho-CoA kinase; Provisional.
Length = 195
Score = 109 bits (274), Expect = 6e-25
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 20/199 (10%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKEK-IPVISSDDIVDKLYHYEAV-------DIIKKTFPRS 54
IGLTG I +GK+TV +L ++K IP++ +D +Y EA+ I + +
Sbjct: 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD-----IYAREALAPGSPILKAILQRYGNK 57
Query: 55 IQ---NNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLS-CRGEKIVFFDT 110
I +++N+ L I+ P + LE ++HP VR ++ +L+ + IV
Sbjct: 58 IIDPDGSELNRKALGEIIFNDPEERRWLENLIHPYVR---ERFEEELAQLKSNPIVVLVI 114
Query: 111 PLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYV 170
PLLFE + L + VV CS E Q +R++ R TEE ++ Q ++K+ AD V
Sbjct: 115 PLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARINAQWPLEEKVKLADVV 174
Query: 171 INTEGTIEAIEKETQKMLK 189
++ G +E + ++ ++LK
Sbjct: 175 LDNSGDLEKLYQQVDQLLK 193
>gnl|CDD|178042 PLN02422, PLN02422, dephospho-CoA kinase.
Length = 232
Score = 107 bits (268), Expect = 3e-24
Identities = 63/203 (31%), Positives = 108/203 (53%), Gaps = 20/203 (9%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKK----------T 50
M ++GLTG I +GK+TV+ K IPV+ +D + A D++KK
Sbjct: 1 MRVVGLTGGIASGKSTVSNLFKSSGIPVVDADKV--------ARDVLKKGSGGWKRVVAA 52
Query: 51 FPRSI--QNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFF 108
F I + +V++ +L I+ P+K ++L +++ P + + L +G K++
Sbjct: 53 FGEDILLPDGEVDREKLGQIVFSDPSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVL 112
Query: 109 DTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRAD 168
D PLLFE + + VVVV ETQ ER+++R +EE ++ QM K S+AD
Sbjct: 113 DIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNRINAQMPLDWKRSKAD 172
Query: 169 YVINTEGTIEAIEKETQKMLKYI 191
VI+ G++E ++++ QK+L+ I
Sbjct: 173 IVIDNSGSLEDLKQQFQKVLEKI 195
>gnl|CDD|185630 PTZ00451, PTZ00451, dephospho-CoA kinase; Provisional.
Length = 244
Score = 94.9 bits (236), Expect = 1e-20
Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKLYHYEA--VDIIKKTFPRSI-- 55
M++IGLTG I GK+TV+ L++E I VI +D +V +L I +P +
Sbjct: 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHP 60
Query: 56 QNNKVNKARLLGILQKSPAKLEILEKIVHP---------MVRMHEKKILHDLSCRGEKIV 106
+ ++N+A L I+ L +I++P + + + + IV
Sbjct: 61 ETGELNRAELGKIIFSDAQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIV 120
Query: 107 FFDTPLLFE-KRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKIS 165
D P LFE K Y A VVV+CS E Q ER+ R ++E L + QM ++K
Sbjct: 121 VLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGFSKEEALQRIGSQMPLEEKRR 180
Query: 166 RADYVINTE 174
ADY+I +
Sbjct: 181 LADYIIEND 189
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 87.4 bits (217), Expect = 2e-18
Identities = 53/199 (26%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDI--IKKTFPRSIQNNK 59
++G+TG IG+GK+TV FL + + +D + +L + I IKK F + + +
Sbjct: 6 FLVGVTGGIGSGKSTVCRFLAEMGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKD 65
Query: 60 ------VNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLL 113
+++ R+ ++ P KL L +++HP V ++ + + RG++I+ + +L
Sbjct: 66 ASGKLLLDRKRIAQVVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAIL 125
Query: 114 FEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINT 173
FE + D +VVV E + ER + R + E ++ Q ++ I RADYVI
Sbjct: 126 FESGGDAGLDFIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKLIERADYVIYN 185
Query: 174 EGTIEAIEKETQKMLKYIL 192
GT++ ++ +T+++ + +L
Sbjct: 186 NGTLDELKAQTEQLYQVLL 204
>gnl|CDD|184808 PRK14732, coaE, dephospho-CoA kinase; Provisional.
Length = 196
Score = 85.4 bits (211), Expect = 1e-17
Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 10/197 (5%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISSDDI------VDKLYHYEAVDIIKKTFPRSIQ 56
+IG+TG IG GK+T + L++ IS+D + D E V ++ +
Sbjct: 1 LIGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDE-- 58
Query: 57 NNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEK 116
N K N+ ++ I+ KL+ L +++HP+VR +KIL + G K+V ++ PLLFE
Sbjct: 59 NGKPNRKKISEIVFNDEEKLKALNELIHPLVRKDFQKILQT-TAEG-KLVIWEVPLLFET 116
Query: 117 RKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGT 176
L DA V V E R +SR +E+ L ++ Q+ +K+ RADY++ +G
Sbjct: 117 DAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIASQLPITEKLKRADYIVRNDGN 176
Query: 177 IEAIEKETQKMLKYILK 193
E +++E + + +LK
Sbjct: 177 REGLKEECKILYSTLLK 193
>gnl|CDD|173196 PRK14734, coaE, dephospho-CoA kinase; Provisional.
Length = 200
Score = 82.2 bits (203), Expect = 8e-17
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSD----DIVDKLYHYEAVDIIKKTFPRSIQ 56
ML IGLTG IG+GK+TVA+ L E ++ +D DIV+ A+ + + F I
Sbjct: 1 MLRIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEP--GQPALAELAEAFGDDIL 58
Query: 57 N--NKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLF 114
N +++A L SP + +L I HP + + ++ +G K+ +D PLL
Sbjct: 59 NPDGTLDRAGLAAKAFASPEQTALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLV 118
Query: 115 EKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTE 174
EK + D VVVV E + R++ ++ E++ ++ Q+ + ++ AD V++
Sbjct: 119 EKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRRIAAQIPDDVRLKAADIVVDNN 178
Query: 175 GTIEAIEKETQKMLKYIL 192
GT E + + ++ IL
Sbjct: 179 GTREQLLAQVDGLIAEIL 196
>gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory
domain-containing protein; Provisional.
Length = 395
Score = 59.6 bits (145), Expect = 5e-10
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVD-------IIKKTFPR 53
ML IGLTG IG GK+TVA L + V+ +D + E V+ + F
Sbjct: 1 MLRIGLTGGIGAGKSTVAARLAELGAVVVDADVLAR-----EVVEPGTEGLAALVAAFGD 55
Query: 54 SI--QNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTP 111
I + +++ L +L IVHP+V +++ + + +V D P
Sbjct: 56 DILLADGALDRPALAAKAFADDEARAVLNGIVHPLVGARRAELIA--AAPEDAVVVEDIP 113
Query: 112 LLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVI 171
LL E LF VVVV E + R++ ++ E + ++ Q +++ + + AD +
Sbjct: 114 LLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAAQASDEQRRAVADVWL 173
Query: 172 NTEGTIEAIEKE 183
+ GT + + +
Sbjct: 174 DNSGTPDELVEA 185
>gnl|CDD|173195 PRK14733, coaE, dephospho-CoA kinase; Provisional.
Length = 204
Score = 55.0 bits (132), Expect = 1e-08
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 4 IGLTGSIGTGKTTVAEFLK-KEKIPVISSDDIVDKLYHYEAV--DIIKKTFPRSIQNNKV 60
IG+TG I +GK+T LK K + V+ +D I ++ +V I +K + N ++
Sbjct: 9 IGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQI 68
Query: 61 NKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLL--FEKRK 118
N+A L I+ +S + LE +HP++ KK + + + D PLL + R
Sbjct: 69 NRAMLRAIITESKEAKKWLEDYLHPVINKEIKKQVKE---SDTVMTIVDIPLLGPYNFRH 125
Query: 119 EYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVI-NTEGTI 177
V+V+ ET+ R++ R + + ++ Q+++K++ AD+VI NTE T
Sbjct: 126 YDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAFINLQISDKEREKIADFVIDNTELTD 185
Query: 178 EAIEKE 183
+ +E +
Sbjct: 186 QELESK 191
>gnl|CDD|179240 PRK01184, PRK01184, hypothetical protein; Provisional.
Length = 184
Score = 34.9 bits (81), Expect = 0.013
Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 50/214 (23%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKV 60
M IIG+ G G+GK ++ ++ IPV+ D++ + ++ K+ + +N
Sbjct: 1 MKIIGVVGMPGSGKGEFSKIAREMGIPVVVMGDVIRE-------EVKKRGLEPTDENIGK 53
Query: 61 NKARL---LGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRG-EKIVFFDTPLLFEK 116
L LG + AK + P +R +++ RG ++ +F
Sbjct: 54 VAIDLRKELG--MDAVAKRTV------PKIREKGDEVVVIDGVRGDAEVEYF-------- 97
Query: 117 RKEYLFDAVVV-VTCSFETQRERVLSRKKH----TEENFLFILSKQMNEKDK-------- 163
RKE+ D +++ + E + ER+ R + + E E+D+
Sbjct: 98 RKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELE--------ERDERELSWGIG 149
Query: 164 --ISRADYVINTEGTIEAIEKETQKMLKYILKIN 195
I+ ADY+I + T+E +K+L+ IL+
Sbjct: 150 EVIALADYMIVNDSTLEEFRARVRKLLERILRSR 183
>gnl|CDD|161782 TIGR00235, udk, uridine kinase. Model contains a number of
longer eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below.
Length = 207
Score = 34.3 bits (79), Expect = 0.020
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 3 IIGLTGSIGTGKTTVA----EFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTF--PRSIQ 56
IIG+ G G+GKTTVA E L K +I +IS D+ H E + K F P +
Sbjct: 8 IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFD 67
Query: 57 NN 58
N+
Sbjct: 68 ND 69
>gnl|CDD|169400 PRK08356, PRK08356, hypothetical protein; Provisional.
Length = 195
Score = 33.6 bits (77), Expect = 0.035
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVIS-SDDIVDKLYH 40
+I+G+ G I GKTTVA+F +++ +S SD ++D L H
Sbjct: 6 MIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSDPLIDLLTH 45
>gnl|CDD|180114 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 32.8 bits (76), Expect = 0.052
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 1 MLIIGLTGSIGTGKTTVA----EFLKKEKIPVISSD 32
+IIG+ G G+GKTTVA E L E I VI D
Sbjct: 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 32.6 bits (75), Expect = 0.070
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 3 IIGLTGSIGTGKTTVAEFL 21
I+G+ G G GK+T+AEFL
Sbjct: 35 IVGIAGPPGAGKSTLAEFL 53
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 30.2 bits (69), Expect = 0.35
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 2 LIIGLTGSIGTGKTTVAEFL-KKEKIPVISSDDI 34
+II ++G G+GKTTVA L +K + +S+ +I
Sbjct: 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEI 34
>gnl|CDD|162224 TIGR01143, murF,
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase. This family consists of the strictly bacterial
MurF gene of peptidoglycan biosynthesis. This enzyme is
almost always
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a
few species, MurE adds lysine rather than
diaminopimelate. This enzyme acts on the product from
MurE activity, and so is also subfamily rather than
equivalog. Staphylococcus aureus is an example of
species in this MurF protein would differ.
Length = 417
Score = 29.9 bits (68), Expect = 0.47
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 3 IIGLTGSIGTGKTTVAEFLK 22
+IG+TGS +GKTT E L
Sbjct: 76 VIGITGS--SGKTTTKEMLA 93
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 29.7 bits (66), Expect = 0.60
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 3 IIGLTGSIGTGKTT----VAEFLKKEKIPV--ISSDDIVDKLYHYEAVDIIKKTFPRSIQ 56
+I + G G+GKTT +A L V I +DI++++ + I+
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63
Query: 57 NNKVNKAR 64
++ A
Sbjct: 64 ELRLRLAL 71
>gnl|CDD|140006 PRK13949, PRK13949, shikimate kinase; Provisional.
Length = 169
Score = 28.9 bits (65), Expect = 0.78
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 1 MLIIGLTGSIGTGKTTVA-EFLKKEKIPVISSDDIVDKLYHYEAVDI 46
M I L G +G GKTT+ ++ + I D ++ +H DI
Sbjct: 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDI 47
>gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 29.0 bits (66), Expect = 0.81
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDI 34
M +I L G G GK T A+F+ ++ IP IS+ D+
Sbjct: 1 MRLI-LLGPPGAGKGTQAKFIAEKYGIPHISTGDM 34
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase.
This pyridoxal phosphate-dependent enzyme degrades
1-aminocyclopropane-1-carboxylate, which in plants is a
precursor of the ripening hormone ethylene, to ammonia
and alpha-ketoglutarate. This model includes all members
of this family for which function has been demonstrated
experimentally, but excludes a closely related family
often annotated as putative members of this family.
Length = 337
Score = 28.7 bits (64), Expect = 1.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 123 DAVVVVTCSF--ETQRERVLSRKKHTEENFLFILSKQMNEKD-----KISRADYVINTEG 175
D V+ + S E R ++L ++T E L + + E D + + +Y + EG
Sbjct: 216 DRVIGIDASATPEQTRAQILRIARNTAE--KIGLERDITEDDVVLDTRFAYPEYGVPNEG 273
Query: 176 TIEAIE 181
T+EAI
Sbjct: 274 TLEAIR 279
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 28.4 bits (64), Expect = 1.2
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 9/42 (21%)
Query: 3 IIGLTGSIGTGKTT----VAEFLKKEKIPVISSDDIVDKLYH 40
++G+ G G GKTT +A+ L +E + VI +DD YH
Sbjct: 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD-----YH 46
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 28.5 bits (64), Expect = 1.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 2 LIIGLTGSIGTGKTTVAEFL-KKEKIPVISSDDIVDKLYHYEAVD 45
+II +TG+ G GKTTV++ L +K + + K E D
Sbjct: 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKD 45
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 28.2 bits (63), Expect = 1.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIP 27
IG+ G G+GK+T+ + L++ P
Sbjct: 485 FIGIVGPSGSGKSTLTKLLQRLYTP 509
>gnl|CDD|131926 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX.
Proteins in this family are now designated CbbX. Some
previously were CfxQ (carbon fixation Q). Its gene is
often found immmediately downstream of the Rubisco large
and small chain genes, and it is suggested to be
necessary for Rubisco expression. CbbX has been shown to
be necessary for photoautotrophic growth. This protein
belongs to the larger family of pfam00004, ATPase family
Associated with various cellular Activities. Within that
larger family, members of this family are most closely
related to the stage V sporulation protein K, or SpoVK,
in endospore-forming bacteria such as Bacillus subtilis.
Length = 284
Score = 28.3 bits (63), Expect = 1.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Query: 2 LIIGLTGSIGTGKTTVAE----------FLKKEKIPVISSDDIV 35
L + TG+ GTGKTTVA +++K + ++ DD+V
Sbjct: 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102
>gnl|CDD|178894 PRK00139, murE,
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional.
Length = 460
Score = 27.8 bits (63), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 1 MLIIGLTGSIGT-GKTTVAEFLK 22
+ +IG+TG T GKTT A L
Sbjct: 95 LKLIGVTG---TNGKTTTAYLLA 114
>gnl|CDD|169554 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 27.8 bits (61), Expect = 1.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 6 LTGSIGTGKTTVAEFLKK 23
LTG+ G GKTT+A L K
Sbjct: 43 LTGTRGVGKTTIARILAK 60
>gnl|CDD|184412 PRK13947, PRK13947, shikimate kinase; Provisional.
Length = 171
Score = 27.7 bits (62), Expect = 2.0
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 1 MLIIGLTGSIGTGKTTVAEFL-KKEKIPVISSDDIVDKLYHYEAVDIIKK---TFPRSIQ 56
M I L G +GTGKTTV + + I +D ++K+ +I +K RS +
Sbjct: 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEE 60
Query: 57 NNKVNKA 63
V K
Sbjct: 61 KLLVKKL 67
>gnl|CDD|149557 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate
(TPP) synthesis pathway, TPP is an essential cofactor
for many enzymes.
Length = 246
Score = 27.5 bits (62), Expect = 2.2
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 23/126 (18%)
Query: 7 TGSIGTGKT--TVAEFLKKEKIPV------ISSDDIVDKLYHYEAVD-IIKKTFPRS--I 55
TG +G+ + VAE L K +PV ++ D L +A++ + ++ P + I
Sbjct: 66 TGMLGSAEIIEAVAEKLDKYGVPVVLDPVMVAKSG--DSLLDPDAIEALREELLPLATLI 123
Query: 56 QNNKVNKARLLGILQKSPAKLEILEKIVHPM----VRM------HEKKILHDLSCRGEKI 105
N L GI K+ ++ K + + V + ++ ++ D+ G
Sbjct: 124 TPNLPEAEALTGIKIKTLEDMKEAAKKLLALGAKAVLIKGGHLEGDEAVVVDVLYDGGGF 183
Query: 106 VFFDTP 111
F+ P
Sbjct: 184 FTFEAP 189
>gnl|CDD|169051 PRK07667, PRK07667, uridine kinase; Provisional.
Length = 193
Score = 27.4 bits (61), Expect = 2.3
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 45/172 (26%)
Query: 2 LIIGLTGSIGTGKTTVA----EFLKKEKIPVIS---SDDIV--DKLYH------YE---- 42
I+G+ G +GKTT E +K+E IP D IV +K YH YE
Sbjct: 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYL 77
Query: 43 --AVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSC 100
++ +++ F R +QN KL + H E K + +
Sbjct: 78 QWDIEWLRQKFFRKLQNE---------------TKLTL--PFYHDETDTCEMKKVQ-IPI 119
Query: 101 RGEKIVFFDTPLLFEKRKEY--LFDAVVVVTCSFETQRERVLSRKKHTEENF 150
G ++ +F +RKE+ F +V + C ET+ R + F
Sbjct: 120 VGVIVI----EGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQKNLSKF 167
>gnl|CDD|179218 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase;
Validated.
Length = 451
Score = 27.4 bits (62), Expect = 2.5
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 2 LIIGLTGSIGTGKTTVA 18
L+I S G+GKTTV
Sbjct: 6 LVIAAPAS-GSGKTTVT 21
>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 27.4 bits (61), Expect = 2.6
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 2 LIIGLTGSIGTGKTTVAEFLKKE-KIPVISSDDIVDKLYHYEAVDII 47
+II ++G G+GKTTVA+ L ++ + +IS+ DI +L +D+I
Sbjct: 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLI 47
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 27.3 bits (61), Expect = 2.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 3 IIGLTGSIGTGKTTVAEFL 21
I+GL G +G G+T +AE L
Sbjct: 291 ILGLAGVVGAGRTELAETL 309
>gnl|CDD|178900 PRK00147, queA, S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional.
Length = 342
Score = 27.3 bits (62), Expect = 2.8
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 57 NN-KVNKARLLGILQKSPAKLEIL 79
N+ +V ARL G +++ K+E+L
Sbjct: 59 NDTRVIPARLFGRKKETGGKIEVL 82
>gnl|CDD|184915 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 27.4 bits (61), Expect = 2.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 7 TGSIGTGKTTVAEFLKK 23
TG+ G GKTTV+ L K
Sbjct: 44 TGTRGVGKTTVSRILAK 60
>gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family
are known or believed to be adenylate kinase. However,
some members accept other nucleotide triphosphates as
donors, may be unable to use ATP, and may fail to
complement adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason.
Length = 210
Score = 26.8 bits (60), Expect = 3.5
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 11 GTGKTTVAEFLKKE-KIPVISSDDI 34
G+GK T A+ + ++ +P IS+ D+
Sbjct: 9 GSGKGTQAKRIAEKYGLPHISTGDL 33
>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model
represents UreG, a GTP hydrolase that acts in the
assembly of the nickel metallocenter of urease. It is
found only in urease-positive species, although some
urease-positive species (e.g. Bacillus subtilis) lack
this protein. A similar protein, hypB, is an accessory
protein for expression of hydrogenase, which also uses
nickel.
Length = 199
Score = 26.8 bits (59), Expect = 4.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 1 MLIIGLTGSIGTGKTTVAEFL-----KKEKIPVISSD 32
L IG+ G +G+GKT + E L +K ++ VI++D
Sbjct: 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITND 37
>gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional.
Length = 182
Score = 26.6 bits (59), Expect = 4.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKE 24
II + G GKTT+ E L +
Sbjct: 5 IITIAAVSGGGKTTLTERLTHK 26
>gnl|CDD|184933 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 26.6 bits (59), Expect = 4.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 7 TGSIGTGKTTVAEFLKK 23
TG+ G GKTT+A L K
Sbjct: 44 TGTRGVGKTTLARILAK 60
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 26.6 bits (58), Expect = 4.7
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 44 VDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHE 91
+ ++ +T P +I V++ L + + PA L+I++ + +VR+ E
Sbjct: 358 ITVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPE 405
>gnl|CDD|114590 pfam05872, DUF853, Bacterial protein of unknown function
(DUF853). This family consists of several bacterial
proteins of unknown function. One member from Brucella
melitensis is thought to be an ATPase.
Length = 504
Score = 26.6 bits (59), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 5 GL-TGSIGTGKT----TVAEFLKKEKIPVISSD 32
GL G+ GTGKT +AE +PV +D
Sbjct: 24 GLIAGATGTGKTVTLQVLAESFSDAGVPVFLAD 56
>gnl|CDD|179530 PRK03059, PRK03059, PII uridylyl-transferase; Provisional.
Length = 856
Score = 26.4 bits (59), Expect = 5.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 38 LYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKIL 95
LY+ A D++ F R + VN+A + ILQ+ P I H + M++ +L
Sbjct: 373 LYN--ARDVMNAAFRR----DPVNRALFMQILQQ-P------RGITHALRLMNQTSVL 417
>gnl|CDD|180082 PRK05439, PRK05439, pantothenate kinase; Provisional.
Length = 311
Score = 26.3 bits (59), Expect = 5.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 3 IIGLTGSIGTGKTTVAEFLKK 23
IIG+ GS+ GK+T A L+
Sbjct: 88 IIGIAGSVAVGKSTTARLLQA 108
>gnl|CDD|129645 TIGR00554, panK_bact, pantothenate kinase, bacterial type. Shown
to be a homodimer in E. coli. This enzyme catalyzes the
rate-limiting step in the biosynthesis of coenzyme A. It
is very well conserved from E. coli to B. subtilis, but
differs considerably from known eukaryotic forms,
described in a separate model.
Length = 290
Score = 26.4 bits (58), Expect = 5.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 3 IIGLTGSIGTGKTTVAEFLKK--------EKIPVISSDDIVDKLYHYEAVDII-KKTFPR 53
II + GS+ GK+T A L+ K+ +I++D + + +++ KK FP
Sbjct: 64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPE 123
Query: 54 S 54
S
Sbjct: 124 S 124
>gnl|CDD|177411 PHA02582, 10, baseplate wedge subunit and tail pin; Provisional.
Length = 604
Score = 26.2 bits (58), Expect = 5.8
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 11 GTGKTTVAEFLKKEKIPVISSDDIV 35
GTG +T LKKE IP + SDD V
Sbjct: 520 GTGGSTSVT-LKKENIPELQSDDKV 543
>gnl|CDD|149480 pfam08433, KTI12, Chromatin associated protein KTI12. This is a
family of chromatin associated proteins which interact
with the Elongator complex, a component of the
elongating form of RNA polymerase II. The Elongator
complex has histone acetyltransferase activity.
Length = 266
Score = 26.1 bits (58), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 2 LIIGLTGSIGTGKTTVAEFLKKE------KIPVISSDDI 34
LII LTG +GK+T A+ L K + VIS + +
Sbjct: 1 LII-LTGLPSSGKSTRAKELAKYLEEKGYDVIVISDESL 38
>gnl|CDD|185352 PRK15455, PRK15455, PrkA family serine protein kinase; Provisional.
Length = 644
Score = 26.1 bits (58), Expect = 6.1
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 3 IIGLTGSIGTGKTTVAEFLKK--EKIPV 28
I+ L G +G GK+++AE LK E++P+
Sbjct: 105 ILYLLGPVGGGKSSLAERLKSLMERVPI 132
>gnl|CDD|150993 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling
protein DNA-binding domain. The plasmid conjugative
coupling protein TrwB forms hexamers from six
structurally very similar protomers. This hexamer
contains a central channel running from the cytosolic
pole (made up by the AADs) to the membrane pole ending
at the transmembrane pore shaped by 12 transmembrane
helices, rendering an overall mushroom-like structure.
The TrwB_AAD (all-alpha domain) domain appears to be
the DNA-binding domain of the structure. TrwB, a basic
integral inner-membrane nucleoside-triphosphate-binding
protein, is the structural prototype for the type IV
secretion system coupling proteins, a family of
proteins essential for macromolecular transport between
cells and export.
Length = 386
Score = 26.0 bits (58), Expect = 6.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 IGLTGSIGTGKTTV 17
I + G+ GTGKT
Sbjct: 18 ILIVGTTGTGKTQA 31
>gnl|CDD|183386 PRK11930, PRK11930, putative bifunctional
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
ligase/alanine racemase; Provisional.
Length = 822
Score = 26.1 bits (58), Expect = 6.3
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 3 IIGLTGSIGTGKTTVAEFL 21
+IG+TGS GKT V E+L
Sbjct: 109 VIGITGS--NGKTIVKEWL 125
>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 26.1 bits (58), Expect = 6.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 4 IGLTGSIGTGKTTVAE 19
IG+ I GKTT+ E
Sbjct: 11 IGILAHIDAGKTTLTE 26
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 26.1 bits (58), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKI 26
M I L G G GKTT+ + L E++
Sbjct: 1 MKKIMLIGRSGCGKTTLTQALNGEEL 26
>gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 25.7 bits (57), Expect = 7.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 3 IIGLTGSIGTGKTTVAEFLKK 23
I+ L G +G GK+++ E LK+
Sbjct: 80 ILYLLGPVGGGKSSLVECLKR 100
>gnl|CDD|184914 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 25.9 bits (57), Expect = 7.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 7 TGSIGTGKTTVAEFLKK 23
TG G GKT+ A L K
Sbjct: 44 TGPRGVGKTSTARILAK 60
>gnl|CDD|185419 PTZ00056, PTZ00056, glutathione peroxidase; Provisional.
Length = 199
Score = 25.6 bits (56), Expect = 8.0
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 20 FLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEIL 79
F KK + S D++ +Y Y + T P S NKV ++ S +K +
Sbjct: 4 FFKKITV---SKDELRKSIYDYTVKTLEGTTVPMSSLKNKVL------MITNSASKCGLT 54
Query: 80 EKIVHPMVRMHEKKILHDLSCRGEKIVFFDT 110
+K V M R+H + G +I+ F T
Sbjct: 55 KKHVDQMNRLHSV-----FNPLGLEILAFPT 80
>gnl|CDD|184081 PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD;
Provisional.
Length = 201
Score = 25.7 bits (57), Expect = 8.3
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 17 VAEFLKKEKIPVISSD 32
V ++L+ E+IP+++ D
Sbjct: 132 VRDYLQTERIPIVAED 147
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 25.5 bits (56), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 4 IGLTGSIGTGKTTVAEFLKKEKIPVISSD 32
+GL G G GK+T+ LK E IS+D
Sbjct: 30 VGLVGKNGCGKSTLLALLKNE----ISAD 54
>gnl|CDD|168091 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 25.8 bits (57), Expect = 8.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 2 LIIGLTGSIGTGKTTVAEFLKK 23
+I +TG G+GKTT+A+ L +
Sbjct: 8 YVIWITGLAGSGKTTIAKALYE 29
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 25.4 bits (57), Expect = 9.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 11 GTGKTTVAEFLKKE 24
GTGKTT+A +
Sbjct: 46 GTGKTTLARIIAGA 59
>gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 25.4 bits (56), Expect = 9.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 13 GKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDI 46
GK + F+ KIP+I+ D++VD + AV I
Sbjct: 285 GKELIHPFIPDRKIPIIADDELVDMEFGTGAVKI 318
>gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of
this family are the GvpN protein associated with the
production of gas vesicles produced in some prokaryotes
to give cells buoyancy. This family belongs to a larger
family of ATPases (pfam07728).
Length = 262
Score = 25.5 bits (56), Expect = 9.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 4 IGLTGSIGTGKTTVAEFL-KKEKIPVI 29
+ L G GTGKTT+A + +K PV+
Sbjct: 24 VHLRGPAGTGKTTLAMHVARKRDRPVM 50
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 25.4 bits (56), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 2 LIIGLTGSIGTGKTTVAEFLKKE 24
+ + TG G GKTT+A L ++
Sbjct: 5 VTVWFTGLSGAGKTTIARALAEK 27
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.136 0.371
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,201,262
Number of extensions: 204188
Number of successful extensions: 899
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 128
Length of query: 199
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,071,361
Effective search space: 447849710
Effective search space used: 447849710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)