BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase
[Candidatus Liberibacter asiaticus str. psy62]
(199 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 401 bits (1030), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKV 60
MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKV
Sbjct: 1 MLIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKV 60
Query: 61 NKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEY 120
NKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEY
Sbjct: 61 NKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEY 120
Query: 121 LFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGTIEAI 180
LFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGTIEAI
Sbjct: 121 LFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMNEKDKISRADYVINTEGTIEAI 180
Query: 181 EKETQKMLKYILKINDSKK 199
EKETQKMLKYILKINDSKK
Sbjct: 181 EKETQKMLKYILKINDSKK 199
>gi|254780827|ref|YP_003065240.1| pantothenate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 311
Score = 31.2 bits (69), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 2 LIIGLTGSIGTGKTTVAEFL-------KKEKIPVISSDDIVDKLYHYEAVDII-KKTFPR 53
++G+TGS+ GK+T A L K+ +I++D + A +++ +K FP
Sbjct: 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPE 143
Query: 54 SIQNNKV 60
S +NK+
Sbjct: 144 SYDSNKL 150
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 26.2 bits (56), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 109 DTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEEN 149
DTPLL E+ EYLF +T ++ ++ K T N
Sbjct: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Length = 404
Score = 25.8 bits (55), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 36/60 (60%)
Query: 97 DLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSK 156
+++ R + ++ D PLL E RK+++ ++++ +E + ++S +++ E+ F + L K
Sbjct: 294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRK 353
>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 503
Score = 25.0 bits (53), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 2 LIIGLTGSIGTGKTTVAEFLKKEKI 26
+ IG++ SIG K ++ FL++E +
Sbjct: 227 MAIGVSYSIGKSKGSITHFLRRESL 251
>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
[Candidatus Liberibacter asiaticus str. psy62]
Length = 581
Score = 25.0 bits (53), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 114 FEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSKQMN-----EKD-KISRA 167
F + +YL D F +L K T NFLF +K+ EKD I R
Sbjct: 271 FHSQFKYLSDGHARYQAKFSANEITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRF 330
Query: 168 DYVINTEGTIEAIEKETQKMLKYILKI 194
+ +I+ G I K ++ Y +
Sbjct: 331 EMLID-WGWFYFIAKPMFMLMSYFYNL 356
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 24.3 bits (51), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIP 27
I+G+ G G GKTT+ L ++ P
Sbjct: 345 IVGVIGPNGAGKTTLFRMLTGDESP 369
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 24.3 bits (51), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAV 44
++ + G G+GK+T++ L K I++ DI LY E++
Sbjct: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI---LYKGESI 69
>gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 232
Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 144 KHTEENFLFILSKQMNEKDKISRADYV 170
K EEN L +S + K +++ DYV
Sbjct: 184 KKIEENVLAFVSAVVKAKPSVAKGDYV 210
>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 820
Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 28 VISSDDIVDKLYHYEAVDIIKKTFPRSIQNN 58
++S++ V KL+ Y DI++K F ++ N
Sbjct: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component
of ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 23.5 bits (49), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISS 31
I+ L G G+GK+T+A+ + P I S
Sbjct: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
>gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str.
psy62]
Length = 364
Score = 23.5 bits (49), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIPVIS-SDDIVDKLYHYEAVDI 46
I+G S+GTG ++ + +KI V+ D ++ YE+ +I
Sbjct: 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNI 203
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 23.5 bits (49), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 104 KIVFFDTPLLFEKRKEY 120
+IVF DTP +F + Y
Sbjct: 71 QIVFLDTPGIFNAKDSY 87
>gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus
str. psy62]
Length = 345
Score = 23.1 bits (48), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIV 106
LE+L K +H + ILH LS R KI+
Sbjct: 272 LEVLGKALHGTSIETQNAILHCLSNRQRKII 302
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 23.1 bits (48), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 4 IGLTGSIGTGKTTVAEFL 21
IG+ G G GKTT+ + L
Sbjct: 313 IGIVGPNGAGKTTLLKLL 330
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 22.7 bits (47), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 3 IIGLTGSIGTGKTTV 17
I+GL G G+GK+T+
Sbjct: 45 IVGLLGRSGSGKSTL 59
>gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 492
Score = 22.3 bits (46), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 142 RKKHTEENFLFILSKQMNEKDKISRADYVINTE-GTIEAIEKETQKMLK 189
R+K + FL +S+ M EKD++++A + + T+ A+ + T + K
Sbjct: 331 REKLSTTEFLSRVSQWMKEKDRLTQALTLAQSRITTLSALPQMTDFLFK 379
>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
Length = 307
Score = 22.3 bits (46), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 36 DKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGI 68
++L HY +I K P ++QN + + +GI
Sbjct: 79 NRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGI 111
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 22.3 bits (46), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 3 IIGLTGSIGTGKTT 16
I+GL G G GKTT
Sbjct: 53 IVGLLGPNGAGKTT 66
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 21.9 bits (45), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 4 IGLTGSIGTGKTTVAEFLKKEKIPVISSDDIV--DKLY 39
I + G+ GK+T+ L K+K+ V+ + + D+LY
Sbjct: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY 42
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 21.9 bits (45), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 3 IIGLTGSIGTGKTTVAEFLKKEKIP----VISSDDIVDKL 38
I+ L GTGK+T+ ++P VI ++ + +KL
Sbjct: 38 IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKL 77
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.136 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,183
Number of Sequences: 1233
Number of extensions: 5461
Number of successful extensions: 43
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 26
length of query: 199
length of database: 328,796
effective HSP length: 70
effective length of query: 129
effective length of database: 242,486
effective search space: 31280694
effective search space used: 31280694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)