Query gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 418
No_of_seqs 142 out of 636
Neff 7.0
Searched_HMMs 39220
Date Sun May 29 18:27:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764478.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam02073 Peptidase_M29 Thermo 100.0 0 0 940.8 47.8 402 13-416 3-404 (404)
2 COG2309 AmpS Leucyl aminopepti 100.0 0 0 705.7 35.5 380 15-417 3-385 (385)
3 pfam10575 consensus 92.4 0.18 4.5E-06 30.2 3.8 61 2-67 2-67 (159)
4 PRK02947 hypothetical protein; 91.4 0.22 5.5E-06 29.5 3.4 54 13-68 89-142 (247)
5 COG4821 Uncharacterized protei 89.4 1.8 4.5E-05 23.1 7.5 47 14-61 87-133 (243)
6 TIGR01733 AA-adenyl-dom amino 87.1 2.5 6.3E-05 22.2 8.1 185 14-221 7-236 (452)
7 PRK05620 acyl-CoA synthetase; 81.8 4.1 0.0001 20.6 7.6 52 14-68 46-97 (571)
8 PRK11706 TDP-4-oxo-6-deoxy-D-g 75.4 5.7 0.00014 19.6 4.4 43 22-70 61-103 (375)
9 PRK10946 entE enterobactin syn 74.8 6.5 0.00017 19.2 5.8 53 14-70 56-108 (536)
10 PRK10754 quinone oxidoreductas 73.4 7 0.00018 19.0 7.1 61 23-86 131-191 (327)
11 TIGR01367 pyrE_Therm orotate p 73.0 2.9 7.4E-05 21.7 2.5 40 24-63 102-142 (205)
12 PRK00509 argininosuccinate syn 72.6 7.3 0.00019 18.9 7.6 35 34-68 29-64 (398)
13 pfam04015 DUF362 Domain of unk 72.4 7.2 0.00018 18.9 4.4 39 27-65 29-78 (262)
14 COG4384 Mu-like prophage prote 69.6 8.5 0.00022 18.4 9.3 112 225-349 36-162 (203)
15 COG4555 NatA ABC-type Na+ tran 69.4 7.1 0.00018 19.0 3.8 31 23-53 18-50 (245)
16 PTZ00165 aspartyl protease; Pr 69.0 8.5 0.00022 18.4 4.1 46 200-245 140-187 (505)
17 COG2089 SpsE Sialic acid synth 67.4 9.3 0.00024 18.1 4.9 81 28-108 7-108 (347)
18 TIGR02275 DHB_AMP_lig 2,3-dihy 66.6 9.7 0.00025 18.0 5.7 50 14-67 56-105 (534)
19 TIGR02824 quinone_pig3 putativ 66.3 9.8 0.00025 18.0 6.4 53 16-71 130-201 (334)
20 PRK06087 short chain acyl-CoA 65.3 10 0.00026 17.8 8.1 52 13-68 57-108 (548)
21 PRK07470 acyl-CoA synthetase; 64.4 11 0.00027 17.7 7.9 52 14-69 40-91 (528)
22 PRK09274 peptide synthase; Pro 64.1 11 0.00027 17.7 5.7 49 14-66 50-98 (555)
23 PRK05857 acyl-CoA synthetase; 63.6 11 0.00028 17.6 6.1 54 13-70 40-93 (532)
24 PRK11658 UDP-4-amino-4-deoxy-L 63.5 11 0.00028 17.6 4.0 39 26-69 66-104 (379)
25 cd01821 Rhamnogalacturan_acety 63.0 11 0.00029 17.6 4.0 55 5-66 45-114 (198)
26 PRK08316 acyl-CoA synthetase; 62.2 12 0.0003 17.5 8.0 51 14-68 44-94 (525)
27 cd03248 ABCC_TAP TAP, the Tran 61.4 12 0.00031 17.4 5.4 62 261-324 3-75 (226)
28 TIGR03588 PseC UDP-4-keto-6-de 61.2 12 0.00031 17.3 4.6 38 26-68 62-99 (380)
29 PRK12406 acyl-CoA synthetase; 61.1 12 0.00031 17.3 7.6 52 14-69 20-71 (510)
30 PRK09620 hypothetical protein; 61.1 11 0.00029 17.5 3.5 34 32-65 2-49 (229)
31 KOG1176 consensus 60.9 12 0.00031 17.3 7.3 52 14-67 53-104 (537)
32 PRK00174 acetyl-CoA synthetase 60.4 12 0.00032 17.3 7.5 45 14-62 115-159 (648)
33 TIGR00538 hemN oxygen-independ 59.9 13 0.00032 17.2 4.4 126 45-248 189-319 (462)
34 PRK04319 acetyl-CoA synthetase 59.8 13 0.00032 17.2 7.5 50 13-66 80-129 (570)
35 PRK08558 adenine phosphoribosy 59.8 13 0.00032 17.2 3.6 25 304-329 190-214 (238)
36 TIGR02768 TraA_Ti Ti-type conj 59.5 13 0.00033 17.2 4.6 243 23-319 491-767 (888)
37 pfam04127 DFP DNA / pantothena 59.1 5.6 0.00014 19.7 1.7 34 32-65 1-48 (197)
38 PRK08008 caiC putative crotono 57.9 14 0.00035 17.0 8.1 54 13-70 44-97 (517)
39 PRK08751 putative long-chain f 57.4 14 0.00036 16.9 8.1 51 14-67 58-108 (560)
40 PRK07059 acyl-CoA synthetase; 57.2 14 0.00036 16.9 7.6 51 13-67 55-105 (557)
41 PRK10524 prpE propionyl-CoA sy 57.1 14 0.00036 16.9 7.5 45 14-62 92-136 (629)
42 PRK06368 consensus 56.9 14 0.00036 16.9 7.6 53 14-70 40-92 (529)
43 pfam09890 DUF2117 Uncharacteri 56.8 14 0.00036 16.9 4.3 39 253-306 94-133 (209)
44 PRK07771 consensus 56.7 14 0.00036 16.8 7.1 51 14-68 46-96 (541)
45 PRK06512 thiamine-phosphate py 56.1 15 0.00037 16.8 9.7 168 10-208 50-217 (221)
46 pfam03192 DUF257 Pyrococcus pr 55.8 15 0.00038 16.7 4.5 42 29-70 7-50 (210)
47 PRK08276 acyl-CoA synthetase; 55.7 15 0.00038 16.7 6.7 54 14-71 32-85 (507)
48 COG0604 Qor NADPH:quinone redu 55.6 15 0.00038 16.7 7.7 89 20-111 130-220 (326)
49 cd03291 ABCC_CFTR1 The CFTR su 55.4 15 0.00038 16.7 4.0 31 22-52 52-84 (282)
50 PRK09088 acyl-CoA synthetase; 54.8 15 0.00039 16.6 6.5 54 14-71 30-83 (485)
51 pfam01041 DegT_DnrJ_EryC1 DegT 54.6 15 0.00039 16.6 4.4 38 26-68 58-95 (363)
52 PRK09192 acyl-CoA synthetase; 54.5 15 0.00039 16.6 5.3 50 13-66 56-105 (580)
53 PRK08162 acyl-CoA synthetase; 54.5 15 0.00039 16.6 7.4 51 14-68 51-101 (545)
54 TIGR03208 cyc_hxne_CoA_lg cycl 54.0 16 0.0004 16.5 7.8 52 13-68 60-111 (538)
55 PRK13295 cyclohexanecarboxylat 53.5 16 0.00041 16.5 9.5 50 14-67 62-111 (546)
56 cd00616 AHBA_syn 3-amino-5-hyd 52.8 16 0.00042 16.4 4.5 42 23-69 48-89 (352)
57 PRK08315 acyl-CoA synthetase; 52.6 17 0.00042 16.4 7.7 49 14-66 53-101 (561)
58 PTZ00237 acetyl-CoA synthetase 51.5 17 0.00044 16.3 7.5 44 14-61 100-143 (649)
59 PRK07514 malonyl-CoA synthase; 51.2 17 0.00044 16.2 6.7 51 14-68 36-86 (504)
60 PRK07786 acyl-CoA synthetase; 51.0 18 0.00045 16.2 8.1 51 14-68 55-105 (551)
61 PRK12583 acyl-CoA synthetase; 50.9 18 0.00045 16.2 7.9 51 14-68 53-103 (558)
62 PRK07768 acyl-CoA synthetase; 49.9 18 0.00046 16.1 6.2 53 14-70 37-89 (543)
63 cd03088 ManB ManB is a bacteri 49.8 18 0.00047 16.1 8.7 55 8-62 11-67 (459)
64 COG0318 CaiC Acyl-CoA syntheta 49.7 18 0.00047 16.1 6.8 52 14-69 46-97 (534)
65 PRK06219 consensus 49.6 18 0.00047 16.1 7.6 50 14-67 50-99 (547)
66 TIGR02363 dhaK1 dihydroxyaceto 49.3 3.7 9.4E-05 20.9 -0.6 98 256-358 76-225 (354)
67 COG5485 Predicted ester cyclas 49.3 19 0.00047 16.0 3.4 40 253-306 83-123 (131)
68 COG0426 FpaA Uncharacterized f 48.8 19 0.00048 16.0 6.8 31 296-328 279-309 (388)
69 PRK03640 O-succinylbenzoic aci 48.4 19 0.00049 16.0 8.2 53 14-70 35-87 (481)
70 PRK06155 crotonobetaine/carnit 48.1 19 0.00049 15.9 8.0 54 13-70 65-118 (552)
71 PRK07770 consensus 47.8 20 0.0005 15.9 7.8 53 14-70 40-92 (508)
72 KOG1197 consensus 47.8 20 0.0005 15.9 7.5 90 20-110 134-245 (336)
73 PRK12560 adenine phosphoribosy 47.8 20 0.0005 15.9 3.8 24 253-276 83-107 (184)
74 TIGR02518 EutH_ACDH acetaldehy 47.1 20 0.00051 15.8 3.0 69 203-273 229-299 (528)
75 PHA02131 hypothetical protein 46.9 20 0.00051 15.8 3.7 48 264-314 8-57 (70)
76 PRK11176 lipid transporter ATP 46.0 21 0.00053 15.7 3.5 57 268-324 337-403 (581)
77 PRK07656 acyl-CoA synthetase; 45.6 21 0.00054 15.7 7.7 49 14-66 39-87 (520)
78 PRK08974 long-chain-fatty-acid 45.6 21 0.00054 15.7 7.9 51 14-67 56-106 (559)
79 PRK04813 D-alanine--D-alanyl c 45.4 21 0.00054 15.6 6.6 53 13-69 34-86 (503)
80 KOG2733 consensus 45.4 21 0.00054 15.6 4.0 66 8-76 38-126 (423)
81 TIGR03205 pimA dicarboxylate-- 44.6 22 0.00055 15.6 8.1 53 14-70 54-106 (541)
82 COG0133 TrpB Tryptophan syntha 44.4 22 0.00056 15.5 3.8 36 38-76 106-143 (396)
83 pfam08553 VID27 VID27 cytoplas 44.1 22 0.00056 15.5 3.1 169 224-409 427-628 (788)
84 TIGR01893 aa-his-dipept aminoa 44.1 7.5 0.00019 18.8 0.3 102 186-302 272-385 (506)
85 PRK09029 O-succinylbenzoic aci 44.0 22 0.00057 15.5 8.2 53 13-69 35-87 (458)
86 PRK07008 acyl-CoA synthetase; 43.4 23 0.00058 15.4 7.8 51 14-68 47-97 (539)
87 COG4069 Uncharacterized protei 43.1 23 0.00058 15.4 4.5 32 268-306 175-206 (367)
88 PRK13390 acyl-CoA synthetase; 43.0 23 0.00058 15.4 7.8 52 13-68 31-82 (501)
89 PRK13391 acyl-CoA synthetase; 42.9 23 0.00059 15.4 7.4 51 14-68 32-82 (514)
90 PRK13383 acyl-CoA synthetase; 42.7 23 0.00059 15.4 7.6 53 13-69 67-119 (516)
91 cd03065 PDI_b_Calsequestrin_N 42.6 23 0.00059 15.4 3.6 24 290-313 92-115 (120)
92 pfam11006 DUF2845 Protein of u 42.4 23 0.0006 15.3 2.7 15 289-303 70-84 (85)
93 TIGR03201 dearomat_had 6-hydro 42.3 23 0.0006 15.3 4.4 31 28-61 162-192 (349)
94 TIGR00958 3a01208 antigen pept 42.3 24 0.0006 15.3 4.3 57 261-319 522-589 (770)
95 PRK05677 acyl-CoA synthetase; 42.2 24 0.0006 15.3 7.6 50 14-66 57-106 (562)
96 TIGR02619 TIGR02619 putative C 42.1 24 0.0006 15.3 5.9 38 27-64 99-136 (151)
97 PRK07788 acyl-CoA synthetase; 41.8 24 0.00061 15.3 7.8 53 13-69 85-137 (552)
98 COG2006 Uncharacterized conser 41.5 24 0.00062 15.2 6.0 37 30-66 34-81 (293)
99 PRK10657 isoaspartyl dipeptida 40.7 25 0.00063 15.2 2.6 29 386-416 349-377 (384)
100 TIGR01090 apt adenine phosphor 40.7 25 0.00063 15.2 3.9 20 13-32 28-47 (175)
101 TIGR01038 L22_arch ribosomal p 40.4 17 0.00042 16.4 1.6 14 146-159 72-85 (151)
102 PRK08308 acyl-CoA synthetase; 40.3 25 0.00064 15.1 8.1 104 13-121 15-121 (413)
103 pfam02144 Rad1 Repair protein 40.2 24 0.00062 15.2 2.5 19 215-233 95-113 (250)
104 KOG1201 consensus 40.0 25 0.00065 15.1 5.6 53 17-71 22-74 (300)
105 smart00829 PKS_ER Enoylreducta 39.6 26 0.00066 15.0 6.5 38 27-67 99-136 (288)
106 PRK07684 consensus 39.6 26 0.00066 15.0 6.6 53 14-70 36-88 (516)
107 PRK03584 acetoacetyl-CoA synth 39.1 26 0.00067 15.0 7.8 46 13-62 123-168 (652)
108 TIGR01344 malate_syn_A malate 39.1 19 0.00048 16.0 1.8 18 10-27 287-304 (522)
109 COG0399 WecE Predicted pyridox 39.1 26 0.00067 15.0 4.7 39 27-70 68-106 (374)
110 PRK12492 acyl-CoA synthetase; 38.8 27 0.00068 15.0 7.6 51 14-67 57-107 (562)
111 PRK06188 acyl-CoA synthetase; 38.6 27 0.00068 14.9 7.8 50 14-67 43-92 (522)
112 cd05005 SIS_PHI Hexulose-6-pho 38.5 27 0.00068 14.9 5.5 50 4-60 11-60 (179)
113 PRK12476 acyl-CoA synthetase; 38.1 27 0.00069 14.9 6.2 48 13-65 75-122 (612)
114 COG0503 Apt Adenine/guanine ph 37.9 27 0.0007 14.9 3.9 27 303-330 129-155 (179)
115 PRK05850 acyl-CoA synthetase; 37.8 27 0.0007 14.9 4.9 49 13-66 45-93 (581)
116 PRK10646 putative ATPase; Prov 37.7 28 0.0007 14.8 3.7 44 9-55 7-52 (153)
117 PRK08452 flagellar protein Fla 37.5 14 0.00036 16.9 0.9 32 196-233 50-81 (126)
118 PTZ00265 multidrug resistance 37.4 28 0.00071 14.8 4.4 47 268-314 1163-1220(1467)
119 cd02769 MopB_DMSOR-BSOR-TMAOR 37.4 28 0.00071 14.8 3.1 13 202-214 297-309 (609)
120 pfam11525 CopK Copper resistan 37.2 23 0.00058 15.4 1.9 29 286-315 40-68 (73)
121 TIGR01389 recQ ATP-dependent D 36.7 20 0.00051 15.8 1.6 191 76-389 105-303 (607)
122 PRK11595 gluconate periplasmic 36.7 29 0.00073 14.7 4.2 12 150-161 114-125 (227)
123 PRK09814 hypothetical protein; 36.7 29 0.00073 14.7 9.9 83 15-108 47-130 (337)
124 COG0802 Predicted ATPase or ki 36.7 29 0.00073 14.7 4.1 42 12-56 7-50 (149)
125 PRK06178 acyl-CoA synthetase; 36.3 29 0.00074 14.7 7.9 52 13-68 65-116 (567)
126 PRK13982 bifunctional SbtC-lik 36.3 29 0.00074 14.7 4.7 37 34-71 73-109 (476)
127 TIGR00632 vsr DNA mismatch end 36.1 18 0.00045 16.2 1.3 37 226-264 75-114 (143)
128 PRK06839 acyl-CoA synthetase; 35.8 29 0.00075 14.6 6.8 53 15-70 36-88 (496)
129 KOG0572 consensus 35.7 30 0.00075 14.6 4.2 88 11-101 58-162 (474)
130 PRK08314 acyl-CoA synthetase; 35.6 30 0.00076 14.6 7.7 51 14-67 43-93 (544)
131 PRK06018 putative acyl-CoA syn 35.3 30 0.00076 14.6 7.5 51 14-68 47-97 (540)
132 TIGR02379 ECA_wecE TDP-4-keto- 35.3 30 0.00076 14.6 2.6 49 15-73 58-106 (376)
133 PRK08279 acyl-CoA synthetase; 35.2 30 0.00077 14.6 7.5 51 14-68 75-125 (602)
134 PRK13382 acyl-CoA synthetase; 34.7 31 0.00078 14.5 7.5 54 13-70 75-128 (540)
135 PRK07272 amidophosphoribosyltr 34.7 31 0.00078 14.5 4.1 14 249-262 216-229 (484)
136 PRK06187 acyl-CoA synthetase; 34.6 31 0.00078 14.5 7.4 51 14-68 39-89 (520)
137 PRK06164 acyl-CoA synthetase; 34.5 31 0.00079 14.5 8.1 51 13-67 42-92 (541)
138 PRK07769 acyl-CoA synthetase; 34.1 31 0.0008 14.5 5.9 47 14-65 61-107 (629)
139 PRK08341 amidophosphoribosyltr 33.3 32 0.00082 14.4 3.0 10 253-262 207-216 (442)
140 pfam02878 PGM_PMM_I Phosphoglu 33.1 32 0.00083 14.4 8.7 90 10-120 17-109 (138)
141 cd01308 Isoaspartyl-dipeptidas 33.0 32 0.00083 14.3 2.5 29 386-416 352-380 (387)
142 PRK07529 acyl-CoA synthetase; 33.0 33 0.00083 14.3 5.3 43 14-60 66-108 (632)
143 TIGR03127 RuMP_HxlB 6-phospho 32.5 33 0.00084 14.3 5.6 51 3-60 7-57 (179)
144 pfam00718 Polyoma_coat Polyoma 32.2 33 0.00085 14.3 3.1 44 315-358 192-235 (296)
145 PRK07798 acyl-CoA synthetase; 32.1 34 0.00086 14.2 6.5 49 14-66 36-84 (532)
146 TIGR03451 mycoS_dep_FDH mycoth 31.8 34 0.00087 14.2 6.5 10 29-38 173-182 (358)
147 TIGR00692 tdh L-threonine 3-de 31.7 34 0.00087 14.2 7.0 145 23-203 151-301 (341)
148 PRK09219 xanthine phosphoribos 31.5 34 0.00087 14.2 3.6 10 257-266 89-98 (189)
149 TIGR01394 TypA_BipA GTP-bindin 31.5 34 0.00087 14.2 3.0 68 35-108 98-177 (609)
150 pfam09572 RE_XamI XamI restric 31.5 34 0.00088 14.2 4.1 75 132-220 67-143 (251)
151 PRK04527 argininosuccinate syn 31.4 34 0.00088 14.2 8.7 43 286-329 217-261 (397)
152 TIGR02729 Obg_CgtA GTP-binding 31.4 24 0.0006 15.3 1.2 44 181-227 246-294 (296)
153 cd01133 F1-ATPase_beta F1 ATP 31.3 35 0.00088 14.2 5.8 37 24-60 60-98 (274)
154 PRK13820 argininosuccinate syn 31.2 35 0.00089 14.1 11.3 208 34-314 31-244 (395)
155 TIGR01421 gluta_reduc_1 glutat 31.2 35 0.00089 14.1 3.0 106 194-315 83-202 (475)
156 PRK06060 acyl-CoA synthetase; 31.0 35 0.00089 14.1 7.9 53 13-69 37-89 (705)
157 PRK08247 cystathionine gamma-s 30.8 35 0.0009 14.1 11.7 112 189-313 231-359 (366)
158 PRK05605 acyl-CoA synthetase; 30.5 36 0.00091 14.1 7.7 50 13-66 61-110 (571)
159 PRK05852 acyl-CoA synthetase; 30.2 36 0.00092 14.0 6.7 54 13-70 50-103 (530)
160 PRK06145 acyl-CoA synthetase; 29.9 36 0.00093 14.0 7.9 54 13-70 34-87 (497)
161 cd03268 ABC_BcrA_bacitracin_re 29.4 37 0.00095 13.9 2.5 32 24-55 17-50 (208)
162 TIGR03098 ligase_PEP_1 acyl-Co 29.0 38 0.00096 13.9 8.0 50 14-67 33-82 (515)
163 TIGR00068 glyox_I lactoylgluta 28.9 24 0.00061 15.3 0.9 45 286-331 82-129 (183)
164 PRK11337 DNA-binding transcrip 28.7 38 0.00097 13.9 5.0 20 201-222 129-148 (293)
165 TIGR01324 cysta_beta_ly_B cyst 28.5 38 0.00098 13.8 6.5 152 30-218 91-280 (389)
166 TIGR02982 heterocyst_DevA ABC 28.0 18 0.00046 16.1 0.2 24 21-44 19-42 (220)
167 pfam00501 AMP-binding AMP-bind 27.7 40 0.001 13.7 6.8 52 14-69 7-58 (412)
168 TIGR00904 mreB cell shape dete 27.6 40 0.001 13.7 5.3 55 12-66 80-135 (337)
169 pfam02367 UPF0079 Uncharacteri 27.6 40 0.001 13.7 2.8 35 18-55 3-39 (123)
170 COG1021 EntE Peptide arylation 27.6 40 0.001 13.7 5.9 49 15-67 62-110 (542)
171 COG3665 Uncharacterized conser 27.5 40 0.001 13.7 2.4 29 320-350 169-197 (264)
172 TIGR02668 moaA_archaeal probab 27.1 41 0.001 13.7 3.9 53 15-67 102-163 (324)
173 cd03345 eu_TyrOH Eukaryotic ty 26.7 41 0.0011 13.6 3.0 59 14-74 7-67 (298)
174 PRK09255 malate synthase; Vali 26.6 41 0.0011 13.6 2.4 31 34-69 88-118 (531)
175 COG4939 Major membrane immunog 26.3 42 0.0011 13.6 3.6 18 286-303 48-65 (147)
176 pfam09533 DUF2380 Predicted li 26.3 42 0.0011 13.6 2.0 33 253-285 98-130 (220)
177 PRK13646 cbiO cobalt transport 26.2 42 0.0011 13.6 2.2 31 23-53 23-55 (286)
178 PRK08690 enoyl-(acyl carrier p 26.0 42 0.0011 13.5 5.0 37 28-64 1-37 (261)
179 PRK06710 acyl-CoA synthetase; 25.9 42 0.0011 13.5 7.8 50 14-67 57-106 (563)
180 COG0034 PurF Glutamine phospho 25.8 43 0.0011 13.5 3.1 26 353-379 380-408 (470)
181 COG1212 KdsB CMP-2-keto-3-deox 25.4 43 0.0011 13.5 4.3 40 40-79 23-62 (247)
182 PRK05793 amidophosphoribosyltr 25.4 43 0.0011 13.5 3.0 17 247-263 220-236 (472)
183 PRK07349 amidophosphoribosyltr 25.0 44 0.0011 13.4 3.2 21 51-73 139-159 (495)
184 TIGR02188 Ac_CoA_lig_AcsA acet 24.9 44 0.0011 13.4 6.8 262 15-360 105-405 (643)
185 TIGR01678 FAD_lactone_ox sugar 24.9 44 0.0011 13.4 3.4 60 265-330 113-177 (505)
186 PRK08159 enoyl-(acyl carrier p 24.8 44 0.0011 13.4 4.6 43 27-70 4-46 (272)
187 PRK02304 adenine phosphoribosy 24.7 45 0.0011 13.4 3.8 22 306-328 129-150 (174)
188 COG1839 Uncharacterized conser 24.7 45 0.0011 13.4 4.0 56 15-70 28-90 (162)
189 PRK08180 feruloyl-CoA synthase 24.7 45 0.0011 13.4 5.6 48 14-65 76-123 (612)
190 KOG0056 consensus 24.3 45 0.0012 13.3 5.0 72 262-333 528-622 (790)
191 TIGR01439 lp_hng_hel_AbrB tran 24.2 46 0.0012 13.3 2.1 17 24-40 16-32 (44)
192 PTZ00013 plasmepsin 4 (PM4); P 24.1 46 0.0012 13.3 2.4 60 217-276 142-213 (450)
193 PTZ00059 dynein light chain; P 23.9 46 0.0012 13.3 2.7 19 345-363 46-66 (90)
194 cd03346 eu_TrpOH Eukaryotic tr 23.4 47 0.0012 13.2 2.7 59 14-74 8-68 (287)
195 PTZ00147 histoaspartic proteas 23.4 47 0.0012 13.2 2.4 61 216-276 142-214 (453)
196 cd04795 SIS SIS domain. SIS (S 23.4 47 0.0012 13.2 4.3 12 99-110 44-55 (87)
197 PRK07889 enoyl-(acyl carrier p 23.3 47 0.0012 13.2 5.2 40 29-68 3-42 (256)
198 KOG0058 consensus 22.9 48 0.0012 13.1 5.4 66 253-321 450-524 (716)
199 pfam01695 IstB IstB-like ATP b 22.9 48 0.0012 13.1 3.8 129 10-167 29-160 (178)
200 KOG0890 consensus 22.8 48 0.0012 13.1 1.6 164 151-321 1920-2107(2382)
201 TIGR01788 Glu-decarb-GAD gluta 22.8 33 0.00084 14.3 0.7 17 254-270 308-324 (493)
202 TIGR03404 bicupin_oxalic bicup 22.8 44 0.0011 13.4 1.4 50 251-302 179-236 (367)
203 KOG2795 consensus 22.3 40 0.001 13.7 1.1 38 264-303 189-226 (372)
204 PRK11705 cyclopropane fatty ac 22.3 49 0.0013 13.1 7.0 19 296-314 231-251 (383)
205 PRK07847 amidophosphoribosyltr 22.2 50 0.0013 13.1 3.1 12 49-60 108-119 (489)
206 cd05803 PGM_like4 This PGM-lik 22.1 50 0.0013 13.0 9.6 90 10-120 14-106 (445)
207 cd02956 ybbN ybbN protein fami 21.6 51 0.0013 13.0 4.0 26 289-314 70-96 (96)
208 cd00727 malate_synt_A Malate s 21.6 51 0.0013 13.0 2.3 31 34-69 67-97 (511)
209 pfam10055 DUF2292 Uncharacteri 21.5 51 0.0013 13.0 3.0 19 285-303 15-33 (38)
210 PRK06079 enoyl-(acyl carrier p 21.4 52 0.0013 12.9 5.2 43 29-72 3-45 (252)
211 COG1077 MreB Actin-like ATPase 21.0 52 0.0013 12.9 5.3 35 31-65 99-134 (342)
212 pfam08643 DUF1776 Fungal famil 20.8 53 0.0013 12.9 4.5 39 32-72 2-40 (296)
213 PRK11637 hypothetical protein; 20.8 53 0.0014 12.9 3.4 17 45-61 99-115 (404)
214 PRK06505 enoyl-(acyl carrier p 20.7 53 0.0014 12.8 5.2 42 29-71 3-44 (271)
215 KOG4529 consensus 20.7 53 0.0014 12.8 2.6 57 100-156 106-162 (404)
216 PRK04165 acetyl-CoA decarbonyl 20.6 53 0.0014 12.8 11.9 302 8-358 99-437 (454)
217 PRK12582 acyl-CoA synthetase; 20.5 54 0.0014 12.8 5.8 48 14-65 86-133 (622)
218 PRK11617 endonuclease V; Provi 20.4 54 0.0014 12.8 2.1 37 194-231 4-40 (223)
219 PRK13262 ureE urease accessory 20.4 54 0.0014 12.8 2.9 19 221-239 45-63 (231)
220 PRK09089 consensus 20.4 54 0.0014 12.8 7.9 49 14-66 39-87 (517)
No 1
>pfam02073 Peptidase_M29 Thermophilic metalloprotease (M29).
Probab=100.00 E-value=0 Score=940.75 Aligned_cols=402 Identities=43% Similarity=0.745 Sum_probs=398.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf 99999999999987313479976999816535899999999999828988689872748989976059878986243367
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWF 92 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~ 92 (418)
+++|+|||+++|++|+||||||.|+|++++++.||+|+|+++||++||++|++.|+|+.++|.+|++++++||+++|+|+
T Consensus 3 ~~~l~kyA~llV~~glnvQ~Gq~VlI~a~~~a~~l~r~l~~~ay~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~P~~~ 82 (404)
T pfam02073 3 DERLEKYAELLVKVGVNVQKGQTVLISAPVEAAPLVRALVEEAYEAGAKNVVVEWSDDEITRARLEHAPEEQFEEFPEWE 82 (404)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHH
T ss_conf 58999999999995726799998999955753999999999999759997579827779999998659987862385555
Q ss_pred HHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHH
Q ss_conf 99999998479789998159732430799889998889889998999999845887359996599899987368999778
Q gi|255764478|r 93 CEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPI 172 (418)
Q Consensus 93 ~~~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~ 172 (418)
.+.+.+++++++++|+|.++||.+|+++||+|+++++++++++++.++++++.++++|||+++||++|||+||| +++|
T Consensus 83 ~~~~~~~~e~~~a~I~I~~~np~~l~~vd~~ki~~~~kA~~~a~~~~~~~~~~~~~~W~i~~~Pt~~wA~~vfp--~a~~ 160 (404)
T pfam02073 83 AEGMLELAEEGDAFISIRGENPDLLADVDPERIAAYQKARGPALKPRRSATMSNKVSWCVVAYPTPAWAQKVFP--QAGM 160 (404)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCC--CHHH
T ss_conf 79999999709989998459927755999899999999999998999998744874448993489899976489--5566
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEECCCCCCCCCCCCCCC
Q ss_conf 99999999999974266597999999999999999973016847999976996499995588262278860258971468
Q gi|255764478|r 173 AIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNP 252 (418)
Q Consensus 173 s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w~~~~~~~~~G~~~~~ 252 (418)
++++||++||++||+|++|||++|++|.+.+++++++||+++|++|||++|||||+|+++++|.|.++++++.+|..|.+
T Consensus 161 a~e~l~d~if~a~~ld~~dPv~~W~~~~~~l~~~~~~Ln~~~~~~lh~~~~GTDLtv~l~~~~~w~~~~~~~~~G~~~~~ 240 (404)
T pfam02073 161 AVEALWDFIFKAVRLDEEDPVAAWEAHDEKLKKKVDILNEKRFKKLHYKAPGTDLTVSLPGRHAWNGGGSKNKDGVEFIA 240 (404)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCEEECCCCCCCCCCCCCC
T ss_conf 79999999999985478886999999999999999997447961899987984799980898379457544567875769
Q ss_pred CCCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 67863169513147341899970033035402268699997889999985437999998864289852687999866862
Q gi|255764478|r 253 NIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLNKILDIDEGARRLGEVALVPHSS 332 (418)
Q Consensus 253 NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~d~~a~~igE~~ig~n~~ 332 (418)
|||+|||||||++++|||+|++|+|++|+|+++++|+|+||+|+||+++|++|+++|+++|++||||+||||||||+|++
T Consensus 241 NiPt~EVFtaP~~~~v~G~v~~~~Pl~~~G~~i~~~~l~Fe~GkvV~~~A~~g~e~L~~ll~tDeGAr~lGEvAl~~~~s 320 (404)
T pfam02073 241 NMPTEEVFTAPVKDSVEGTVTSTKPLSYQGNLIEGIRLTFEDGKVVDASAEKGEEVLKKLLDTDEGARYLGEVALVPNPS 320 (404)
T ss_pred CCCCCCEEECCCCCCEEEEEEECCCEEECCEEEEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf 99985346132115141699979643689998755799997989999885787899999863597754753799966874
Q ss_pred CHHHHCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCCCEEEEEE
Q ss_conf 00110120033232057526412267750003676678834432069850124587996788199999817995999886
Q gi|255764478|r 333 LLSKMNTLFYDTLFDENAASHIAFGQCYSKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMR 412 (418)
Q Consensus 333 ~i~~~~~l~~n~L~DEk~~~H~A~G~~y~~~~~~~~~~~~~~~~~~g~n~S~~H~D~~~~~~~i~vdgi~~dG~~~~i~~ 412 (418)
|||+++++|||||||||++||||||+|||+|++||.+|+++++.++|.|+|++||||||++++|+|||+++||++++|||
T Consensus 321 pis~~~~~~~ntLfDEn~s~HlAlG~aYp~~~~~g~~~~~ee~~~~G~N~S~iH~D~m~g~~~~~i~g~~~dG~~~~i~~ 400 (404)
T pfam02073 321 PISNIGIIFYNTLFDENASCHLALGRAYPECIEGGKEMSDEELKAGGGNDSAVHVDFMIGSGEIDIDGITKDGTREPIFR 400 (404)
T ss_pred HHHHHCCHHHHHEEECCCCCCEECCCCCHHHHCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf 67663212234305558871340676663332286336888897558856504798862898369999966997888874
Q ss_pred CCEE
Q ss_conf 7845
Q gi|255764478|r 413 GGEW 416 (418)
Q Consensus 413 ~G~~ 416 (418)
||+|
T Consensus 401 ~G~~ 404 (404)
T pfam02073 401 NGNF 404 (404)
T ss_pred CCCC
T ss_conf 8919
No 2
>COG2309 AmpS Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=705.67 Aligned_cols=380 Identities=43% Similarity=0.715 Sum_probs=365.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99999999998731347997699981653589999999999982898868987274898997605987898624336799
Q gi|255764478|r 15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCE 94 (418)
Q Consensus 15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~ 94 (418)
+|+|||+++|++|+|+||||+|+|+++..+.+|+|++++++|++||.+|.+.|.|+++++.+|..++++.|++.|+|..+
T Consensus 3 ~l~~~Ael~v~~~i~~q~g~~v~i~~~~~a~~l~~~i~~~ay~aGa~~V~~~~~d~~~~~~~~~~a~~e~~~~~~~~~~~ 82 (385)
T COG2309 3 KLEKYAELLVKVGINLQPGQKVVISAPVDALPLVRLIVKEAYEAGARPVKVCLGDPEVARAVYTLAPDEEFEEIPEWEAA 82 (385)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCHHHHCCCCHHHHH
T ss_conf 28999999998460458998399967564699999999999985333143010783055565506833442444289999
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHH
Q ss_conf 99999847978999815973243079988999888988999899999984588735999659989998736899977899
Q gi|255764478|r 95 GLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAI 174 (418)
Q Consensus 95 ~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~ 174 (418)
.+.++.....+++.+.+.+ ++...+|.|+++++++....+++++..++.++++||++++|+++|||++|| .++
T Consensus 83 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~va~~~ka~~~~~~~~~~~~~~~~~~Wtv~~~p~~~~A~~v~~-----~~~ 155 (385)
T COG2309 83 AMEEADANGAARLPINTEG--LLDEEDPAKVAAAQKAGAKAVKPVRISISSNKVSWTVVRYPAPSWAKRVFP-----EAV 155 (385)
T ss_pred HHHHHHHCCEEECCCCCCC--CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH-----HHH
T ss_conf 9764421434532555543--346788178999987504012678998623666259983378779987502-----305
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CCEEEEEECCCCEECCCCCCCCCCCCCCCC
Q ss_conf 9999999999742665979999999999999999730168479999769-964999955882622788602589714686
Q gi|255764478|r 175 AKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGP-NTSLKVGLAEGHRWSGGSSIAQNGIMCNPN 253 (418)
Q Consensus 175 ~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~-gTDLt~~l~~~~~w~~~~~~~~~G~~~~~N 253 (418)
..|||++|++|++|. |++|.+.|++++++||++ .+||+++| ||||||+++++|.|.++++.+..| .+|
T Consensus 156 ~~~~d~i~~a~~~D~------w~~~~~~l~~~ae~Ln~~--~~Vh~~tp~gTDLt~~l~~~~~~~~~g~~~~~~---~~N 224 (385)
T COG2309 156 AKLEDFIFRAVRVDE------WEEHSALLEKLAEILNEA--SAVHITTPGGTDLTFGLAGRHAWNDAGSVNKGG---NAN 224 (385)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCC--CEEEEECCCCCEEEEECCCCEEECCCCCCCCCC---CCC
T ss_conf 662999998751578------999999999999983887--579995899750699758960651677668787---788
Q ss_pred CCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 78631695131473418999700330354022686999978899999854379999988642898526879998668620
Q gi|255764478|r 254 IPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLNKILDIDEGARRLGEVALVPHSSL 333 (418)
Q Consensus 254 lP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~d~~a~~igE~~ig~n~~~ 333 (418)
||+|||||+|++++|||+++||+|++|+|+++++|+|+||||+||+++|+++++.|+.++++|||||||||||||+
T Consensus 225 mPtgEVFtaP~~~sv~G~V~~~~Pl~~~G~lie~i~l~FedG~VV~~sa~~~E~vl~~~ldTDegAr~LGE~alg~---- 300 (385)
T COG2309 225 MPTGEVFTAPHEDSVNGVVVFDKPLSYQGTLIEGIRLTFEDGKVVEISAEKGEEVLKRLLDTDEGARRLGELALGP---- 300 (385)
T ss_pred CCCCCEEECCCCCCCCEEEEECCCCCCCCEEEECEEEEEECCEEEEEECCCCHHHHHHHHHCCCCHHHEEEEEEEC----
T ss_conf 9975357666657643599978678858776604499997987999753667899988763382603156788875----
Q ss_pred HHHHCCCCCCEEEECCCCC--CEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCCCEEEEE
Q ss_conf 0110120033232057526--41226775000367667883443206985012458799678819999981799599988
Q gi|255764478|r 334 LSKMNTLFYDTLFDENAAS--HIAFGQCYSKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIM 411 (418)
Q Consensus 334 i~~~~~l~~n~L~DEk~~~--H~A~G~~y~~~~~~~~~~~~~~~~~~g~n~S~~H~D~~~~~~~i~vdgi~~dG~~~~i~ 411 (418)
+++++++|||||||||++| |||||+|||+|+++|..| .++....|.|.|.+|+|+||++++|+|||+++||..+++|
T Consensus 301 ~~~~~~l~~NiLfDEka~~t~HiAiG~aY~~~~~~g~~~-~~~~~~~g~~~s~~h~D~migs~~v~iDG~~~~~~g~~v~ 379 (385)
T COG2309 301 NSPIARLFYNILFDEKASGTVHIAIGSAYPFNVEGGAEM-QNESAIHGDNVSDVHVDSMIGSSEVYIDGVLVDGNGEPVF 379 (385)
T ss_pred CCCCCEEECCCEEECCCCCCEEEECCCCCCCCCCCCCCH-HHHHHCCCCCCCCEEEECCCCCCEEEEEEEEECCCCCEEE
T ss_conf 577674522201213447841065323565434554210-1201004676643244102478617871068527877760
Q ss_pred ECCEEC
Q ss_conf 678454
Q gi|255764478|r 412 RGGEWA 417 (418)
Q Consensus 412 ~~G~~~ 417 (418)
++|+|+
T Consensus 380 ~~g~~a 385 (385)
T COG2309 380 RKGEWA 385 (385)
T ss_pred CCCCCC
T ss_conf 377769
No 3
>pfam10575 consensus
Probab=92.39 E-value=0.18 Score=30.17 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=48.6
Q ss_pred CCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEC--CCCHHH---HHHHHHHHHHHCCCCCCEEEE
Q ss_conf 520155406999999999999998731347997699981--653589---999999999982898868987
Q gi|255764478|r 2 DKSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMA--PVSALP---LARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 2 ~~~~~~~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~--d~~a~~---l~ral~~aa~~~GA~~V~v~~ 67 (418)
||++.-+++||.. | -++| ...+|+|.|+-.+|.. .....| ..|.+.-+.|+.|+..|++.-
T Consensus 2 dKKlaIlTCMDtR-L---~elL-p~AlgiknGDakiIKnAG~~I~hPfGsvmRSllvAIYel~veEI~VIG 67 (159)
T pfam10575 2 NKKVLLLTDIEHG-I---EPII-QQVTNIQPENMLTIHSYDSVIVHPYGDIMRSIIIAIYQENVEEIFVVG 67 (159)
T ss_pred CCEEEEEECCCCC-H---HHHH-HHHHCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9569999744235-5---9899-998689986778997079543067614999999999974981899982
No 4
>PRK02947 hypothetical protein; Provisional
Probab=91.44 E-value=0.22 Score=29.53 Aligned_cols=54 Identities=22% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
=+|++-||+.+++ ..+++|||.++|.+....-++...++..|.++|++ |+..-+
T Consensus 89 ~ER~~g~a~~il~-~~~i~~~Dvlii~SnSG~N~~pVE~A~~ak~~G~~-VIaiTS 142 (247)
T PRK02947 89 LERIEGYAKLILD-RYPIRPGDVLIIVSNSGRNAVPIEMALEAKERGAK-VIAVTS 142 (247)
T ss_pred HHCCCCHHHHHHH-HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCE-EEEEEC
T ss_conf 2225509999998-67999998899996787776899999999986996-999966
No 5
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=89.36 E-value=1.8 Score=23.14 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999998731347997699981653589999999999982898
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAG 61 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~ 61 (418)
++++-||+.+++ -.++|+|+.++|.+....-|+--.+.+.+.+.||+
T Consensus 87 Erieg~~~~~l~-~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~ 133 (243)
T COG4821 87 ERIEGYAKLFLH-RLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAK 133 (243)
T ss_pred HHHHHHHHHHHH-HHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCE
T ss_conf 765317777899-96688788899980799898443899999865976
No 6
>TIGR01733 AA-adenyl-dom amino acid adenylation domain; InterPro: IPR010071 This entry represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalysed is aa + ATP to aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called 'A-domains' in that context (for a review, see ). A-domains are almost invariably followed by 'T-domains' (thiolation domains, IPR006163 from INTERPRO) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a 'C-domain' (condensation domain, IPR001242 from INTERPRO) which catalyses the ligation of two amino acid thiol-esters from neighbouring modules. This domain is a subset of the AMP-binding domain, which also hits substrate--CoA ligases and luciferases.; GO: 0016874 ligase activity.
Probab=87.07 E-value=2.5 Score=22.17 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH---------------
Q ss_conf 99999999999873134799769998165358999999999998289886898727489899760---------------
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYK--------------- 78 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~--------------- 78 (418)
.+=+++|+.|+..+-+|++|+.|-|..+=...-++-.| +..|+||-||.+.-.-|.-.+.++.
T Consensus 7 ~~an~LA~~L~~~~ggv~pg~~Va~~~~rs~~~~va~L--AvlKAGaaYVPlDp~~P~~R~~~il~d~~~~~~lt~~~~~ 84 (452)
T TIGR01733 7 ERANRLARHLRAAGGGVGPGDRVAILLERSAELVVAIL--AVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALA 84 (452)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH--HHHHHCCEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 99999999999826888988658998278689999999--9998394851067454189999999852984899766022
Q ss_pred ----------CCCHHHH--HHCCHHHHHHHHHHH----------HCCC-EEEEEECCCCHHHCCCCHHHHHHHHHHHHHH
Q ss_conf ----------5987898--624336799999998----------4797-8999815973243079988999888988999
Q gi|255764478|r 79 ----------YGADYAF--DRVADWFCEGLAKAY----------SDNT-ALLSISGDNPLLLVNEDSDKVSRVNQAYLKA 135 (418)
Q Consensus 79 ----------~a~~e~l--~~~p~~~~~~~~~~~----------~~~~-a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~ 135 (418)
....++. .....-......... -... ||+.-+|-.+-.-|+|.-..-+..+ .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~AYvIyTSGSTG~PKGV~v~Hr~~~n-----~ 159 (452)
T TIGR01733 85 ERLAGLVLEEVILLDPLELAALADAPAPPPPAARTDSLPPLLSGPDDLVAYVIYTSGSTGRPKGVVVTHRSLVN-----L 159 (452)
T ss_pred HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHH-----H
T ss_conf 11001354102423555432334456544455567777766778888258999757888855307721078999-----9
Q ss_pred HHHHHH-HHHC-----CCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899999-9845-----887359996599899987368999778999999999999-742665979999999999999999
Q gi|255764478|r 136 YKPALE-RISN-----FDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSV-SRAHCIDPIAAWAEHNNFLHQKSQ 208 (418)
Q Consensus 136 ~k~~~~-~~~~-----~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a-~~~d~~Dpv~~w~~~~~~~~~~~~ 208 (418)
...... +..- ..-+ +.++. ...-++|++++|-..+.. |.+--.+... ..........
T Consensus 160 ~~~~~~~~~~~~~~~~~~dr--~l~~~----------~~~FD~Sv~e~f~~L~~Ga~l~~~~~~~~----~~~~~~~~~~ 223 (452)
T TIGR01733 160 LAWLARLRYGLDRGNGPDDR--VLQFA----------SLSFDASVEEIFGALLAGATLVVPPEDEE----RLDDAALLAA 223 (452)
T ss_pred HHHHHHHHCCCCCCCCCCCE--EEECC----------CCCCHHHHHHHHHHHHHCCEEEEECCHHH----HCCHHHHHHH
T ss_conf 99854330245789861022--43106----------65102679999999984957875184232----0532678999
Q ss_pred HHCCCCEEEEEEE
Q ss_conf 7301684799997
Q gi|255764478|r 209 WLSQRDFAEIRFS 221 (418)
Q Consensus 209 ~Ln~~~~~~i~~~ 221 (418)
+++..+...++.+
T Consensus 224 ~~~~~~vT~~~~t 236 (452)
T TIGR01733 224 LIAEGPVTVLSLT 236 (452)
T ss_pred HHHHCCCCEEEEC
T ss_conf 9984497679846
No 7
>PRK05620 acyl-CoA synthetase; Validated
Probab=81.77 E-value=4.1 Score=20.61 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+-+++|..|.+ .++|++||.|.|..+-..+- +.++ -++.++||-+|.++..
T Consensus 46 ~~~~~lA~~L~~-~lGv~~GDrVai~l~n~~e~-v~~~-lA~~~~Gav~vpln~~ 97 (571)
T PRK05620 46 ARAAALAHALHD-SFGITGDQRVASMLYNCAEH-LEVL-FAVACMGAVFNPLNKQ 97 (571)
T ss_pred HHHHHHHHHHHH-CCCCCCCCEEEEECCCCHHH-HHHH-HHHHHHCEEEEEECCC
T ss_conf 999999999987-60969989999993880999-9999-9999859699706777
No 8
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=75.39 E-value=5.7 Score=19.63 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=30.5
Q ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 9998731347997699981653589999999999982898868987274
Q gi|255764478|r 22 VALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 22 llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
+.+. ++++++|+.|++.+-.- -|...+...+||+||++....+
T Consensus 61 lal~-~l~i~~gdeVivp~~tf-----~at~~ai~~~Ga~pvfvDid~~ 103 (375)
T PRK11706 61 MAAL-LLDIQPGDEVIMPSYTF-----VSTANAFVLRGAKIVFVDIRPD 103 (375)
T ss_pred HHHH-HCCCCCCCEEEECCCCH-----HHHHHHHHHCCCEEEEEEECCC
T ss_conf 9999-86988939999899664-----9999999983996999971687
No 9
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=74.82 E-value=6.5 Score=19.22 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
.+.+++|..|.. .+|++||.|.|..+-..+-+ .++. ++.++||-||...+...
T Consensus 56 ~~~~~lA~~L~~--~Gv~~GdrV~l~~~n~~e~v-~~~l-A~~~~Gavpv~~~~~~~ 108 (536)
T PRK10946 56 QASDNLACSLRR--QGIKPGETALVQLGNVAEFY-ITFF-ALLKLGVAPVNALFSHQ 108 (536)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH-HHHH-HHHHHCEEEECCCCCCC
T ss_conf 999999999997--59699899999918839999-9999-99970989957888756
No 10
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=73.37 E-value=7 Score=18.99 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHH
Q ss_conf 9987313479976999816535899999999999828988689872748989976059878986
Q gi|255764478|r 23 ALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFD 86 (418)
Q Consensus 23 lV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~ 86 (418)
.+..-.++|+||+|||..-... +..+...-|...||+ |+..-.+++-.+.....+.+..+.
T Consensus 131 ~l~~~~~~~~g~~vLi~gaaGg--VG~~avQlAk~~Ga~-Vi~t~~s~~k~e~~~~lGA~~vi~ 191 (327)
T PRK10754 131 LLRKTYEIKPDEQFLFHAAAGG--VGLIACQWAKALGAK-LIGTVGSAQKAQRALKAGAWQVIN 191 (327)
T ss_pred HHHHCCCCCCCCEEEEECCCCC--CCHHHHHHHHHCCCE-EEEEECCHHHHHHHHHCCCCEEEE
T ss_conf 7653137899999999817761--126899999986999-999989899999999669999998
No 11
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=73.05 E-value=2.9 Score=21.67 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=32.8
Q ss_pred HHHHHCCCCCCEEEEECCCCHHHH-HHHHHHHHHHCCCCCC
Q ss_conf 987313479976999816535899-9999999998289886
Q gi|255764478|r 24 LQVGVNIQEGQHLIVMAPVSALPL-ARLITKHAYMLGAGLV 63 (418)
Q Consensus 24 V~~~lniqkGe~VlI~~d~~a~~l-~ral~~aa~~~GA~~V 63 (418)
++.+..|+|||+|+|.=|+.+.-. ++...++....|+..|
T Consensus 102 LRrgF~v~pGek~v~vEDvvTTGGS~~e~~~~i~~~GG~vv 142 (205)
T TIGR01367 102 LRRGFEVKPGEKVVVVEDVVTTGGSLLEAIKAIEELGGQVV 142 (205)
T ss_pred ECCCEEECCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEE
T ss_conf 11120336997799996211047448999999985798279
No 12
>PRK00509 argininosuccinate synthase; Provisional
Probab=72.57 E-value=7.3 Score=18.86 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=27.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCC-CEEEEC
Q ss_conf 76999816535899999999999828988-689872
Q gi|255764478|r 34 QHLIVMAPVSALPLARLITKHAYMLGAGL-VSVFYK 68 (418)
Q Consensus 34 e~VlI~~d~~a~~l~ral~~aa~~~GA~~-V~v~~~ 68 (418)
|.+-+++|..+.+=..++.+.|.+.||.. +++...
T Consensus 29 eVia~~~d~Gq~~d~~~i~~kA~~~GA~~~~v~D~r 64 (398)
T PRK00509 29 EVVAFTADVGQGEELEPIREKALASGASEIYVEDLR 64 (398)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 899999979887788999999998299789996309
No 13
>pfam04015 DUF362 Domain of unknown function (DUF362). Sometimes present in iron-sulphur proteins.
Probab=72.38 E-value=7.2 Score=18.90 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=29.6
Q ss_pred HHCCCCCCEEEEECCC-----------CHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 3134799769998165-----------35899999999999828988689
Q gi|255764478|r 27 GVNIQEGQHLIVMAPV-----------SALPLARLITKHAYMLGAGLVSV 65 (418)
Q Consensus 27 ~lniqkGe~VlI~~d~-----------~a~~l~ral~~aa~~~GA~~V~v 65 (418)
|+..|||++|||.-.. ..-++++++++.+.++||+.++.
T Consensus 29 Gm~~kpG~kVLIKPNll~~~~pe~~vtThP~vV~Avv~~~~e~Ga~i~vg 78 (262)
T pfam04015 29 GKSNPPGDRVLLKPNFLKANSPERPCITHPEVVSAVVDVLKEQGAEVFMG 78 (262)
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88789999899858868888987677588899999999999779978998
No 14
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=69.60 E-value=8.5 Score=18.42 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=61.7
Q ss_pred CEEEEEECCCCEECCCCCCCCCCCCCCCCCCCC-CEEEEEECC-CEEEEEEEEE-EEECC-CC-----E---ECCEEEEE
Q ss_conf 649999558826227886025897146867863-169513147-3418999700-33035-40-----2---26869999
Q gi|255764478|r 225 TSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTE-EVFTAPHAR-RVEGYATSTK-PLVYQ-GM-----L---IENIRVRF 292 (418)
Q Consensus 225 TDLt~~l~~~~~w~~~~~~~~~G~~~~~NlP~G-EVftaP~~~-~vnG~i~~d~-p~~~~-G~-----~---~~~~~l~f 292 (418)
-.+-++.-++....+-.-...-|.. .+.|+| |+++.|.=+ +..|+|+.+- +.+.. |+ . -++-++..
T Consensus 36 Q~vQ~~g~~~Et~~D~er~q~yGf~--S~ppaGse~vvv~lGG~rShgviv~~~~~syR~~GL~aGeT~iY~~eG~~i~L 113 (203)
T COG4384 36 QNVQLSGLAGETLQDLERLQEYGFA--SVPPAGSEAVVVPLGGKRSHGVIVVSQHGSYRITGLKAGETVIYNHEGAKIVL 113 (203)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCC--CCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEE
T ss_conf 8899855786044304779865864--68999871899965886320399996388611136567746888225748997
Q ss_pred ECCEEEEEECCCHHHHHHHHHHCCCCC---CEEEEEEEECCCCCHHHHCCCCCCEEEECC
Q ss_conf 788999998543799999886428985---268799986686200110120033232057
Q gi|255764478|r 293 DQGRVVEASASKGEEMLNKILDIDEGA---RRLGEVALVPHSSLLSKMNTLFYDTLFDEN 349 (418)
Q Consensus 293 ~~G~vv~~~a~~~~~~l~~~l~~d~~a---~~igE~~ig~n~~~i~~~~~l~~n~L~DEk 349 (418)
++|++++++|+.-. +..+.+. ..+.+|-.. +.+-+.+.||.--|=.
T Consensus 114 teg~~Ie~~ck~~~------v~a~~~v~v~Ap~v~~t~~-----~t~~~~i~GN~~~~v~ 162 (203)
T COG4384 114 TEGGIIEADCKTLT------VNAATGVKVNAPLVEFTAV-----LTPQGQINGNGGMAVE 162 (203)
T ss_pred CCCCEEEEECCEEE------EECCCCEEECCCEEEEEEE-----ECCCEEECCCCEEEEC
T ss_conf 25968998561789------7458852663641588777-----5554388165115622
No 15
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=69.42 E-value=7.1 Score=18.96 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHCCCCCCEEEEECCCCH--HHHHHHHHH
Q ss_conf 9987313479976999816535--899999999
Q gi|255764478|r 23 ALQVGVNIQEGQHLIVMAPVSA--LPLARLITK 53 (418)
Q Consensus 23 lV~~~lniqkGe~VlI~~d~~a--~~l~ral~~ 53 (418)
+=++++.+.+||.+=|-.+-.+ .-+.|-++-
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat 50 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT 50 (245)
T ss_pred HHHEEEEECCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 665257850664999876898871237999998
No 16
>PTZ00165 aspartyl protease; Provisional
Probab=68.98 E-value=8.5 Score=18.42 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCEEE--EEECCCCEECCCCCCCC
Q ss_conf 99999999973016847999976996499--99558826227886025
Q gi|255764478|r 200 NNFLHQKSQWLSQRDFAEIRFSGPNTSLK--VGLAEGHRWSGGSSIAQ 245 (418)
Q Consensus 200 ~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt--~~l~~~~~w~~~~~~~~ 245 (418)
...++.+..++|..-+-+|.+=+|.-.++ |..+..-.|.....+..
T Consensus 140 ~~~~~~LlNf~NaQYyGeI~IGTPPQ~FkVIFDTGSSNLWVPS~~C~s 187 (505)
T PTZ00165 140 TNLQQDLLNFENSQYFGEIEVGTPPKEFVVVFDTGSSQLWIPSKECLN 187 (505)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCEECCCCCCC
T ss_conf 578999765105624787665799961489974887771154576897
No 17
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=67.40 E-value=9.3 Score=18.12 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=50.8
Q ss_pred HCCCCCCEEEEECCCC-----HHHHHHHHHHHHHHCCCCCCEEEE--CCHHHH----HHHHH----------CCCHHHHH
Q ss_conf 1347997699981653-----589999999999982898868987--274898----99760----------59878986
Q gi|255764478|r 28 VNIQEGQHLIVMAPVS-----ALPLARLITKHAYMLGAGLVSVFY--KDSEAT----LMLYK----------YGADYAFD 86 (418)
Q Consensus 28 lniqkGe~VlI~~d~~-----a~~l~ral~~aa~~~GA~~V~v~~--~d~~~~----r~~~~----------~a~~e~l~ 86 (418)
-.+.+++.++|.++.. ..+.++++.++|.++||..|-.+. ..+.++ +..|. |.--+.++
T Consensus 7 r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~ 86 (347)
T COG2089 7 RTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAE 86 (347)
T ss_pred EEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 43358999579964145565758999999999997386655532035631004033577655555656663999999844
Q ss_pred HCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 2433679999999847978999
Q gi|255764478|r 87 RVADWFCEGLAKAYSDNTALLS 108 (418)
Q Consensus 87 ~~p~~~~~~~~~~~~~~~a~i~ 108 (418)
...+|..+..+.+-+.+-.+++
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~S 108 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFS 108 (347)
T ss_pred CCHHHHHHHHHHHHHCCEEEEE
T ss_conf 9999999999999872938981
No 18
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase; InterPro: IPR011963 Siderophores are low molecular weight iron-chelating compounds synthesised by many bacteria to aid in the aquisition of this vital trace element . Proteins in this entry are adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores. These proteins belong to the AMP-binding family and are mostly thought to activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. One of these proteins, however, is believed to differ in function, activating salicylate rather than DHB. The crystal structure of 2,3-dihydroxybenzoate-AMP ligase (P40871 from SWISSPROT) from Bacillus subtilis has been examined . This protein is composed of a large N-terminal domain (~420 aa) and a more compact C-terminal domain (~110 aa), with an overall "hammer-and-anvil" fold similar to that of firefly luciferase . The active site is located in a deep compartment located at the interface of the domains, with a p-loop thought to be involved in catalysis located at the entrance to the cavity. Relatively little conformational change was observed during catalysis.; GO: 0008668 (23-dihydroxybenzoyl)adenylate synthase activity, 0019290 siderophore biosynthetic process.
Probab=66.58 E-value=9.7 Score=18.01 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+.+++|--+-+ +.||+||+|+|+-+-.++=...- =|..|+|+-||.--+
T Consensus 56 ~~~~~LA~~l~~--~GI~~GD~a~VQLpNiAEFYi~F--FALlk~G~~Pv~ALf 105 (534)
T TIGR02275 56 QRADNLAAGLTK--LGIKKGDTAVVQLPNIAEFYIVF--FALLKLGVAPVLALF 105 (534)
T ss_pred HHHHHHHHHHHH--HCCCCCCEEEEECCCHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf 999999999997--04677886888378657899999--999852010222315
No 19
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189 Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=66.30 E-value=9.8 Score=17.97 Aligned_cols=53 Identities=19% Similarity=0.444 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCC-----CHHHHHHHH-------------HH-HHHHCCCCCCEEEECCHH
Q ss_conf 999999999873134799769998165-----358999999-------------99-999828988689872748
Q gi|255764478|r 16 LEKLAKVALQVGVNIQEGQHLIVMAPV-----SALPLARLI-------------TK-HAYMLGAGLVSVFYKDSE 71 (418)
Q Consensus 16 L~kyA~llV~~~lniqkGe~VlI~~d~-----~a~~l~ral-------------~~-aa~~~GA~~V~v~~~d~~ 71 (418)
.=-|+.|. ..+ .||+||+|||.... .+.-|++++ .+ ++.++||. +-++|++++
T Consensus 130 fTVW~NLF-~~g-~L~~GEtvLiHGGaSGIGttAIqLAKA~Ga~V~~TaGS~eK~~~a~~~LGAd-~aINY~e~D 201 (334)
T TIGR02824 130 FTVWSNLF-QRG-GLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCATACEALGAD-IAINYREED 201 (334)
T ss_pred HHHHHHHH-HHC-CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCE-EEEECCCCC
T ss_conf 88888687-221-1378972899713673679999999856975999828989999999860980-786077734
No 20
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=65.27 E-value=10 Score=17.84 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
+.+.+++|..|.. .+|++|+.|.|..+...+ ++.+ +-++.++||-+|.+...
T Consensus 57 ~~~~~~lA~~L~~--~Gv~~GdrVai~~~n~~e-~v~~-~lA~~k~Gav~vpl~~~ 108 (548)
T PRK06087 57 DHAASCLANWMLA--KGIESGDRIAFQLPGWCE-FTVI-YLACLKTGAVSVPLLPS 108 (548)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHH-HHHHHHHCEEEEEECCC
T ss_conf 9999999999997--696884999999589799-9999-99999839099967899
No 21
>PRK07470 acyl-CoA synthetase; Validated
Probab=64.42 E-value=11 Score=17.74 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
.+.+++|..|.. .++++|+.|.|..+...+-++ ++ -++.++||-+|.+....
T Consensus 40 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e~~~-~~-lA~~~~Gav~vpl~~~~ 91 (528)
T PRK07470 40 ARVDALAAALAA--RGLRKGDRILVHSRNCNQMFE-SM-FAAFRLGAVWVPTNFRQ 91 (528)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH-HH-HHHHHHCEEEEECCCCC
T ss_conf 999999999997--595997999999289799999-99-99998494998039879
No 22
>PRK09274 peptide synthase; Provisional
Probab=64.11 E-value=11 Score=17.70 Aligned_cols=49 Identities=20% Similarity=0.091 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999999873134799769998165358999999999998289886898
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
.+.+++|..|.. .+|++|+.|.|..+... +++.++. ++.++||-+|.++
T Consensus 50 ~~~~~lA~~L~~--~Gv~~GdrV~v~~~n~~-e~v~~~l-A~~~~Gav~vpl~ 98 (555)
T PRK09274 50 ARSDAIAHGLNA--HGIGRGMRAVLMVTPSL-EFFALTF-ALFKAGAVPVLVD 98 (555)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCH-HHHHHHH-HHHHHCEEEEEEC
T ss_conf 999999999997--59599899999948929-9999999-9998493999628
No 23
>PRK05857 acyl-CoA synthetase; Validated
Probab=63.60 E-value=11 Score=17.63 Aligned_cols=54 Identities=15% Similarity=-0.012 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
+.+.+++|..|.. .++++|+.|.|..+...+ ++.++. ++.++||-+|.+...-+
T Consensus 40 ~~~~~~lA~~L~~--~Gi~~GdrV~l~~~ns~e-~~~a~l-a~~~~Gav~vpi~~~~~ 93 (532)
T PRK05857 40 VAEVGGLAADLRA--QSVSRGSRVLVISDNGPE-TYLSVL-ACAKLGAIAVMADGNLP 93 (532)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHHHH-HHHHHCEEEEEECCCCC
T ss_conf 9999999999997--595997999999488499-999999-99984949994289899
No 24
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=63.55 E-value=11 Score=17.63 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=27.6
Q ss_pred HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 73134799769998165358999999999998289886898727
Q gi|255764478|r 26 VGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 26 ~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
.+++++||+.|++.+-.- -+...++..+||+||++.+..
T Consensus 66 ~al~i~~gdeVi~p~~tf-----~at~~ai~~~Ga~pvf~Did~ 104 (379)
T PRK11658 66 MALGIGPGDEVITPSQTW-----VSTLNMIVLLGATPVMVDVDR 104 (379)
T ss_pred HHCCCCCCCEEEECCCCH-----HHHHHHHHHCCCEEEEECCCC
T ss_conf 986988839999899556-----999999998199899745745
No 25
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=62.99 E-value=11 Score=17.56 Aligned_cols=55 Identities=20% Similarity=0.086 Sum_probs=34.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC--CC-------------HHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 1554069999999999999987313479976999816--53-------------58999999999998289886898
Q gi|255764478|r 5 ISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAP--VS-------------ALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 5 ~~~~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d--~~-------------a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
+|+-+..++-++++..+ .+|+|+.|+|.-. +. ...-.+..++++.++||.||++.
T Consensus 45 rSsrsF~~eGr~~~vl~-------~~~~GD~v~IqFGhND~~~~~~~~~~~~~ty~~nL~~~i~~~r~~ga~pIL~T 114 (198)
T cd01821 45 RSSRSFRDEGRWDAILK-------LIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVT 114 (198)
T ss_pred CCHHHHHHCCCHHHHHH-------HCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 61155563575999998-------54889889998356667888988768688999999999999997599899975
No 26
>PRK08316 acyl-CoA synthetase; Validated
Probab=62.22 E-value=12 Score=17.47 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|.. .+|++|+.|.|..+...+-++ + .-++.++||-+|.+...
T Consensus 44 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~ns~e~~~-~-~lA~~~~Gav~vpl~~~ 94 (525)
T PRK08316 44 AAVDRAAAALLD--LGLKKGDRVAALAHNSDAYAL-L-RFACARAGAVLVPVNFM 94 (525)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH-H-HHHHHHHCEEEEEECCC
T ss_conf 999999999997--394986999999089899999-9-99999859199977898
No 27
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=61.41 E-value=12 Score=17.37 Aligned_cols=62 Identities=15% Similarity=0.310 Sum_probs=36.2
Q ss_pred EEEECCCEEEEEEEEEEE-ECCC----CEECCEEEEEECCEEEEEECCCHH--HHHHHH----HHCCCCCCEEEE
Q ss_conf 513147341899970033-0354----022686999978899999854379--999988----642898526879
Q gi|255764478|r 261 TAPHARRVEGYATSTKPL-VYQG----MLIENIRVRFDQGRVVEASASKGE--EMLNKI----LDIDEGARRLGE 324 (418)
Q Consensus 261 taP~~~~vnG~i~~d~p~-~~~G----~~~~~~~l~f~~G~vv~~~a~~~~--~~l~~~----l~~d~~a~~igE 324 (418)
++| ..+.|.|.|..-. .|.+ .+.+++.|+++.|+.+-+-|+.|. -.|-++ +....|.-++..
T Consensus 3 ~~p--~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg 75 (226)
T cd03248 3 LAP--DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG 75 (226)
T ss_pred CCC--CCCEEEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 064--3455599999889988999999437453899829999999999998499999999645467887899999
No 28
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=61.19 E-value=12 Score=17.35 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 7313479976999816535899999999999828988689872
Q gi|255764478|r 26 VGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 26 ~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
..+++++|+.|++.+-.- -+.+.++..+||+||++...
T Consensus 62 ~al~~~~gdeVivp~~tf-----~at~~ai~~~Ga~pvf~Dvd 99 (380)
T TIGR03588 62 LALGVGPGDEVWTTPITF-----VATANCALYCGAKVDFVDID 99 (380)
T ss_pred HHCCCCCCCEEEECCCCC-----HHHHHHHHHCCCEEEEEECC
T ss_conf 984999989999678530-----88679999879968998441
No 29
>PRK12406 acyl-CoA synthetase; Provisional
Probab=61.09 E-value=12 Score=17.33 Aligned_cols=52 Identities=19% Similarity=0.090 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
.+.+++|..|.+ ++|++|+.|.|..+...+-++- .-++.++||-+|.++...
T Consensus 20 ~~~~~lA~~L~~--~Gv~~Gd~V~l~~~n~~e~v~~--~lA~~~~Gav~vpl~~~~ 71 (510)
T PRK12406 20 QRAARAAGGLAA--LGVRPGDCVAVLMRNDFAFLEA--AYAAMRLGAYAVPVNWHF 71 (510)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHHH--HHHHHHHCCEEEEECCCC
T ss_conf 999999999997--5959989999990882999999--999998592999879999
No 30
>PRK09620 hypothetical protein; Provisional
Probab=61.08 E-value=11 Score=17.53 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCHH--------------HHHHHHHHHHHHCCCCCCEE
Q ss_conf 99769998165358--------------99999999999828988689
Q gi|255764478|r 32 EGQHLIVMAPVSAL--------------PLARLITKHAYMLGAGLVSV 65 (418)
Q Consensus 32 kGe~VlI~~d~~a~--------------~l~ral~~aa~~~GA~~V~v 65 (418)
+|-+|||++....+ .++.+++++|+.+||..+.+
T Consensus 2 ~GkkVLITaG~T~E~IDpVR~ItN~SSGkmG~aiA~~a~~~GA~Vtli 49 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 998999958887566688456277682399999999999779979999
No 31
>KOG1176 consensus
Probab=60.94 E-value=12 Score=17.32 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+..++|.-|..-++++++||.|.|.++-... .-+++-++...||-...++.
T Consensus 53 ~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~--~~~~~la~~~~Ga~~~~~Np 104 (537)
T KOG1176 53 DRCRRLASALSELGLGIKKGDVVGILAPNTPE--FVELALAVPMAGAVLNPLNP 104 (537)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH--HHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999998647886789889997789889--99999999866874445685
No 32
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=60.43 E-value=12 Score=17.26 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999987313479976999816535899999999999828988
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGL 62 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~ 62 (418)
.+..++|..|. .++|+|||.|.|..+-..+-++ ..-++.++||-.
T Consensus 115 ~~v~rlA~~L~--~~GV~~GDrVai~lpn~~E~vv--a~lA~~kiGAv~ 159 (648)
T PRK00174 115 REVCRFANALK--KLGVKKGDRVAIYMPMIPEAAV--AMLACARIGAIH 159 (648)
T ss_pred HHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHHH--HHHHHHHHCEEE
T ss_conf 99999999999--7396998999998799899999--999999819088
No 33
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=59.90 E-value=13 Score=17.20 Aligned_cols=126 Identities=18% Similarity=0.267 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHCCCCCCEEE--ECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCH
Q ss_conf 8999999999998289886898--72748989976059878986243367999999984797899981597324307998
Q gi|255764478|r 45 LPLARLITKHAYMLGAGLVSVF--YKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDS 122 (418)
Q Consensus 45 ~~l~ral~~aa~~~GA~~V~v~--~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd~ 122 (418)
.+|+.++.+.+.++|=.-|-+. |.-| +-+.|.|...-+| ....+|
T Consensus 189 ~e~i~~~~~~~R~~Gf~SiN~DLIYGLP--------~Qt~esF~~Tl~~-------------------------v~~LnP 235 (462)
T TIGR00538 189 EEMIFELMEKAREAGFESINLDLIYGLP--------KQTKESFEKTLEK-------------------------VAELNP 235 (462)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCC--------CCCHHHHHHHHHH-------------------------HHHCCC
T ss_conf 8999999999986698278742013888--------8786789999999-------------------------853187
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89998889889998999999845887359996599899987368999778999999999999742665979999999999
Q gi|255764478|r 123 DKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNF 202 (418)
Q Consensus 123 ~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~ 202 (418)
+|++.++-|+-+..|+.+.++.. .+-|+ + ++-.+-
T Consensus 236 DRlAvFnyAyvP~vk~~q~k~~~-------~~LPS------------~--------------------------~~KL~I 270 (462)
T TIGR00538 236 DRLAVFNYAYVPWVKPAQRKIPE-------EALPS------------A--------------------------EEKLEI 270 (462)
T ss_pred CEEHHHHHHHHCCHHHHHCCCCH-------HCCCC------------H--------------------------HHHHHH
T ss_conf 70012102221015778502762-------00588------------7--------------------------899999
Q ss_pred HHHHHHHHCCCCEEEE---EEECCCCEEEEEECCCCEECCCCCCCCCCC
Q ss_conf 9999997301684799---997699649999558826227886025897
Q gi|255764478|r 203 LHQKSQWLSQRDFAEI---RFSGPNTSLKVGLAEGHRWSGGSSIAQNGI 248 (418)
Q Consensus 203 ~~~~~~~Ln~~~~~~i---~~~~~gTDLt~~l~~~~~w~~~~~~~~~G~ 248 (418)
++.++..|+++.|+-| |+.-|.=.|-+-.-++-.|.+=-|+|+.+.
T Consensus 271 l~~~I~~L~~~gY~fIGMDHFAkpddELavAqr~geL~RNFQGYTT~~~ 319 (462)
T TIGR00538 271 LEETIAFLTEAGYVFIGMDHFAKPDDELAVAQRKGELHRNFQGYTTKKE 319 (462)
T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999999975797585144577971389999850530005765224897
No 34
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=59.82 E-value=13 Score=17.19 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999999999999873134799769998165358999999999998289886898
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
+.+..++|..|. .++|++||.|.|..+...+- +.+ .-++.++||-+|.+.
T Consensus 80 ~~~~~rlA~~L~--~~GV~~GDrV~i~~pn~~e~-v~a-~lA~~k~Gav~vpl~ 129 (570)
T PRK04319 80 KRLSNKFANVLK--ELGVEKGDRVFIFMPRSPEL-YFA-LLGALKIGAIVGPLF 129 (570)
T ss_pred HHHHHHHHHHHH--HCCCCCCCEEEEECCCHHHH-HHH-HHHHHHHCCEEEEEC
T ss_conf 999999999999--76969899999991882999-999-999998694999308
No 35
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=59.82 E-value=13 Score=17.19 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 37999998864289852687999866
Q gi|255764478|r 304 KGEEMLNKILDIDEGARRLGEVALVP 329 (418)
Q Consensus 304 ~~~~~l~~~l~~d~~a~~igE~~ig~ 329 (418)
...+.+-++++. -||.-.|=+.+.-
T Consensus 190 ~T~~~~~~l~~~-~ga~v~G~~~li~ 214 (238)
T PRK08558 190 ETQRALLELCRQ-AGADVVGVFFLIA 214 (238)
T ss_pred HHHHHHHHHHHH-CCCEEEEEEEEEE
T ss_conf 389999999998-6997999999998
No 36
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=59.51 E-value=13 Score=17.15 Aligned_cols=243 Identities=16% Similarity=0.093 Sum_probs=114.2
Q ss_pred HHHHHHC-CCCCCEEEEE-CCCCH-HHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH
Q ss_conf 9987313-4799769998-16535-8999999999998289886898727489899760598789862433679999999
Q gi|255764478|r 23 ALQVGVN-IQEGQHLIVM-APVSA-LPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKA 99 (418)
Q Consensus 23 lV~~~ln-iqkGe~VlI~-~d~~a-~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~ 99 (418)
-..-|.+ |..++.++|= +.... ..|++ +.++|.++|||.|.| ++++|| +.
T Consensus 491 aW~~G~d~L~~~dvLviDEAGMV~S~Qm~r-~l~~A~~AGaKvVLv--------------GD~~QL------------qa 543 (888)
T TIGR02768 491 AWANGRDLLEDKDVLVIDEAGMVGSRQMAR-VLKEAEEAGAKVVLV--------------GDPEQL------------QA 543 (888)
T ss_pred HHHCCCCCCCCCCEEEEECCCCHHHHHHHH-HHHHHHHCCCCEEEE--------------CCHHHH------------CH
T ss_conf 987387522477668985154414677889-999998727605984--------------885782------------44
Q ss_pred HHCCCEEEEEECCC-CHHHCCCCHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHH
Q ss_conf 84797899981597-32430799889-----9988898899989999998458873599965998999873689997789
Q gi|255764478|r 100 YSDNTALLSISGDN-PLLLVNEDSDK-----VSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIA 173 (418)
Q Consensus 100 ~~~~~a~i~i~~~n-p~~l~~vd~~k-----i~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s 173 (418)
++.+++|-+|.... --+|++|--+| .+...-|+...-+.+..|..++.+. +.-- =+.+
T Consensus 544 I~AGaaFRaia~riG~~El~~vrRQre~W~R~As~~LArG~v~~aL~aY~~~G~i~--~~~t--------------r~~A 607 (888)
T TIGR02768 544 IEAGAAFRAIAERIGYAELETVRRQREAWARQASLELARGEVEEALAAYRDHGHIT--IADT--------------REEA 607 (888)
T ss_pred HHCCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEE--EECC--------------HHHH
T ss_conf 24475001234101403254641002488899989752788789999998639443--5314--------------7899
Q ss_pred HHHHHHHHHHHHH-CCCCCHH--------HHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CCEEEEEECCCCEECCCCCC
Q ss_conf 9999999999974-2665979--------999999999999999730168479999769-96499995588262278860
Q gi|255764478|r 174 IAKLANTIFSVSR-AHCIDPI--------AAWAEHNNFLHQKSQWLSQRDFAEIRFSGP-NTSLKVGLAEGHRWSGGSSI 243 (418)
Q Consensus 174 ~~~l~~~if~a~~-~d~~Dpv--------~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~-gTDLt~~l~~~~~w~~~~~~ 243 (418)
++.+--..-.+.. .++.+-. .+=--+.+...+=++.||..=-..+.-.+. |-+|-++-+|.|.= -+..
T Consensus 608 ~~~~vadw~~d~~~~~~~~t~eGrdGrlrGdeli~LAH~r~DVr~LN~~~RE~l~~~~~lg~~lGlsdGPdrGd--rGdv 685 (888)
T TIGR02768 608 IEQVVADWKEDRREANQEETREGRDGRLRGDELIILAHTRKDVRALNEAAREALKERGELGESLGLSDGPDRGD--RGDV 685 (888)
T ss_pred HHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCC
T ss_conf 99999999998740150002134565424112100032058999999999999874664111147567888887--6763
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEEE----------EECCEEEEEEC---C--CHHHH
Q ss_conf 258971468678631695131473418999700330354022686999----------97889999985---4--37999
Q gi|255764478|r 244 AQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVR----------FDQGRVVEASA---S--KGEEM 308 (418)
Q Consensus 244 ~~~G~~~~~NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l~----------f~~G~vv~~~a---~--~~~~~ 308 (418)
...|. +|.|.-.- ..|.+|.-.|+- ==..=.|.++=.|- +|||.+=-++. . .|.-.
T Consensus 686 edrGn-------sGdva~~~-f~T~~G~R~Fa~-GdRi~FL~N~r~LGPrakhsGPqyVKNG~lGTV~~~~~~ae~GD~~ 756 (888)
T TIGR02768 686 EDRGN-------SGDVANIL-FRTERGERKFAA-GDRIVFLENDRDLGPRAKHSGPQYVKNGMLGTVEEIEDGAEAGDLR 756 (888)
T ss_pred CCCCC-------CCCEEEEE-EECCCCCEECCC-CCEEEEEECCCCCCCCCCCCCCCEEECCCCEEHHHHCCCCCCCCCE
T ss_conf 34677-------66501005-506677600158-8627876238766765546788602158501123111654237704
Q ss_pred HHHHHHCCCCC
Q ss_conf 99886428985
Q gi|255764478|r 309 LNKILDIDEGA 319 (418)
Q Consensus 309 l~~~l~~d~~a 319 (418)
|.-.|+...++
T Consensus 757 l~v~LD~~g~a 767 (888)
T TIGR02768 757 LSVQLDSAGGA 767 (888)
T ss_pred EEEEECCCCCC
T ss_conf 68887788863
No 37
>pfam04127 DFP DNA / pantothenate metabolism flavoprotein. The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism.
Probab=59.05 E-value=5.6 Score=19.67 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCHH--------------HHHHHHHHHHHHCCCCCCEE
Q ss_conf 99769998165358--------------99999999999828988689
Q gi|255764478|r 32 EGQHLIVMAPVSAL--------------PLARLITKHAYMLGAGLVSV 65 (418)
Q Consensus 32 kGe~VlI~~d~~a~--------------~l~ral~~aa~~~GA~~V~v 65 (418)
+|-+|||++....+ .++.+|+++|+.+||....+
T Consensus 1 kgk~vlITaG~T~E~ID~VR~ItN~SSGkmG~alA~~~~~~Ga~V~li 48 (197)
T pfam04127 1 KGRRVLVTSGGTREPIDPVRFISNFSSGKMGAAIAEEFLKRGADVTLI 48 (197)
T ss_pred CCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 998999936886444388315362695599999999999789938997
No 38
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=57.94 E-value=14 Score=16.97 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
..+.+++|..|.. .+|++|+.|.|..+...+-+ +++-++.++||-+|.+...-+
T Consensus 44 ~~~~~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e~i--~~~la~~~~Gav~vpl~~~~~ 97 (517)
T PRK08008 44 NQEINRTANLFYT--LGIRKGDKVALHLDNCPEFI--FCWFGLAKIGAIMVPINARLL 97 (517)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCCEEEEECCCCC
T ss_conf 9999999999997--49588599999938979999--999999986969997788799
No 39
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=57.36 E-value=14 Score=16.91 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+.+++|.-|+. -++|++||.|.|..+-..+-++ ..-++.++||-+|.++.
T Consensus 58 ~~~~~lA~~Ll~-~lGv~~Gd~Vai~~~n~~e~v~--a~lA~~k~Gav~vpl~~ 108 (560)
T PRK08751 58 QLVEQFAAYLLG-ELQLKKGDRVALMMPNCLQYPI--ATFGVLRAGLTVVNVNP 108 (560)
T ss_pred HHHHHHHHHHHH-HHCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECC
T ss_conf 999999999999-7398998999999599699999--99999986949982488
No 40
>PRK07059 acyl-CoA synthetase; Validated
Probab=57.23 E-value=14 Score=16.89 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
+.+.+++|..|. .++|++|+.|.|..+-..+-+ .++ -++.++||-+|.++.
T Consensus 55 ~~~~~~lA~~L~--~~Gv~~GdrV~i~~~n~~e~~-~~~-lA~~~~Gav~vpl~p 105 (557)
T PRK07059 55 DELSRALGAWLQ--SRGLAKGARVAIMMPNVLQYP-VAI-AAVLRAGYVVVNVNP 105 (557)
T ss_pred HHHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHH-HHH-HHHHHHCEEEEEECC
T ss_conf 999999999999--759699799999938979999-999-999985939984088
No 41
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=57.06 E-value=14 Score=16.88 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999987313479976999816535899999999999828988
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGL 62 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~ 62 (418)
.+..++|..|. .++|||||.|.|..+-..+-++-. -++.++||-.
T Consensus 92 ~~v~rlA~~L~--~~GV~~GDrVai~lpn~~E~via~--lA~~kiGAv~ 136 (629)
T PRK10524 92 DEVNRMAAMLR--SLGVQRGDRVLIYMPMIAEAAFAM--LACARIGAIH 136 (629)
T ss_pred HHHHHHHHHHH--HCCCCCCCEEEEECCCHHHHHHHH--HHHHHHCEEE
T ss_conf 99999999999--749599999999858849999999--9999969599
No 42
>PRK06368 consensus
Probab=56.95 E-value=14 Score=16.86 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
.+.+++|..|.+ .+|++|+.|.|..+...+-++ .+-++.++||-+|.++..-+
T Consensus 40 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e~~~--~~lA~~~~Gav~vpl~~~~~ 92 (529)
T PRK06368 40 KRVLNLAKALIS--IGVKKGDVVAVIDWDTYVYLE--AYFAVPMIGAVLHTVNVRYP 92 (529)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEECCCCHHHHH--HHHHHHHHCEEEEEECCCCC
T ss_conf 999999999997--695988999998488799999--99999985979972088899
No 43
>pfam09890 DUF2117 Uncharacterized protein conserved in archaea (DUF2117). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=56.83 E-value=14 Score=16.85 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEECCCEEEEEEEEEEEECCCCE-ECCEEEEEECCEEEEEECCCHH
Q ss_conf 67863169513147341899970033035402-2686999978899999854379
Q gi|255764478|r 253 NIPTEEVFTAPHARRVEGYATSTKPLVYQGML-IENIRVRFDQGRVVEASASKGE 306 (418)
Q Consensus 253 NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~-~~~~~l~f~~G~vv~~~a~~~~ 306 (418)
-.|.+-+| |||+++ |.. -+.+.|..|||++|++.++.-.
T Consensus 94 v~pGE~I~-------VNGiVI--------G~a~s~~V~lvaenG~iv~i~GG~iK 133 (209)
T pfam09890 94 VFPGENIM-------VNGIVI--------GKATSSEVELVSENGFIVDIIGGEIK 133 (209)
T ss_pred ECCCCCEE-------EEEEEE--------EEECCCCEEEEEECCEEEEEECCEEC
T ss_conf 08999479-------941899--------88648837999819979998784663
No 44
>PRK07771 consensus
Probab=56.70 E-value=14 Score=16.84 Aligned_cols=51 Identities=14% Similarity=0.024 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|. .++|++|+.|.|..+...+-++ .+-++.++||-+|.++..
T Consensus 46 ~~~~~lA~~L~--~~Gv~~GdrVai~~~n~~e~v~--~~lA~~~~Gav~vpl~~~ 96 (541)
T PRK07771 46 QRAAQLANALR--RLGVTGDQRVATFMWNNQEHLE--AYFAVPSMGAVLHTLNIR 96 (541)
T ss_pred HHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEECCCC
T ss_conf 99999999999--7696888999999089799999--999999869699920899
No 45
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=56.09 E-value=15 Score=16.77 Aligned_cols=168 Identities=15% Similarity=0.006 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCC
Q ss_conf 69999999999999987313479976999816535899999999999828988689872748989976059878986243
Q gi|255764478|r 10 HVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVA 89 (418)
Q Consensus 10 ~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p 89 (418)
+.++..+.+.|+.|...| |+-...+|.-|.. +-|.+.||.-|++-..|..+...+-..+++--+...-
T Consensus 50 ~~d~~~~~~~a~~L~~lc---~~~gv~lIIND~~---------dlA~~~gADGVHlGq~d~~~~~aR~~lg~~~IIG~~~ 117 (221)
T PRK06512 50 GLDEATFQKQAEKYVPVI---QEAGAAALIAGDT---------RIAGRVKADGLHIEGNAAALAEAIEKHAPKMIVGFGN 117 (221)
T ss_pred CCCHHHHHHHHHHHHHHH---HHCCCCEEECCCH---------HHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999999999---9829919988979---------9999709986652687531999999847886786405
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCC
Q ss_conf 36799999998479789998159732430799889998889889998999999845887359996599899987368999
Q gi|255764478|r 90 DWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDP 169 (418)
Q Consensus 90 ~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~ 169 (418)
-...+.-+.+.+.++-|++..+-.+.......|... ..++++. ...+++|+...==|..-+..|..-..
T Consensus 118 ~~s~~~A~~A~e~GADYv~fG~~~~~~k~~a~~~~l--------~~l~~~~---~~~~iP~VAIGGIt~~n~~~v~~aGa 186 (221)
T PRK06512 118 LRDRHGAMEVGELQPDYLFFGKLGADNKPEAHPRNL--------SLAEWWA---EMIEIPCIVQAGSDLASIVEVAETGA 186 (221)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCH--------HHHHHHH---HCCCCCEEEECCCCHHHHHHHHHHCC
T ss_conf 788999999997399857657878888998875425--------8999999---74799989982789999999998199
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 778999999999999742665979999999999999999
Q gi|255764478|r 170 VPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQ 208 (418)
Q Consensus 170 ~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~ 208 (418)
... ..-..|| +.+||-++-.++.+.+.+...
T Consensus 187 d~v---AVisaI~-----~a~Dp~~A~~~l~~llde~~p 217 (221)
T PRK06512 187 EFV---ALGRAVF-----DAHDPPLAVAEANALLDEKAP 217 (221)
T ss_pred CEE---EEHHHHH-----CCCCHHHHHHHHHHHHHCCCC
T ss_conf 899---8859960-----899999999999998733278
No 46
>pfam03192 DUF257 Pyrococcus protein of unknown function, DUF257.
Probab=55.81 E-value=15 Score=16.74 Aligned_cols=42 Identities=24% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 3479976999816535--89999999999982898868987274
Q gi|255764478|r 29 NIQEGQHLIVMAPVSA--LPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 29 niqkGe~VlI~~d~~a--~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
++|+||+|||..+... .-+...+.+.|.+.|-..++.++-|.
T Consensus 7 ~~k~GEtVLvEysS~~~~~l~~~~ii~~~~e~g~~ilI~DilDt 50 (210)
T pfam03192 7 KIKFGETVLIEYSSSSIPELLFYEIIKWAKEKGIPIVIDDILDT 50 (210)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 68899889999479984788999999999976993899954565
No 47
>PRK08276 acyl-CoA synthetase; Validated
Probab=55.67 E-value=15 Score=16.72 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf 9999999999987313479976999816535899999999999828988689872748
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE 71 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~ 71 (418)
.+.+++|..|.. .++++|+.|.|..+...+-++-. -++.++||-+|.+....+.
T Consensus 32 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~~s~e~v~~~--lA~~~~Ga~~vpl~~~~~~ 85 (507)
T PRK08276 32 ARSNRLAHGLRA--LGLREGDVVAILLENNPEFFEVM--WAARRSGLYYVPINWHLTA 85 (507)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHHHH--HHHHHHCCEEEEECCCCCH
T ss_conf 999999999997--39499699999938989999999--9999869799963888999
No 48
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=55.57 E-value=15 Score=16.71 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=49.4
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH
Q ss_conf 99999873134799769998165358999999999998289886898727489899760598789862433679999999
Q gi|255764478|r 20 AKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKA 99 (418)
Q Consensus 20 A~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~ 99 (418)
|-.++.....+|+||+|||..-... +......-|.++|+..+.+.-+++..+ ..-..+.+..+.+..+-..+...++
T Consensus 130 A~~~l~~~~~l~~g~~VLv~gaaGg--VG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~d~~~~v~~~ 206 (326)
T COG0604 130 AWLALFDRAGLKPGETVLVHGAAGG--VGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVREL 206 (326)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCH--HHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 9999997617699997999778546--999999999984995899981757889-9987399889705642489999998
Q ss_pred HHC--CCEEEEEEC
Q ss_conf 847--978999815
Q gi|255764478|r 100 YSD--NTALLSISG 111 (418)
Q Consensus 100 ~~~--~~a~i~i~~ 111 (418)
... -|.++-..+
T Consensus 207 t~g~gvDvv~D~vG 220 (326)
T COG0604 207 TGGKGVDVVLDTVG 220 (326)
T ss_pred HCCCCCCEEEECCC
T ss_conf 37998788997986
No 49
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=55.38 E-value=15 Score=16.69 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=13.8
Q ss_pred HHHHHHHCCCCCCEEEEECCCCH--HHHHHHHH
Q ss_conf 99987313479976999816535--89999999
Q gi|255764478|r 22 VALQVGVNIQEGQHLIVMAPVSA--LPLARLIT 52 (418)
Q Consensus 22 llV~~~lniqkGe~VlI~~d~~a--~~l~ral~ 52 (418)
+|=+.++.+++||.|-|..+..+ .-|++.+.
T Consensus 52 VLk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~ 84 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 141648998499999999999981999999995
No 50
>PRK09088 acyl-CoA synthetase; Validated
Probab=54.76 E-value=15 Score=16.62 Aligned_cols=54 Identities=24% Similarity=0.229 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf 9999999999987313479976999816535899999999999828988689872748
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE 71 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~ 71 (418)
.+.+++|..|.+ .+|++|+.|.|..+...+ ++. ..-++.++||-+|.+....+.
T Consensus 30 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~ns~e-~v~-~~lA~~~~Gav~vpl~~~~~~ 83 (485)
T PRK09088 30 ALIGRLAAVLRT--RGCVDGERLAVLARNSVW-QVA-LHFACARVGAIYVPLNWRLSA 83 (485)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHH-HHHHHHHHCEEEEEECCCCCH
T ss_conf 999999999997--695998999999189899-999-999999859099965898999
No 51
>pfam01041 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.
Probab=54.64 E-value=15 Score=16.61 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=28.0
Q ss_pred HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 7313479976999816535899999999999828988689872
Q gi|255764478|r 26 VGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 26 ~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.++++++|+.|++.+-.-. +...++..+||+||++...
T Consensus 58 ~a~~~~~gdeVi~p~~t~~-----at~~ai~~~G~~pvf~Dvd 95 (363)
T pfam01041 58 RALGIGPGDEVIVPSFTFV-----ATANAVLYLGAKPVFVDID 95 (363)
T ss_pred HHCCCCCCCEEEECCCCCH-----HHHHHHHHCCCEEEEEECC
T ss_conf 9859889299997997759-----8899999869979985064
No 52
>PRK09192 acyl-CoA synthetase; Validated
Probab=54.50 E-value=15 Score=16.60 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999999999999873134799769998165358999999999998289886898
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
+.+-+++|..|.. ++|++||.|.|..+...+ ++.++ -++.++||-+|.+.
T Consensus 56 ~~~a~rlA~~L~~--~Gv~~GDrVai~~~n~~e-~v~a~-lA~~~aGav~vPl~ 105 (580)
T PRK09192 56 RARAEAGARRLLA--LGLKPGDRVALIAETDSD-FVEAF-FACQYAGLVPVPLP 105 (580)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHHH-HHHHHHCEEEECCC
T ss_conf 9999999999997--697979999999388199-99999-99998494995556
No 53
>PRK08162 acyl-CoA synthetase; Validated
Probab=54.50 E-value=15 Score=16.60 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|.-|.. .+|++|+.|.|..+...+ ++.+ .-++.++||-+|.+...
T Consensus 51 ~~~~~lA~~L~~--~Gv~~Gd~Vai~~~n~~e-~v~~-~lA~~~~Gav~vpl~~~ 101 (545)
T PRK08162 51 ARCRRLASALAR--RGIGRGDTVAVLLPNIPA-MIEA-HFGVPMAGAVLNTLNTR 101 (545)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCEEEECCCCC
T ss_conf 999999999997--396998999999389699-9999-99999859899722889
No 54
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=54.00 E-value=16 Score=16.54 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
+.+.+++|..|.. .+|++||.|.|..+-..+ ++. +.-++.++||-+|.+...
T Consensus 60 ~~~~~~lA~~L~~--~Gv~~GDrVai~~~n~~e-~v~-~~lA~~~~Gav~vpl~~~ 111 (538)
T TIGR03208 60 DCRVDRIAVGLAR--LGVGRGDVVSFQLPNRWE-FTA-LYLACARIGAVLNPLMPI 111 (538)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCHHH-HHH-HHHHHHHHCEEEEEECCC
T ss_conf 9999999999997--596998999999188199-999-999999859399944899
No 55
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=53.50 E-value=16 Score=16.49 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+.+++|..|.. ++|++|+.|.|..+...+-++ ..-++.++||-+|.+..
T Consensus 62 ~~a~~lA~~L~~--~Gv~~Gd~V~i~~~ns~e~v~--~~lA~~k~Gav~vpl~~ 111 (546)
T PRK13295 62 ALVDRVAVGLAR--LGVGRGDVVSCQLPNWWQFTV--LYLACSRIGAVLNPLMP 111 (546)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEECCCHHHHHH--HHHHHHHHCEEEEEECC
T ss_conf 999999999997--496997999999188299999--99999984949984689
No 56
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=52.76 E-value=16 Score=16.41 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=30.1
Q ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99873134799769998165358999999999998289886898727
Q gi|255764478|r 23 ALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 23 lV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
+.=.++++++|+.|++.+-.- -+..-++..+||+||++....
T Consensus 48 lal~~l~~~~gdeVi~p~~t~-----~at~~ai~~~G~~pv~~Di~~ 89 (352)
T cd00616 48 LALRALGIGPGDEVIVPSFTF-----VATANAILLLGATPVFVDIDP 89 (352)
T ss_pred HHHHHCCCCCCCEEEECCCCC-----HHHHHHHHHCCCEEEEEECCC
T ss_conf 999986978839999899763-----989999998599899840777
No 57
>PRK08315 acyl-CoA synthetase; Validated
Probab=52.64 E-value=17 Score=16.40 Aligned_cols=49 Identities=24% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999999873134799769998165358999999999998289886898
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
.+.+++|..|.+ .+|++|+.|.|..+-..+ ++.+ .-++.++||-+|.+.
T Consensus 53 ~~~~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e-~v~~-~lA~~~~Gav~vpl~ 101 (561)
T PRK08315 53 EEVDALAKGLLA--LGIEKGDRVGIWAPNRPE-WLLT-QFATAKIGAVLVNIN 101 (561)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCEEEEEEC
T ss_conf 999999999997--495997999999089899-9999-999998592998418
No 58
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=51.45 E-value=17 Score=16.27 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999998731347997699981653589999999999982898
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAG 61 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~ 61 (418)
.+..++|..|.+ ++|||||.|.|..+-..+-++-. -++.++||-
T Consensus 100 ~~v~r~A~~L~~--lGV~kGDrVai~mpn~~E~via~--lA~~riGAV 143 (649)
T PTZ00237 100 EKVCEFSRVLLN--LNISKNDNVLIYMANTLEPLIAM--LSCARIGAT 143 (649)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEECCCHHHHHHHH--HHHHHHCCE
T ss_conf 999999999997--39798999999848829999999--999994929
No 59
>PRK07514 malonyl-CoA synthase; Validated
Probab=51.21 E-value=17 Score=16.25 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+..++|..|.. .+|++|+.|.|..+...+-++ ..-++.++||-+|.+...
T Consensus 36 ~~~~~lA~~L~~--~Gv~~GdrV~i~~~n~~e~v~--~~lA~~~~Gav~vpl~~~ 86 (504)
T PRK07514 36 AASARLANLLVA--LGVKPGDRVAVQVEKSPEALA--LYLATLRAGAVFLPLNTA 86 (504)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEEECCC
T ss_conf 999999999997--595997999999189899999--999999859199961888
No 60
>PRK07786 acyl-CoA synthetase; Validated
Probab=50.96 E-value=18 Score=16.22 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|.. .+|++||.|.|..+...+-++ ..-++.++||-+|.+...
T Consensus 55 ~~~~~lA~~L~~--~Gv~~GdrVai~~~n~~e~v~--~~lA~~~~Gav~vpl~~~ 105 (551)
T PRK07786 55 DRVAALAGALSR--RGVGFGDRVLILMLNRTEFVE--SVLAANMLGAIAVPVNFR 105 (551)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCHHHHHH--HHHHHHHHCCEEEEECCC
T ss_conf 999999999997--596987999999388099999--999999859399956898
No 61
>PRK12583 acyl-CoA synthetase; Provisional
Probab=50.88 E-value=18 Score=16.21 Aligned_cols=51 Identities=27% Similarity=0.260 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|.+ ++|++|+.|.|..+...+-+ ...-++.++||-+|.+...
T Consensus 53 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e~v--~~~lA~~~~Gav~vpl~~~ 103 (558)
T PRK12583 53 DAVDRLARGLLA--LGVQPGDRVGIWAPNCAEWL--LTQFATARIGAILVNINPA 103 (558)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCEEEEEECCC
T ss_conf 999999999997--49599799999928979999--9999999849399943899
No 62
>PRK07768 acyl-CoA synthetase; Validated
Probab=49.94 E-value=18 Score=16.11 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
.+.+++|.-|.. .+|+|||.|.|..+...+ ++.++ -++.++||-.+.+....+
T Consensus 37 ~~~~rlA~~L~~--~Gv~~GdrVai~~~n~~e-~~~~~-la~~~~Ga~~v~l~~~~~ 89 (543)
T PRK07768 37 ERARRIAGGLAA--AGVGPGDAVAVLAGAPVE-IAPTA-QGLWMRGASLTMLHQPTP 89 (543)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHHH-HHHHHHCCEEECCCCCCC
T ss_conf 999999999997--696999999998689899-99999-999984909967699987
No 63
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=49.75 E-value=18 Score=16.09 Aligned_cols=55 Identities=15% Similarity=0.037 Sum_probs=47.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCC
Q ss_conf 40699999999999999873134799769998165--35899999999999828988
Q gi|255764478|r 8 VAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGAGL 62 (418)
Q Consensus 8 ~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~ 62 (418)
+.-|++....+++.-+.++-.+-.++..|+|-.|. .+..|++++.+.....|.+.
T Consensus 11 ~~~~t~~~v~~~~~a~a~~l~~~~~~~~VvVG~D~R~~S~~~a~~~a~~l~s~Gi~V 67 (459)
T cd03088 11 VTDLTDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDAGFRV 67 (459)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 588999999999999999999758998699996899787999999999999779979
No 64
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.74 E-value=18 Score=16.09 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
.+.+++|..|.+.+ |++|+.|.|..+...+ ++.++ -++.++||-+|.++...
T Consensus 46 ~~~~~~A~~L~~~~--v~~gdrVail~~N~~e-~~~~~-~a~~~~Gav~vpln~~~ 97 (534)
T COG0318 46 RRANRLAAALQALG--VKPGDRVAILLPNSPE-FLIAF-LAALRAGAVAVPLNPRL 97 (534)
T ss_pred HHHHHHHHHHHHHC--CCCCCEEEEECCCCHH-HHHHH-HHHHHCCCEEEECCCCC
T ss_conf 99999999999848--8889989998788799-99999-99997698899769877
No 65
>PRK06219 consensus
Probab=49.57 E-value=18 Score=16.08 Aligned_cols=50 Identities=24% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+.+++|..|.. ++|++|+.|.|..+...+-+ .+ +-++.++||-+|.+..
T Consensus 50 ~~~~~lA~~L~~--~Gv~~GDrV~i~~~n~~e~~-~~-~lA~~~~Gav~vpl~~ 99 (547)
T PRK06219 50 ERIARLANVLTA--AGVKAGDTVAVMDWDSHRYL-EC-FFAIPMIGAVLHTINV 99 (547)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEECCCCHHHH-HH-HHHHHHHCEEEECCCC
T ss_conf 999999999997--69699899999868879999-99-9999985979975499
No 66
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit; InterPro: IPR012736 In bacteria, dihydroxyacetone is formed by the oxidation of glycerol or the aldol cleavage of fructose-6-phosphate. Dihydroxyacetone kinase converts this compound to the glycolytic intermediate dihydroxyacetone phosphate. Two forms of this enzyme have been shown to exist, using either ATP or a phosphoprotein of the phosphoenolpyruvate: sugar phosphotransferase system (PTS) as phosphate donor. The ATP-dependent kinases (2.7.1.29 from EC) are single-subunit enzymes that are composed of two domains . The phosphoprotein-dependent kinases are composed of three subunits: DhaK and DhaL, which are homologous to the domains from the ATP-dependent enzyme; and DhaM which is a component of the PTS system . This entry represents the DhaK subunit of phosphoprotein-dependent dihydroxyacetone kinase. The model excludes the DhaK paralog DhaK2 (IPR012735 from INTERPRO) encoded in the same operon as DhaK in the firmicutes, with which it sometimes exists as a DhaK/DhaK2 fusion. This subunit is a homodimer which contains the dihydroxyacetone-binding site . The overall fold consists of two six-stranded mixed beta-sheets surrounded by nine alpha-helices and a beta-ribbon covering the exposed edge strand of one sheet. .
Probab=49.33 E-value=3.7 Score=20.95 Aligned_cols=98 Identities=29% Similarity=0.344 Sum_probs=53.1
Q ss_pred CCCEEEEEECCC----------EEEEEEEEEEEECCCC-----------EECCEEEE---EECCEEEE---EE-------
Q ss_conf 631695131473----------4189997003303540-----------22686999---97889999---98-------
Q gi|255764478|r 256 TEEVFTAPHARR----------VEGYATSTKPLVYQGM-----------LIENIRVR---FDQGRVVE---AS------- 301 (418)
Q Consensus 256 ~GEVftaP~~~~----------vnG~i~~d~p~~~~G~-----------~~~~~~l~---f~~G~vv~---~~------- 301 (418)
.|||||||-.+. -.|++.+=| .|-|= ..|+|+.+ +.|=..|+ |+
T Consensus 76 ~GeVFTSPTPDqI~~AikAVD~G~GVLLIVK--NYtGDVmNFeMA~ElAE~eGI~V~~VvVdDDiAVeDS~YT~GRRGVA 153 (354)
T TIGR02363 76 PGEVFTSPTPDQILEAIKAVDQGAGVLLIVK--NYTGDVMNFEMAAELAEAEGIKVEQVVVDDDIAVEDSLYTAGRRGVA 153 (354)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE--CCCCCCCCHHHHHHHHHCCCCEEEEEEEECCEEEECCCCCCCCCCCC
T ss_conf 8788889785489998983037891379985--35588350778999862279766579980643322485044550420
Q ss_pred ------------CCCHHH--HHHHHHH-CCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEECC---CCCCEECCC
Q ss_conf ------------543799--9998864-28985268799986686200110120033232057---526412267
Q gi|255764478|r 302 ------------ASKGEE--MLNKILD-IDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDEN---AASHIAFGQ 358 (418)
Q Consensus 302 ------------a~~~~~--~l~~~l~-~d~~a~~igE~~ig~n~~~i~~~~~l~~n~L~DEk---~~~H~A~G~ 358 (418)
|++|.. .++++-+ .-++.|-+| +||.+-.-| ..|+-.+.+=.||= ++-|=-.|.
T Consensus 154 GTvfVhKI~GAaAE~G~~L~~~~~lg~~v~~~~ksiG-vAL~~cTVP--~~GKP~F~L~ddEmE~GvGIHGEPG~ 225 (354)
T TIGR02363 154 GTVFVHKIAGAAAEKGASLDELKALGEKVVKNTKSIG-VALTACTVP--AVGKPSFDLADDEMEIGVGIHGEPGI 225 (354)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE-EECCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 5788899999974068888999989888861224336-786778778--77888722588707873104688896
No 67
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=49.26 E-value=19 Score=16.04 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=25.7
Q ss_pred CCCCCCEEEEEECCCEEEE-EEEEEEEECCCCEECCEEEEEECCEEEEEECCCHH
Q ss_conf 6786316951314734189-99700330354022686999978899999854379
Q gi|255764478|r 253 NIPTEEVFTAPHARRVEGY-ATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGE 306 (418)
Q Consensus 253 NlP~GEVftaP~~~~vnG~-i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~ 306 (418)
--|.||++=-| +||. +.|+ +.+-.+|++|||++.-+--..
T Consensus 83 ctp~G~i~Gip----~nGkrV~Fs----------e~vfy~f~~~KI~~vwsv~Dk 123 (131)
T COG5485 83 CTPSGEIMGIP----PNGKRVRFS----------ENVFYEFENGKIVEVWSVIDK 123 (131)
T ss_pred CCCCCEEECCC----CCCCEEEEE----------HHHHHHHCCCEEEEEEHHCCH
T ss_conf 67673385447----888588866----------230232208757755012209
No 68
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=48.76 E-value=19 Score=15.99 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=17.9
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 999998543799999886428985268799986
Q gi|255764478|r 296 RVVEASASKGEEMLNKILDIDEGARRLGEVALV 328 (418)
Q Consensus 296 ~vv~~~a~~~~~~l~~~l~~d~~a~~igE~~ig 328 (418)
+++.++...-.++++.+++.+ +--+|==.++
T Consensus 279 ~~~~~~~~~~~eI~~~i~~a~--~~vvGsPT~~ 309 (388)
T COG0426 279 EVINLEDADPSEIVEEILDAK--GLVVGSPTIN 309 (388)
T ss_pred EEEECCCCCHHHHHHHHHHCC--EEEEECCCCC
T ss_conf 999915588999999987537--7999568646
No 69
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=48.38 E-value=19 Score=15.95 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
.+.+++|..|.. .++++|+.|.|..+...+-++ ..-++.++||-+|.+....+
T Consensus 35 ~~~~~~A~~L~~--~Gv~~gd~V~i~~~n~~e~~~--~~lA~~~~Gav~vpl~~~~~ 87 (481)
T PRK03640 35 EKVVSVAEKLAH--VGVKKGDRVALLMKNGMEMIL--VIHALQYLGAVAVLLNTRLS 87 (481)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECCCCC
T ss_conf 999999999997--494888999999389899999--99999985959997799899
No 70
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=48.09 E-value=19 Score=15.92 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
+.+.+++|..|.. ++|++|+.|.|..+... +++.+ .-++.++||-+|.+....+
T Consensus 65 ~~~~~~lA~~L~~--~Gv~~GdrVai~~~ns~-e~v~~-~lA~~~~Gav~vpl~~~~~ 118 (552)
T PRK06155 65 AAIAAAAAQALAA--AGVKPGDRVALMCGNRP-EFLDV-YLGCAWLGAIAVPINTALR 118 (552)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCH-HHHHH-HHHHHHHCEEEEEECCCCC
T ss_conf 9999999999997--59699799999918969-99999-9999984919996789899
No 71
>PRK07770 consensus
Probab=47.79 E-value=20 Score=15.89 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
.+.+++|..|.+ +++++|+.|.|..+...+-+ ...-++.++||-+|.+....+
T Consensus 40 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e~~--~~~la~~~~Gav~vpl~~~~~ 92 (508)
T PRK07770 40 DRVRRAAAALIA--LGVEPGDRVAIWAPNSAHWV--VAALALHTAGAVLVPLNTRYK 92 (508)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCCEEEEECCCCC
T ss_conf 999999999997--59598799999938979999--999999985959997699999
No 72
>KOG1197 consensus
Probab=47.78 E-value=20 Score=15.89 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCHHHH-----HHHH-------------HHHHHHCCCCCCEEEECCHHHHHHHHHCC-
Q ss_conf 9999987313479976999816535899-----9999-------------99999828988689872748989976059-
Q gi|255764478|r 20 AKVALQVGVNIQEGQHLIVMAPVSALPL-----ARLI-------------TKHAYMLGAGLVSVFYKDSEATLMLYKYG- 80 (418)
Q Consensus 20 A~llV~~~lniqkGe~VlI~~d~~a~~l-----~ral-------------~~aa~~~GA~~V~v~~~d~~~~r~~~~~a- 80 (418)
|..+++.|-+||||++||+.+-..-.-+ .|++ .+.|.+-||+++ +.++.+...+.-.++.
T Consensus 134 Ay~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~-I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197 134 AYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHP-IDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCE-EECCCHHHHHHHHHCCC
T ss_conf 99999986588999789998315628799999997528679997253788999986487430-00450569999984148
Q ss_pred ---CHHHHHHCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf ---878986243367999999984797899981
Q gi|255764478|r 81 ---ADYAFDRVADWFCEGLAKAYSDNTALLSIS 110 (418)
Q Consensus 81 ---~~e~l~~~p~~~~~~~~~~~~~~~a~i~i~ 110 (418)
-+-.++.+-.-..+....+.+.+..+.+..
T Consensus 213 gKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197 213 GKGVDAVYDSVGKDTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 877105632656414677899753486699823
No 73
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=47.77 E-value=20 Score=15.89 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=10.5
Q ss_pred CCCC-CCEEEEEECCCEEEEEEEEE
Q ss_conf 6786-31695131473418999700
Q gi|255764478|r 253 NIPT-EEVFTAPHARRVEGYATSTK 276 (418)
Q Consensus 253 NlP~-GEVftaP~~~~vnG~i~~d~ 276 (418)
.+|+ ||+-..---+..+|.++.+.
T Consensus 83 gl~~~~e~~~~~~Tgys~g~iy~n~ 107 (184)
T PRK12560 83 SLSELNNNVVNISSEYFEGVVYLNG 107 (184)
T ss_pred CCCCCCEEEEEEECCEEEEEEEECC
T ss_conf 8887852888751555776897046
No 74
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family. The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=47.06 E-value=20 Score=15.82 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCE--EEEEECCCEEEEEE
Q ss_conf 999999730168479999769964999955882622788602589714686786316--95131473418999
Q gi|255764478|r 203 LHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTEEV--FTAPHARRVEGYAT 273 (418)
Q Consensus 203 ~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w~~~~~~~~~G~~~~~NlP~GEV--ftaP~~~~vnG~i~ 273 (418)
-+.++++|+.+.|+.=++.+..=-+-++-.. +- .--.++...|.+|+..=-+..+ |+.=--+++|-.||
T Consensus 229 ~~Av~~Il~SKtFDnGtICASEQSvivE~~n-~~-aVv~Elk~QG~yFl~~ee~~~l~kf~lr~ngtMNp~iV 299 (528)
T TIGR02518 229 KKAVRKILDSKTFDNGTICASEQSVIVEKCN-KD-AVVEELKKQGGYFLTEEEAEKLGKFILRPNGTMNPQIV 299 (528)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCEEEECCC-HH-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 8999887402566776165313506861577-26-89999985242234778887664321268786076324
No 75
>PHA02131 hypothetical protein
Probab=46.91 E-value=20 Score=15.80 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=32.3
Q ss_pred ECCCEEEEEEEEEEEECCCCEECC--EEEEEECCEEEEEECCCHHHHHHHHHH
Q ss_conf 147341899970033035402268--699997889999985437999998864
Q gi|255764478|r 264 HARRVEGYATSTKPLVYQGMLIEN--IRVRFDQGRVVEASASKGEEMLNKILD 314 (418)
Q Consensus 264 ~~~~vnG~i~~d~p~~~~G~~~~~--~~l~f~~G~vv~~~a~~~~~~l~~~l~ 314 (418)
+-..|||+-.+|.- .|--..+ -++-|++|+|++++-......++++-.
T Consensus 8 hiakvngitkvdmi---rgh~~~g~~c~imfk~~~v~dctfk~dtaqfr~mek 57 (70)
T PHA02131 8 HIAKVNGITKVDMI---RGHYRFGISCWIMFKNDQVIDCTFKNDTAQFRSMEK 57 (70)
T ss_pred HHHHHCCCEEEEEE---CCCEECCEEEEEEECCCCEEEEEECCCHHHHHHHHH
T ss_conf 75542682577776---130005548999973897887056375898852999
No 76
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=45.97 E-value=21 Score=15.70 Aligned_cols=57 Identities=26% Similarity=0.485 Sum_probs=37.1
Q ss_pred EEEEEEEEE-EEECCCC---EECCEEEEEECCEEEEEECCCHH------HHHHHHHHCCCCCCEEEE
Q ss_conf 418999700-3303540---22686999978899999854379------999988642898526879
Q gi|255764478|r 268 VEGYATSTK-PLVYQGM---LIENIRVRFDQGRVVEASASKGE------EMLNKILDIDEGARRLGE 324 (418)
Q Consensus 268 vnG~i~~d~-p~~~~G~---~~~~~~l~f~~G~vv~~~a~~~~------~~l~~~l~~d~~a~~igE 324 (418)
.+|.|.++. ...|.+. ..+++.|+++.|..+-+-|+.|. .+|-.+.+.++|.-+++.
T Consensus 337 ~~g~I~~~nVsF~Y~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~idg 403 (581)
T PRK11176 337 AKGDVEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 403 (581)
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 8860899985784489986201066335799944312289998678999999853667887487898
No 77
>PRK07656 acyl-CoA synthetase; Validated
Probab=45.63 E-value=21 Score=15.67 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999999873134799769998165358999999999998289886898
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
.+.+++|..|.+ .++++|+.|.|..+...+-++ ++ -++.++||-+|.+.
T Consensus 39 ~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~~~-~~-lA~~~~Gav~vpl~ 87 (520)
T PRK07656 39 ARVRRAAAALAA--LGIEKGDRVAIWLPNSPHWVI-AA-LGALKAGAVVVPVN 87 (520)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH-HH-HHHHHHCCEEEEEC
T ss_conf 999999999997--294884999999389899999-99-99998696999758
No 78
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=45.58 E-value=21 Score=15.66 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+-+++|..|.+ .++|++|+.|.|..+... +++.+ .-++.++||-+|.++.
T Consensus 56 ~~a~~lA~~L~~-~lGv~~Gd~Vai~~~ns~-e~v~a-~lA~~k~Gav~vpl~~ 106 (559)
T PRK08974 56 ERSRAFAAYLQN-GLGLKKGDRVALMMPNLL-QYPIA-LFGILRAGMIVVNVNP 106 (559)
T ss_pred HHHHHHHHHHHH-HHCCCCCCEEEEEECCCH-HHHHH-HHHHHHHCCEEEEECC
T ss_conf 999999999987-309899999999948969-99999-9999985929984288
No 79
>PRK04813 D-alanine--D-alanyl carrier protein ligase; Provisional
Probab=45.40 E-value=21 Score=15.65 Aligned_cols=53 Identities=19% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
+.+.+++|..|. .++|++|+.|.|..+...+-++ ++-++.++||-+|.+....
T Consensus 34 ~~~~~~~A~~L~--~~Gv~~gd~V~v~~~n~~e~v~--~~lA~~~~G~v~vpi~~~~ 86 (503)
T PRK04813 34 KEDSDALAAFID--SLALPDKSPIIVFGHMSPEMLA--TFLGAVKSGHAYIPVDTSS 86 (503)
T ss_pred HHHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHHH--HHHHHHHHCCEEEECCCCC
T ss_conf 999999999999--7294883999998489999999--9999998697999518899
No 80
>KOG2733 consensus
Probab=45.36 E-value=21 Score=15.64 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=36.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCC--CCEEEEECCCCH----HHH-----------------HHHHHHHHHHCCCCCCE
Q ss_conf 4069999999999999987313479--976999816535----899-----------------99999999982898868
Q gi|255764478|r 8 VAHVDEFLLEKLAKVALQVGVNIQE--GQHLIVMAPVSA----LPL-----------------ARLITKHAYMLGAGLVS 64 (418)
Q Consensus 8 ~~~m~~~~L~kyA~llV~~~lniqk--Ge~VlI~~d~~a----~~l-----------------~ral~~aa~~~GA~~V~ 64 (418)
++.=|+++|+.-.+-+ +....+ -+.++|++|... .++ .++++++|.+.|+++|-
T Consensus 38 vAGRn~~KL~~vL~~~---~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vD 114 (423)
T KOG2733 38 VAGRNEKKLQEVLEKV---GEKTGTDLSSSVILIADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVD 114 (423)
T ss_pred EECCCHHHHHHHHHHH---HHCCCCCCCCCEEEEECCCCHHHHHHHHHHHEEEEECCCCCEECCCHHHHHHHHCCCCEEC
T ss_conf 7327888999999998---6324888665438994378878999998641787751556312471899999875985331
Q ss_pred EEECCHHHHHHH
Q ss_conf 987274898997
Q gi|255764478|r 65 VFYKDSEATLML 76 (418)
Q Consensus 65 v~~~d~~~~r~~ 76 (418)
+.-....++|.-
T Consensus 115 ISGEP~f~E~mq 126 (423)
T KOG2733 115 ISGEPQFMERMQ 126 (423)
T ss_pred CCCCHHHHHHHH
T ss_conf 478879999998
No 81
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=44.63 E-value=22 Score=15.57 Aligned_cols=53 Identities=15% Similarity=0.009 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
.+.+++|..|.. .++++|+.|.|..+-..+-++ ..-++.++||-+|.+.-.+.
T Consensus 54 ~~~~~lA~~L~~--~Gv~~Gd~Vai~~~n~~e~~v--a~la~~k~Gav~vpl~p~~~ 106 (541)
T TIGR03205 54 AMAETAAAALLR--AGYGKDASVALYLGNTPDHPI--NFFGALKAGARVVHLSPLDG 106 (541)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEECCCCCC
T ss_conf 999999999997--596998999999289799999--99999985909996488983
No 82
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=44.35 E-value=22 Score=15.54 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=17.7
Q ss_pred EECCCC--HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf 981653--589999999999982898868987274898997
Q gi|255764478|r 38 VMAPVS--ALPLARLITKHAYMLGAGLVSVFYKDSEATLML 76 (418)
Q Consensus 38 I~~d~~--a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~ 76 (418)
|.+++. +.-++-|.+ |-..|- +..+.+....+.|+.
T Consensus 106 iIAETGAGQHGVAtAta--~A~fgl-~C~iYMGa~Dv~RQ~ 143 (396)
T COG0133 106 IIAETGAGQHGVATATA--AALFGL-ECVIYMGAEDVERQA 143 (396)
T ss_pred EEEECCCCCCCHHHHHH--HHHHCC-CEEEEECCHHHHHCC
T ss_conf 88614887320799999--998299-549994615654405
No 83
>pfam08553 VID27 VID27 cytoplasmic protein. This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation.
Probab=44.14 E-value=22 Score=15.51 Aligned_cols=169 Identities=17% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCC-EEEEEE--CCCEEEEEEEE-EEEECCC--CE--------ECCEE
Q ss_conf 96499995588262278860258971468678631-695131--47341899970-0330354--02--------26869
Q gi|255764478|r 224 NTSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTEE-VFTAPH--ARRVEGYATST-KPLVYQG--ML--------IENIR 289 (418)
Q Consensus 224 gTDLt~~l~~~~~w~~~~~~~~~G~~~~~NlP~GE-VftaP~--~~~vnG~i~~d-~p~~~~G--~~--------~~~~~ 289 (418)
+.-|+|+.+.+|-..-.|.+. |. |-+=|... -|.+-+ -.+.+|..... ++|.|+. .+ -.=.+
T Consensus 427 Ns~LaVGyK~DRSfVvRG~kI--GV--Fk~t~d~~l~F~T~I~~v~t~~Gk~f~P~k~MLh~qD~~mil~~~~~~n~lYk 502 (788)
T pfam08553 427 NSSLAVGYKNDRSYVVRGDKI--GV--FKHTDDDSLEFVTAINNVSDPKGKSFSPHKMMLHNEDRNMILQDPSNKNKLYK 502 (788)
T ss_pred CCEEEEEECCCCEEEEECCCE--EE--EECCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCHHHHCCCCCCCCCEEE
T ss_conf 624788872671499867815--56--63179985178662023558898665865102222120320038999884178
Q ss_pred EEEECCEEEEE-ECCCHHHHHHHHHHCCCCCCEEEE-EEEECCCCCHHHH-CCCCCCEEEECC----------------C
Q ss_conf 99978899999-854379999988642898526879-9986686200110-120033232057----------------5
Q gi|255764478|r 290 VRFDQGRVVEA-SASKGEEMLNKILDIDEGARRLGE-VALVPHSSLLSKM-NTLFYDTLFDEN----------------A 350 (418)
Q Consensus 290 l~f~~G~vv~~-~a~~~~~~l~~~l~~d~~a~~igE-~~ig~n~~~i~~~-~~l~~n~L~DEk----------------~ 350 (418)
+-.+-|+||+- .....- -+..+.-.-..+..-+| -=+|.+..++.++ -++.+|.|.|.. .
T Consensus 503 MDle~gkvV~EW~~~d~~-~v~~~~p~~Kf~q~t~eqtf~G~s~n~lfriDPRl~g~Klv~~~~k~Y~skn~Fs~~aTt~ 581 (788)
T pfam08553 503 MDLEYGKVVDEWKVSDDV-PVVQYAPTKKFAQMTAEQTFLGISHNGVFRIDPRLSGNKLVDSESKQYASKNDFSALATTE 581 (788)
T ss_pred EECCCCCEEEEEECCCCC-CEEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCCEEEECC
T ss_conf 654678677882237887-5047247654101457652675547724887775578703403000114466542477448
Q ss_pred CCCEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCCCEEE
Q ss_conf 26412267750003676678834432069850124587996788199999817995999
Q gi|255764478|r 351 ASHIAFGQCYSKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVP 409 (418)
Q Consensus 351 ~~H~A~G~~y~~~~~~~~~~~~~~~~~~g~n~S~~H~D~~~~~~~i~vdgi~~dG~~~~ 409 (418)
.||||+|.+-. ..-+ ....|.| +-+|+-. +|.|=|-|| +++||++++
T Consensus 582 ~G~iAv~S~kG-----diRL----fDrlg~~-AKT~lp~-lGdpIigid-vs~DGrwil 628 (788)
T pfam08553 582 KGYIAVASNKG-----DIRL----FDRLGIN-AKTAIPA-LGDPIIGID-VSADGRWLL 628 (788)
T ss_pred CCEEEEEECCC-----CEEE----ECCCCCH-HHHCCCC-CCCCEEEEE-ECCCCCEEE
T ss_conf 85499850688-----4686----4324730-1003877-799636567-547881899
No 84
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase; InterPro: IPR001160 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This majority of this group of proteins are aminoacyl-histidine dipeptidases (3.4.13.3 from EC, Xaa-His dipeptidases), which are zinc-containing metallopeptidases that belong to MEROPS peptidase family M20 (clan MH), subfamily M20C . Proteins of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His , . The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide.. The X-His dipeptidases cleave Xaa-His dipeptides (where Xaa is any hydrophobic residue). The amino acid sequence deduced from Escherichia coli reveals that peptidase D is a slightly hydrophilic protein of 485 residues that contains no extended domains of marked hydrophobicity . Also contained within this family of proteins are acetylornithine deactylases which belong to MEROPS peptidase family M20, subfamily M20A non-peptidase homologues. ; GO: 0008769 X-His dipeptidase activity, 0006508 proteolysis.
Probab=44.11 E-value=7.5 Score=18.81 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=47.5
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCC-CEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 4266597999999999999999973016847999976996499995588-262278860258971468678631695131
Q gi|255764478|r 186 RAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEG-HRWSGGSSIAQNGIMCNPNIPTEEVFTAPH 264 (418)
Q Consensus 186 ~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~-~~w~~~~~~~~~G~~~~~NlP~GEVftaP~ 264 (418)
.++.+|--..|+.++..+..+++- .+...++-+|.++-.+. -++...|++..+. ..|+-+||+.=-
T Consensus 272 a~~~~d~~~~~~~v~~~~~~~K~~--------Y~~~~~~~~~~~~~~E~~iifeasGGkitrk-----ev~~~~v~s~~~ 338 (506)
T TIGR01893 272 AIDEEDVKKLEELVKNFQSKFKKE--------YSELEPNITLEVSKEENSIIFEASGGKITRK-----EVKSEKVFSEET 338 (506)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHH--------HHHCCCCCEEEEEEECCEEEEECCCCEEEEE-----CCCCCCCCCHHH
T ss_conf 981520899999988899987666--------5311888318998632617884378723310-----047654474257
Q ss_pred CCC--------EEEEEEEEEEEECCCCEE--CC-EEEEEECCEEEEEEC
Q ss_conf 473--------418999700330354022--68-699997889999985
Q gi|255764478|r 265 ARR--------VEGYATSTKPLVYQGMLI--EN-IRVRFDQGRVVEASA 302 (418)
Q Consensus 265 ~~~--------vnG~i~~d~p~~~~G~~~--~~-~~l~f~~G~vv~~~a 302 (418)
.++ .||+-.... .+.|.+. .+ =.++.++++|+-+.-
T Consensus 339 ~~k~i~~~~~~p~GV~~~~~--~~~~~VeSS~NL~~~~~~~~~~~~~~~ 385 (506)
T TIGR01893 339 TEKLINALNLLPNGVQRVSD--ELPGLVESSLNLAVVKTKENKVIVVFL 385 (506)
T ss_pred HHHHHHHHHHCCCCCCHHHH--CCCCEEEEECCEEEEEEECCEEEEEEE
T ss_conf 89999999735898310553--059826630443889984767999988
No 85
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=43.97 E-value=22 Score=15.50 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
..+.+++|..|.. .++++|+.|.|..+...+ ++. ++-++.++||-+|.++...
T Consensus 35 ~~~~~~~A~~L~~--~Gv~~Gd~V~l~~~n~~e-~v~-~~lA~~~~Gav~vpl~~~~ 87 (458)
T PRK09029 35 CARIDELAAGFQQ--QGVVEGSGVALRGKNSPE-TLL-AYLALLQCGARVLPLNPQL 87 (458)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHH-HHHHHHHHCCEEEEECCCC
T ss_conf 9999999999997--495986999999289799-999-9999998696999978878
No 86
>PRK07008 acyl-CoA synthetase; Validated
Probab=43.36 E-value=23 Score=15.43 Aligned_cols=51 Identities=12% Similarity=-0.042 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|.. ++|++||.|.|..+...+ ++.+ +-++.++||-+|.+...
T Consensus 47 ~~~~~lA~~L~~--~Gv~~GdrVai~~~n~~e-~~~~-~~a~~~~Gav~vpl~~~ 97 (539)
T PRK07008 47 RRARQLAQALAA--LGVEPGDRVGTLAWNGYR-HLEA-YYGVSGSGAVCHTINPR 97 (539)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHH-HHHHHHHCEEEEEECCC
T ss_conf 999999999997--696886999998788799-9999-99999849699844899
No 87
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.09 E-value=23 Score=15.41 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=24.3
Q ss_pred EEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECCCHH
Q ss_conf 418999700330354022686999978899999854379
Q gi|255764478|r 268 VEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGE 306 (418)
Q Consensus 268 vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~ 306 (418)
|||+++-.- .-.++.|.+|+|.+|++.|+.-.
T Consensus 175 VnGIvVGkA-------~S~~V~LVaEnG~lt~i~GG~IK 206 (367)
T COG4069 175 VNGIVVGKA-------TSSEVELVAENGFLTDIEGGRIK 206 (367)
T ss_pred EEEEEEEEE-------CCCCEEEEEECCEEEEEECCEEC
T ss_conf 941798665-------15746999618679987555544
No 88
>PRK13390 acyl-CoA synthetase; Provisional
Probab=43.05 E-value=23 Score=15.40 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
..+.+++|..|.+ .+|++||.|.|..+...+-++ +.-++.++||-+|.+...
T Consensus 31 ~~~~~~lA~~L~~--~Gv~~Gd~Vai~~~n~~e~v~--~~lA~~~~Gav~vpl~~~ 82 (501)
T PRK13390 31 DDDSAALARVLYD--AGLRTGDVVALLSDNSPEALV--VLWAALRSGLYITAINHH 82 (501)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEEECCC
T ss_conf 9999999999997--495998999999189799999--999999859599806898
No 89
>PRK13391 acyl-CoA synthetase; Provisional
Probab=42.87 E-value=23 Score=15.39 Aligned_cols=51 Identities=16% Similarity=0.029 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|.. ++|+|||.|.|..+...+-+ ++.-++.++||-+|.+.-.
T Consensus 32 ~~~~~~A~~L~~--~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Gav~vpl~~~ 82 (514)
T PRK13391 32 ARSNRLAHLFRS--HGLRRGDHVAIFMENNLRYL--EACWAAERSGLYYTCVNSY 82 (514)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCEEEEEECCC
T ss_conf 999999999997--59599899999948979999--9999999859099956899
No 90
>PRK13383 acyl-CoA synthetase; Provisional
Probab=42.71 E-value=23 Score=15.37 Aligned_cols=53 Identities=19% Similarity=0.110 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
+.+-+++|..|.. .+|++|+.|.|..+...+-++ ..-++.++||-+|.+....
T Consensus 67 ~~~a~~lA~~L~~--~Gv~~GdrVav~~~ns~e~v~--a~lAi~k~Gav~vPl~~~~ 119 (516)
T PRK13383 67 QRATESLARRLTR--DGVAPGRAVGVMCRNGRGFVT--AVFAVGLLGADVVPISTEF 119 (516)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECCCC
T ss_conf 9999999999997--596895999999088299999--9999998691999578889
No 91
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=42.56 E-value=23 Score=15.35 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.2
Q ss_pred EEEECCEEEEEECCCHHHHHHHHH
Q ss_conf 999788999998543799999886
Q gi|255764478|r 290 VRFDQGRVVEASASKGEEMLNKIL 313 (418)
Q Consensus 290 l~f~~G~vv~~~a~~~~~~l~~~l 313 (418)
..|++|+++++.|...++.|-++|
T Consensus 92 yvfk~~~~IEydG~~sadtLVeFL 115 (120)
T cd03065 92 YVFKDDEVIEYDGEFAADTLVEFL 115 (120)
T ss_pred EEEECCCEEEECCEECHHHHHHHH
T ss_conf 998689388664713758999999
No 92
>pfam11006 DUF2845 Protein of unknown function (DUF2845). This bacterial family of proteins has no known function.
Probab=42.39 E-value=23 Score=15.34 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=12.9
Q ss_pred EEEEECCEEEEEECC
Q ss_conf 999978899999854
Q gi|255764478|r 289 RVRFDQGRVVEASAS 303 (418)
Q Consensus 289 ~l~f~~G~vv~~~a~ 303 (418)
.|+|++|+|++++-.
T Consensus 70 ~l~fe~Gkl~~Ie~~ 84 (85)
T pfam11006 70 ILRFENGKLVRIESG 84 (85)
T ss_pred EEEEECCEEEEEEEC
T ss_conf 999989999997728
No 93
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=42.35 E-value=23 Score=15.33 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=18.6
Q ss_pred HCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1347997699981653589999999999982898
Q gi|255764478|r 28 VNIQEGQHLIVMAPVSALPLARLITKHAYMLGAG 61 (418)
Q Consensus 28 lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~ 61 (418)
.++|+|++|+|... =++.......|..+||.
T Consensus 162 ~~v~~g~~V~V~G~---G~iGl~a~~~ak~~Ga~ 192 (349)
T TIGR03201 162 AGLKKGDLVIVIGA---GGVGGYMVQTAKAMGAA 192 (349)
T ss_pred CCCCCCCEEEEECC---CHHHHHHHHHHHHCCCE
T ss_conf 17899988999897---48999999999985997
No 94
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=42.30 E-value=24 Score=15.33 Aligned_cols=57 Identities=19% Similarity=0.358 Sum_probs=42.2
Q ss_pred EEEECCCEEEEE-----EEEEEEECCCCEECCEEEEEECCEEEEEECCCH------HHHHHHHHHCCCCC
Q ss_conf 513147341899-----970033035402268699997889999985437------99999886428985
Q gi|255764478|r 261 TAPHARRVEGYA-----TSTKPLVYQGMLIENIRVRFDQGRVVEASASKG------EEMLNKILDIDEGA 319 (418)
Q Consensus 261 taP~~~~vnG~i-----~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~------~~~l~~~l~~d~~a 319 (418)
-+| ..++|.| .|++|.-+.-.+-+|++++++=|++|-.=|+.| ..+|.++.+-+.|.
T Consensus 522 ~~P--~~~~G~ieF~dVsFsYP~RP~~pvLk~LtFt~~PG~vvALVGPsGsGKStvaaLL~n~Y~Pt~G~ 589 (770)
T TIGR00958 522 LAP--KNLEGKIEFQDVSFSYPNRPDVPVLKGLTFTLEPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 589 (770)
T ss_pred CCC--CCCEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 145--76322588753223178988976112774365386259986589983999999998557898656
No 95
>PRK05677 acyl-CoA synthetase; Validated
Probab=42.20 E-value=24 Score=15.32 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999999873134799769998165358999999999998289886898
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
.+.+++|..|.+ -++|++||.|.|..+...+ ++. ..-++.++||-+|.++
T Consensus 57 ~~~~~lA~~L~~-~~Gv~~GDrVai~~~n~~e-~v~-a~la~~~~Gav~vpln 106 (562)
T PRK05677 57 KLSGAFAAWLQQ-HTDLKPGDRIAVQLPNVLQ-YPI-AVFGAMRAGLIVVNTN 106 (562)
T ss_pred HHHHHHHHHHHH-HHCCCCCCEEEEEECCCHH-HHH-HHHHHHHHCEEEEECC
T ss_conf 999999999887-0298999999999289599-999-9999998495998229
No 96
>TIGR02619 TIGR02619 putative CRISPR-associated protein, APE2256 family; InterPro: IPR013442 This entry represents a conserved region of about 150 amino acids found in at least five archaeal and three bacterial species. These species all contain CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus..
Probab=42.08 E-value=24 Score=15.30 Aligned_cols=38 Identities=24% Similarity=0.123 Sum_probs=17.9
Q ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 31347997699981653589999999999982898868
Q gi|255764478|r 27 GVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVS 64 (418)
Q Consensus 27 ~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~ 64 (418)
.+.-..|..+++.++-.-+|=+-.+.-+++.+||.||+
T Consensus 99 ~~~~~~r~v~~~~~TGGFKpea~~l~~~asl~GA~~vf 136 (151)
T TIGR02619 99 KVAESERNVVLLAATGGFKPEAAVLVLVASLAGALPVF 136 (151)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 64215887688885999858899999999985346534
No 97
>PRK07788 acyl-CoA synthetase; Validated
Probab=41.81 E-value=24 Score=15.28 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
+.+-+++|.-|.. .+|++|+.|.|..+...+ ++.+ +-++.++||-+|.++...
T Consensus 85 ~~~a~~lA~~L~~--~Gv~~GdrVai~~~ns~e-~v~a-~lA~~k~Gav~vpl~~~~ 137 (552)
T PRK07788 85 DEASHALARGLLA--KGVRAGDGVAVLARNHRG-FVIA-LYAAGKLGARIILLNTGF 137 (552)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCCEEEEECCCC
T ss_conf 9999999999997--695999999999088099-9999-999998491999678999
No 98
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=41.54 E-value=24 Score=15.25 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=30.2
Q ss_pred CCCCCEEEEECCC-----------CHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 4799769998165-----------358999999999998289886898
Q gi|255764478|r 30 IQEGQHLIVMAPV-----------SALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 30 iqkGe~VlI~~d~-----------~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
+++|+.|+|.-.. ..-++++|+++.+.++|++|++..
T Consensus 34 i~~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g~ep~vgd 81 (293)
T COG2006 34 ISPGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAGGEPVVGD 81 (293)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 678988886575346799978775698999999999998089606851
No 99
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=40.72 E-value=25 Score=15.16 Aligned_cols=29 Identities=17% Similarity=0.467 Sum_probs=24.6
Q ss_pred EEEEEECCCEEEEEEEECCCCEEEEEECCEE
Q ss_conf 5879967881999998179959998867845
Q gi|255764478|r 386 HIDWMIGSGDMNVDGLTKNGVLVPIMRGGEW 416 (418)
Q Consensus 386 H~D~~~~~~~i~vdgi~~dG~~~~i~~~G~~ 416 (418)
-=|+++-.+++.|..+..+|+. +++||+.
T Consensus 349 dADlvi~D~d~~v~~v~~~G~~--v~~~g~~ 377 (384)
T PRK10657 349 DADLLVLDDDLEIEQVIAKGKL--MVKDGKA 377 (384)
T ss_pred CCCEEEECCCCCEEEEEECCEE--EEECCEE
T ss_conf 4408999899996489988799--9999999
No 100
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=40.71 E-value=25 Score=15.16 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999987313479
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQE 32 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqk 32 (418)
.+..+..-+.++.+..+.++
T Consensus 28 ~~~f~~~id~l~~~~~~~~~ 47 (175)
T TIGR01090 28 PELFRFLIDLLVERYKDANG 47 (175)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 77899999999999986079
No 101
>TIGR01038 L22_arch ribosomal protein L22; InterPro: IPR005721 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=40.38 E-value=17 Score=16.39 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.7
Q ss_pred CCCCEEEEECCCHH
Q ss_conf 88735999659989
Q gi|255764478|r 146 FDINWSIVPFPSCA 159 (418)
Q Consensus 146 ~~~~W~i~~~Pt~a 159 (418)
.+..|.-.+||..+
T Consensus 72 k~~Gw~~GRYP~Ka 85 (151)
T TIGR01038 72 KKWGWTAGRYPVKA 85 (151)
T ss_pred CCCCCCCCCCCHHH
T ss_conf 20577788860789
No 102
>PRK08308 acyl-CoA synthetase; Validated
Probab=40.28 E-value=25 Score=15.12 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH-HCCCHHH--HHHCC
Q ss_conf 99999999999987313479976999816535899999999999828988689872748989976-0598789--86243
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLY-KYGADYA--FDRVA 89 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~-~~a~~e~--l~~~p 89 (418)
+.+.+++|.++ + .++++|+.|.|..+-.. +++.+ .-++.++||-+|.+.-..+.-..... +.+.-.. .+..+
T Consensus 15 ~~~~~~~A~~l-~--~~~~~GdrVal~~~~s~-e~v~~-~lAi~~~Ga~~vPl~p~~p~~~~~~i~~~~~~~~ll~~~~~ 89 (413)
T PRK08308 15 DLRLQRYEEME-Q--FQEAAGNRFALCLKDPF-DIITL-VFFLKEKGASVLPIHPSTPKAAAIRLAKRAGCHGLLYGENS 89 (413)
T ss_pred HHHHHHHHHHH-H--HCCCCCCEEEEEECCHH-HHHHH-HHHHHHHCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999999999-8--58999498999979829-99999-99999868099961868819999999986698399967987
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHCCCC
Q ss_conf 36799999998479789998159732430799
Q gi|255764478|r 90 DWFCEGLAKAYSDNTALLSISGDNPLLLVNED 121 (418)
Q Consensus 90 ~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd 121 (418)
+..............++|..+|-.+-.-|++-
T Consensus 90 ~~~~~~~~~~~~~~pa~i~yTSGTTG~PKgV~ 121 (413)
T PRK08308 90 DFTKLEAVNTLAEEPSLLQYSSGTTGEPKLIR 121 (413)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEE
T ss_conf 52114667778999869998956334373499
No 103
>pfam02144 Rad1 Repair protein Rad1/Rec1/Rad17.
Probab=40.17 E-value=24 Score=15.21 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=13.9
Q ss_pred EEEEEEECCCCEEEEEECC
Q ss_conf 4799997699649999558
Q gi|255764478|r 215 FAEIRFSGPNTSLKVGLAE 233 (418)
Q Consensus 215 ~~~i~~~~~gTDLt~~l~~ 233 (418)
..++.|.++|.-|.+-+.+
T Consensus 95 s~~l~Y~g~G~Pl~l~lee 113 (250)
T pfam02144 95 SCRLSYKGEGSPLVLILEE 113 (250)
T ss_pred EEEEEECCCCCCEEEEEEE
T ss_conf 8999985899968999993
No 104
>KOG1201 consensus
Probab=40.01 E-value=25 Score=15.09 Aligned_cols=53 Identities=26% Similarity=0.230 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf 9999999987313479976999816535899999999999828988689872748
Q gi|255764478|r 17 EKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE 71 (418)
Q Consensus 17 ~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~ 71 (418)
.....+++..-..--+||.|||+..-.- |.|++..+..++||+.|...++...
T Consensus 22 ~s~~~~~l~~~~k~v~g~~vLITGgg~G--lGr~ialefa~rg~~~vl~Din~~~ 74 (300)
T KOG1201 22 ESLIKLLLPKPLKSVSGEIVLITGGGSG--LGRLIALEFAKRGAKLVLWDINKQG 74 (300)
T ss_pred HHHHHHHCCCCHHHCCCCEEEEECCCCH--HHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 9999875554334406988999689860--7899999999707848999556512
No 105
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=39.61 E-value=26 Score=15.05 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 31347997699981653589999999999982898868987
Q gi|255764478|r 27 GVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 27 ~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
..++++||+|||...... +..+...-|...||+ |+..-
T Consensus 99 ~~~i~~g~~VlI~gg~G~--vG~~aiqlak~~Ga~-Vi~t~ 136 (288)
T smart00829 99 LARLRPGESVLIHAAAGG--VGQAAIQLAQHLGAE-VFATA 136 (288)
T ss_pred HCCCCCCCEEEEECCCCH--HHHHHHHHHHHCCCC-EEEEE
T ss_conf 508899999999789867--779999999973983-00340
No 106
>PRK07684 consensus
Probab=39.59 E-value=26 Score=15.05 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
.+.+++|..|.. .+|++|+.|.|..+...+ ++.+ .-++.++||-+|.+....+
T Consensus 36 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~ns~e-~v~~-~lA~~~~Gav~vpl~~~~~ 88 (516)
T PRK07684 36 EQVNKTAHALLE--EGVRKGDTVSVYLYNCRE-FVNV-YLACAKIGAIFNPINFRLK 88 (516)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCEEEEEECCCCC
T ss_conf 999999999997--695987999999489699-9999-9999984909963189999
No 107
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=39.08 E-value=26 Score=14.99 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999987313479976999816535899999999999828988
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGL 62 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~ 62 (418)
+.+.+++|..|. .++|+|||.|.|..+-..+-++ ..-++.++||-+
T Consensus 123 ~~~v~rlA~~L~--~~GV~~GDrVai~lpn~~E~vv--a~LA~~k~GAv~ 168 (652)
T PRK03584 123 RRQVAALAQALR--ALGVGPGDRVAAYLPNIPETVV--AMLATASLGAIW 168 (652)
T ss_pred HHHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHHH--HHHHHHHCCCEE
T ss_conf 999999999999--7598999999998789899999--999999639288
No 108
>TIGR01344 malate_syn_A malate synthase A; InterPro: IPR006252 These sequences represent plant malate synthase and one of two bacterial forms, designated malate synthase A. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle.
Probab=39.06 E-value=19 Score=15.99 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 699999999999999873
Q gi|255764478|r 10 HVDEFLLEKLAKVALQVG 27 (418)
Q Consensus 10 ~m~~~~L~kyA~llV~~~ 27 (418)
+|+.+.|+.|.++||++|
T Consensus 287 TM~kpFl~AYs~lLI~TC 304 (522)
T TIGR01344 287 TMDKPFLNAYSKLLIQTC 304 (522)
T ss_pred ECCCHHHHHHHHHHHHHC
T ss_conf 548476889999997401
No 109
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=39.06 E-value=26 Score=14.99 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 31347997699981653589999999999982898868987274
Q gi|255764478|r 27 GVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 27 ~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
.+.+.+|+.|++.+-+- -+.+..+...||+||++.+..+
T Consensus 68 al~ig~GDeVI~ps~Tf-----vATan~i~~~Ga~PVFvDid~~ 106 (374)
T COG0399 68 ALAIGPGDEVIVPSFTF-----VATANAVLLVGAKPVFVDIDPD 106 (374)
T ss_pred HCCCCCCCEEEECCCCH-----HHHHHHHHHCCCEEEEEECCCC
T ss_conf 64879999799368753-----9889999976996799964764
No 110
>PRK12492 acyl-CoA synthetase; Provisional
Probab=38.77 E-value=27 Score=14.96 Aligned_cols=51 Identities=16% Similarity=-0.009 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+-+++|..|... ++|++|+.|.|..+-..+-++ ..-++.++||-+|.++.
T Consensus 57 ~~s~~lA~~L~~~-~Gv~~GDrVai~~~ns~e~v~--~~la~~k~Gav~vplnp 107 (562)
T PRK12492 57 RHSAAFAAYLQQH-TDLVPGDRIAVQMPNVLQYPI--AVFGALRAGLIVVNTNP 107 (562)
T ss_pred HHHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHH--HHHHHHHHCEEEEECCC
T ss_conf 9999999999880-098999999999389799999--99999984919980098
No 111
>PRK06188 acyl-CoA synthetase; Validated
Probab=38.62 E-value=27 Score=14.95 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+.+++|..|.+ ++|++|+.|.|..+...+ ++.+ .-++.++||-+|.+..
T Consensus 43 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e-~v~~-~lA~~~~Gav~vpl~~ 92 (522)
T PRK06188 43 DRISQYIQAFEA--LGLGRGDAVALLSLNRPE-VLMA-IGAAQLLGLRRTALHP 92 (522)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCEEEEEECC
T ss_conf 999999999997--494987999999189699-9999-9999985959997689
No 112
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=38.47 E-value=27 Score=14.93 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=31.4
Q ss_pred CHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf 015540699999999999999873134799769998165358999999999998289
Q gi|255764478|r 4 SISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA 60 (418)
Q Consensus 4 ~~~~~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA 60 (418)
=..+...++++.+++.++++.+- + +|.+..--...-.++.+.......|-
T Consensus 11 i~~t~~~ld~~~i~~~~~~I~~a------~-~I~~~G~G~Sg~va~~~a~rl~~lG~ 60 (179)
T cd05005 11 IENVADKIDEEELDKLISAILNA------K-RIFVYGAGRSGLVAKAFAMRLMHLGL 60 (179)
T ss_pred HHHHHHHCCHHHHHHHHHHHHCC------C-CEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 99999976999999999999749------9-48999856258779999999973598
No 113
>PRK12476 acyl-CoA synthetase; Provisional
Probab=38.07 E-value=27 Score=14.89 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 99999999999987313479976999816535899999999999828988689
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSV 65 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v 65 (418)
+.+.+++|..| +.+ ++|||.|.|..+-. .+++.++. ++.++||-+|.+
T Consensus 75 ~~ra~~lA~~L-~~~--v~~GDrVal~~~~s-~e~vva~l-ailkaGav~VPl 122 (612)
T PRK12476 75 GVRLRAVGARL-QQV--TGRGDRVAILAPQG-LDYVAGFF-AAIKAGTIAVPL 122 (612)
T ss_pred HHHHHHHHHHH-HHC--CCCCCEEEEECCCC-HHHHHHHH-HHHHHCEEEEEC
T ss_conf 99999999999-857--99999999987895-99999999-999979399831
No 114
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=37.92 E-value=27 Score=14.87 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 4379999988642898526879998668
Q gi|255764478|r 303 SKGEEMLNKILDIDEGARRLGEVALVPH 330 (418)
Q Consensus 303 ~~~~~~l~~~l~~d~~a~~igE~~ig~n 330 (418)
+.....+.++++. -|+.-+|=..++-.
T Consensus 129 GgT~~a~~~Ll~~-~ga~vvg~~~~ie~ 155 (179)
T COG0503 129 GGTALALIELLEQ-AGAEVVGAAFVIEL 155 (179)
T ss_pred CHHHHHHHHHHHH-CCCEEEEEEEEEEE
T ss_conf 6789999999998-89989999999972
No 115
>PRK05850 acyl-CoA synthetase; Validated
Probab=37.82 E-value=27 Score=14.86 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999999999999873134799769998165358999999999998289886898
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
+.+.+++|..|...| ++||.|.|..+... +++.+ .-++.++||-+|.+.
T Consensus 45 ~~~a~~lA~~L~~~G---~~GDrVai~~~n~~-e~vva-~lA~~~aGav~VPl~ 93 (581)
T PRK05850 45 YRRTLNVAEELRRHG---STGDRAVILAPQGL-EYIVA-FLGALQAGLIAVPLS 93 (581)
T ss_pred HHHHHHHHHHHHHCC---CCCCEEEEEECCCH-HHHHH-HHHHHHHCEEEEECC
T ss_conf 999999999999769---99898999958989-99999-999998596997248
No 116
>PRK10646 putative ATPase; Provisional
Probab=37.67 E-value=28 Score=14.85 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHHHHHHHH
Q ss_conf 069999999999999987313479976999816535--89999999999
Q gi|255764478|r 9 AHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSA--LPLARLITKHA 55 (418)
Q Consensus 9 ~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a--~~l~ral~~aa 55 (418)
+-=|+..-.++|+.+-+ .+++|+.|++..+..+ .-|+|.+.++.
T Consensus 7 ~L~de~~T~~lg~~la~---~l~~g~vi~L~G~LGaGKTtf~r~i~~~l 52 (153)
T PRK10646 7 PLPDEQATLDLGERVAK---ACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred ECCCHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89899999999999997---68999799998888789999999999984
No 117
>PRK08452 flagellar protein FlaG; Provisional
Probab=37.49 E-value=14 Score=16.85 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 99999999999997301684799997699649999558
Q gi|255764478|r 196 WAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAE 233 (418)
Q Consensus 196 w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~ 233 (418)
=++..++++.+++.||.. + ..-+|+|.|++.+
T Consensus 50 ~e~~kekL~eiv~~LNe~----M--~~l~t~L~Fs~de 81 (126)
T PRK08452 50 NEQLKKKLEDLTEKLNEE----M--KRLDTNIRFGYND 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHH----H--HHHCCCCEEEEEC
T ss_conf 799999999999999999----9--8707885267606
No 118
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=37.39 E-value=28 Score=14.82 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=31.0
Q ss_pred EEEEEEEEE-EEEC----CCCEECCEEEEEECCEEEEEECCCHH------HHHHHHHH
Q ss_conf 418999700-3303----54022686999978899999854379------99998864
Q gi|255764478|r 268 VEGYATSTK-PLVY----QGMLIENIRVRFDQGRVVEASASKGE------EMLNKILD 314 (418)
Q Consensus 268 vnG~i~~d~-p~~~----~G~~~~~~~l~f~~G~vv~~~a~~~~------~~l~~~l~ 314 (418)
+.|.|.|.. .+.| .-.+-+++.|+++.|.-|-+=|..|. .+|.++.+
T Consensus 1163 ~~G~Ief~nV~F~Ypsrp~~pVLk~lsf~I~~GqkVaiVGrSGsGKSTii~lL~Rfyd 1220 (1467)
T PTZ00265 1163 IKGKIDIKDVNFRYISRPNVPIYKDLSFSCDSKKTTAIVGETGSGKSTFMNLLLRFYD 1220 (1467)
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8870899989998289995920188459977998899989999839999999997763
No 119
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=37.37 E-value=28 Score=14.81 Aligned_cols=13 Identities=0% Similarity=0.194 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999730168
Q gi|255764478|r 202 FLHQKSQWLSQRD 214 (418)
Q Consensus 202 ~~~~~~~~Ln~~~ 214 (418)
.++++++.+-.++
T Consensus 297 ~I~~lA~~~a~~~ 309 (609)
T cd02769 297 TIRELARRFASKR 309 (609)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998369
No 120
>pfam11525 CopK Copper resistance protein K. CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site.
Probab=37.23 E-value=23 Score=15.45 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=12.2
Q ss_pred CCEEEEEECCEEEEEECCCHHHHHHHHHHC
Q ss_conf 686999978899999854379999988642
Q gi|255764478|r 286 ENIRVRFDQGRVVEASASKGEEMLNKILDI 315 (418)
Q Consensus 286 ~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~ 315 (418)
.+-.++-+||+-+-.++.+-+. |.++|..
T Consensus 40 ~g~~meT~DG~kI~m~gdEVaR-L~~~l~k 68 (73)
T pfam11525 40 EGMVMETTDGQKIMMHGDEVAR-LDNYLRK 68 (73)
T ss_pred CCCEEEECCCCEEEECCHHHHH-HHHHHHC
T ss_conf 9837880589678861507776-8899861
No 121
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=36.70 E-value=20 Score=15.82 Aligned_cols=191 Identities=17% Similarity=0.151 Sum_probs=101.8
Q ss_pred HHHCCCHHHHHHCCHHHHHHHHHHHHC-CCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEE
Q ss_conf 760598789862433679999999847-978999815973243079988999888988999899999984588735-999
Q gi|255764478|r 76 LYKYGADYAFDRVADWFCEGLAKAYSD-NTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINW-SIV 153 (418)
Q Consensus 76 ~~~~a~~e~l~~~p~~~~~~~~~~~~~-~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W-~i~ 153 (418)
.+.|-.+|-|.. ..+.+++++ ..+.++|- .+=.|+-|-+-+++..+..-.-.......- .||
T Consensus 105 ~LLYvAPERL~~------~~Fl~~L~~~~i~L~AvD----------EAHCvSQWGHDFRPeY~~L~~l~~~fp~~P~~iA 168 (607)
T TIGR01389 105 KLLYVAPERLEQ------DYFLNMLKRLTIALLAVD----------EAHCVSQWGHDFRPEYRRLGELAERFPQVPTRIA 168 (607)
T ss_pred EEEEECCHHHHH------HHHHHHHHCCCCEEEEEE----------CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 577516713211------899988731993089983----------2502166888875658999999986789866998
Q ss_pred ECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 65998999873689997789999999999997426659799999999999999997301684799997699649999558
Q gi|255764478|r 154 PFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAE 233 (418)
Q Consensus 154 ~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~ 233 (418)
.-+|. . .+..+.+++.|+=.+...+..+-.--+|.|++.+
T Consensus 169 LTATA------------d----------------------------~~t~~DI~~~L~L~~~~~f~~SFdRpNl~~~v~~ 208 (607)
T TIGR01389 169 LTATA------------D----------------------------AETRQDIVELLRLKDANEFISSFDRPNLRFSVVK 208 (607)
T ss_pred EECCC------------C----------------------------HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 72489------------9----------------------------8789999997088986541256775114334312
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECCCHHHHHHHHH
Q ss_conf 82622788602589714686786316951314734189997003303540226869999788999998543799999886
Q gi|255764478|r 234 GHRWSGGSSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLNKIL 313 (418)
Q Consensus 234 ~~~w~~~~~~~~~G~~~~~NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~~~l~~~l 313 (418)
.. +...|. -.|..-..++-.|+||..- -+.-|-+.+.|
T Consensus 209 k~----------n~~~~l------~~yl~~~~~G~SGIIYa~s--------------------------R~~VE~~~~~L 246 (607)
T TIGR01389 209 KN----------NKKKFL------LEYLKKHREGQSGIIYASS--------------------------RKKVEELAERL 246 (607)
T ss_pred HC----------CCCHHH------HHHHHCCCCCCCEEEECCC--------------------------HHHHHHHHHHH
T ss_conf 03----------781368------9997507999534787677--------------------------04589999999
Q ss_pred HCCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEECC-CCC-CEECCCCCCCCCCCCCCCCHHHHHHCCCCEEE----EEE
Q ss_conf 428985268799986686200110120033232057-526-41226775000367667883443206985012----458
Q gi|255764478|r 314 DIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDEN-AAS-HIAFGQCYSKCFKKPDNALDNWLEERGGNSSI----THI 387 (418)
Q Consensus 314 ~~d~~a~~igE~~ig~n~~~i~~~~~l~~n~L~DEk-~~~-H~A~G~~y~~~~~~~~~~~~~~~~~~g~n~S~----~H~ 387 (418)
.+..=+--.-|=|+..+..+-++-. | |+||. +-+ .+||| .|+|.|- +|.
T Consensus 247 ~s~G~~A~~YHAGL~~~~R~e~Q~~--F---l~d~~~vmVAT~AFG--------------------MGIdKpnVRFViH~ 301 (607)
T TIGR01389 247 ESQGISALAYHAGLSNKVRAENQED--F---LYDDVKVMVATNAFG--------------------MGIDKPNVRFVIHA 301 (607)
T ss_pred HHCCCCEEECCCCCCHHHHHHHHHH--H---HHHCCEEEEEEECCC--------------------CCCCCCCCCEEEEE
T ss_conf 7479620403679877689999754--4---462554888871235--------------------87478765488863
Q ss_pred EE
Q ss_conf 79
Q gi|255764478|r 388 DW 389 (418)
Q Consensus 388 D~ 389 (418)
|+
T Consensus 302 d~ 303 (607)
T TIGR01389 302 DM 303 (607)
T ss_pred CC
T ss_conf 68
No 122
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=36.68 E-value=29 Score=14.74 Aligned_cols=12 Identities=25% Similarity=0.130 Sum_probs=7.1
Q ss_pred EEEEECCCHHHH
Q ss_conf 599965998999
Q gi|255764478|r 150 WSIVPFPSCAWA 161 (418)
Q Consensus 150 W~i~~~Pt~awA 161 (418)
-+|+.+|...+.
T Consensus 114 D~IvPVPlh~~R 125 (227)
T PRK11595 114 DRIVSVPLWQRR 125 (227)
T ss_pred CEEEECCCCHHH
T ss_conf 848723899899
No 123
>PRK09814 hypothetical protein; Provisional
Probab=36.68 E-value=29 Score=14.74 Aligned_cols=83 Identities=7% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCH-HHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHH
Q ss_conf 999999999987313479976999816535-8999999999998289886898727489899760598789862433679
Q gi|255764478|r 15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSA-LPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFC 93 (418)
Q Consensus 15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a-~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~ 93 (418)
....+...+......|++|+.|+++.|.-. ..+...+.......|++- +..+.|=+- +|+...+. +..
T Consensus 47 ~~~~~~~~~~~i~~~l~~gDivi~QyP~~~~~~~~~~l~~~lk~~~~K~-i~~IHDie~--LR~~~~~~--------~~~ 115 (337)
T PRK09814 47 SLAERSQRIDGILASLNRGDIVVFQYPTYNGFEFDLLFIDKLKKKQIKI-IILIHDIEP--LRFGKSNY--------YLM 115 (337)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEE-EEEECCCHH--HHCCCCCH--------HHH
T ss_conf 2999999999999577999999997898707889999999999759879-999776589--86567770--------367
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999999847978999
Q gi|255764478|r 94 EGLAKAYSDNTALLS 108 (418)
Q Consensus 94 ~~~~~~~~~~~a~i~ 108 (418)
....+++...|.+|+
T Consensus 116 ~~ei~~ln~aD~iIv 130 (337)
T PRK09814 116 KEEIDMLNLSDVVIV 130 (337)
T ss_pred HHHHHHHHHCCEEEE
T ss_conf 999999852899997
No 124
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=36.66 E-value=29 Score=14.74 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHHHHHHHHH
Q ss_conf 999999999999987313479976999816535--899999999999
Q gi|255764478|r 12 DEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSA--LPLARLITKHAY 56 (418)
Q Consensus 12 ~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a--~~l~ral~~aa~ 56 (418)
++.-..++|+.+-+ .+++|+.|++..|..| ..|+|.+.++.-
T Consensus 7 ~~~~t~~lg~~l~~---~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 7 DEEATLALGERLAE---ALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999996---578998899977876885999999999749
No 125
>PRK06178 acyl-CoA synthetase; Validated
Probab=36.27 E-value=29 Score=14.70 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
+.+-+++|..|.. ++|++||.|.|..+-..+ ++.+ .-++.++||-+|.+...
T Consensus 65 ~~~~~~lA~~L~~--~Gv~~GDrVai~~~n~~e-~v~a-~lA~~~~Gav~vpl~~~ 116 (567)
T PRK06178 65 DELSDRFAALLAQ--HGVGPGDRVAVFLPNCPQ-FHIV-FFGILKLGAVHVPVSPL 116 (567)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCCEEEEECCC
T ss_conf 9999999999997--595998999999388399-9999-99999849199956898
No 126
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.26 E-value=29 Score=14.70 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=25.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf 76999816535899999999999828988689872748
Q gi|255764478|r 34 QHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE 71 (418)
Q Consensus 34 e~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~ 71 (418)
-.+|..+...+..=+-.|++...+.|| .|.+.++...
T Consensus 73 kIlLgVtGsIAAYKa~~LvR~L~k~Ga-~V~vvmT~~A 109 (476)
T PRK13982 73 RITLIIGGGIAAYKALDLIRRLKERGA-EVRCVLTKAA 109 (476)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCC-EEEEEECHHH
T ss_conf 799996748999999999999997899-8999978778
No 127
>TIGR00632 vsr DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine . GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine . The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology . ; GO: 0004519 endonuclease activity, 0006298 mismatch repair.
Probab=36.13 E-value=18 Score=16.17 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=17.1
Q ss_pred EEEEEECCCCEECCCC---CCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 4999955882622788---60258971468678631695131
Q gi|255764478|r 226 SLKVGLAEGHRWSGGS---SIAQNGIMCNPNIPTEEVFTAPH 264 (418)
Q Consensus 226 DLt~~l~~~~~w~~~~---~~~~~G~~~~~NlP~GEVftaP~ 264 (418)
||-|.--.=-+..+|+ +..|+-. +-.+-|-+=|++|+
T Consensus 75 D~vf~~~k~~iFidGCFWHg~~C~~~--~~~p~s~~~fW~~K 114 (143)
T TIGR00632 75 DIVFKEYKVVIFIDGCFWHGHDCDIL--GKVPKSRKDFWSPK 114 (143)
T ss_pred CEEECCCEEEEEECCCEECCCCCCCC--CCCCCCCHHCCHHH
T ss_conf 54434735888602730058767401--47886642303688
No 128
>PRK06839 acyl-CoA synthetase; Validated
Probab=35.79 E-value=29 Score=14.65 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 99999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
+.+++|.-|.+ .+++++|+.|.|..+-..+-++ ..-++.++||-+|.+....+
T Consensus 36 ~~~~lA~~L~~-~~Gv~~Gd~V~i~~~n~~~~v~--~~lA~~~~Gav~vpl~~~~~ 88 (496)
T PRK06839 36 YVSKVAAYFIY-ELNVKKGERIAILSQNSLEYIV--LLFAIAKVECIAVPLNIRLT 88 (496)
T ss_pred HHHHHHHHHHH-HHCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEEECCCCC
T ss_conf 99999999889-5297998999999389899999--99999984929996589999
No 129
>KOG0572 consensus
Probab=35.67 E-value=30 Score=14.63 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHH----HHHHH----CCCCCCEEEEECCCCHH------HH--HHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf 9999999999999----98731----34799769998165358------99--999999999828988689872748989
Q gi|255764478|r 11 VDEFLLEKLAKVA----LQVGV----NIQEGQHLIVMAPVSAL------PL--ARLITKHAYMLGAGLVSVFYKDSEATL 74 (418)
Q Consensus 11 m~~~~L~kyA~ll----V~~~l----niqkGe~VlI~~d~~a~------~l--~ral~~aa~~~GA~~V~v~~~d~~~~r 74 (418)
++|..|+|+.--+ ++|++ .+..=|..++.++..+. .| ...+-++..+.|- .+-+-+|.++-.
T Consensus 58 Fte~~l~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~--~l~T~SDSElil 135 (474)
T KOG0572 58 FTEDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGV--GLNTSSDSELIL 135 (474)
T ss_pred HCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCC--CCCCCCCHHHHH
T ss_conf 257778518554021113126665321025565587247722787306732366999999986075--014688289999
Q ss_pred HHHHCCCHHHHHH-CCHHHHHHHHHHHH
Q ss_conf 9760598789862-43367999999984
Q gi|255764478|r 75 MLYKYGADYAFDR-VADWFCEGLAKAYS 101 (418)
Q Consensus 75 ~~~~~a~~e~l~~-~p~~~~~~~~~~~~ 101 (418)
..+.++++..+.. .|+|..+ ....++
T Consensus 136 ~~~a~~~~~~~~~~~~d~~~r-i~~~~~ 162 (474)
T KOG0572 136 QLIAYAPEDVYRVDAPDWFAR-IRDVME 162 (474)
T ss_pred HHHHHCHHHHHCCCCCCHHHH-HHHHHH
T ss_conf 999736576622447638999-999998
No 130
>PRK08314 acyl-CoA synthetase; Validated
Probab=35.59 E-value=30 Score=14.63 Aligned_cols=51 Identities=18% Similarity=0.059 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+.+++|.-|.+ -++|++|+.|.|..+-..+-+ . +.-++.++||-+|.+..
T Consensus 43 ~~~~~lA~~L~~-~~Gv~~Gd~V~i~~~n~~e~~-~-~~lA~~~~Gav~vpl~~ 93 (544)
T PRK08314 43 DEAERLAGYLQQ-KCGVKKGDRVLLYMQNSPQFI-I-AYYAILRANAVVVPVNP 93 (544)
T ss_pred HHHHHHHHHHHH-HHCCCCCCEEEEEECCCHHHH-H-HHHHHHHHCCEEEEECC
T ss_conf 999999999999-539899899999908979999-9-99999985929997799
No 131
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=35.33 E-value=30 Score=14.60 Aligned_cols=51 Identities=14% Similarity=-0.104 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|.+ .+|++||.|.|..+...+- + ..+-++.++||-+|.++..
T Consensus 47 ~~~~~lA~~L~~--~Gv~~GdrVai~~~n~~e~-v-~a~la~~~~Gav~vpl~~~ 97 (540)
T PRK06018 47 QRALKVSQRLDR--DGIKLGDRVATIAWNTWRH-L-EAWYGIMGIGAICHTVNPR 97 (540)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEECCCCHHH-H-HHHHHHHHHCEEEEEECCC
T ss_conf 999999999997--6959879999990897999-9-9999999859499935899
No 132
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase; InterPro: IPR012749 This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family..
Probab=35.31 E-value=30 Score=14.60 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHH
Q ss_conf 99999999998731347997699981653589999999999982898868987274898
Q gi|255764478|r 15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEAT 73 (418)
Q Consensus 15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~ 73 (418)
-|+ +|-+|+ +||+||.|+.=+-+ | ...+-|..-+||+.|+|+++.+.++
T Consensus 58 aLE-maAlL~----Di~~GDEVIMPSyT----F-VSTANAFvLRGa~~vFVDir~dTmN 106 (376)
T TIGR02379 58 ALE-MAALLL----DIQPGDEVIMPSYT----F-VSTANAFVLRGAKIVFVDIRPDTMN 106 (376)
T ss_pred HHH-HHHHHH----CCCCCCEEECCCCH----H-HHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 999-999983----04688836757514----5-7766778672882799960420004
No 133
>PRK08279 acyl-CoA synthetase; Validated
Probab=35.15 E-value=30 Score=14.58 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|.. .+|++||.|.|..+-..+- +.+ .-++.++||-+|.++..
T Consensus 75 ~~a~~lA~~L~~--~Gv~~GDrVai~l~ns~e~-vva-~lAi~kaGav~vpln~~ 125 (602)
T PRK08279 75 AWANRYAHWAAA--RGVGKGDVVALMMENRPEY-LAA-WLGLAKLGVVVALLNTQ 125 (602)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHH-HHH-HHHHHHHCEEEEEECCC
T ss_conf 999999999997--5969989999992884999-999-99999859099731877
No 134
>PRK13382 acyl-CoA synthetase; Provisional
Probab=34.68 E-value=31 Score=14.53 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
+.+-+++|.-|.. ++|++|+.|.|..+...+ ++.+ .-++.++||-+|.++...+
T Consensus 75 ~~~~~~lA~~L~~--~Gv~~GdrVai~~~ns~e-~v~a-~lA~~k~Gav~vpl~~~~~ 128 (540)
T PRK13382 75 DERSDALAAALQA--LPIGEPRVVGIMCRNHRG-FVEA-LLAANRIGADILLLNTSFA 128 (540)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHH-HHHHHHHCCEEEEECCCCC
T ss_conf 9999999999997--595886999999189699-9999-9999986919993689999
No 135
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=34.66 E-value=31 Score=14.53 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=6.9
Q ss_pred CCCCCCCCCCEEEE
Q ss_conf 14686786316951
Q gi|255764478|r 249 MCNPNIPTEEVFTA 262 (418)
Q Consensus 249 ~~~~NlP~GEVfta 262 (418)
.+...+..||+.+-
T Consensus 216 ~~irdv~PGEiv~i 229 (484)
T PRK07272 216 EFVRDVQPGEVVVI 229 (484)
T ss_pred EEEEECCCCEEEEE
T ss_conf 69984389769999
No 136
>PRK06187 acyl-CoA synthetase; Validated
Probab=34.55 E-value=31 Score=14.52 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
.+.+++|..|.+ .++++|+.|.|..+...+- +.+ .-++.++||-+|.+...
T Consensus 39 ~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~-i~~-~lA~~~~Gav~vpl~~~ 89 (520)
T PRK06187 39 ERVNRLANALRA--LGVKKGDRVAVFGWNSHEY-LEA-YFAVPKIGAVLHPVNWR 89 (520)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHH-HHH-HHHHHHHCCEEEEECCC
T ss_conf 999999999997--5958859999993898999-999-99999859399962888
No 137
>PRK06164 acyl-CoA synthetase; Validated
Probab=34.49 E-value=31 Score=14.51 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
..+.+++|..|.+ .+|++||.|.|..+...+-++ +.-++.++||-+|.+..
T Consensus 42 ~~~~~~~A~~L~~--~Gi~~Gd~V~i~~~n~~e~~~--~~lA~~~~Gav~vpi~~ 92 (541)
T PRK06164 42 RALVDRLAAWLAA--QGVRRGDRVAVWLPNCIEWVV--LFLACARLGATVLAVNT 92 (541)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECC
T ss_conf 9999999999997--394985999999489799999--99999985909997589
No 138
>PRK07769 acyl-CoA synthetase; Validated
Probab=34.08 E-value=31 Score=14.46 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 9999999999987313479976999816535899999999999828988689
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSV 65 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v 65 (418)
.+.+++|..|- .. +++|+.|.|..+.. .+++.+++ ++.++||-+|.+
T Consensus 61 ~ra~~lA~~L~--~~-v~~GDrVal~~~n~-~e~vva~l-a~l~aGav~VPl 107 (629)
T PRK07769 61 ARNRAVGARLQ--QV-TQPGDRVAILCPQN-LDYLISFF-GALYAGRIAVPL 107 (629)
T ss_pred HHHHHHHHHHH--HC-CCCCCEEEEECCCC-HHHHHHHH-HHHHHCEEECCC
T ss_conf 99999999998--57-99999899987887-99999999-999859799126
No 139
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=33.27 E-value=32 Score=14.38 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=4.3
Q ss_pred CCCCCCEEEE
Q ss_conf 6786316951
Q gi|255764478|r 253 NIPTEEVFTA 262 (418)
Q Consensus 253 NlP~GEVfta 262 (418)
.+..||+.+.
T Consensus 207 dv~PGEii~i 216 (442)
T PRK08341 207 DVRPGEVFVV 216 (442)
T ss_pred ECCCCEEEEE
T ss_conf 7369848997
No 140
>pfam02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
Probab=33.08 E-value=32 Score=14.36 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHH
Q ss_conf 699999999999999873134799769998165--358999999999998289886898727489899760598789862
Q gi|255764478|r 10 HVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDR 87 (418)
Q Consensus 10 ~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~ 87 (418)
.+++..+.++|.-+.++--+-.++..|+|-.|. .+..|.+++.......|...+.+.. .|.
T Consensus 17 ~lt~~~~~~i~~a~~~~l~~~~~~~~I~ig~D~R~ss~~~~~~~~~gl~~~G~~v~~~g~------------~pT----- 79 (138)
T pfam02878 17 ELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARALAAGLAANGVEVILLGL------------LPT----- 79 (138)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCC------------CCC-----
T ss_conf 889999999999999999864899979999799677999999999970441978963588------------798-----
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECC-CCHHHCCC
Q ss_conf 4336799999998479789998159-73243079
Q gi|255764478|r 88 VADWFCEGLAKAYSDNTALLSISGD-NPLLLVNE 120 (418)
Q Consensus 88 ~p~~~~~~~~~~~~~~~a~i~i~~~-np~~l~~v 120 (418)
|- ..... ...+.++-|.|+++ ||..-.++
T Consensus 80 -P~--~~~~v-~~~~~~~Gi~ITASHNP~~~nGi 109 (138)
T pfam02878 80 -PA--LSFAT-RKLNADGGIMITASHNPPDYNGI 109 (138)
T ss_pred -HH--HHHHH-HHCCCCEEEEEECCCCCCCCCEE
T ss_conf -19--99999-96169749999827899753569
No 141
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=33.02 E-value=32 Score=14.35 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=24.4
Q ss_pred EEEEEECCCEEEEEEEECCCCEEEEEECCEE
Q ss_conf 5879967881999998179959998867845
Q gi|255764478|r 386 HIDWMIGSGDMNVDGLTKNGVLVPIMRGGEW 416 (418)
Q Consensus 386 H~D~~~~~~~i~vdgi~~dG~~~~i~~~G~~ 416 (418)
-=|+++.++++.|..+...|+. +++||+-
T Consensus 352 dADlVi~D~dl~v~~v~~~G~~--v~~~~~~ 380 (387)
T cd01308 352 DADLVILDKDLDINSVIAKGQI--MVRNGKL 380 (387)
T ss_pred CCCEEEECCCCCEEEEEECCEE--EEECCEE
T ss_conf 2638998999986589998899--9999988
No 142
>PRK07529 acyl-CoA synthetase; Validated
Probab=32.98 E-value=33 Score=14.34 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999873134799769998165358999999999998289
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA 60 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA 60 (418)
.+.+++|..|.. ++|++|+.|.|..+-..+ ++-++.- +.++|+
T Consensus 66 ~~~~~lA~~L~~--~Gv~~GDrVai~lpN~~E-~v~a~la-~~~~Gi 108 (632)
T PRK07529 66 ADVTRTANLLHS--LGVGPGDVVAFLLPNLPE-THFALWG-GEAAGI 108 (632)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEECCCHHH-HHHHHHH-HHHHCE
T ss_conf 999999999997--396998999999388199-9999999-998729
No 143
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.48 E-value=33 Score=14.29 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf 2015540699999999999999873134799769998165358999999999998289
Q gi|255764478|r 3 KSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA 60 (418)
Q Consensus 3 ~~~~~~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA 60 (418)
+=..+...+|++.+++.++.+.+ -.+|.+..--..-.+++.+.......|-
T Consensus 7 ei~~t~~~id~~~i~~~v~~I~~-------a~~I~v~G~G~Sg~ia~~~a~rL~~~G~ 57 (179)
T TIGR03127 7 EISQVASRIDEEELDKLADKIIK-------AKRIFVAGAGRSGLVGKAFAMRLMHLGF 57 (179)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 99999996699999999999973-------9909999955439999999999985197
No 144
>pfam00718 Polyoma_coat Polyomavirus coat protein.
Probab=32.23 E-value=33 Score=14.26 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEECCCCCCEECCC
Q ss_conf 28985268799986686200110120033232057526412267
Q gi|255764478|r 315 IDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQ 358 (418)
Q Consensus 315 ~d~~a~~igE~~ig~n~~~i~~~~~l~~n~L~DEk~~~H~A~G~ 358 (418)
..||.||.|-+-=|.+.-|.-+.+--.--+|.|||.-|-+-.|+
T Consensus 192 kNENtRYfG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd 235 (296)
T pfam00718 192 KNENTRYFGTYTGGTNTPPVLQFTNTVTTVLLDENGVGPLCKGD 235 (296)
T ss_pred CCCCCEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf 57673167764078789972875375048877578853567078
No 145
>PRK07798 acyl-CoA synthetase; Validated
Probab=32.08 E-value=34 Score=14.25 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999999873134799769998165358999999999998289886898
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
.+.+++|.-|. .++++||+.|.|..+...+-++ +.-++.++||-+|.+.
T Consensus 36 ~~v~~~A~~L~--~~Gi~~gdrV~i~~~n~~e~~~--~~lA~~~~Gav~vpl~ 84 (532)
T PRK07798 36 ARANRLAHYLI--DQGLGGGDKVGLYARNRIEYVE--AMLGAFKARAVPVNVN 84 (532)
T ss_pred HHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEECC
T ss_conf 99999999999--7595885999999489899999--9999998491998128
No 146
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=31.79 E-value=34 Score=14.21 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=3.8
Q ss_pred CCCCCCEEEE
Q ss_conf 3479976999
Q gi|255764478|r 29 NIQEGQHLIV 38 (418)
Q Consensus 29 niqkGe~VlI 38 (418)
++++|++|+|
T Consensus 173 ~~~~g~~VlV 182 (358)
T TIGR03451 173 GVKRGDSVAV 182 (358)
T ss_pred CCCCCCEEEE
T ss_conf 7999988999
No 147
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=31.66 E-value=34 Score=14.20 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=67.0
Q ss_pred HHHHHHCCCC-CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHH-
Q ss_conf 9987313479-97699981653589999999999982898868987274898997605987898624336799999998-
Q gi|255764478|r 23 ALQVGVNIQE-GQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAY- 100 (418)
Q Consensus 23 lV~~~lniqk-Ge~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~- 100 (418)
.|++.|.-|. |+.|+|+.--.===|+-|+++ ..||.+|++.=..+.-.|+==+.+-+....-.-+-..+.+.++-
T Consensus 151 AVhTvL~~~~~G~~vlv~GaGPiGlma~AVAK---a~GA~~Vi~~d~neyRleLAkk~Gat~~vn~~kEd~~k~v~~lt~ 227 (341)
T TIGR00692 151 AVHTVLESDLAGEDVLVIGAGPIGLMAVAVAK---AAGARNVIVIDKNEYRLELAKKMGATRVVNVAKEDLVKVVAELTS 227 (341)
T ss_pred HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH---HHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 44465257768871899857747899999987---727840599658647999998709865870101476898884038
Q ss_pred -HCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf -4797899981597324307998899988898899989999998458873599965998999873689997789999999
Q gi|255764478|r 101 -SDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLAN 179 (418)
Q Consensus 101 -~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~ 179 (418)
+-.|+++...| .|.++. . +-..++.-=|-.+.+.| +..|+++---.
T Consensus 228 geG~Dv~lEmSG-aP~A~~---------------~-----gL~~~~~gGR~~~Lglp------------p~~vtID~tNk 274 (341)
T TIGR00692 228 GEGVDVVLEMSG-APKALE---------------Q-----GLDAVANGGRVALLGLP------------PSDVTIDLTNK 274 (341)
T ss_pred CCCEEEEEECCC-CCHHHH---------------H-----HHHHHCCCCEEEECCCC------------CCCEEEEECCC
T ss_conf 896479986489-917999---------------9-----99985068808981368------------97612630374
Q ss_pred HHHHHHHCCC---CCHHHHHHHHHHHH
Q ss_conf 9999974266---59799999999999
Q gi|255764478|r 180 TIFSVSRAHC---IDPIAAWAEHNNFL 203 (418)
Q Consensus 180 ~if~a~~~d~---~Dpv~~w~~~~~~~ 203 (418)
.||++..+.+ -.+-..|.++++.+
T Consensus 275 viFKgLtI~GItGR~mfeTWy~vs~Li 301 (341)
T TIGR00692 275 VIFKGLTIKGITGRKMFETWYKVSRLI 301 (341)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 788642772000750467899999984
No 148
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=31.54 E-value=34 Score=14.19 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=4.7
Q ss_pred CCEEEEEECC
Q ss_conf 3169513147
Q gi|255764478|r 257 EEVFTAPHAR 266 (418)
Q Consensus 257 GEVftaP~~~ 266 (418)
+++|++.+.-
T Consensus 89 ~~~~~~~v~S 98 (189)
T PRK09219 89 DNVYTATVYS 98 (189)
T ss_pred CCEEEEEEEE
T ss_conf 9768999993
No 149
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=31.54 E-value=34 Score=14.19 Aligned_cols=68 Identities=25% Similarity=0.198 Sum_probs=44.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE------------ECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 69998165358999999999998289886898------------727489899760598789862433679999999847
Q gi|255764478|r 35 HLIVMAPVSALPLARLITKHAYMLGAGLVSVF------------YKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSD 102 (418)
Q Consensus 35 ~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~------------~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~ 102 (418)
.|||=|....-|=.|-+.++|++.|-+|++|. .-|...+...-.-|+++||++.- -|++ .++
T Consensus 98 lLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~LgA~deQLDFP~-----vYAS-a~~ 171 (609)
T TIGR01394 98 LLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIELGADDEQLDFPI-----VYAS-ARA 171 (609)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH-----HHHH-HCC
T ss_conf 9998578889885347899999568936999713478878837887578788885388800101256-----7665-236
Q ss_pred CCEEEE
Q ss_conf 978999
Q gi|255764478|r 103 NTALLS 108 (418)
Q Consensus 103 ~~a~i~ 108 (418)
+.|.+.
T Consensus 172 G~A~l~ 177 (609)
T TIGR01394 172 GWASLD 177 (609)
T ss_pred CCCCCC
T ss_conf 720144
No 150
>pfam09572 RE_XamI XamI restriction endonuclease. This family includes the XamI (recognizes GTCGAC but cleavage site unknown) restriction endonuclease.
Probab=31.46 E-value=34 Score=14.18 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89998999999845887359996599899987368999778999999999999742--6659799999999999999997
Q gi|255764478|r 132 YLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRA--HCIDPIAAWAEHNNFLHQKSQW 209 (418)
Q Consensus 132 ~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~--d~~Dpv~~w~~~~~~~~~~~~~ 209 (418)
..+....+..-.....+.|....-+-. +.+. .--...-+.++ --.||+.-..+..+.+.++++|
T Consensus 67 l~ki~~iI~~~lDpdiF~Wl~~g~~pt----------~~E~----~rAAtivAdrL~~ava~pi~RnaqErRQl~~I~~~ 132 (251)
T pfam09572 67 LQKVVAVIEKMLDPDRFPWVGRGRTPT----------DIER----ELAATIVADRLCGAVADPIQRNAQERRQLAAIKSW 132 (251)
T ss_pred HHHHHHHHHHHCCCCCCCEECCCCCCC----------HHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999851843010115899998----------8899----99999999999987425876646778889999999
Q ss_pred HCCCCEEEEEE
Q ss_conf 30168479999
Q gi|255764478|r 210 LSQRDFAEIRF 220 (418)
Q Consensus 210 Ln~~~~~~i~~ 220 (418)
|..+.|.++..
T Consensus 133 L~A~Gy~k~~~ 143 (251)
T pfam09572 133 LEARGYTQLAT 143 (251)
T ss_pred HHHCCCEECCC
T ss_conf 99669656467
No 151
>PRK04527 argininosuccinate synthase; Provisional
Probab=31.44 E-value=34 Score=14.17 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=25.0
Q ss_pred CCEEEEEECCEEEEEECCCH--HHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 68699997889999985437--999998864289852687999866
Q gi|255764478|r 286 ENIRVRFDQGRVVEASASKG--EEMLNKILDIDEGARRLGEVALVP 329 (418)
Q Consensus 286 ~~~~l~f~~G~vv~~~a~~~--~~~l~~~l~~d~~a~~igE~~ig~ 329 (418)
+-|+++||+|.-|.+.|..- .+++..+-+. -|..=||=+-++-
T Consensus 217 ~~v~I~Fe~G~PValnG~~~~~~eli~~LN~i-gg~hGiGRid~VE 261 (397)
T PRK04527 217 LTVTLKFVEGEAVALDGKPLPGAQILAKLNTL-FAQYGVGRGVYTG 261 (397)
T ss_pred EEEEEEEECCEEEEECCCCCCHHHHHHHHHHH-HHHCCCCCEEEEC
T ss_conf 69888887878557468447869999999998-7635628546652
No 152
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=31.40 E-value=24 Score=15.32 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=31.4
Q ss_pred HHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEE
Q ss_conf 9999742-----6659799999999999999997301684799997699649
Q gi|255764478|r 181 IFSVSRA-----HCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSL 227 (418)
Q Consensus 181 if~a~~~-----d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDL 227 (418)
+.+++-. +..||+++|+.+.+.|+++..-|.++. +|-+-+ ..||
T Consensus 246 viD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~--~~iv~N-K~Dl 294 (296)
T TIGR02729 246 VIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKP--QIIVLN-KIDL 294 (296)
T ss_pred EEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCC--EEEEEE-ECCC
T ss_conf 980687534242898889999999999975087362780--799986-0677
No 153
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=31.31 E-value=35 Score=14.16 Aligned_cols=37 Identities=5% Similarity=0.010 Sum_probs=23.2
Q ss_pred HHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCC
Q ss_conf 9873134799769998165--358999999999998289
Q gi|255764478|r 24 LQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGA 60 (418)
Q Consensus 24 V~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA 60 (418)
|+.-+-+-+||+++|.++. ....|+..+...+.+.-+
T Consensus 60 ID~l~pigkGQR~~I~~~~g~GKt~ll~~ii~~~~~~~~ 98 (274)
T cd01133 60 IDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHG 98 (274)
T ss_pred EECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 644466147857787579999823689999999985089
No 154
>PRK13820 argininosuccinate synthase; Provisional
Probab=31.17 E-value=35 Score=14.14 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=91.8
Q ss_pred CEEEEECCCCH-HHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 76999816535-89999999999982898868987274898997605987898624336799999998479789998159
Q gi|255764478|r 34 QHLIVMAPVSA-LPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGD 112 (418)
Q Consensus 34 e~VlI~~d~~a-~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~~~a~i~i~~~ 112 (418)
|.+-+++|... .+-...+-+.|.+.|++.+++...++-+... ...+++..+.|- +
T Consensus 31 eVi~~~~d~Gq~~e~~~~~~~kA~~~G~~~~viD~r~ef~~~~--------------------i~paI~ana~Ye---g- 86 (395)
T PRK13820 31 EVITVAVDVGQPEEEIKEAEEKAKKLGVKHYTIDAKEEFAKDY--------------------IFPAIKANALYE---G- 86 (395)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH--------------------HHHHHHCCCCCC---C-
T ss_conf 6999999899976776999999997099499981699999999--------------------999997087326---7-
Q ss_pred CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 73243079988999888988999899999984588735999659989998736899977899999999999974266597
Q gi|255764478|r 113 NPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDP 192 (418)
Q Consensus 113 np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~d~~Dp 192 (418)
..|. ..-.|...+.+.-..+ . .. .-+.++.-.. ..+...-+|+-. |.+--+.---|
T Consensus 87 --YpL~-tslaRplia~~~v~~A-----~--~~---ga~aiaHG~T----------GkGNDQvRFe~~-~~ap~~~iiaP 142 (395)
T PRK13820 87 --YPLG-TALARPLIAKKIVEVA-----K--KE---GASAIAHGCT----------GKGNDQLRFEAV-FRATDLDVIAP 142 (395)
T ss_pred --CCCC-CCHHHHHHHHHHHHHH-----H--HC---CCEEEEECCC----------CCCCHHHHHHHH-HHCCCCEEEEE
T ss_conf --3032-4104689999999999-----9--75---9829830777----------898709999999-86789868721
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEE---CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE
Q ss_conf 999999999999999973016847999976996499995588262---27886025897146867863169513147341
Q gi|255764478|r 193 IAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRW---SGGSSIAQNGIMCNPNIPTEEVFTAPHARRVE 269 (418)
Q Consensus 193 v~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w---~~~~~~~~~G~~~~~NlP~GEVftaP~~~~vn 269 (418)
+-+|+-. -+...+++.++. |-+++.. .-.+|+- .-.| ..++..-.+ -|-|..++|.-.+
T Consensus 143 ~R~~~~~---R~~~i~ya~~~g---I~v~~~~-~~~yS~D-~NLwg~S~Egg~LEdp-----~~~pped~~~~t~----- 204 (395)
T PRK13820 143 IRELNLT---REWEIEYAKEHG---IPVPVGK-EKPWSID-ENLWSRSIEGGKLEDP-----MFEPPEEIYAWTV----- 204 (395)
T ss_pred ECCHHHH---HHHHHHHHHHCC---CCCCCCC-CCCCCCC-CCCCCEEECCCCCCCC-----CCCCCCCCEEECC-----
T ss_conf 0453345---899999999859---9888888-8885245-5502311057876896-----5466523010047-----
Q ss_pred EEEEEEEEEECCCCEECCEEEEEECCEEEEEECCC--HHHHHHHHHH
Q ss_conf 89997003303540226869999788999998543--7999998864
Q gi|255764478|r 270 GYATSTKPLVYQGMLIENIRVRFDQGRVVEASASK--GEEMLNKILD 314 (418)
Q Consensus 270 G~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~--~~~~l~~~l~ 314 (418)
|..-.-..-+-|+++|++|.-|.+.++. ..+++..+-+
T Consensus 205 -------~p~~aPd~pe~v~I~Fe~G~PvainG~~~~~~eli~~LN~ 244 (395)
T PRK13820 205 -------SPEDAPDKPEIVEIEFEAGVPVAINGEKMEGVELIRKLNE 244 (395)
T ss_pred -------CHHHCCCCCEEEEEEEECCEEEEECCEECCHHHHHHHHHH
T ss_conf -------9667898876999999666789987978889999999999
No 155
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=31.15 E-value=35 Score=14.14 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEECCCC--CCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 999999999999999730168479999769964999955882622788--602589714686786316951314734189
Q gi|255764478|r 194 AAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGS--SIAQNGIMCNPNIPTEEVFTAPHARRVEGY 271 (418)
Q Consensus 194 ~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w~~~~--~~~~~G~~~~~NlP~GEVftaP~~~~vnG~ 271 (418)
=+|+++.++=++..++||..--..|. ..+-|+-.+. -.+.++. .+.-+| ..-+-|||+||+ +
T Consensus 83 F~f~~l~~~RdaYv~rl~~~Y~~~L~--~~~vd~i~G~---A~F~~~~kPtveV~g-----~~nttevy~A~H------I 146 (475)
T TIGR01421 83 FNFKELKEKRDAYVDRLNGIYQKNLE--KNKVDVIEGH---AEFTKDQKPTVEVNG-----KENTTEVYTAPH------I 146 (475)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCC--CCCEEEEEEE---EEECCCCCCCEEECC-----CCCCEEEEECCE------E
T ss_conf 07799987667899998887524865--0554389867---887488896347736-----424302576270------5
Q ss_pred EEEEE--EEECC-----C----CEECC-EEEEEECCEEEEEECCCHHHHHHHHHHC
Q ss_conf 99700--33035-----4----02268-6999978899999854379999988642
Q gi|255764478|r 272 ATSTK--PLVYQ-----G----MLIEN-IRVRFDQGRVVEASASKGEEMLNKILDI 315 (418)
Q Consensus 272 i~~d~--p~~~~-----G----~~~~~-~~l~f~~G~vv~~~a~~~~~~l~~~l~~ 315 (418)
++.+| |..+. | .-=++ |.|+=-=++||=+-|+--+-.|.-.|+.
T Consensus 147 liATGG~p~~phe~~IPG~elG~~SdGfF~LEElP~~~v~vGAGYIAvELAGvLh~ 202 (475)
T TIGR01421 147 LIATGGKPSIPHEENIPGAELGLDSDGFFALEELPKRVVIVGAGYIAVELAGVLHG 202 (475)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 89448724787546778401057700200220178717999073898888888731
No 156
>PRK06060 acyl-CoA synthetase; Validated
Probab=31.03 E-value=35 Score=14.13 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
+.+-+++|..|.. ..|++|+.|.|..+-.. +++.++. ++.++||-+|.++-.-
T Consensus 37 ~~ranRLA~~L~~--~GV~pGDrVal~lpns~-e~VvalL-AvlkAGaa~VPldP~~ 89 (705)
T PRK06060 37 HDGAARLGEVLRN--RGLSSGDRVLLCLPDSP-DLVQLLL-ACLARGVMAFLANPEL 89 (705)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCH-HHHHHHH-HHHHHCEEEECCCCCC
T ss_conf 9999999999998--79797999999948809-9999999-9999494784779899
No 157
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=30.84 E-value=35 Score=14.11 Aligned_cols=112 Identities=14% Similarity=0.259 Sum_probs=64.1
Q ss_pred CCCHHHHH-------------HHHHHHHHHHHHHHCCCCEE-EEEEECCCCEEEEEECCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 65979999-------------99999999999973016847-99997699649999558826227886025897146867
Q gi|255764478|r 189 CIDPIAAW-------------AEHNNFLHQKSQWLSQRDFA-EIRFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNPNI 254 (418)
Q Consensus 189 ~~Dpv~~w-------------~~~~~~~~~~~~~Ln~~~~~-~i~~~~~gTDLt~~l~~~~~w~~~~~~~~~G~~~~~Nl 254 (418)
..+|-.+| ++|.++-.++++||.++..+ +|.|.+.|.-+.|.+.+ ..+.. .|.-++
T Consensus 231 ~~~p~~a~l~~rGl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPG~gg~~sf~l~~-~~~~~---------~f~~~l 300 (366)
T PRK08247 231 VLSPFDSWLLIRGMKTLALRMRQHEENAKALAAFLNEQPGVTDVLYPGKGGMLSFRLQD-EEWVN---------PFLKSL 300 (366)
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC-HHHHH---------HHHHHC
T ss_conf 77937777886352509999999999999999998619970489569987779999788-89999---------999847
Q ss_pred CCCCEEE-EEECCCEEEEEEEEEEEECCCCEEC-CEEEEEECCEE-EEEECCCHHHHHHHHH
Q ss_conf 8631695-1314734189997003303540226-86999978899-9998543799999886
Q gi|255764478|r 255 PTEEVFT-APHARRVEGYATSTKPLVYQGMLIE-NIRVRFDQGRV-VEASASKGEEMLNKIL 313 (418)
Q Consensus 255 P~GEVft-aP~~~~vnG~i~~d~p~~~~G~~~~-~~~l~f~~G~v-v~~~a~~~~~~l~~~l 313 (418)
++|. +|-.++++=.|....++.+.....+ -...-+.+|-| +++--|.-+|++..+.
T Consensus 301 ---~l~~~a~SlGg~eSLi~~pa~~th~~~~~~~r~~~Gi~~~liRlSvGLEd~~DLi~Dl~ 359 (366)
T PRK08247 301 ---KLITFAESLGGVESFITYPATQTHMDIPEEIRIANGVCNRLLRFSVGIENVEDLKADLK 359 (366)
T ss_pred ---CCCEEECCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHH
T ss_conf ---43668126576772445764245422899999975989295999950089999999999
No 158
>PRK05605 acyl-CoA synthetase; Validated
Probab=30.52 E-value=36 Score=14.07 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999999999999873134799769998165358999999999998289886898
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
+.+.+++|..|. .++|++|+.|.|..+-..+-++ ..-++.++||-+|.++
T Consensus 61 ~~~~~~lA~~L~--~~Gv~~Gd~V~i~l~ns~e~v~--~~lA~~k~Gav~vpln 110 (571)
T PRK05605 61 GKQVRRAAAGLR--ALGVRPGDRVAIVLPNCPQHIV--AFYAVLRLGAVVVEHN 110 (571)
T ss_pred HHHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEECCC
T ss_conf 999999999999--7596998999999189799999--9999998593997108
No 159
>PRK05852 acyl-CoA synthetase; Validated
Probab=30.20 E-value=36 Score=14.04 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
+.+.+++|..|.+ .++++|+.|.|..+...+-++ ..-++.++||-+|.+....+
T Consensus 50 ~~~~~~lA~~L~~--~Gi~~Gd~V~l~~~n~~e~i~--~~lAi~~aGav~vpi~p~~~ 103 (530)
T PRK05852 50 ARLVDDLAGQLTR--SGLLPGDRVALRMGSNAEFVV--ALLAASRADLVVVPLDPALP 103 (530)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECCCCC
T ss_conf 9999999999997--596894999999388299999--99999985949997589899
No 160
>PRK06145 acyl-CoA synthetase; Validated
Probab=29.94 E-value=36 Score=14.01 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
..+.+++|..|.. .++++|+.|.|..+...+-++ +.-++.++||-+|.+....+
T Consensus 34 ~~~~~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e~v~--~~lA~~~~Gav~vpl~~~~~ 87 (497)
T PRK06145 34 HQRILQAAGMLHA--RGIGQGDVVALLMKNSAAFLE--LAFAASYLGAVFLPINYRLA 87 (497)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECCCCC
T ss_conf 9999999999997--494885999999489699999--99999985909994489899
No 161
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=29.37 E-value=37 Score=13.94 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHHHHCCCCCCEEEEECCCCH--HHHHHHHHHHH
Q ss_conf 987313479976999816535--89999999999
Q gi|255764478|r 24 LQVGVNIQEGQHLIVMAPVSA--LPLARLITKHA 55 (418)
Q Consensus 24 V~~~lniqkGe~VlI~~d~~a--~~l~ral~~aa 55 (418)
=+.++.+++||.+-+..+-.+ ..|.+.+.--.
T Consensus 17 ~~vs~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~ 50 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 1516688698199999999999999999995783
No 162
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=29.00 E-value=38 Score=13.90 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+.+++|..|. ..++++|+.|.|..+...+-++- .-++.++||-+|.+.-
T Consensus 33 ~~~~~~A~~L~--~~Gi~~gd~V~i~~~n~~e~~~~--~lA~~~~Gav~vpl~~ 82 (515)
T TIGR03098 33 ERVLALASGLR--GLGLARGERVAIYLDKRLETVTA--MFGAALAGGVFVPINP 82 (515)
T ss_pred HHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHHHH--HHHHHHHCCEEEEECC
T ss_conf 99999999999--72939959999994897999999--9999986969998689
No 163
>TIGR00068 glyox_I lactoylglutathione lyase; InterPro: IPR004361 Glyoxalase I (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway in the following reaction: glutathione + methylglyoxal = (R)-S-lactoylglutathione S-lactoylglutathione is then converted by glyoxalase II to lactic acid . Glyoxalase I is a ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. In bacteria and mammals the enzyme is a protein of about 130 to 180 residues while in fungi it is about twice as long. In these organisms the enzyme is built out of the tandem repeat of a homologous domain.; GO: 0004462 lactoylglutathione lyase activity, 0005975 carbohydrate metabolic process.
Probab=28.93 E-value=24 Score=15.29 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=20.1
Q ss_pred CCEEEEEECCEEEEEECCCHHHHHHHHHHCCCCC---CEEEEEEEECCC
Q ss_conf 6869999788999998543799999886428985---268799986686
Q gi|255764478|r 286 ENIRVRFDQGRVVEASASKGEEMLNKILDIDEGA---RRLGEVALVPHS 331 (418)
Q Consensus 286 ~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~d~~a---~~igE~~ig~n~ 331 (418)
+-+..+|..-.+++-+-..|-+-= ..-..|-|. |=-|||||+..+
T Consensus 82 E~~~W~~~~~a~iELTyNWG~~~D-~~~~Y~~G~s~PRgFGHiai~VdD 129 (183)
T TIGR00068 82 ERIAWTLSRKAVIELTYNWGTEKD-EFKGYDLGNSEPRGFGHIAIGVDD 129 (183)
T ss_pred CCEEEECCCCEEEEEEECCCCCCC-CCCCCCCCCCCCCCEEEEECCHHH
T ss_conf 206552057448888625788721-333454778888611146415046
No 164
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.65 E-value=38 Score=13.86 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=11.6
Q ss_pred HHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 9999999973016847999976
Q gi|255764478|r 201 NFLHQKSQWLSQRDFAEIRFSG 222 (418)
Q Consensus 201 ~~~~~~~~~Ln~~~~~~i~~~~ 222 (418)
+.+++.+++|.+++ +|.+-|
T Consensus 129 ~~i~~av~li~~A~--~I~i~G 148 (293)
T PRK11337 129 DEIHRAARFFYQAR--QRDLYG 148 (293)
T ss_pred HHHHHHHHHHHHCC--CEEEEE
T ss_conf 99999999998279--708998
No 165
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase; InterPro: IPR006233 Cystathionine beta-lyase (alternate name: beta-cystathionase) is one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys .; GO: 0004121 cystathionine beta-lyase activity, 0006520 amino acid metabolic process, 0005737 cytoplasm.
Probab=28.46 E-value=38 Score=13.83 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=83.8
Q ss_pred CCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf 4799769998165--35899999999999828988689872748989976059878986243367999999984797899
Q gi|255764478|r 30 IQEGQHLIVMAPV--SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALL 107 (418)
Q Consensus 30 iqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~~~a~i 107 (418)
||.||.|||+-.. .+..|...+.+ +.| |.+.|.||.+. ++..+.+++...-+|
T Consensus 91 vkaGDhvL~vdsaY~PTr~Fcd~vLk---r~g---v~~~YYDP~ig-------------------Pe~ia~Li~pnTkv~ 145 (389)
T TIGR01324 91 VKAGDHVLVVDSAYKPTRRFCDIVLK---RLG---VEVEYYDPKIG-------------------PEDIAALIKPNTKVV 145 (389)
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHH---HHC---EEEEEECCCCC-------------------HHHHHHHCCCCCEEE
T ss_conf 74388379864646115899988753---634---45887278868-------------------888987408884489
Q ss_pred EEECC--CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE---------------EEE---CCCHHHHHHHCCC
Q ss_conf 98159--732430799889998889889998999999845887359---------------996---5998999873689
Q gi|255764478|r 108 SISGD--NPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWS---------------IVP---FPSCAWAEIVYPD 167 (418)
Q Consensus 108 ~i~~~--np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~---------------i~~---~Pt~awA~~vfp~ 167 (418)
.+.+| ++.+..+|++=..++...++. .+.-.++.|. |-+ ||. +--+ ||-+
T Consensus 146 flEaP~S~TfE~qDIPaIakaA~kv~~g--------~~~miDNTWaagllFkpL~HgvdiSiqA~TKY~~-GHSD-~~~G 215 (389)
T TIGR01324 146 FLEAPASLTFEVQDIPAIAKAARKVAAG--------VVVMIDNTWAAGLLFKPLEHGVDISIQAATKYLA-GHSD-VLLG 215 (389)
T ss_pred EEECCCCCEECCCCHHHHHHHHHHCCCC--------EEEEEECCCCCHHHCCCCCCCCCEEEEECCCCCC-CCCH-HHHH
T ss_conf 9837874510358846899998641898--------2999636302001023001786368750335575-5002-4563
Q ss_pred --CCHHHHHHHHH-HHHHHHHHCCCCCHHHHH-------------HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf --99778999999-999999742665979999-------------9999999999997301684799
Q gi|255764478|r 168 --DPVPIAIAKLA-NTIFSVSRAHCIDPIAAW-------------AEHNNFLHQKSQWLSQRDFAEI 218 (418)
Q Consensus 168 --~~~~~s~~~l~-~~if~a~~~d~~Dpv~~w-------------~~~~~~~~~~~~~Ln~~~~~~i 218 (418)
...+...++|- |..+.....-..| .+| ++|.+.-=++++||.++..++-
T Consensus 216 tv~an~~~w~qL~Ge~~~~~G~~v~~D--daYt~lRGlRTlgvRL~~Hqes~laiA~WL~eqpeVar 280 (389)
T TIGR01324 216 TVAANEDAWEQLLGEASYLLGQSVDAD--DAYTVLRGLRTLGVRLKRHQESALAIAKWLEEQPEVAR 280 (389)
T ss_pred HHHHHHHHHHHHCCHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 477557899875120244416434753--48888865656643257766668999986437996555
No 166
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=28.01 E-value=18 Score=16.15 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCH
Q ss_conf 999987313479976999816535
Q gi|255764478|r 21 KVALQVGVNIQEGQHLIVMAPVSA 44 (418)
Q Consensus 21 ~llV~~~lniqkGe~VlI~~d~~a 44 (418)
++|-+..+.|++||.|+.+.|..+
T Consensus 19 QvL~di~L~i~~GEiViltGPSGS 42 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGS 42 (220)
T ss_pred EEECCCCEEECCCEEEEEECCCCC
T ss_conf 001276317717647984378898
No 167
>pfam00501 AMP-binding AMP-binding enzyme.
Probab=27.65 E-value=40 Score=13.74 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99999999999873134799769998165358999999999998289886898727
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
.+.+++|..|.+ ++|++|+.|.|..+...+-+ .+.-++.++||-+|.+....
T Consensus 7 ~~v~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e~~--~~~lA~~~~G~v~v~l~~~~ 58 (412)
T pfam00501 7 ERANRLAAALRA--LGVGPGDRVAILLPNSPEWV--VAILAVLKAGAAYVPLDPSY 58 (412)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCCEEEEECCCC
T ss_conf 999999999997--59599799999928989999--99999998696999848999
No 168
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=27.61 E-value=40 Score=13.74 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 999999999999987313479976999816535899-9999999998289886898
Q gi|255764478|r 12 DEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPL-ARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 12 ~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l-~ral~~aa~~~GA~~V~v~ 66 (418)
.+++|+=|=+.+.+.=-=++|-=.++|-.|....+. -||+.++|.++||..|++.
T Consensus 80 Te~MlkYFI~~v~~rk~~~~P~P~~~icVP~GiT~VErRAV~esA~~AGAREV~lI 135 (337)
T TIGR00904 80 TEKMLKYFIKKVHSRKSFFRPKPRIVICVPSGITPVERRAVKESALSAGAREVYLI 135 (337)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999999856775368987699985379986678999999850797078862
No 169
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=27.58 E-value=40 Score=13.73 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHHHHHHHH
Q ss_conf 999999987313479976999816535--89999999999
Q gi|255764478|r 18 KLAKVALQVGVNIQEGQHLIVMAPVSA--LPLARLITKHA 55 (418)
Q Consensus 18 kyA~llV~~~lniqkGe~VlI~~d~~a--~~l~ral~~aa 55 (418)
++|+.+-+ .+++|+.|++..+..+ .-|+|.+.++.
T Consensus 3 ~lg~~ia~---~l~~G~vi~L~G~LGaGKTtfvr~i~~~l 39 (123)
T pfam02367 3 NLGKRLAQ---LLKAGDVVLLSGDLGAGKTTFVRGLAKGL 39 (123)
T ss_pred HHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99999997---68999799998887788999999999985
No 170
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.56 E-value=40 Score=13.73 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999999998731347997699981653589999999999982898868987
Q gi|255764478|r 15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
+.+++|--+ ..+.|++||+|+++-+-.++ |...+ =+..++|+-||....
T Consensus 62 r~d~LAa~l--~~lGi~~Gd~vlvQLpN~~e-f~~~~-FALlrlGv~PVlALp 110 (542)
T COG1021 62 RADRLAAGL--RRLGIKPGDTVLVQLPNVAE-FYITF-FALLRLGVAPVLALP 110 (542)
T ss_pred HHHHHHHHH--HHCCCCCCCEEEEECCCHHH-HHHHH-HHHHHCCCCHHHCCC
T ss_conf 999998889--86288988779997796388-99999-999973750011161
No 171
>COG3665 Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=40 Score=13.72 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=15.7
Q ss_pred CEEEEEEEECCCCCHHHHCCCCCCEEEECCC
Q ss_conf 2687999866862001101200332320575
Q gi|255764478|r 320 RRLGEVALVPHSSLLSKMNTLFYDTLFDENA 350 (418)
Q Consensus 320 ~~igE~~ig~n~~~i~~~~~l~~n~L~DEk~ 350 (418)
..++-+||+. +..+.-.+ +|.||.+||+.
T Consensus 169 ~alA~~Gl~~-~~i~~~LN-~Fmnt~~de~g 197 (264)
T COG3665 169 VALAPYGLGE-PDIHTVLN-YFMNTGLDEEG 197 (264)
T ss_pred HHHCCCCCCC-CCHHHHHH-HEEECCCCCCC
T ss_conf 8741257898-85321212-21761427788
No 172
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=27.13 E-value=41 Score=13.68 Aligned_cols=53 Identities=25% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHC--------CCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999987313--------47997699981-653589999999999982898868987
Q gi|255764478|r 15 LLEKLAKVALQVGVN--------IQEGQHLIVMA-PVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 15 ~L~kyA~llV~~~ln--------iqkGe~VlI~~-d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
+|++||+-|-.-||+ +-+-.---||. ...+.+-|-.=.++|.++|-.||-+++
T Consensus 102 LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~PVKlN~ 163 (324)
T TIGR02668 102 LLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDAGLTPVKLNM 163 (324)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 48989999998285613120267886788864489986078999999999972898137888
No 173
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=26.68 E-value=41 Score=13.62 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH--HHHHHCCCCCCEEEECCHHHHH
Q ss_conf 999999999998731347997699981653589999999--9999828988689872748989
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLIT--KHAYMLGAGLVSVFYKDSEATL 74 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~--~aa~~~GA~~V~v~~~d~~~~r 74 (418)
.-|++.+..+++++-++...--= -.|.+...=-..++ ...|+.|-.-..|.|+.++..-
T Consensus 7 ~dld~~~~~~~~~~~el~~dHPG--f~D~~Yr~RR~~ia~iA~~yk~G~piP~v~YT~~E~~t 67 (298)
T cd03345 7 SELDKCHHLVTKYEPDLDLDHPG--FSDKVYRERRKLIAEIAFQYKHGDPIPRVEYTAEEIAT 67 (298)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 89998860564058656789989--98889999999999999857789978776669899999
No 174
>PRK09255 malate synthase; Validated
Probab=26.64 E-value=41 Score=13.62 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=13.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 769998165358999999999998289886898727
Q gi|255764478|r 34 QHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 34 e~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
-.|-|+.|.+. ..+-.|..-||+-++..+.|
T Consensus 88 RrVEITGP~dr-----km~inALNSgA~~~maDfED 118 (531)
T PRK09255 88 RRVEITGPVDR-----KMVINALNSGAKVFMADFED 118 (531)
T ss_pred CEEEECCCCCH-----HHHHHHHCCCCCEEEECCCC
T ss_conf 70430078978-----99999864699789843665
No 175
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=26.32 E-value=42 Score=13.58 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=13.8
Q ss_pred CCEEEEEECCEEEEEECC
Q ss_conf 686999978899999854
Q gi|255764478|r 286 ENIRVRFDQGRVVEASAS 303 (418)
Q Consensus 286 ~~~~l~f~~G~vv~~~a~ 303 (418)
..++++|++|++|.+...
T Consensus 48 ~f~~iti~dGKiv~~~yd 65 (147)
T COG4939 48 AFVTITIQDGKIVACTYD 65 (147)
T ss_pred CEEEEEEECCEEEEEEEE
T ss_conf 107999828879998855
No 176
>pfam09533 DUF2380 Predicted lipoprotein of unknown function (DUF2380). This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=26.30 E-value=42 Score=13.58 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCCCCCEEEEEECCCEEEEEEEEEEEECCCCEE
Q ss_conf 678631695131473418999700330354022
Q gi|255764478|r 253 NIPTEEVFTAPHARRVEGYATSTKPLVYQGMLI 285 (418)
Q Consensus 253 NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~ 285 (418)
+||.|-|++-|.+++.-+.++-.-+-...|..+
T Consensus 98 ~lp~GavmvFpnW~gap~~~~~p~~~l~pGrw~ 130 (220)
T pfam09533 98 GLPRGAVMVFPNWNGAPGRVIPPSPRLPPGRWE 130 (220)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 789876797347688865322887888987330
No 177
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.24 E-value=42 Score=13.57 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHHHHHCCCCCCEEEEECCCCH--HHHHHHHHH
Q ss_conf 9987313479976999816535--899999999
Q gi|255764478|r 23 ALQVGVNIQEGQHLIVMAPVSA--LPLARLITK 53 (418)
Q Consensus 23 lV~~~lniqkGe~VlI~~d~~a--~~l~ral~~ 53 (418)
|=+.++.|.+||.+.|..+..+ .-|.+.+.-
T Consensus 23 L~~vsl~I~~Ge~~aiiG~nGsGKSTLl~~l~G 55 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 624177986998999999999819999999970
No 178
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.97 E-value=42 Score=13.54 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.5
Q ss_pred HCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 1347997699981653589999999999982898868
Q gi|255764478|r 28 VNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVS 64 (418)
Q Consensus 28 lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~ 64 (418)
|+.=+|.++||+.-....-+.+++.++..+.||+.++
T Consensus 1 Mg~L~gK~~lVTGa~~~~GIG~aia~~la~~Ga~v~~ 37 (261)
T PRK08690 1 MGFLQGKKILITGMISERSIAYGIAKACREQGAELAF 37 (261)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999998899989878638999999999985999999
No 179
>PRK06710 acyl-CoA synthetase; Validated
Probab=25.94 E-value=42 Score=13.53 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999998731347997699981653589999999999982898868987
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY 67 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~ 67 (418)
.+.+++|..|. .++|++|+.|.|..+-..+-+ .++ -++.++||-+|.++.
T Consensus 57 ~~~~~lA~~L~--~~Gv~~GdrVai~~~n~~e~v-i~~-lA~~~~Gav~vpi~~ 106 (563)
T PRK06710 57 DKVKRFANYLQ--KLGVEKGDRVAIMLPNCPQAV-IGY-YGTLLAGGIVVQTNP 106 (563)
T ss_pred HHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHH-HHH-HHHHHHCEEEEEECC
T ss_conf 99999999999--759599799999928979999-999-999985959983389
No 180
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=25.84 E-value=43 Score=13.52 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=12.1
Q ss_pred CEECCCC---CCCCCCCCCCCCHHHHHHCC
Q ss_conf 4122677---50003676678834432069
Q gi|255764478|r 353 HIAFGQC---YSKCFKKPDNALDNWLEERG 379 (418)
Q Consensus 353 H~A~G~~---y~~~~~~~~~~~~~~~~~~g 379 (418)
|++++.. || |+-|=+-.++++|-+.+
T Consensus 380 HvriasP~i~~P-c~YGID~pt~~eLIA~~ 408 (470)
T COG0034 380 HVRIASPPIRYP-CFYGIDMPTREELIAAN 408 (470)
T ss_pred EEEECCCCCCCC-CCCCCCCCCHHHHHHCC
T ss_conf 998428975677-86645789989996478
No 181
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=25.41 E-value=43 Score=13.47 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf 1653589999999999982898868987274898997605
Q gi|255764478|r 40 APVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKY 79 (418)
Q Consensus 40 ~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~ 79 (418)
+++...||++.+++.|.+.|+..|.|--.|+.+-..--.+
T Consensus 23 adI~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~ 62 (247)
T COG1212 23 ADIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAF 62 (247)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 7737960789999999873787289974988999999970
No 182
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=25.37 E-value=43 Score=13.46 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCEEEEE
Q ss_conf 97146867863169513
Q gi|255764478|r 247 GIMCNPNIPTEEVFTAP 263 (418)
Q Consensus 247 G~~~~~NlP~GEVftaP 263 (418)
|-.+...++.||+.+--
T Consensus 220 g~~~irdv~PGEiv~I~ 236 (472)
T PRK05793 220 GAEFVRDIEPGEIVIID 236 (472)
T ss_pred CCEEEEECCCCEEEEEE
T ss_conf 86699816997499995
No 183
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=24.97 E-value=44 Score=13.41 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=9.1
Q ss_pred HHHHHHHCCCCCCEEEECCHHHH
Q ss_conf 99999982898868987274898
Q gi|255764478|r 51 ITKHAYMLGAGLVSVFYKDSEAT 73 (418)
Q Consensus 51 l~~aa~~~GA~~V~v~~~d~~~~ 73 (418)
|.++..+.|++ +-.-+|.++-
T Consensus 139 Lr~~L~~~G~~--F~s~sDsEvi 159 (495)
T PRK07349 139 LREELLARGCE--LTTTTDSEMI 159 (495)
T ss_pred HHHHHHHCCCC--CCCCCCHHHH
T ss_conf 99999967997--6567608999
No 184
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase; InterPro: IPR011904 Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) is a ubiquitous enzyme, found in both prokaryotes and eukaryotes, which catalyses the formation of acetyl-CoA from acetate, coenzyme A (CoA) and ATP as shown below : ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. It is especially important in eukayotic species as it is the only route for the activation of acetate to acetyl-CoA in these organisms (some prokaryotic species can also activate acetate by either acetate kinase/phosphotransacetylase or by ADP-forming acetyl-CoA synthase). Eukaryotes typically have two isoforms of acetyl-CoA synthase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. The crystal structures of a eukaryotic (Q01574 from SWISSPROT, from yeast) and bacterial (Q8ZKF6 from SWISSPROT, from Salmonella) form of this enzyme have been determined , . The yeast enzyme is trimeric, while the bacterial enzyme is monomeric. The trimeric state of the yeast protein may be unique to this organism however, as the residues involved in the trimer interface are poorly conserved in other sequences. Despite differences in the oligomeric state of the two enzyme, the structures of the monomers are almost identical. A large N-terminal domain (~500 residues) containing two parallel beta sheets is followed by a small (~110 residues) C-terminal domain containing a three-stranded beta sheet with helices. The active site occurs at the domain interface, with its contents determining the orientation of the C-terminal domain.; GO: 0003987 acetate-CoA ligase activity, 0016208 AMP binding.
Probab=24.88 E-value=44 Score=13.40 Aligned_cols=262 Identities=15% Similarity=0.180 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99999999998731347997699981653589999999999982898868987274898997605987898624336799
Q gi|255764478|r 15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCE 94 (418)
Q Consensus 15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~ 94 (418)
...|.|.+|- +.|||||.|.|--|...+-.+-- -|+-+.||-.-+|+- .|-|+-+.+
T Consensus 105 ~Vcr~An~LK---~GvkkGD~V~IYmPMiPEa~~AM--LACaRIGA~HSVVFg------------------GFSa~aL~~ 161 (643)
T TIGR02188 105 EVCRFANVLK---LGVKKGDRVAIYMPMIPEAAIAM--LACARIGAIHSVVFG------------------GFSAEALAD 161 (643)
T ss_pred HHHHHHHHHH---CCCCCCCEEEEECCCCHHHHHHH--HHHHHCCCEEEEECC------------------CCCHHHHHH
T ss_conf 9999999974---47646887899578818999999--886436852678725------------------774789988
Q ss_pred HHHHHHHCCCEEEEEECCC-CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEECCCH----HHHHHH
Q ss_conf 9999984797899981597-324307998899988898899989999998458-----873599965998----999873
Q gi|255764478|r 95 GLAKAYSDNTALLSISGDN-PLLLVNEDSDKVSRVNQAYLKAYKPALERISNF-----DINWSIVPFPSC----AWAEIV 164 (418)
Q Consensus 95 ~~~~~~~~~~a~i~i~~~n-p~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~-----~~~W~i~~~Pt~----awA~~v 164 (418)
+ +.+..|.+.|+++. ..-=+-++-+ +.+.+++... .+.=||+.-=|- .|.+
T Consensus 162 R----i~Da~ak~VITAD~g~RgGK~~~LK-------------~~VD~AL~~~~~~~~~V~~VlV~~RtG~~~~~w~~-- 222 (643)
T TIGR02188 162 R----INDAGAKLVITADEGLRGGKVIPLK-------------AIVDEALEKCPDTCPSVEKVLVVRRTGGPVVPWVE-- 222 (643)
T ss_pred H----HHCCCCCEEEECCCCCCCCCCCCHH-------------HHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC--
T ss_conf 7----5327775899437740588643036-------------89999996078674530067899855888777548--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHH--HHHCCCCEEEEEEECCCCEEEEEECCCCEECCCC
Q ss_conf 68999778999999999999742665979999999999-99999--9730168479999769964999955882622788
Q gi|255764478|r 165 YPDDPVPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNF-LHQKS--QWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGS 241 (418)
Q Consensus 165 fp~~~~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~-~~~~~--~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w~~~~ 241 (418)
+-| --|.++.+. +...+ +.||.=+--=|-||| |+ -+-++|=.+.-+|
T Consensus 223 ------------------------GRD--~wwh~l~~~~~~~~c~Pe~m~sEDPLFiLYTS-GS---TGKPKGv~HttgG 272 (643)
T TIGR02188 223 ------------------------GRD--VWWHELVAKGQSAECEPEPMDSEDPLFILYTS-GS---TGKPKGVLHTTGG 272 (643)
T ss_pred ------------------------CCC--CHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC-CC---CCCCCCCEECCHH
T ss_conf ------------------------887--60689853788782465417876602676347-87---7888721434177
Q ss_pred -----CCCCCCCCCCCCCCCCCEEEE-EECCCEEEEEEEE-EEEE-------CCCCEEC----CEEEEEECCEEEE-EEC
Q ss_conf -----602589714686786316951-3147341899970-0330-------3540226----8699997889999-985
Q gi|255764478|r 242 -----SIAQNGIMCNPNIPTEEVFTA-PHARRVEGYATST-KPLV-------YQGMLIE----NIRVRFDQGRVVE-ASA 302 (418)
Q Consensus 242 -----~~~~~G~~~~~NlP~GEVfta-P~~~~vnG~i~~d-~p~~-------~~G~~~~----~~~l~f~~G~vv~-~~a 302 (418)
..+.+= .| .+=.+.||++ =+-+=|-|+=|+= |||. |-|...- =++=.+|+=+|+. |+|
T Consensus 273 Yll~a~~T~k~-VF--D~~d~D~fWCTADvGWiTGHSYiVYGPL~~GAT~~mfEG~P~YP~~~R~W~~iekh~vtiFYTA 349 (643)
T TIGR02188 273 YLLYAAMTMKY-VF--DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWEIIEKHKVTIFYTA 349 (643)
T ss_pred HHHHHHCCEEE-EE--ECCCCCEEEEECCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEECC
T ss_conf 99887321467-64--0379962686211200205324012422115317874377833278767855331576503315
Q ss_pred CCHHHHHHHHH----H-CCCCCCE-EEEEEEECCCCCHHHHCCCCCCEEEECCCCC-CEECCCCC
Q ss_conf 43799999886----4-2898526-8799986686200110120033232057526-41226775
Q gi|255764478|r 303 SKGEEMLNKIL----D-IDEGARR-LGEVALVPHSSLLSKMNTLFYDTLFDENAAS-HIAFGQCY 360 (418)
Q Consensus 303 ~~~~~~l~~~l----~-~d~~a~~-igE~~ig~n~~~i~~~~~l~~n~L~DEk~~~-H~A~G~~y 360 (418)
.--=+.|.++= + .|--+.| ||=||=--||.|= .- |-++++. .+.+.+=|
T Consensus 350 PTAIR~L~r~G~~~~~k~DlSSLR~LGSVGEPINPEAW-----~W----Y~~~vG~~~CpiVDTW 405 (643)
T TIGR02188 350 PTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAW-----MW----YYKVVGKERCPIVDTW 405 (643)
T ss_pred HHHHHHHHHHCCHHHHHCCCCCEEECCCCCCCCCHHHH-----HH----HHHCCCCCEEEEECCC
T ss_conf 68999998611121344176400150256888764478-----89----9870489520076165
No 185
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IPR010031 This entry identifies a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesising ascorbic acid or a derivative. These include L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by IPR006093 from INTERPRO.; GO: 0016899 oxidoreductase activity acting on the CH-OH group of donors oxygen as acceptor, 0009058 biosynthetic process.
Probab=24.87 E-value=44 Score=13.40 Aligned_cols=60 Identities=17% Similarity=0.377 Sum_probs=36.9
Q ss_pred CCCEEEEEEEE--EEEECCCCE---ECCEEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 47341899970--033035402---2686999978899999854379999988642898526879998668
Q gi|255764478|r 265 ARRVEGYATST--KPLVYQGML---IENIRVRFDQGRVVEASASKGEEMLNKILDIDEGARRLGEVALVPH 330 (418)
Q Consensus 265 ~~~vnG~i~~d--~p~~~~G~~---~~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~d~~a~~igE~~ig~n 330 (418)
+.||-|+|..- ++..++|.| +..++|---||.|+.++.+...|.++.-. -.||-+||-..
T Consensus 113 e~sVaGiistgtHgss~~Hg~l~~q~v~lti~~adGe~~~cs~e~~~dvF~AA~------vslG~lGiIv~ 177 (505)
T TIGR01678 113 EVSVAGIISTGTHGSSLKHGVLASQVVALTIMLADGEVLECSEERDKDVFKAAR------VSLGALGIIVD 177 (505)
T ss_pred CCEECCEEECCCCCCCCCCCHHHHEEEEEEEEECCCCEEEECCCCCHHHHHHHH------HCCCCEEEEEE
T ss_conf 431211550374687653332440333345670477578602204856888986------41562478999
No 186
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.81 E-value=44 Score=13.39 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=34.2
Q ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 31347997699981653589999999999982898868987274
Q gi|255764478|r 27 GVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 27 ~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
+-.+=+|-++||+.-....-+.+++.+...+.||+ |.+.++++
T Consensus 4 ~~g~L~GK~alITGaag~~GIG~aiA~~la~~GA~-V~i~~~~~ 46 (272)
T PRK08159 4 ASGLMQGKRGLILGVANNRSIAWGIAKACRAAGAE-LAFTYQGD 46 (272)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCH
T ss_conf 87235899999988999868999999999986999-99974866
No 187
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=24.74 E-value=45 Score=13.38 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=10.4
Q ss_pred HHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 99999886428985268799986
Q gi|255764478|r 306 EEMLNKILDIDEGARRLGEVALV 328 (418)
Q Consensus 306 ~~~l~~~l~~d~~a~~igE~~ig 328 (418)
.....++++. -|+.-+|=+.+.
T Consensus 129 ~~a~~~Lv~~-~ga~v~~~~~li 150 (174)
T PRK02304 129 LEAAIKLLER-LGAEVVGAAFVI 150 (174)
T ss_pred HHHHHHHHHH-CCCEEEEEEEEE
T ss_conf 9999999998-799899999999
No 188
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=24.71 E-value=45 Score=13.38 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHCCCCC-------CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 9999999999873134799-------7699981653589999999999982898868987274
Q gi|255764478|r 15 LLEKLAKVALQVGVNIQEG-------QHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS 70 (418)
Q Consensus 15 ~L~kyA~llV~~~lniqkG-------e~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~ 70 (418)
..+-+.+.++..+-++|=| -.=||+.+-.-.+|.....+.|.+.||+.+++.+-..
T Consensus 28 TVeDL~ealvt~vP~~kfgiAf~EAsg~rLvR~~GND~eL~klA~ena~~I~AGHvFVI~lrn 90 (162)
T COG1839 28 TVEDLYEALVTAVPGLKFGIAFNEASGPRLVRYTGNDEELVKLAIENALKIGAGHVFVILLRN 90 (162)
T ss_pred EHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 198899999713888548888611468716884288399999999999876378389999528
No 189
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=24.67 E-value=45 Score=13.38 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 9999999999987313479976999816535899999999999828988689
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSV 65 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v 65 (418)
.+.+++|.-|. .++|++|+.|.|.++-..+-++ +. -++.++||-.|.+
T Consensus 76 ~~v~~lA~~L~--alGv~~GDrVail~~N~~e~~~-~~-lA~~~~Gav~vPv 123 (612)
T PRK08180 76 ERVRAIAQALL--DRGLSAERPLMILSGNSIEHAL-LA-LAAMYAGVPYAPV 123 (612)
T ss_pred HHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHHH-HH-HHHHHHCEEEEEC
T ss_conf 99999999999--7696997999998998599999-99-9999739099860
No 190
>KOG0056 consensus
Probab=24.31 E-value=45 Score=13.33 Aligned_cols=72 Identities=19% Similarity=0.484 Sum_probs=46.1
Q ss_pred EEECCCEEEEEEEEE-EEECC-CCE-ECCEEEEEECCEEEEEECCCHH------HHHHHHHHCCCCCCEEE---------
Q ss_conf 131473418999700-33035-402-2686999978899999854379------99998864289852687---------
Q gi|255764478|r 262 APHARRVEGYATSTK-PLVYQ-GML-IENIRVRFDQGRVVEASASKGE------EMLNKILDIDEGARRLG--------- 323 (418)
Q Consensus 262 aP~~~~vnG~i~~d~-p~~~~-G~~-~~~~~l~f~~G~vv~~~a~~~~------~~l~~~l~~d~~a~~ig--------- 323 (418)
||......|.|.|+- ...|. |+. ..++.+++..|+++..-|+.|. ++|-++++...|+-.+-
T Consensus 528 a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056 528 APPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CCCCCCCCCEEEEEEEEEECCCCCCEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf 99733057708998767864899861232148856996899977898866689999999940557608986701788879
Q ss_pred -----EEEEECCCCC
Q ss_conf -----9998668620
Q gi|255764478|r 324 -----EVALVPHSSL 333 (418)
Q Consensus 324 -----E~~ig~n~~~ 333 (418)
.+|++|.++.
T Consensus 608 ~SLRs~IGVVPQDtv 622 (790)
T KOG0056 608 SSLRSSIGVVPQDTV 622 (790)
T ss_pred HHHHHHCCCCCCCCE
T ss_conf 989975683567513
No 191
>TIGR01439 lp_hng_hel_AbrB transcriptional regulator, AbrB family; InterPro: IPR006339 This DNA-binding domain is found in proteins like AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. .
Probab=24.25 E-value=46 Score=13.32 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=13.8
Q ss_pred HHHHHCCCCCCEEEEEC
Q ss_conf 98731347997699981
Q gi|255764478|r 24 LQVGVNIQEGQHLIVMA 40 (418)
Q Consensus 24 V~~~lniqkGe~VlI~~ 40 (418)
|+.-|||++|+.|.|..
T Consensus 16 iR~~lgl~eGd~l~~~~ 32 (44)
T TIGR01439 16 IREKLGLKEGDKLEVIR 32 (44)
T ss_pred HHHHCCCCCCCEEEEEE
T ss_conf 96406999998788988
No 192
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=24.13 E-value=46 Score=13.31 Aligned_cols=60 Identities=7% Similarity=0.060 Sum_probs=29.6
Q ss_pred EEEEECCCCE--EEEEECCCCEECCCCCCCCC---CC-CCCC-----CCCCCCEEEEEE-CCCEEEEEEEEE
Q ss_conf 9999769964--99995588262278860258---97-1468-----678631695131-473418999700
Q gi|255764478|r 217 EIRFSGPNTS--LKVGLAEGHRWSGGSSIAQN---GI-MCNP-----NIPTEEVFTAPH-ARRVEGYATSTK 276 (418)
Q Consensus 217 ~i~~~~~gTD--Lt~~l~~~~~w~~~~~~~~~---G~-~~~~-----NlP~GEVftaP~-~~~vnG~i~~d~ 276 (418)
++.+=+|+=. +-|..+-.-.|.....+... .. ++.+ =-+.|+-|.-.. -+++.|.+..|.
T Consensus 142 eI~IGtp~Q~F~VIFDTGSSnLWVPS~~C~s~aC~~h~rYdsskSSTy~~~G~~f~I~YGSGsv~G~ls~Dt 213 (450)
T PTZ00013 142 EGEIGDNHQKFMFIFDTGSANLWVPSKKCDSIGCSIKHLYDASASKSYEKDGTKVDISYGSGTVKGFFSKDL 213 (450)
T ss_pred EEEECCCCCEEEEEECCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCEEECCEEEEEEECCCEEEEEEEEEE
T ss_conf 988679997479998578756020889999836677687886458770769979999988847999998559
No 193
>PTZ00059 dynein light chain; Provisional
Probab=23.87 E-value=46 Score=13.27 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=12.5
Q ss_pred EEECCCCC--CEECCCCCCCC
Q ss_conf 32057526--41226775000
Q gi|255764478|r 345 LFDENAAS--HIAFGQCYSKC 363 (418)
Q Consensus 345 L~DEk~~~--H~A~G~~y~~~ 363 (418)
=||+|-++ |.-+|.+|..+
T Consensus 46 ~fD~kyg~~WhcVVGk~FGs~ 66 (90)
T PTZ00059 46 EFDKKYNPTWHCIVGRNFGSY 66 (90)
T ss_pred HHHCCCCCEEEEEECCCCEEE
T ss_conf 975744992499996770468
No 194
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=23.45 E-value=47 Score=13.22 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH--HHHCCCCCCEEEECCHHHHH
Q ss_conf 99999999999873134799769998165358999999999--99828988689872748989
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKH--AYMLGAGLVSVFYKDSEATL 74 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~a--a~~~GA~~V~v~~~d~~~~r 74 (418)
.-|++.+..++.++-++...--= -.|.+...=-..+++- .|+.|-....|.|+.++..-
T Consensus 8 ~dld~~~~~~~~~~~el~~dHPg--f~D~~Yr~RR~~ia~~A~~yk~G~piP~veYT~~E~~t 68 (287)
T cd03346 8 SDLDKCANRVLMYGSELDADHPG--FKDNVYRKRRKYFADVAMNYKHGDPIPRVEYTEEEIKT 68 (287)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 99998850664057646789989--98879999999999999757789978787769899999
No 195
>PTZ00147 histoaspartic protease (plasmepsin I or II); Provisional
Probab=23.41 E-value=47 Score=13.22 Aligned_cols=61 Identities=8% Similarity=0.158 Sum_probs=30.8
Q ss_pred EEEEEECCCCE--EEEEECCCCEECCCCCCCCCC---C-CCCC-----CCCCCCEEEEEE-CCCEEEEEEEEE
Q ss_conf 79999769964--999955882622788602589---7-1468-----678631695131-473418999700
Q gi|255764478|r 216 AEIRFSGPNTS--LKVGLAEGHRWSGGSSIAQNG---I-MCNP-----NIPTEEVFTAPH-ARRVEGYATSTK 276 (418)
Q Consensus 216 ~~i~~~~~gTD--Lt~~l~~~~~w~~~~~~~~~G---~-~~~~-----NlP~GEVftaP~-~~~vnG~i~~d~ 276 (418)
=++.+=+|+=. +-|..+-.-.|.....++..+ . ++.+ =-|.|.-|.-.. -+++.|.+..|.
T Consensus 142 GeI~IGtp~Q~F~VIFDTGSSnLWVPS~~C~s~aC~~h~rYdsskSSTy~~~G~~f~I~YGSGsvsG~ls~Dt 214 (453)
T PTZ00147 142 GEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGTVSGFFSKDL 214 (453)
T ss_pred EEEEECCCCCEEEEEECCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCEEECCEEEEEEECCCEEEEEEEEEE
T ss_conf 9987679997479998578757040889989847677687985458780769989999977628999999789
No 196
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.36 E-value=47 Score=13.21 Aligned_cols=12 Identities=8% Similarity=0.288 Sum_probs=5.8
Q ss_pred HHHCCCEEEEEE
Q ss_conf 984797899981
Q gi|255764478|r 99 AYSDNTALLSIS 110 (418)
Q Consensus 99 ~~~~~~a~i~i~ 110 (418)
.++.+|+.+.+.
T Consensus 44 ~~~~~D~vi~iS 55 (87)
T cd04795 44 LLRKGDVVIALS 55 (87)
T ss_pred CCCCCCEEEEEE
T ss_conf 378999899997
No 197
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.28 E-value=47 Score=13.20 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=31.1
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 3479976999816535899999999999828988689872
Q gi|255764478|r 29 NIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK 68 (418)
Q Consensus 29 niqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~ 68 (418)
++=+|.++||+......-+.+++.+.+.+.||+.++....
T Consensus 3 g~L~GK~~lVTG~~~~~GIG~a~A~~la~~GA~Vvi~~~~ 42 (256)
T PRK07889 3 GLLEGKRILVTGVITDSSIAFHIARVAQEQGAEVVLTGFR 42 (256)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7149997999899885689999999999879999998389
No 198
>KOG0058 consensus
Probab=22.88 E-value=48 Score=13.15 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=42.4
Q ss_pred CCCCCCEEEEEECCCEEEEEEEE-----EEEECCCCEECCEEEEEECCEEEEEECCCH--HHHHHHHHH--CCCCCCE
Q ss_conf 67863169513147341899970-----033035402268699997889999985437--999998864--2898526
Q gi|255764478|r 253 NIPTEEVFTAPHARRVEGYATST-----KPLVYQGMLIENIRVRFDQGRVVEASASKG--EEMLNKILD--IDEGARR 321 (418)
Q Consensus 253 NlP~GEVftaP~~~~vnG~i~~d-----~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~--~~~l~~~l~--~d~~a~~ 321 (418)
.||-- --..|+ .+.|.|.|. +|.-+.-.+.+++.|+++-|++|-.-|..| .-.+.++|. .||.+-+
T Consensus 450 ~i~~~-G~~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058 450 RIPLT-GTLAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred CCCCC-CCCCCC--CCCCEEEEEEEEEECCCCCCCHHHCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 78998-861665--4443289987454069998751322834640799779998899988899999999736888873
No 199
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=22.88 E-value=48 Score=13.15 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHH
Q ss_conf 699999999999999873134799769998165--358999999999998289886898727489899760598789862
Q gi|255764478|r 10 HVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDR 87 (418)
Q Consensus 10 ~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~ 87 (418)
..+...+.++| .|-=|..+++|++..+. ...-|+.|+..++.+.|-+..++. ..+-+++++-..... .+
T Consensus 29 ~~~~~~i~~L~-----~~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~-~~~L~~~l~~~~~~~-~~-- 99 (178)
T pfam01695 29 GLDRRLIAELA-----GLDWIEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTR-TPDLVEQLKRARGDG-RL-- 99 (178)
T ss_pred CCCHHHHHHHH-----CCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-CHHHHHHHHHHHHCC-CH--
T ss_conf 98999999885-----5974215876899899998789999999999998698599996-167999999875267-49--
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EECCCHHHHHHHCC
Q ss_conf 43367999999984797899981597324307998899988898899989999998458873599-96599899987368
Q gi|255764478|r 88 VADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSI-VPFPSCAWAEIVYP 166 (418)
Q Consensus 88 ~p~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i-~~~Pt~awA~~vfp 166 (418)
+.....+...+..|. . .+--.+... ......+..+..|-. +.+..| ..+|-..|-+. |+
T Consensus 100 ------~~~l~~~~~~dlLIi-D-----DlG~~~~s~-----~~~~~lf~li~~Rye--~~stIiTSN~~~~~W~~~-~~ 159 (178)
T pfam01695 100 ------ARTLQRLAKADLLIL-D-----DIGYLPLSQ-----EAAHLLFELISDRYE--RRSTILTSNLPFGEWHEV-FG 159 (178)
T ss_pred ------HHHHHHHHCCCEEEE-E-----HHCCCCCCH-----HHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHH-CC
T ss_conf ------999999625897887-2-----001656898-----999999999999975--688687768997899876-48
Q ss_pred C
Q ss_conf 9
Q gi|255764478|r 167 D 167 (418)
Q Consensus 167 ~ 167 (418)
|
T Consensus 160 d 160 (178)
T pfam01695 160 D 160 (178)
T ss_pred C
T ss_conf 7
No 200
>KOG0890 consensus
Probab=22.83 E-value=48 Score=13.15 Aligned_cols=164 Identities=15% Similarity=0.243 Sum_probs=67.3
Q ss_pred EEEECCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC--CCEE
Q ss_conf 9996599899987368-999778999999999999742665979999999999999999730168479999769--9649
Q gi|255764478|r 151 SIVPFPSCAWAEIVYP-DDPVPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGP--NTSL 227 (418)
Q Consensus 151 ~i~~~Pt~awA~~vfp-~~~~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~--gTDL 227 (418)
++.+||.+++=+...- .=.--+..++..+ |+.-.+....|+...-..-.+..+++.+.-|+.- .-..+.. .||+
T Consensus 1920 l~~~YPqq~lW~~~a~~kS~~p~R~~R~ke-IL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v--~~ss~~~sl~t~F 1996 (2382)
T KOG0890 1920 LVLAYPQQTLWQSAALSKSNVPSRVERCKE-ILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKV--NSSSKVLSLKTDF 1996 (2382)
T ss_pred HHHHCCHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHH
T ss_conf 999684678999999983554889999999-9999875376689999889999999999964887--7320236488898
Q ss_pred EEEECCCCEECCCCCCCCCCCCCCCCCCCCCEE---EEEECCCEEE---EEE-EEEEEECCCCEECC--EEEEEECCEEE
Q ss_conf 999558826227886025897146867863169---5131473418---999-70033035402268--69999788999
Q gi|255764478|r 228 KVGLAEGHRWSGGSSIAQNGIMCNPNIPTEEVF---TAPHARRVEG---YAT-STKPLVYQGMLIEN--IRVRFDQGRVV 298 (418)
Q Consensus 228 t~~l~~~~~w~~~~~~~~~G~~~~~NlP~GEVf---taP~~~~vnG---~i~-~d~p~~~~G~~~~~--~~l~f~~G~vv 298 (418)
. .+.+.+...+.-. .-.+ .+.|-+|+---- -+|.+ ...| +|. |+-.+--...+-.| +.|+=.||++.
T Consensus 1997 ~-kl~~~~~~s~ili-P~~~-~M~ptlP~~~~~~~~h~~~~-~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y 2072 (2382)
T KOG0890 1997 R-KLVMNRRFSDILI-PLQS-IMDPTLPLIDNNHATHSPFP-PFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKIY 2072 (2382)
T ss_pred H-HHCCCCCHHHHHH-HHHH-HCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHCCHHHHHHHHHCCCCEEEEEECCCCCEE
T ss_conf 9-8603357155630-1765-11642346667644568899-88775204525327999998415881799975788776
Q ss_pred EEECCCHHH------------HHHHHHHCCCCCCE
Q ss_conf 998543799------------99988642898526
Q gi|255764478|r 299 EASASKGEE------------MLNKILDIDEGARR 321 (418)
Q Consensus 299 ~~~a~~~~~------------~l~~~l~~d~~a~~ 321 (418)
.+=|..-.| +.+++|..|+-+|+
T Consensus 2073 ~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRr 2107 (2382)
T KOG0890 2073 PFLCKPKDDLRKDARLMEFNELINKLLRKDQESRR 2107 (2382)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 78757556554566899999999999853778764
No 201
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=22.81 E-value=33 Score=14.31 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=5.5
Q ss_pred CCCCCEEEEEECCCEEE
Q ss_conf 78631695131473418
Q gi|255764478|r 254 IPTEEVFTAPHARRVEG 270 (418)
Q Consensus 254 lP~GEVftaP~~~~vnG 270 (418)
||.+=||=.=..++...
T Consensus 308 LPeELiF~vnYLGg~~~ 324 (493)
T TIGR01788 308 LPEELIFHVNYLGGDEP 324 (493)
T ss_pred CHHHCEEECCCCCCCCC
T ss_conf 70131110110266565
No 202
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.77 E-value=44 Score=13.42 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=25.8
Q ss_pred CCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEE--------EEECCEEEEEEC
Q ss_conf 6867863169513147341899970033035402268699--------997889999985
Q gi|255764478|r 251 NPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRV--------RFDQGRVVEASA 302 (418)
Q Consensus 251 ~~NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l--------~f~~G~vv~~~a 302 (418)
+.|||..|+|+.| +++-|-+....+....|.+-.+++. ++..|.|--++.
T Consensus 179 f~~iP~~e~yIf~--g~~P~~~~~~~~~~~~g~~p~~~~~~l~~q~P~~~~GG~v~ivDs 236 (367)
T TIGR03404 179 FDNLPLKELYIFP--GTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQVPGGTVRIADS 236 (367)
T ss_pred HHCCCCCCCEECC--CCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCEECCCCEEEEECC
T ss_conf 8338976631615--889995010236788888776636762458977658963998317
No 203
>KOG2795 consensus
Probab=22.33 E-value=40 Score=13.69 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=21.8
Q ss_pred ECCCEEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECC
Q ss_conf 1473418999700330354022686999978899999854
Q gi|255764478|r 264 HARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASAS 303 (418)
Q Consensus 264 ~~~~vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~ 303 (418)
....+.=++++.+-.+++-...+.+..+|. +.+=++|.
T Consensus 189 i~tdA~~IlIVEKeavFqrL~~d~~~~~~~--~~ilITgK 226 (372)
T KOG2795 189 ITTDAKFILIVEKEAVFQRLAEDNFFNTFN--RCILITGK 226 (372)
T ss_pred HHCCCEEEEEEEHHHHHHHHHHHHHHHHCC--CEEEEECC
T ss_conf 432131899995078999999999874157--72899638
No 204
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=22.31 E-value=49 Score=13.07 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=8.6
Q ss_pred EEEEEECCC--HHHHHHHHHH
Q ss_conf 999998543--7999998864
Q gi|255764478|r 296 RVVEASASK--GEEMLNKILD 314 (418)
Q Consensus 296 ~vv~~~a~~--~~~~l~~~l~ 314 (418)
+||+++--+ |.+.+..+++
T Consensus 231 ~IvSIeM~EhVG~~~~~~yF~ 251 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFE 251 (383)
T ss_pred EEEEEEHHHHCCHHHHHHHHH
T ss_conf 599971486528777999999
No 205
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=22.23 E-value=50 Score=13.06 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=5.1
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999998289
Q gi|255764478|r 49 RLITKHAYMLGA 60 (418)
Q Consensus 49 ral~~aa~~~GA 60 (418)
..|.+...+.|.
T Consensus 108 ~eLr~~L~~~G~ 119 (489)
T PRK07847 108 AELAARARDLGL 119 (489)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999996687
No 206
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=22.05 E-value=50 Score=13.04 Aligned_cols=90 Identities=10% Similarity=0.081 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHH
Q ss_conf 699999999999999873134799769998165--358999999999998289886898727489899760598789862
Q gi|255764478|r 10 HVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDR 87 (418)
Q Consensus 10 ~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~ 87 (418)
.|+.....+++.-+.++.-+-.++.+|+|-.|. .+..|.+++.......|.+.+.... .|--.+
T Consensus 14 ~lt~~~~~~~g~a~~~~l~~~~~~~~VvVg~D~R~~s~~~~~~~a~gl~s~G~~V~~~g~------------~pTP~~-- 79 (445)
T cd05803 14 GLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVIDLGI------------APTPTV-- 79 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCC------------CCHHHH--
T ss_conf 979999999999999999974899849999699866899999999999977984998898------------873899--
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECC-CCHHHCCC
Q ss_conf 4336799999998479789998159-73243079
Q gi|255764478|r 88 VADWFCEGLAKAYSDNTALLSISGD-NPLLLVNE 120 (418)
Q Consensus 88 ~p~~~~~~~~~~~~~~~a~i~i~~~-np~~l~~v 120 (418)
. +.-.....++-|.|+++ ||....++
T Consensus 80 ------~-~~v~~~~~~~GI~ITASHNP~~~NGi 106 (445)
T cd05803 80 ------Q-VLVRQSQASGGIIITASHNPPQWNGL 106 (445)
T ss_pred ------H-HHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf ------9-99985599858999957888422442
No 207
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=21.61 E-value=51 Score=12.98 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=18.9
Q ss_pred EEEEECCEEEE-EECCCHHHHHHHHHH
Q ss_conf 99997889999-985437999998864
Q gi|255764478|r 289 RVRFDQGRVVE-ASASKGEEMLNKILD 314 (418)
Q Consensus 289 ~l~f~~G~vv~-~~a~~~~~~l~~~l~ 314 (418)
-+-|++|+.++ +.|...++.|+++|+
T Consensus 70 ~~~f~~G~~v~~~~G~~~~~~l~~~le 96 (96)
T cd02956 70 VYLFAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHC
T ss_conf 888999999457718999999999769
No 208
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=21.59 E-value=51 Score=12.97 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=14.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 769998165358999999999998289886898727
Q gi|255764478|r 34 QHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD 69 (418)
Q Consensus 34 e~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d 69 (418)
-.|-|+.|++. ..+-.|+..||+-.+..+.|
T Consensus 67 RrvEITgP~d~-----km~inALNSgA~~~maDfED 97 (511)
T cd00727 67 RRVEITGPVDR-----KMVINALNSGAKVFMADFED 97 (511)
T ss_pred CCEEECCCCCH-----HHHHHHHCCCCCEEEECCCC
T ss_conf 71030189858-----89999865798689843666
No 209
>pfam10055 DUF2292 Uncharacterized small protein (DUF2292). Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.50 E-value=51 Score=12.96 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=13.9
Q ss_pred ECCEEEEEECCEEEEEECC
Q ss_conf 2686999978899999854
Q gi|255764478|r 285 IENIRVRFDQGRVVEASAS 303 (418)
Q Consensus 285 ~~~~~l~f~~G~vv~~~a~ 303 (418)
.--+++++-||+||+++..
T Consensus 15 yGsvti~Vhdg~VvQIe~~ 33 (38)
T pfam10055 15 YGSVTITIQDGKVVQIEKT 33 (38)
T ss_pred CCEEEEEEECCEEEEEEEH
T ss_conf 0349999988989999812
No 210
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.37 E-value=52 Score=12.94 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=32.5
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf 34799769998165358999999999998289886898727489
Q gi|255764478|r 29 NIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEA 72 (418)
Q Consensus 29 niqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~ 72 (418)
++=+|.+++|+.-....-+.+++++...+.||+ |.+...++..
T Consensus 3 g~L~gK~~lVTGaag~~GIG~a~A~~la~~Ga~-Vv~~~~~~~~ 45 (252)
T PRK06079 3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQNDRM 45 (252)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEECCHHH
T ss_conf 613998899989999877999999999986999-9998488799
No 211
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=21.02 E-value=52 Score=12.90 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCCHHHH-HHHHHHHHHHCCCCCCEE
Q ss_conf 79976999816535899-999999999828988689
Q gi|255764478|r 31 QEGQHLIVMAPVSALPL-ARLITKHAYMLGAGLVSV 65 (418)
Q Consensus 31 qkGe~VlI~~d~~a~~l-~ral~~aa~~~GA~~V~v 65 (418)
.+--.++|-+|....++ .||+-+++.++||+.|++
T Consensus 99 ~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~l 134 (342)
T COG1077 99 FPKPRIVICVPSGITDVERRAIKEAAESAGAREVYL 134 (342)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 788838997458865999999999998564755897
No 212
>pfam08643 DUF1776 Fungal family of unknown function (DUF1776). This is a fungal family of unknown function. One of the proteins in this family has been localized to the mitochondria.
Probab=20.82 E-value=53 Score=12.87 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=29.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf 99769998165358999999999998289886898727489
Q gi|255764478|r 32 EGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEA 72 (418)
Q Consensus 32 kGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~ 72 (418)
+.|.||| +....+|++|+++-..+++|= -|++...+++-
T Consensus 2 r~~vVli-~Gs~~~pi~R~iA~dL~rrGf-~Vfa~~r~~~~ 40 (296)
T pfam08643 2 RREVVLV-AGSPTEPLTRSIALDLERRGF-IVFVTVTSAEE 40 (296)
T ss_pred CCEEEEE-ECCCCCCHHHHHHHHHHHCCC-EEEEEECCHHH
T ss_conf 6129999-669997458999999996897-89999577788
No 213
>PRK11637 hypothetical protein; Provisional
Probab=20.77 E-value=53 Score=12.86 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 89999999999982898
Q gi|255764478|r 45 LPLARLITKHAYMLGAG 61 (418)
Q Consensus 45 ~~l~ral~~aa~~~GA~ 61 (418)
........+++|+.|-.
T Consensus 99 ~~~l~~~i~~~y~~g~~ 115 (404)
T PRK11637 99 ERSLAAQLDAAFRQGEH 115 (404)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999984784
No 214
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.69 E-value=53 Score=12.85 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf 3479976999816535899999999999828988689872748
Q gi|255764478|r 29 NIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE 71 (418)
Q Consensus 29 niqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~ 71 (418)
++=+|.++||+.-....-+.+++.+...+.||+ |.+.+.++.
T Consensus 3 g~L~GK~alITGaa~~~GIG~aiA~~La~~GA~-V~i~~~~e~ 44 (271)
T PRK06505 3 GLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGDA 44 (271)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEECCHH
T ss_conf 757999799979999854999999999986999-999818668
No 215
>KOG4529 consensus
Probab=20.66 E-value=53 Score=12.84 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=29.3
Q ss_pred HHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 847978999815973243079988999888988999899999984588735999659
Q gi|255764478|r 100 YSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFP 156 (418)
Q Consensus 100 ~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~P 156 (418)
++.+-+|+-+.+.|++.+...--...+.-.+..-.....+.......+.+-.|..|.
T Consensus 106 ~n~g~vWikvi~Rnak~v~~~~r~~gs~GdrsvIeQied~l~aS~~f~rp~IifyF~ 162 (404)
T KOG4529 106 ANLGKVWIKVIDRNAKYVSWNGRGHGSKGDRSVIEQIEDALNASTTFKRPSIIFYFA 162 (404)
T ss_pred ECCCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 559826999835881343023136665350889999999998752258971899971
No 216
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=20.61 E-value=53 Score=12.84 Aligned_cols=302 Identities=15% Similarity=0.115 Sum_probs=135.7
Q ss_pred HCCCCHHHHHHHHHHHH-----HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH-CCC
Q ss_conf 40699999999999999-----873134799769998165358999999999998289886898727489899760-598
Q gi|255764478|r 8 VAHVDEFLLEKLAKVAL-----QVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYK-YGA 81 (418)
Q Consensus 8 ~~~m~~~~L~kyA~llV-----~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~-~a~ 81 (418)
-.+|++.-|+.-.+-+- ++|.+++..-..+..+..+.+.|+.++-..+...+. |++..-.|+.+-+.-++ .++
T Consensus 99 ~D~m~e~ei~~r~~~i~~~~~~rvG~~l~~d~vAvr~~s~d~~~fa~~vk~va~~~~~-pliL~s~dp~vl~aaL~~~~~ 177 (454)
T PRK04165 99 SDTMSEEEIDERLKEINNFQFERVGEILKLDAVALRNVSGDPEKFAKAVKKVAETTEL-PLILCSFDPAVLKAALEVVAD 177 (454)
T ss_pred CCCCCHHHHHHHHHHHHHCEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHCC
T ss_conf 3777789999999986512567723411520899991789989999999999721699-779983899999999997453
Q ss_pred HHHHHHCC-HHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHH-------------HHHHHHHHHHHHHHHHHHC--
Q ss_conf 78986243-3679999999847978999815973243079988999-------------8889889998999999845--
Q gi|255764478|r 82 DYAFDRVA-DWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVS-------------RVNQAYLKAYKPALERISN-- 145 (418)
Q Consensus 82 ~e~l~~~p-~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~-------------~~~~a~~~~~k~~~~~~~~-- 145 (418)
...|-+-+ +--.+.|.++++...+-+.+.+++...|...-..-.+ ....+.....+..+..+..
T Consensus 178 ~kPLlyaAt~~N~~~m~~LA~~~~~Pl~V~a~~L~~L~~l~~~~~~~GikdlVLDpg~~~~k~tl~~~~~IRRaAik~~~ 257 (454)
T PRK04165 178 RRPLLYAATKDNWKEMAELAKEYNCPLVVSAPNLEELKSLVKKLQAAGIKDIVLDPGTENLKETLDNFTQIRRAAIKKGD 257 (454)
T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 79755227898899999999874984799779989999999999976985278889974488999999999999986378
Q ss_pred CCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 887359996599899987368999778999999999999742665------97999999999999999973016847999
Q gi|255764478|r 146 FDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCI------DPIAAWAEHNNFLHQKSQWLSQRDFAEIR 219 (418)
Q Consensus 146 ~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~d~~------Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~ 219 (418)
..+..=+..+|..+|- ..+....+|+..+...++.-. +.+.-|.-+-. +.-++ .|
T Consensus 258 r~~gYP~i~~p~~~~~--------~d~~~~~~~E~~~As~~i~KYa~i~Vl~~~~~~~llPl----l~lR~------nI- 318 (454)
T PRK04165 258 RPLGYPIIAFPITAWM--------APPVSASMKEAVLASILIIKYADIMVLHSIEPWALLPL----LTLRQ------NI- 318 (454)
T ss_pred CCCCCCEEECCHHHCC--------CCCCCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHH----HHHHH------HH-
T ss_conf 7778756730233205--------76200178999999999987465899716887886058----99987------60-
Q ss_pred EECCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCE---ECCEEEEEEC--
Q ss_conf 97699649999558826227886025897146867863169513147341899970033035402---2686999978--
Q gi|255764478|r 220 FSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGML---IENIRVRFDQ-- 294 (418)
Q Consensus 220 ~~~~gTDLt~~l~~~~~w~~~~~~~~~G~~~~~NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~---~~~~~l~f~~-- 294 (418)
||-|-.=+.++ . |.+-+ |=|+++ ||+--++|=-+.+.-- .|-+ .-|-+|-+.|
T Consensus 319 YTDPqkP~~Ve----------~-----giy~i-g~pde~---SPV~~TtNFaLTY~~V---~gdle~s~v~~~llv~Dt~ 376 (454)
T PRK04165 319 YTDPRKPVAVE----------P-----GIYEI-GNPDEN---SPVLVTTNFALTYFTV---EGDIESSKVPCYLLVVDTD 376 (454)
T ss_pred CCCCCCCCCCC----------C-----CCEEC-CCCCCC---CCEEEEEEEEEEEEEE---EEEECCCCCCEEEEEECCC
T ss_conf 47999981318----------7-----84427-998999---9779995336999998---4000006886699997589
Q ss_pred CEEEEEEC--CC-HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEECCCCC-CEECCC
Q ss_conf 89999985--43-799999886428985268799986686200110120033232057526-412267
Q gi|255764478|r 295 GRVVEASA--SK-GEEMLNKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAAS-HIAFGQ 358 (418)
Q Consensus 295 G~vv~~~a--~~-~~~~l~~~l~~d~~a~~igE~~ig~n~~~i~~~~~l~~n~L~DEk~~~-H~A~G~ 358 (418)
|.-|.... ++ +.+-+.+.++.-.=+..+-+=-|.. |+-. ..+.|.+ |..+| ++-+|-
T Consensus 377 G~sV~tA~A~Gkf~~~~i~~~ik~~gi~~kv~hr~lIi-PG~a---A~l~G~~---ee~~Gw~V~VGP 437 (454)
T PRK04165 377 GLSVLTAVAGGKFTAEKIAEFIKESGIEDKVNHRKLII-PGLA---ARLSGDI---EELTGWEVLVGP 437 (454)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCHHHCCCCEEEC-CCHH---HHCCCCC---CCCCCCEEEECC
T ss_conf 82798642038667899999998709034315655651-5412---2104751---005698899986
No 217
>PRK12582 acyl-CoA synthetase; Provisional
Probab=20.52 E-value=54 Score=12.82 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 9999999999987313479976999816535899999999999828988689
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSV 65 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v 65 (418)
.+.+++|.-|+ .++|++|+.|.|.++...+-++-. -++.++||-.|.+
T Consensus 86 ~~v~~lA~~L~--~lGv~~GDrVaIl~~N~~E~~~~~--lA~~~~Gav~vPv 133 (622)
T PRK12582 86 RAVDALAQALL--DLGLGPGRPVMILSGNSIEHALMT--LAAMQAGVPVAPV 133 (622)
T ss_pred HHHHHHHHHHH--HCCCCCCCEEEEECCCHHHHHHHH--HHHHHHCCEEEEC
T ss_conf 99999999999--779699899999899839999999--9999849689821
No 218
>PRK11617 endonuclease V; Provisional
Probab=20.44 E-value=54 Score=12.81 Aligned_cols=37 Identities=8% Similarity=-0.072 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEE
Q ss_conf 99999999999999973016847999976996499995
Q gi|255764478|r 194 AAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGL 231 (418)
Q Consensus 194 ~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l 231 (418)
+.|++.++.+.+....=+.-+...+++.+ |.|+.|.-
T Consensus 4 ~~l~~~Q~el~~kV~~~d~~~~~~~~~Va-GvDvSf~~ 40 (223)
T PRK11617 4 ASLRAQQIELASSVIREDRLDKDPPDLIA-GADVGFEQ 40 (223)
T ss_pred HHHHHHHHHHHHHEEECCCCCCCCCCEEE-EEEEEEEC
T ss_conf 99999999997414974789988763899-99886856
No 219
>PRK13262 ureE urease accessory protein UreE; Provisional
Probab=20.39 E-value=54 Score=12.81 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=12.1
Q ss_pred ECCCCEEEEEECCCCEECC
Q ss_conf 7699649999558826227
Q gi|255764478|r 221 SGPNTSLKVGLAEGHRWSG 239 (418)
Q Consensus 221 ~~~gTDLt~~l~~~~~w~~ 239 (418)
+..|+||-+++..+-...+
T Consensus 45 T~~G~dLgIsldrn~~LaD 63 (231)
T PRK13262 45 STQGLDLGISLDRNVVLAD 63 (231)
T ss_pred CCCCCEEEEEECCCCCCCC
T ss_conf 5688168898167660367
No 220
>PRK09089 consensus
Probab=20.38 E-value=54 Score=12.81 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999999873134799769998165358999999999998289886898
Q gi|255764478|r 14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF 66 (418)
Q Consensus 14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~ 66 (418)
.+.+++|..|.. +++++|+.|.|..+-..+-++- .-++.++||-+|.+.
T Consensus 39 ~~~~~lA~~L~~--~Gi~~gd~V~i~~~n~~e~~~~--~lA~~~~Gav~vpl~ 87 (517)
T PRK09089 39 QEVDKVAAFLQN--IGVKFGDKVALAVSNSTEFITA--YFAVSAIGAVAVPMN 87 (517)
T ss_pred HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHHH--HHHHHHHCCEEEEEC
T ss_conf 999999999997--2938869999994896999999--999998594999879
Done!