Query         gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 418
No_of_seqs    142 out of 636
Neff          7.0 
Searched_HMMs 39220
Date          Sun May 29 18:27:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764478.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam02073 Peptidase_M29 Thermo 100.0       0       0  940.8  47.8  402   13-416     3-404 (404)
  2 COG2309 AmpS Leucyl aminopepti 100.0       0       0  705.7  35.5  380   15-417     3-385 (385)
  3 pfam10575 consensus             92.4    0.18 4.5E-06   30.2   3.8   61    2-67      2-67  (159)
  4 PRK02947 hypothetical protein;  91.4    0.22 5.5E-06   29.5   3.4   54   13-68     89-142 (247)
  5 COG4821 Uncharacterized protei  89.4     1.8 4.5E-05   23.1   7.5   47   14-61     87-133 (243)
  6 TIGR01733 AA-adenyl-dom amino   87.1     2.5 6.3E-05   22.2   8.1  185   14-221     7-236 (452)
  7 PRK05620 acyl-CoA synthetase;   81.8     4.1  0.0001   20.6   7.6   52   14-68     46-97  (571)
  8 PRK11706 TDP-4-oxo-6-deoxy-D-g  75.4     5.7 0.00014   19.6   4.4   43   22-70     61-103 (375)
  9 PRK10946 entE enterobactin syn  74.8     6.5 0.00017   19.2   5.8   53   14-70     56-108 (536)
 10 PRK10754 quinone oxidoreductas  73.4       7 0.00018   19.0   7.1   61   23-86    131-191 (327)
 11 TIGR01367 pyrE_Therm orotate p  73.0     2.9 7.4E-05   21.7   2.5   40   24-63    102-142 (205)
 12 PRK00509 argininosuccinate syn  72.6     7.3 0.00019   18.9   7.6   35   34-68     29-64  (398)
 13 pfam04015 DUF362 Domain of unk  72.4     7.2 0.00018   18.9   4.4   39   27-65     29-78  (262)
 14 COG4384 Mu-like prophage prote  69.6     8.5 0.00022   18.4   9.3  112  225-349    36-162 (203)
 15 COG4555 NatA ABC-type Na+ tran  69.4     7.1 0.00018   19.0   3.8   31   23-53     18-50  (245)
 16 PTZ00165 aspartyl protease; Pr  69.0     8.5 0.00022   18.4   4.1   46  200-245   140-187 (505)
 17 COG2089 SpsE Sialic acid synth  67.4     9.3 0.00024   18.1   4.9   81   28-108     7-108 (347)
 18 TIGR02275 DHB_AMP_lig 2,3-dihy  66.6     9.7 0.00025   18.0   5.7   50   14-67     56-105 (534)
 19 TIGR02824 quinone_pig3 putativ  66.3     9.8 0.00025   18.0   6.4   53   16-71    130-201 (334)
 20 PRK06087 short chain acyl-CoA   65.3      10 0.00026   17.8   8.1   52   13-68     57-108 (548)
 21 PRK07470 acyl-CoA synthetase;   64.4      11 0.00027   17.7   7.9   52   14-69     40-91  (528)
 22 PRK09274 peptide synthase; Pro  64.1      11 0.00027   17.7   5.7   49   14-66     50-98  (555)
 23 PRK05857 acyl-CoA synthetase;   63.6      11 0.00028   17.6   6.1   54   13-70     40-93  (532)
 24 PRK11658 UDP-4-amino-4-deoxy-L  63.5      11 0.00028   17.6   4.0   39   26-69     66-104 (379)
 25 cd01821 Rhamnogalacturan_acety  63.0      11 0.00029   17.6   4.0   55    5-66     45-114 (198)
 26 PRK08316 acyl-CoA synthetase;   62.2      12  0.0003   17.5   8.0   51   14-68     44-94  (525)
 27 cd03248 ABCC_TAP TAP, the Tran  61.4      12 0.00031   17.4   5.4   62  261-324     3-75  (226)
 28 TIGR03588 PseC UDP-4-keto-6-de  61.2      12 0.00031   17.3   4.6   38   26-68     62-99  (380)
 29 PRK12406 acyl-CoA synthetase;   61.1      12 0.00031   17.3   7.6   52   14-69     20-71  (510)
 30 PRK09620 hypothetical protein;  61.1      11 0.00029   17.5   3.5   34   32-65      2-49  (229)
 31 KOG1176 consensus               60.9      12 0.00031   17.3   7.3   52   14-67     53-104 (537)
 32 PRK00174 acetyl-CoA synthetase  60.4      12 0.00032   17.3   7.5   45   14-62    115-159 (648)
 33 TIGR00538 hemN oxygen-independ  59.9      13 0.00032   17.2   4.4  126   45-248   189-319 (462)
 34 PRK04319 acetyl-CoA synthetase  59.8      13 0.00032   17.2   7.5   50   13-66     80-129 (570)
 35 PRK08558 adenine phosphoribosy  59.8      13 0.00032   17.2   3.6   25  304-329   190-214 (238)
 36 TIGR02768 TraA_Ti Ti-type conj  59.5      13 0.00033   17.2   4.6  243   23-319   491-767 (888)
 37 pfam04127 DFP DNA / pantothena  59.1     5.6 0.00014   19.7   1.7   34   32-65      1-48  (197)
 38 PRK08008 caiC putative crotono  57.9      14 0.00035   17.0   8.1   54   13-70     44-97  (517)
 39 PRK08751 putative long-chain f  57.4      14 0.00036   16.9   8.1   51   14-67     58-108 (560)
 40 PRK07059 acyl-CoA synthetase;   57.2      14 0.00036   16.9   7.6   51   13-67     55-105 (557)
 41 PRK10524 prpE propionyl-CoA sy  57.1      14 0.00036   16.9   7.5   45   14-62     92-136 (629)
 42 PRK06368 consensus              56.9      14 0.00036   16.9   7.6   53   14-70     40-92  (529)
 43 pfam09890 DUF2117 Uncharacteri  56.8      14 0.00036   16.9   4.3   39  253-306    94-133 (209)
 44 PRK07771 consensus              56.7      14 0.00036   16.8   7.1   51   14-68     46-96  (541)
 45 PRK06512 thiamine-phosphate py  56.1      15 0.00037   16.8   9.7  168   10-208    50-217 (221)
 46 pfam03192 DUF257 Pyrococcus pr  55.8      15 0.00038   16.7   4.5   42   29-70      7-50  (210)
 47 PRK08276 acyl-CoA synthetase;   55.7      15 0.00038   16.7   6.7   54   14-71     32-85  (507)
 48 COG0604 Qor NADPH:quinone redu  55.6      15 0.00038   16.7   7.7   89   20-111   130-220 (326)
 49 cd03291 ABCC_CFTR1 The CFTR su  55.4      15 0.00038   16.7   4.0   31   22-52     52-84  (282)
 50 PRK09088 acyl-CoA synthetase;   54.8      15 0.00039   16.6   6.5   54   14-71     30-83  (485)
 51 pfam01041 DegT_DnrJ_EryC1 DegT  54.6      15 0.00039   16.6   4.4   38   26-68     58-95  (363)
 52 PRK09192 acyl-CoA synthetase;   54.5      15 0.00039   16.6   5.3   50   13-66     56-105 (580)
 53 PRK08162 acyl-CoA synthetase;   54.5      15 0.00039   16.6   7.4   51   14-68     51-101 (545)
 54 TIGR03208 cyc_hxne_CoA_lg cycl  54.0      16  0.0004   16.5   7.8   52   13-68     60-111 (538)
 55 PRK13295 cyclohexanecarboxylat  53.5      16 0.00041   16.5   9.5   50   14-67     62-111 (546)
 56 cd00616 AHBA_syn 3-amino-5-hyd  52.8      16 0.00042   16.4   4.5   42   23-69     48-89  (352)
 57 PRK08315 acyl-CoA synthetase;   52.6      17 0.00042   16.4   7.7   49   14-66     53-101 (561)
 58 PTZ00237 acetyl-CoA synthetase  51.5      17 0.00044   16.3   7.5   44   14-61    100-143 (649)
 59 PRK07514 malonyl-CoA synthase;  51.2      17 0.00044   16.2   6.7   51   14-68     36-86  (504)
 60 PRK07786 acyl-CoA synthetase;   51.0      18 0.00045   16.2   8.1   51   14-68     55-105 (551)
 61 PRK12583 acyl-CoA synthetase;   50.9      18 0.00045   16.2   7.9   51   14-68     53-103 (558)
 62 PRK07768 acyl-CoA synthetase;   49.9      18 0.00046   16.1   6.2   53   14-70     37-89  (543)
 63 cd03088 ManB ManB is a bacteri  49.8      18 0.00047   16.1   8.7   55    8-62     11-67  (459)
 64 COG0318 CaiC Acyl-CoA syntheta  49.7      18 0.00047   16.1   6.8   52   14-69     46-97  (534)
 65 PRK06219 consensus              49.6      18 0.00047   16.1   7.6   50   14-67     50-99  (547)
 66 TIGR02363 dhaK1 dihydroxyaceto  49.3     3.7 9.4E-05   20.9  -0.6   98  256-358    76-225 (354)
 67 COG5485 Predicted ester cyclas  49.3      19 0.00047   16.0   3.4   40  253-306    83-123 (131)
 68 COG0426 FpaA Uncharacterized f  48.8      19 0.00048   16.0   6.8   31  296-328   279-309 (388)
 69 PRK03640 O-succinylbenzoic aci  48.4      19 0.00049   16.0   8.2   53   14-70     35-87  (481)
 70 PRK06155 crotonobetaine/carnit  48.1      19 0.00049   15.9   8.0   54   13-70     65-118 (552)
 71 PRK07770 consensus              47.8      20  0.0005   15.9   7.8   53   14-70     40-92  (508)
 72 KOG1197 consensus               47.8      20  0.0005   15.9   7.5   90   20-110   134-245 (336)
 73 PRK12560 adenine phosphoribosy  47.8      20  0.0005   15.9   3.8   24  253-276    83-107 (184)
 74 TIGR02518 EutH_ACDH acetaldehy  47.1      20 0.00051   15.8   3.0   69  203-273   229-299 (528)
 75 PHA02131 hypothetical protein   46.9      20 0.00051   15.8   3.7   48  264-314     8-57  (70)
 76 PRK11176 lipid transporter ATP  46.0      21 0.00053   15.7   3.5   57  268-324   337-403 (581)
 77 PRK07656 acyl-CoA synthetase;   45.6      21 0.00054   15.7   7.7   49   14-66     39-87  (520)
 78 PRK08974 long-chain-fatty-acid  45.6      21 0.00054   15.7   7.9   51   14-67     56-106 (559)
 79 PRK04813 D-alanine--D-alanyl c  45.4      21 0.00054   15.6   6.6   53   13-69     34-86  (503)
 80 KOG2733 consensus               45.4      21 0.00054   15.6   4.0   66    8-76     38-126 (423)
 81 TIGR03205 pimA dicarboxylate--  44.6      22 0.00055   15.6   8.1   53   14-70     54-106 (541)
 82 COG0133 TrpB Tryptophan syntha  44.4      22 0.00056   15.5   3.8   36   38-76    106-143 (396)
 83 pfam08553 VID27 VID27 cytoplas  44.1      22 0.00056   15.5   3.1  169  224-409   427-628 (788)
 84 TIGR01893 aa-his-dipept aminoa  44.1     7.5 0.00019   18.8   0.3  102  186-302   272-385 (506)
 85 PRK09029 O-succinylbenzoic aci  44.0      22 0.00057   15.5   8.2   53   13-69     35-87  (458)
 86 PRK07008 acyl-CoA synthetase;   43.4      23 0.00058   15.4   7.8   51   14-68     47-97  (539)
 87 COG4069 Uncharacterized protei  43.1      23 0.00058   15.4   4.5   32  268-306   175-206 (367)
 88 PRK13390 acyl-CoA synthetase;   43.0      23 0.00058   15.4   7.8   52   13-68     31-82  (501)
 89 PRK13391 acyl-CoA synthetase;   42.9      23 0.00059   15.4   7.4   51   14-68     32-82  (514)
 90 PRK13383 acyl-CoA synthetase;   42.7      23 0.00059   15.4   7.6   53   13-69     67-119 (516)
 91 cd03065 PDI_b_Calsequestrin_N   42.6      23 0.00059   15.4   3.6   24  290-313    92-115 (120)
 92 pfam11006 DUF2845 Protein of u  42.4      23  0.0006   15.3   2.7   15  289-303    70-84  (85)
 93 TIGR03201 dearomat_had 6-hydro  42.3      23  0.0006   15.3   4.4   31   28-61    162-192 (349)
 94 TIGR00958 3a01208 antigen pept  42.3      24  0.0006   15.3   4.3   57  261-319   522-589 (770)
 95 PRK05677 acyl-CoA synthetase;   42.2      24  0.0006   15.3   7.6   50   14-66     57-106 (562)
 96 TIGR02619 TIGR02619 putative C  42.1      24  0.0006   15.3   5.9   38   27-64     99-136 (151)
 97 PRK07788 acyl-CoA synthetase;   41.8      24 0.00061   15.3   7.8   53   13-69     85-137 (552)
 98 COG2006 Uncharacterized conser  41.5      24 0.00062   15.2   6.0   37   30-66     34-81  (293)
 99 PRK10657 isoaspartyl dipeptida  40.7      25 0.00063   15.2   2.6   29  386-416   349-377 (384)
100 TIGR01090 apt adenine phosphor  40.7      25 0.00063   15.2   3.9   20   13-32     28-47  (175)
101 TIGR01038 L22_arch ribosomal p  40.4      17 0.00042   16.4   1.6   14  146-159    72-85  (151)
102 PRK08308 acyl-CoA synthetase;   40.3      25 0.00064   15.1   8.1  104   13-121    15-121 (413)
103 pfam02144 Rad1 Repair protein   40.2      24 0.00062   15.2   2.5   19  215-233    95-113 (250)
104 KOG1201 consensus               40.0      25 0.00065   15.1   5.6   53   17-71     22-74  (300)
105 smart00829 PKS_ER Enoylreducta  39.6      26 0.00066   15.0   6.5   38   27-67     99-136 (288)
106 PRK07684 consensus              39.6      26 0.00066   15.0   6.6   53   14-70     36-88  (516)
107 PRK03584 acetoacetyl-CoA synth  39.1      26 0.00067   15.0   7.8   46   13-62    123-168 (652)
108 TIGR01344 malate_syn_A malate   39.1      19 0.00048   16.0   1.8   18   10-27    287-304 (522)
109 COG0399 WecE Predicted pyridox  39.1      26 0.00067   15.0   4.7   39   27-70     68-106 (374)
110 PRK12492 acyl-CoA synthetase;   38.8      27 0.00068   15.0   7.6   51   14-67     57-107 (562)
111 PRK06188 acyl-CoA synthetase;   38.6      27 0.00068   14.9   7.8   50   14-67     43-92  (522)
112 cd05005 SIS_PHI Hexulose-6-pho  38.5      27 0.00068   14.9   5.5   50    4-60     11-60  (179)
113 PRK12476 acyl-CoA synthetase;   38.1      27 0.00069   14.9   6.2   48   13-65     75-122 (612)
114 COG0503 Apt Adenine/guanine ph  37.9      27  0.0007   14.9   3.9   27  303-330   129-155 (179)
115 PRK05850 acyl-CoA synthetase;   37.8      27  0.0007   14.9   4.9   49   13-66     45-93  (581)
116 PRK10646 putative ATPase; Prov  37.7      28  0.0007   14.8   3.7   44    9-55      7-52  (153)
117 PRK08452 flagellar protein Fla  37.5      14 0.00036   16.9   0.9   32  196-233    50-81  (126)
118 PTZ00265 multidrug resistance   37.4      28 0.00071   14.8   4.4   47  268-314  1163-1220(1467)
119 cd02769 MopB_DMSOR-BSOR-TMAOR   37.4      28 0.00071   14.8   3.1   13  202-214   297-309 (609)
120 pfam11525 CopK Copper resistan  37.2      23 0.00058   15.4   1.9   29  286-315    40-68  (73)
121 TIGR01389 recQ ATP-dependent D  36.7      20 0.00051   15.8   1.6  191   76-389   105-303 (607)
122 PRK11595 gluconate periplasmic  36.7      29 0.00073   14.7   4.2   12  150-161   114-125 (227)
123 PRK09814 hypothetical protein;  36.7      29 0.00073   14.7   9.9   83   15-108    47-130 (337)
124 COG0802 Predicted ATPase or ki  36.7      29 0.00073   14.7   4.1   42   12-56      7-50  (149)
125 PRK06178 acyl-CoA synthetase;   36.3      29 0.00074   14.7   7.9   52   13-68     65-116 (567)
126 PRK13982 bifunctional SbtC-lik  36.3      29 0.00074   14.7   4.7   37   34-71     73-109 (476)
127 TIGR00632 vsr DNA mismatch end  36.1      18 0.00045   16.2   1.3   37  226-264    75-114 (143)
128 PRK06839 acyl-CoA synthetase;   35.8      29 0.00075   14.6   6.8   53   15-70     36-88  (496)
129 KOG0572 consensus               35.7      30 0.00075   14.6   4.2   88   11-101    58-162 (474)
130 PRK08314 acyl-CoA synthetase;   35.6      30 0.00076   14.6   7.7   51   14-67     43-93  (544)
131 PRK06018 putative acyl-CoA syn  35.3      30 0.00076   14.6   7.5   51   14-68     47-97  (540)
132 TIGR02379 ECA_wecE TDP-4-keto-  35.3      30 0.00076   14.6   2.6   49   15-73     58-106 (376)
133 PRK08279 acyl-CoA synthetase;   35.2      30 0.00077   14.6   7.5   51   14-68     75-125 (602)
134 PRK13382 acyl-CoA synthetase;   34.7      31 0.00078   14.5   7.5   54   13-70     75-128 (540)
135 PRK07272 amidophosphoribosyltr  34.7      31 0.00078   14.5   4.1   14  249-262   216-229 (484)
136 PRK06187 acyl-CoA synthetase;   34.6      31 0.00078   14.5   7.4   51   14-68     39-89  (520)
137 PRK06164 acyl-CoA synthetase;   34.5      31 0.00079   14.5   8.1   51   13-67     42-92  (541)
138 PRK07769 acyl-CoA synthetase;   34.1      31  0.0008   14.5   5.9   47   14-65     61-107 (629)
139 PRK08341 amidophosphoribosyltr  33.3      32 0.00082   14.4   3.0   10  253-262   207-216 (442)
140 pfam02878 PGM_PMM_I Phosphoglu  33.1      32 0.00083   14.4   8.7   90   10-120    17-109 (138)
141 cd01308 Isoaspartyl-dipeptidas  33.0      32 0.00083   14.3   2.5   29  386-416   352-380 (387)
142 PRK07529 acyl-CoA synthetase;   33.0      33 0.00083   14.3   5.3   43   14-60     66-108 (632)
143 TIGR03127 RuMP_HxlB 6-phospho   32.5      33 0.00084   14.3   5.6   51    3-60      7-57  (179)
144 pfam00718 Polyoma_coat Polyoma  32.2      33 0.00085   14.3   3.1   44  315-358   192-235 (296)
145 PRK07798 acyl-CoA synthetase;   32.1      34 0.00086   14.2   6.5   49   14-66     36-84  (532)
146 TIGR03451 mycoS_dep_FDH mycoth  31.8      34 0.00087   14.2   6.5   10   29-38    173-182 (358)
147 TIGR00692 tdh L-threonine 3-de  31.7      34 0.00087   14.2   7.0  145   23-203   151-301 (341)
148 PRK09219 xanthine phosphoribos  31.5      34 0.00087   14.2   3.6   10  257-266    89-98  (189)
149 TIGR01394 TypA_BipA GTP-bindin  31.5      34 0.00087   14.2   3.0   68   35-108    98-177 (609)
150 pfam09572 RE_XamI XamI restric  31.5      34 0.00088   14.2   4.1   75  132-220    67-143 (251)
151 PRK04527 argininosuccinate syn  31.4      34 0.00088   14.2   8.7   43  286-329   217-261 (397)
152 TIGR02729 Obg_CgtA GTP-binding  31.4      24  0.0006   15.3   1.2   44  181-227   246-294 (296)
153 cd01133 F1-ATPase_beta F1 ATP   31.3      35 0.00088   14.2   5.8   37   24-60     60-98  (274)
154 PRK13820 argininosuccinate syn  31.2      35 0.00089   14.1  11.3  208   34-314    31-244 (395)
155 TIGR01421 gluta_reduc_1 glutat  31.2      35 0.00089   14.1   3.0  106  194-315    83-202 (475)
156 PRK06060 acyl-CoA synthetase;   31.0      35 0.00089   14.1   7.9   53   13-69     37-89  (705)
157 PRK08247 cystathionine gamma-s  30.8      35  0.0009   14.1  11.7  112  189-313   231-359 (366)
158 PRK05605 acyl-CoA synthetase;   30.5      36 0.00091   14.1   7.7   50   13-66     61-110 (571)
159 PRK05852 acyl-CoA synthetase;   30.2      36 0.00092   14.0   6.7   54   13-70     50-103 (530)
160 PRK06145 acyl-CoA synthetase;   29.9      36 0.00093   14.0   7.9   54   13-70     34-87  (497)
161 cd03268 ABC_BcrA_bacitracin_re  29.4      37 0.00095   13.9   2.5   32   24-55     17-50  (208)
162 TIGR03098 ligase_PEP_1 acyl-Co  29.0      38 0.00096   13.9   8.0   50   14-67     33-82  (515)
163 TIGR00068 glyox_I lactoylgluta  28.9      24 0.00061   15.3   0.9   45  286-331    82-129 (183)
164 PRK11337 DNA-binding transcrip  28.7      38 0.00097   13.9   5.0   20  201-222   129-148 (293)
165 TIGR01324 cysta_beta_ly_B cyst  28.5      38 0.00098   13.8   6.5  152   30-218    91-280 (389)
166 TIGR02982 heterocyst_DevA ABC   28.0      18 0.00046   16.1   0.2   24   21-44     19-42  (220)
167 pfam00501 AMP-binding AMP-bind  27.7      40   0.001   13.7   6.8   52   14-69      7-58  (412)
168 TIGR00904 mreB cell shape dete  27.6      40   0.001   13.7   5.3   55   12-66     80-135 (337)
169 pfam02367 UPF0079 Uncharacteri  27.6      40   0.001   13.7   2.8   35   18-55      3-39  (123)
170 COG1021 EntE Peptide arylation  27.6      40   0.001   13.7   5.9   49   15-67     62-110 (542)
171 COG3665 Uncharacterized conser  27.5      40   0.001   13.7   2.4   29  320-350   169-197 (264)
172 TIGR02668 moaA_archaeal probab  27.1      41   0.001   13.7   3.9   53   15-67    102-163 (324)
173 cd03345 eu_TyrOH Eukaryotic ty  26.7      41  0.0011   13.6   3.0   59   14-74      7-67  (298)
174 PRK09255 malate synthase; Vali  26.6      41  0.0011   13.6   2.4   31   34-69     88-118 (531)
175 COG4939 Major membrane immunog  26.3      42  0.0011   13.6   3.6   18  286-303    48-65  (147)
176 pfam09533 DUF2380 Predicted li  26.3      42  0.0011   13.6   2.0   33  253-285    98-130 (220)
177 PRK13646 cbiO cobalt transport  26.2      42  0.0011   13.6   2.2   31   23-53     23-55  (286)
178 PRK08690 enoyl-(acyl carrier p  26.0      42  0.0011   13.5   5.0   37   28-64      1-37  (261)
179 PRK06710 acyl-CoA synthetase;   25.9      42  0.0011   13.5   7.8   50   14-67     57-106 (563)
180 COG0034 PurF Glutamine phospho  25.8      43  0.0011   13.5   3.1   26  353-379   380-408 (470)
181 COG1212 KdsB CMP-2-keto-3-deox  25.4      43  0.0011   13.5   4.3   40   40-79     23-62  (247)
182 PRK05793 amidophosphoribosyltr  25.4      43  0.0011   13.5   3.0   17  247-263   220-236 (472)
183 PRK07349 amidophosphoribosyltr  25.0      44  0.0011   13.4   3.2   21   51-73    139-159 (495)
184 TIGR02188 Ac_CoA_lig_AcsA acet  24.9      44  0.0011   13.4   6.8  262   15-360   105-405 (643)
185 TIGR01678 FAD_lactone_ox sugar  24.9      44  0.0011   13.4   3.4   60  265-330   113-177 (505)
186 PRK08159 enoyl-(acyl carrier p  24.8      44  0.0011   13.4   4.6   43   27-70      4-46  (272)
187 PRK02304 adenine phosphoribosy  24.7      45  0.0011   13.4   3.8   22  306-328   129-150 (174)
188 COG1839 Uncharacterized conser  24.7      45  0.0011   13.4   4.0   56   15-70     28-90  (162)
189 PRK08180 feruloyl-CoA synthase  24.7      45  0.0011   13.4   5.6   48   14-65     76-123 (612)
190 KOG0056 consensus               24.3      45  0.0012   13.3   5.0   72  262-333   528-622 (790)
191 TIGR01439 lp_hng_hel_AbrB tran  24.2      46  0.0012   13.3   2.1   17   24-40     16-32  (44)
192 PTZ00013 plasmepsin 4 (PM4); P  24.1      46  0.0012   13.3   2.4   60  217-276   142-213 (450)
193 PTZ00059 dynein light chain; P  23.9      46  0.0012   13.3   2.7   19  345-363    46-66  (90)
194 cd03346 eu_TrpOH Eukaryotic tr  23.4      47  0.0012   13.2   2.7   59   14-74      8-68  (287)
195 PTZ00147 histoaspartic proteas  23.4      47  0.0012   13.2   2.4   61  216-276   142-214 (453)
196 cd04795 SIS SIS domain. SIS (S  23.4      47  0.0012   13.2   4.3   12   99-110    44-55  (87)
197 PRK07889 enoyl-(acyl carrier p  23.3      47  0.0012   13.2   5.2   40   29-68      3-42  (256)
198 KOG0058 consensus               22.9      48  0.0012   13.1   5.4   66  253-321   450-524 (716)
199 pfam01695 IstB IstB-like ATP b  22.9      48  0.0012   13.1   3.8  129   10-167    29-160 (178)
200 KOG0890 consensus               22.8      48  0.0012   13.1   1.6  164  151-321  1920-2107(2382)
201 TIGR01788 Glu-decarb-GAD gluta  22.8      33 0.00084   14.3   0.7   17  254-270   308-324 (493)
202 TIGR03404 bicupin_oxalic bicup  22.8      44  0.0011   13.4   1.4   50  251-302   179-236 (367)
203 KOG2795 consensus               22.3      40   0.001   13.7   1.1   38  264-303   189-226 (372)
204 PRK11705 cyclopropane fatty ac  22.3      49  0.0013   13.1   7.0   19  296-314   231-251 (383)
205 PRK07847 amidophosphoribosyltr  22.2      50  0.0013   13.1   3.1   12   49-60    108-119 (489)
206 cd05803 PGM_like4 This PGM-lik  22.1      50  0.0013   13.0   9.6   90   10-120    14-106 (445)
207 cd02956 ybbN ybbN protein fami  21.6      51  0.0013   13.0   4.0   26  289-314    70-96  (96)
208 cd00727 malate_synt_A Malate s  21.6      51  0.0013   13.0   2.3   31   34-69     67-97  (511)
209 pfam10055 DUF2292 Uncharacteri  21.5      51  0.0013   13.0   3.0   19  285-303    15-33  (38)
210 PRK06079 enoyl-(acyl carrier p  21.4      52  0.0013   12.9   5.2   43   29-72      3-45  (252)
211 COG1077 MreB Actin-like ATPase  21.0      52  0.0013   12.9   5.3   35   31-65     99-134 (342)
212 pfam08643 DUF1776 Fungal famil  20.8      53  0.0013   12.9   4.5   39   32-72      2-40  (296)
213 PRK11637 hypothetical protein;  20.8      53  0.0014   12.9   3.4   17   45-61     99-115 (404)
214 PRK06505 enoyl-(acyl carrier p  20.7      53  0.0014   12.8   5.2   42   29-71      3-44  (271)
215 KOG4529 consensus               20.7      53  0.0014   12.8   2.6   57  100-156   106-162 (404)
216 PRK04165 acetyl-CoA decarbonyl  20.6      53  0.0014   12.8  11.9  302    8-358    99-437 (454)
217 PRK12582 acyl-CoA synthetase;   20.5      54  0.0014   12.8   5.8   48   14-65     86-133 (622)
218 PRK11617 endonuclease V; Provi  20.4      54  0.0014   12.8   2.1   37  194-231     4-40  (223)
219 PRK13262 ureE urease accessory  20.4      54  0.0014   12.8   2.9   19  221-239    45-63  (231)
220 PRK09089 consensus              20.4      54  0.0014   12.8   7.9   49   14-66     39-87  (517)

No 1  
>pfam02073 Peptidase_M29 Thermophilic metalloprotease (M29).
Probab=100.00  E-value=0  Score=940.75  Aligned_cols=402  Identities=43%  Similarity=0.745  Sum_probs=398.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf             99999999999987313479976999816535899999999999828988689872748989976059878986243367
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWF   92 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~   92 (418)
                      +++|+|||+++|++|+||||||.|+|++++++.||+|+|+++||++||++|++.|+|+.++|.+|++++++||+++|+|+
T Consensus         3 ~~~l~kyA~llV~~glnvQ~Gq~VlI~a~~~a~~l~r~l~~~ay~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~P~~~   82 (404)
T pfam02073         3 DERLEKYAELLVKVGVNVQKGQTVLISAPVEAAPLVRALVEEAYEAGAKNVVVEWSDDEITRARLEHAPEEQFEEFPEWE   82 (404)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHH
T ss_conf             58999999999995726799998999955753999999999999759997579827779999998659987862385555


Q ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHH
Q ss_conf             99999998479789998159732430799889998889889998999999845887359996599899987368999778
Q gi|255764478|r   93 CEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPI  172 (418)
Q Consensus        93 ~~~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~  172 (418)
                      .+.+.+++++++++|+|.++||.+|+++||+|+++++++++++++.++++++.++++|||+++||++|||+|||  +++|
T Consensus        83 ~~~~~~~~e~~~a~I~I~~~np~~l~~vd~~ki~~~~kA~~~a~~~~~~~~~~~~~~W~i~~~Pt~~wA~~vfp--~a~~  160 (404)
T pfam02073        83 AEGMLELAEEGDAFISIRGENPDLLADVDPERIAAYQKARGPALKPRRSATMSNKVSWCVVAYPTPAWAQKVFP--QAGM  160 (404)
T ss_pred             HHHHHHHHHCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCC--CHHH
T ss_conf             79999999709989998459927755999899999999999998999998744874448993489899976489--5566


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEECCCCCCCCCCCCCCC
Q ss_conf             99999999999974266597999999999999999973016847999976996499995588262278860258971468
Q gi|255764478|r  173 AIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNP  252 (418)
Q Consensus       173 s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w~~~~~~~~~G~~~~~  252 (418)
                      ++++||++||++||+|++|||++|++|.+.+++++++||+++|++|||++|||||+|+++++|.|.++++++.+|..|.+
T Consensus       161 a~e~l~d~if~a~~ld~~dPv~~W~~~~~~l~~~~~~Ln~~~~~~lh~~~~GTDLtv~l~~~~~w~~~~~~~~~G~~~~~  240 (404)
T pfam02073       161 AVEALWDFIFKAVRLDEEDPVAAWEAHDEKLKKKVDILNEKRFKKLHYKAPGTDLTVSLPGRHAWNGGGSKNKDGVEFIA  240 (404)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCEEECCCCCCCCCCCCCC
T ss_conf             79999999999985478886999999999999999997447961899987984799980898379457544567875769


Q ss_pred             CCCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf             67863169513147341899970033035402268699997889999985437999998864289852687999866862
Q gi|255764478|r  253 NIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLNKILDIDEGARRLGEVALVPHSS  332 (418)
Q Consensus       253 NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~d~~a~~igE~~ig~n~~  332 (418)
                      |||+|||||||++++|||+|++|+|++|+|+++++|+|+||+|+||+++|++|+++|+++|++||||+||||||||+|++
T Consensus       241 NiPt~EVFtaP~~~~v~G~v~~~~Pl~~~G~~i~~~~l~Fe~GkvV~~~A~~g~e~L~~ll~tDeGAr~lGEvAl~~~~s  320 (404)
T pfam02073       241 NMPTEEVFTAPVKDSVEGTVTSTKPLSYQGNLIEGIRLTFEDGKVVDASAEKGEEVLKKLLDTDEGARYLGEVALVPNPS  320 (404)
T ss_pred             CCCCCCEEECCCCCCEEEEEEECCCEEECCEEEEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf             99985346132115141699979643689998755799997989999885787899999863597754753799966874


Q ss_pred             CHHHHCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCCCEEEEEE
Q ss_conf             00110120033232057526412267750003676678834432069850124587996788199999817995999886
Q gi|255764478|r  333 LLSKMNTLFYDTLFDENAASHIAFGQCYSKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMR  412 (418)
Q Consensus       333 ~i~~~~~l~~n~L~DEk~~~H~A~G~~y~~~~~~~~~~~~~~~~~~g~n~S~~H~D~~~~~~~i~vdgi~~dG~~~~i~~  412 (418)
                      |||+++++|||||||||++||||||+|||+|++||.+|+++++.++|.|+|++||||||++++|+|||+++||++++|||
T Consensus       321 pis~~~~~~~ntLfDEn~s~HlAlG~aYp~~~~~g~~~~~ee~~~~G~N~S~iH~D~m~g~~~~~i~g~~~dG~~~~i~~  400 (404)
T pfam02073       321 PISNIGIIFYNTLFDENASCHLALGRAYPECIEGGKEMSDEELKAGGGNDSAVHVDFMIGSGEIDIDGITKDGTREPIFR  400 (404)
T ss_pred             HHHHHCCHHHHHEEECCCCCCEECCCCCHHHHCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf             67663212234305558871340676663332286336888897558856504798862898369999966997888874


Q ss_pred             CCEE
Q ss_conf             7845
Q gi|255764478|r  413 GGEW  416 (418)
Q Consensus       413 ~G~~  416 (418)
                      ||+|
T Consensus       401 ~G~~  404 (404)
T pfam02073       401 NGNF  404 (404)
T ss_pred             CCCC
T ss_conf             8919


No 2  
>COG2309 AmpS Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=705.67  Aligned_cols=380  Identities=43%  Similarity=0.715  Sum_probs=365.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf             99999999998731347997699981653589999999999982898868987274898997605987898624336799
Q gi|255764478|r   15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCE   94 (418)
Q Consensus        15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~   94 (418)
                      +|+|||+++|++|+|+||||+|+|+++..+.+|+|++++++|++||.+|.+.|.|+++++.+|..++++.|++.|+|..+
T Consensus         3 ~l~~~Ael~v~~~i~~q~g~~v~i~~~~~a~~l~~~i~~~ay~aGa~~V~~~~~d~~~~~~~~~~a~~e~~~~~~~~~~~   82 (385)
T COG2309           3 KLEKYAELLVKVGINLQPGQKVVISAPVDALPLVRLIVKEAYEAGARPVKVCLGDPEVARAVYTLAPDEEFEEIPEWEAA   82 (385)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCHHHHCCCCHHHHH
T ss_conf             28999999998460458998399967564699999999999985333143010783055565506833442444289999


Q ss_pred             HHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHH
Q ss_conf             99999847978999815973243079988999888988999899999984588735999659989998736899977899
Q gi|255764478|r   95 GLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAI  174 (418)
Q Consensus        95 ~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~  174 (418)
                      .+.++.....+++.+.+.+  ++...+|.|+++++++....+++++..++.++++||++++|+++|||++||     .++
T Consensus        83 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~va~~~ka~~~~~~~~~~~~~~~~~~Wtv~~~p~~~~A~~v~~-----~~~  155 (385)
T COG2309          83 AMEEADANGAARLPINTEG--LLDEEDPAKVAAAQKAGAKAVKPVRISISSNKVSWTVVRYPAPSWAKRVFP-----EAV  155 (385)
T ss_pred             HHHHHHHCCEEECCCCCCC--CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH-----HHH
T ss_conf             9764421434532555543--346788178999987504012678998623666259983378779987502-----305


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CCEEEEEECCCCEECCCCCCCCCCCCCCCC
Q ss_conf             9999999999742665979999999999999999730168479999769-964999955882622788602589714686
Q gi|255764478|r  175 AKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGP-NTSLKVGLAEGHRWSGGSSIAQNGIMCNPN  253 (418)
Q Consensus       175 ~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~-gTDLt~~l~~~~~w~~~~~~~~~G~~~~~N  253 (418)
                      ..|||++|++|++|.      |++|.+.|++++++||++  .+||+++| ||||||+++++|.|.++++.+..|   .+|
T Consensus       156 ~~~~d~i~~a~~~D~------w~~~~~~l~~~ae~Ln~~--~~Vh~~tp~gTDLt~~l~~~~~~~~~g~~~~~~---~~N  224 (385)
T COG2309         156 AKLEDFIFRAVRVDE------WEEHSALLEKLAEILNEA--SAVHITTPGGTDLTFGLAGRHAWNDAGSVNKGG---NAN  224 (385)
T ss_pred             HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCC--CEEEEECCCCCEEEEECCCCEEECCCCCCCCCC---CCC
T ss_conf             662999998751578------999999999999983887--579995899750699758960651677668787---788


Q ss_pred             CCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf             78631695131473418999700330354022686999978899999854379999988642898526879998668620
Q gi|255764478|r  254 IPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLNKILDIDEGARRLGEVALVPHSSL  333 (418)
Q Consensus       254 lP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~d~~a~~igE~~ig~n~~~  333 (418)
                      ||+|||||+|++++|||+++||+|++|+|+++++|+|+||||+||+++|+++++.|+.++++|||||||||||||+    
T Consensus       225 mPtgEVFtaP~~~sv~G~V~~~~Pl~~~G~lie~i~l~FedG~VV~~sa~~~E~vl~~~ldTDegAr~LGE~alg~----  300 (385)
T COG2309         225 MPTGEVFTAPHEDSVNGVVVFDKPLSYQGTLIEGIRLTFEDGKVVEISAEKGEEVLKRLLDTDEGARRLGELALGP----  300 (385)
T ss_pred             CCCCCEEECCCCCCCCEEEEECCCCCCCCEEEECEEEEEECCEEEEEECCCCHHHHHHHHHCCCCHHHEEEEEEEC----
T ss_conf             9975357666657643599978678858776604499997987999753667899988763382603156788875----


Q ss_pred             HHHHCCCCCCEEEECCCCC--CEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCCCEEEEE
Q ss_conf             0110120033232057526--41226775000367667883443206985012458799678819999981799599988
Q gi|255764478|r  334 LSKMNTLFYDTLFDENAAS--HIAFGQCYSKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIM  411 (418)
Q Consensus       334 i~~~~~l~~n~L~DEk~~~--H~A~G~~y~~~~~~~~~~~~~~~~~~g~n~S~~H~D~~~~~~~i~vdgi~~dG~~~~i~  411 (418)
                      +++++++|||||||||++|  |||||+|||+|+++|..| .++....|.|.|.+|+|+||++++|+|||+++||..+++|
T Consensus       301 ~~~~~~l~~NiLfDEka~~t~HiAiG~aY~~~~~~g~~~-~~~~~~~g~~~s~~h~D~migs~~v~iDG~~~~~~g~~v~  379 (385)
T COG2309         301 NSPIARLFYNILFDEKASGTVHIAIGSAYPFNVEGGAEM-QNESAIHGDNVSDVHVDSMIGSSEVYIDGVLVDGNGEPVF  379 (385)
T ss_pred             CCCCCEEECCCEEECCCCCCEEEECCCCCCCCCCCCCCH-HHHHHCCCCCCCCEEEECCCCCCEEEEEEEEECCCCCEEE
T ss_conf             577674522201213447841065323565434554210-1201004676643244102478617871068527877760


Q ss_pred             ECCEEC
Q ss_conf             678454
Q gi|255764478|r  412 RGGEWA  417 (418)
Q Consensus       412 ~~G~~~  417 (418)
                      ++|+|+
T Consensus       380 ~~g~~a  385 (385)
T COG2309         380 RKGEWA  385 (385)
T ss_pred             CCCCCC
T ss_conf             377769


No 3  
>pfam10575 consensus
Probab=92.39  E-value=0.18  Score=30.17  Aligned_cols=61  Identities=20%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             CCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEC--CCCHHH---HHHHHHHHHHHCCCCCCEEEE
Q ss_conf             520155406999999999999998731347997699981--653589---999999999982898868987
Q gi|255764478|r    2 DKSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMA--PVSALP---LARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus         2 ~~~~~~~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~--d~~a~~---l~ral~~aa~~~GA~~V~v~~   67 (418)
                      ||++.-+++||.. |   -++| ...+|+|.|+-.+|..  .....|   ..|.+.-+.|+.|+..|++.-
T Consensus         2 dKKlaIlTCMDtR-L---~elL-p~AlgiknGDakiIKnAG~~I~hPfGsvmRSllvAIYel~veEI~VIG   67 (159)
T pfam10575         2 NKKVLLLTDIEHG-I---EPII-QQVTNIQPENMLTIHSYDSVIVHPYGDIMRSIIIAIYQENVEEIFVVG   67 (159)
T ss_pred             CCEEEEEECCCCC-H---HHHH-HHHHCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9569999744235-5---9899-998689986778997079543067614999999999974981899982


No 4  
>PRK02947 hypothetical protein; Provisional
Probab=91.44  E-value=0.22  Score=29.53  Aligned_cols=54  Identities=22%  Similarity=0.167  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      =+|++-||+.+++ ..+++|||.++|.+....-++...++..|.++|++ |+..-+
T Consensus        89 ~ER~~g~a~~il~-~~~i~~~Dvlii~SnSG~N~~pVE~A~~ak~~G~~-VIaiTS  142 (247)
T PRK02947         89 LERIEGYAKLILD-RYPIRPGDVLIIVSNSGRNAVPIEMALEAKERGAK-VIAVTS  142 (247)
T ss_pred             HHCCCCHHHHHHH-HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCE-EEEEEC
T ss_conf             2225509999998-67999998899996787776899999999986996-999966


No 5  
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=89.36  E-value=1.8  Score=23.14  Aligned_cols=47  Identities=26%  Similarity=0.263  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999998731347997699981653589999999999982898
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAG   61 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~   61 (418)
                      ++++-||+.+++ -.++|+|+.++|.+....-|+--.+.+.+.+.||+
T Consensus        87 Erieg~~~~~l~-~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~  133 (243)
T COG4821          87 ERIEGYAKLFLH-RLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAK  133 (243)
T ss_pred             HHHHHHHHHHHH-HHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCE
T ss_conf             765317777899-96688788899980799898443899999865976


No 6  
>TIGR01733 AA-adenyl-dom amino acid adenylation domain; InterPro: IPR010071   This entry represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalysed is aa + ATP to aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called 'A-domains' in that context (for a review, see ). A-domains are almost invariably followed by 'T-domains' (thiolation domains, IPR006163 from INTERPRO) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a 'C-domain' (condensation domain, IPR001242 from INTERPRO) which catalyses the ligation of two amino acid thiol-esters from neighbouring modules. This domain is a subset of the AMP-binding domain, which also hits substrate--CoA ligases and luciferases.; GO: 0016874 ligase activity.
Probab=87.07  E-value=2.5  Score=22.17  Aligned_cols=185  Identities=11%  Similarity=0.020  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH---------------
Q ss_conf             99999999999873134799769998165358999999999998289886898727489899760---------------
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYK---------------   78 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~---------------   78 (418)
                      .+=+++|+.|+..+-+|++|+.|-|..+=...-++-.|  +..|+||-||.+.-.-|.-.+.++.               
T Consensus         7 ~~an~LA~~L~~~~ggv~pg~~Va~~~~rs~~~~va~L--AvlKAGaaYVPlDp~~P~~R~~~il~d~~~~~~lt~~~~~   84 (452)
T TIGR01733         7 ERANRLARHLRAAGGGVGPGDRVAILLERSAELVVAIL--AVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALA   84 (452)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH--HHHHHCCEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf             99999999999826888988658998278689999999--9998394851067454189999999852984899766022


Q ss_pred             ----------CCCHHHH--HHCCHHHHHHHHHHH----------HCCC-EEEEEECCCCHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             ----------5987898--624336799999998----------4797-8999815973243079988999888988999
Q gi|255764478|r   79 ----------YGADYAF--DRVADWFCEGLAKAY----------SDNT-ALLSISGDNPLLLVNEDSDKVSRVNQAYLKA  135 (418)
Q Consensus        79 ----------~a~~e~l--~~~p~~~~~~~~~~~----------~~~~-a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~  135 (418)
                                ....++.  .....-.........          -... ||+.-+|-.+-.-|+|.-..-+..+     .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~AYvIyTSGSTG~PKGV~v~Hr~~~n-----~  159 (452)
T TIGR01733        85 ERLAGLVLEEVILLDPLELAALADAPAPPPPAARTDSLPPLLSGPDDLVAYVIYTSGSTGRPKGVVVTHRSLVN-----L  159 (452)
T ss_pred             HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHH-----H
T ss_conf             11001354102423555432334456544455567777766778888258999757888855307721078999-----9


Q ss_pred             HHHHHH-HHHC-----CCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             899999-9845-----887359996599899987368999778999999999999-742665979999999999999999
Q gi|255764478|r  136 YKPALE-RISN-----FDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSV-SRAHCIDPIAAWAEHNNFLHQKSQ  208 (418)
Q Consensus       136 ~k~~~~-~~~~-----~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a-~~~d~~Dpv~~w~~~~~~~~~~~~  208 (418)
                      ...... +..-     ..-+  +.++.          ...-++|++++|-..+.. |.+--.+...    ..........
T Consensus       160 ~~~~~~~~~~~~~~~~~~dr--~l~~~----------~~~FD~Sv~e~f~~L~~Ga~l~~~~~~~~----~~~~~~~~~~  223 (452)
T TIGR01733       160 LAWLARLRYGLDRGNGPDDR--VLQFA----------SLSFDASVEEIFGALLAGATLVVPPEDEE----RLDDAALLAA  223 (452)
T ss_pred             HHHHHHHHCCCCCCCCCCCE--EEECC----------CCCCHHHHHHHHHHHHHCCEEEEECCHHH----HCCHHHHHHH
T ss_conf             99854330245789861022--43106----------65102679999999984957875184232----0532678999


Q ss_pred             HHCCCCEEEEEEE
Q ss_conf             7301684799997
Q gi|255764478|r  209 WLSQRDFAEIRFS  221 (418)
Q Consensus       209 ~Ln~~~~~~i~~~  221 (418)
                      +++..+...++.+
T Consensus       224 ~~~~~~vT~~~~t  236 (452)
T TIGR01733       224 LIAEGPVTVLSLT  236 (452)
T ss_pred             HHHHCCCCEEEEC
T ss_conf             9984497679846


No 7  
>PRK05620 acyl-CoA synthetase; Validated
Probab=81.77  E-value=4.1  Score=20.61  Aligned_cols=52  Identities=15%  Similarity=0.042  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+-+++|..|.+ .++|++||.|.|..+-..+- +.++ -++.++||-+|.++..
T Consensus        46 ~~~~~lA~~L~~-~lGv~~GDrVai~l~n~~e~-v~~~-lA~~~~Gav~vpln~~   97 (571)
T PRK05620         46 ARAAALAHALHD-SFGITGDQRVASMLYNCAEH-LEVL-FAVACMGAVFNPLNKQ   97 (571)
T ss_pred             HHHHHHHHHHHH-CCCCCCCCEEEEECCCCHHH-HHHH-HHHHHHCEEEEEECCC
T ss_conf             999999999987-60969989999993880999-9999-9999859699706777


No 8  
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=75.39  E-value=5.7  Score=19.63  Aligned_cols=43  Identities=21%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             9998731347997699981653589999999999982898868987274
Q gi|255764478|r   22 VALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        22 llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      +.+. ++++++|+.|++.+-.-     -|...+...+||+||++....+
T Consensus        61 lal~-~l~i~~gdeVivp~~tf-----~at~~ai~~~Ga~pvfvDid~~  103 (375)
T PRK11706         61 MAAL-LLDIQPGDEVIMPSYTF-----VSTANAFVLRGAKIVFVDIRPD  103 (375)
T ss_pred             HHHH-HCCCCCCCEEEECCCCH-----HHHHHHHHHCCCEEEEEEECCC
T ss_conf             9999-86988939999899664-----9999999983996999971687


No 9  
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=74.82  E-value=6.5  Score=19.22  Aligned_cols=53  Identities=17%  Similarity=0.108  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      .+.+++|..|..  .+|++||.|.|..+-..+-+ .++. ++.++||-||...+...
T Consensus        56 ~~~~~lA~~L~~--~Gv~~GdrV~l~~~n~~e~v-~~~l-A~~~~Gavpv~~~~~~~  108 (536)
T PRK10946         56 QASDNLACSLRR--QGIKPGETALVQLGNVAEFY-ITFF-ALLKLGVAPVNALFSHQ  108 (536)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH-HHHH-HHHHHCEEEECCCCCCC
T ss_conf             999999999997--59699899999918839999-9999-99970989957888756


No 10 
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=73.37  E-value=7  Score=18.99  Aligned_cols=61  Identities=16%  Similarity=0.156  Sum_probs=31.3

Q ss_pred             HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHH
Q ss_conf             9987313479976999816535899999999999828988689872748989976059878986
Q gi|255764478|r   23 ALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFD   86 (418)
Q Consensus        23 lV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~   86 (418)
                      .+..-.++|+||+|||..-...  +..+...-|...||+ |+..-.+++-.+.....+.+..+.
T Consensus       131 ~l~~~~~~~~g~~vLi~gaaGg--VG~~avQlAk~~Ga~-Vi~t~~s~~k~e~~~~lGA~~vi~  191 (327)
T PRK10754        131 LLRKTYEIKPDEQFLFHAAAGG--VGLIACQWAKALGAK-LIGTVGSAQKAQRALKAGAWQVIN  191 (327)
T ss_pred             HHHHCCCCCCCCEEEEECCCCC--CCHHHHHHHHHCCCE-EEEEECCHHHHHHHHHCCCCEEEE
T ss_conf             7653137899999999817761--126899999986999-999989899999999669999998


No 11 
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273   This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=73.05  E-value=2.9  Score=21.67  Aligned_cols=40  Identities=23%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             HHHHHCCCCCCEEEEECCCCHHHH-HHHHHHHHHHCCCCCC
Q ss_conf             987313479976999816535899-9999999998289886
Q gi|255764478|r   24 LQVGVNIQEGQHLIVMAPVSALPL-ARLITKHAYMLGAGLV   63 (418)
Q Consensus        24 V~~~lniqkGe~VlI~~d~~a~~l-~ral~~aa~~~GA~~V   63 (418)
                      ++.+..|+|||+|+|.=|+.+.-. ++...++....|+..|
T Consensus       102 LRrgF~v~pGek~v~vEDvvTTGGS~~e~~~~i~~~GG~vv  142 (205)
T TIGR01367       102 LRRGFEVKPGEKVVVVEDVVTTGGSLLEAIKAIEELGGQVV  142 (205)
T ss_pred             ECCCEEECCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEE
T ss_conf             11120336997799996211047448999999985798279


No 12 
>PRK00509 argininosuccinate synthase; Provisional
Probab=72.57  E-value=7.3  Score=18.86  Aligned_cols=35  Identities=17%  Similarity=0.009  Sum_probs=27.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCC-CEEEEC
Q ss_conf             76999816535899999999999828988-689872
Q gi|255764478|r   34 QHLIVMAPVSALPLARLITKHAYMLGAGL-VSVFYK   68 (418)
Q Consensus        34 e~VlI~~d~~a~~l~ral~~aa~~~GA~~-V~v~~~   68 (418)
                      |.+-+++|..+.+=..++.+.|.+.||.. +++...
T Consensus        29 eVia~~~d~Gq~~d~~~i~~kA~~~GA~~~~v~D~r   64 (398)
T PRK00509         29 EVVAFTADVGQGEELEPIREKALASGASEIYVEDLR   64 (398)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf             899999979887788999999998299789996309


No 13 
>pfam04015 DUF362 Domain of unknown function (DUF362). Sometimes present in iron-sulphur proteins.
Probab=72.38  E-value=7.2  Score=18.90  Aligned_cols=39  Identities=10%  Similarity=0.117  Sum_probs=29.6

Q ss_pred             HHCCCCCCEEEEECCC-----------CHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             3134799769998165-----------35899999999999828988689
Q gi|255764478|r   27 GVNIQEGQHLIVMAPV-----------SALPLARLITKHAYMLGAGLVSV   65 (418)
Q Consensus        27 ~lniqkGe~VlI~~d~-----------~a~~l~ral~~aa~~~GA~~V~v   65 (418)
                      |+..|||++|||.-..           ..-++++++++.+.++||+.++.
T Consensus        29 Gm~~kpG~kVLIKPNll~~~~pe~~vtThP~vV~Avv~~~~e~Ga~i~vg   78 (262)
T pfam04015        29 GKSNPPGDRVLLKPNFLKANSPERPCITHPEVVSAVVDVLKEQGAEVFMG   78 (262)
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             88789999899858868888987677588899999999999779978998


No 14 
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=69.60  E-value=8.5  Score=18.42  Aligned_cols=112  Identities=15%  Similarity=0.220  Sum_probs=61.7

Q ss_pred             CEEEEEECCCCEECCCCCCCCCCCCCCCCCCCC-CEEEEEECC-CEEEEEEEEE-EEECC-CC-----E---ECCEEEEE
Q ss_conf             649999558826227886025897146867863-169513147-3418999700-33035-40-----2---26869999
Q gi|255764478|r  225 TSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTE-EVFTAPHAR-RVEGYATSTK-PLVYQ-GM-----L---IENIRVRF  292 (418)
Q Consensus       225 TDLt~~l~~~~~w~~~~~~~~~G~~~~~NlP~G-EVftaP~~~-~vnG~i~~d~-p~~~~-G~-----~---~~~~~l~f  292 (418)
                      -.+-++.-++....+-.-...-|..  .+.|+| |+++.|.=+ +..|+|+.+- +.+.. |+     .   -++-++..
T Consensus        36 Q~vQ~~g~~~Et~~D~er~q~yGf~--S~ppaGse~vvv~lGG~rShgviv~~~~~syR~~GL~aGeT~iY~~eG~~i~L  113 (203)
T COG4384          36 QNVQLSGLAGETLQDLERLQEYGFA--SVPPAGSEAVVVPLGGKRSHGVIVVSQHGSYRITGLKAGETVIYNHEGAKIVL  113 (203)
T ss_pred             EEEEEECCCCCHHHHHHHHHHCCCC--CCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEE
T ss_conf             8899855786044304779865864--68999871899965886320399996388611136567746888225748997


Q ss_pred             ECCEEEEEECCCHHHHHHHHHHCCCCC---CEEEEEEEECCCCCHHHHCCCCCCEEEECC
Q ss_conf             788999998543799999886428985---268799986686200110120033232057
Q gi|255764478|r  293 DQGRVVEASASKGEEMLNKILDIDEGA---RRLGEVALVPHSSLLSKMNTLFYDTLFDEN  349 (418)
Q Consensus       293 ~~G~vv~~~a~~~~~~l~~~l~~d~~a---~~igE~~ig~n~~~i~~~~~l~~n~L~DEk  349 (418)
                      ++|++++++|+.-.      +..+.+.   ..+.+|-..     +.+-+.+.||.--|=.
T Consensus       114 teg~~Ie~~ck~~~------v~a~~~v~v~Ap~v~~t~~-----~t~~~~i~GN~~~~v~  162 (203)
T COG4384         114 TEGGIIEADCKTLT------VNAATGVKVNAPLVEFTAV-----LTPQGQINGNGGMAVE  162 (203)
T ss_pred             CCCCEEEEECCEEE------EECCCCEEECCCEEEEEEE-----ECCCEEECCCCEEEEC
T ss_conf             25968998561789------7458852663641588777-----5554388165115622


No 15 
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=69.42  E-value=7.1  Score=18.96  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=18.6

Q ss_pred             HHHHHHCCCCCCEEEEECCCCH--HHHHHHHHH
Q ss_conf             9987313479976999816535--899999999
Q gi|255764478|r   23 ALQVGVNIQEGQHLIVMAPVSA--LPLARLITK   53 (418)
Q Consensus        23 lV~~~lniqkGe~VlI~~d~~a--~~l~ral~~   53 (418)
                      +=++++.+.+||.+=|-.+-.+  .-+.|-++-
T Consensus        18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat   50 (245)
T COG4555          18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT   50 (245)
T ss_pred             HHHEEEEECCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf             665257850664999876898871237999998


No 16 
>PTZ00165 aspartyl protease; Provisional
Probab=68.98  E-value=8.5  Score=18.42  Aligned_cols=46  Identities=13%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCEEE--EEECCCCEECCCCCCCC
Q ss_conf             99999999973016847999976996499--99558826227886025
Q gi|255764478|r  200 NNFLHQKSQWLSQRDFAEIRFSGPNTSLK--VGLAEGHRWSGGSSIAQ  245 (418)
Q Consensus       200 ~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt--~~l~~~~~w~~~~~~~~  245 (418)
                      ...++.+..++|..-+-+|.+=+|.-.++  |..+..-.|.....+..
T Consensus       140 ~~~~~~LlNf~NaQYyGeI~IGTPPQ~FkVIFDTGSSNLWVPS~~C~s  187 (505)
T PTZ00165        140 TNLQQDLLNFENSQYFGEIEVGTPPKEFVVVFDTGSSQLWIPSKECLN  187 (505)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCEECCCCCCC
T ss_conf             578999765105624787665799961489974887771154576897


No 17 
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=67.40  E-value=9.3  Score=18.12  Aligned_cols=81  Identities=17%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             HCCCCCCEEEEECCCC-----HHHHHHHHHHHHHHCCCCCCEEEE--CCHHHH----HHHHH----------CCCHHHHH
Q ss_conf             1347997699981653-----589999999999982898868987--274898----99760----------59878986
Q gi|255764478|r   28 VNIQEGQHLIVMAPVS-----ALPLARLITKHAYMLGAGLVSVFY--KDSEAT----LMLYK----------YGADYAFD   86 (418)
Q Consensus        28 lniqkGe~VlI~~d~~-----a~~l~ral~~aa~~~GA~~V~v~~--~d~~~~----r~~~~----------~a~~e~l~   86 (418)
                      -.+.+++.++|.++..     ..+.++++.++|.++||..|-.+.  ..+.++    +..|.          |.--+.++
T Consensus         7 r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~   86 (347)
T COG2089           7 RTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAE   86 (347)
T ss_pred             EEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf             43358999579964145565758999999999997386655532035631004033577655555656663999999844


Q ss_pred             HCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             2433679999999847978999
Q gi|255764478|r   87 RVADWFCEGLAKAYSDNTALLS  108 (418)
Q Consensus        87 ~~p~~~~~~~~~~~~~~~a~i~  108 (418)
                      ...+|..+..+.+-+.+-.+++
T Consensus        87 ~p~e~~~~Lke~a~~~Gi~~~S  108 (347)
T COG2089          87 TPLEWHAQLKEYARKRGIIFFS  108 (347)
T ss_pred             CCHHHHHHHHHHHHHCCEEEEE
T ss_conf             9999999999999872938981


No 18 
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase; InterPro: IPR011963   Siderophores are low molecular weight iron-chelating compounds synthesised by many bacteria to aid in the aquisition of this vital trace element . Proteins in this entry are adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores. These proteins belong to the AMP-binding family and are mostly thought to activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. One of these proteins, however, is believed to differ in function, activating salicylate rather than DHB.   The crystal structure of 2,3-dihydroxybenzoate-AMP ligase (P40871 from SWISSPROT) from Bacillus subtilis has been examined . This protein is composed of a large N-terminal domain (~420 aa) and a more compact C-terminal domain (~110 aa), with an overall "hammer-and-anvil" fold similar to that of firefly luciferase . The active site is located in a deep compartment located at the interface of the domains, with a p-loop thought to be involved in catalysis located at the entrance to the cavity. Relatively little conformational change was observed during catalysis.; GO: 0008668 (23-dihydroxybenzoyl)adenylate synthase activity, 0019290 siderophore biosynthetic process.
Probab=66.58  E-value=9.7  Score=18.01  Aligned_cols=50  Identities=20%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+.+++|--+-+  +.||+||+|+|+-+-.++=...-  =|..|+|+-||.--+
T Consensus        56 ~~~~~LA~~l~~--~GI~~GD~a~VQLpNiAEFYi~F--FALlk~G~~Pv~ALf  105 (534)
T TIGR02275        56 QRADNLAAGLTK--LGIKKGDTAVVQLPNIAEFYIVF--FALLKLGVAPVLALF  105 (534)
T ss_pred             HHHHHHHHHHHH--HCCCCCCEEEEECCCHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf             999999999997--04677886888378657899999--999852010222315


No 19 
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189   Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=66.30  E-value=9.8  Score=17.97  Aligned_cols=53  Identities=19%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCC-----CHHHHHHHH-------------HH-HHHHCCCCCCEEEECCHH
Q ss_conf             999999999873134799769998165-----358999999-------------99-999828988689872748
Q gi|255764478|r   16 LEKLAKVALQVGVNIQEGQHLIVMAPV-----SALPLARLI-------------TK-HAYMLGAGLVSVFYKDSE   71 (418)
Q Consensus        16 L~kyA~llV~~~lniqkGe~VlI~~d~-----~a~~l~ral-------------~~-aa~~~GA~~V~v~~~d~~   71 (418)
                      .=-|+.|. ..+ .||+||+|||....     .+.-|++++             .+ ++.++||. +-++|++++
T Consensus       130 fTVW~NLF-~~g-~L~~GEtvLiHGGaSGIGttAIqLAKA~Ga~V~~TaGS~eK~~~a~~~LGAd-~aINY~e~D  201 (334)
T TIGR02824       130 FTVWSNLF-QRG-GLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCATACEALGAD-IAINYREED  201 (334)
T ss_pred             HHHHHHHH-HHC-CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCE-EEEECCCCC
T ss_conf             88888687-221-1378972899713673679999999856975999828989999999860980-786077734


No 20 
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=65.27  E-value=10  Score=17.84  Aligned_cols=52  Identities=17%  Similarity=0.138  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      +.+.+++|..|..  .+|++|+.|.|..+...+ ++.+ +-++.++||-+|.+...
T Consensus        57 ~~~~~~lA~~L~~--~Gv~~GdrVai~~~n~~e-~v~~-~lA~~k~Gav~vpl~~~  108 (548)
T PRK06087         57 DHAASCLANWMLA--KGIESGDRIAFQLPGWCE-FTVI-YLACLKTGAVSVPLLPS  108 (548)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHH-HHHHHHHCEEEEEECCC
T ss_conf             9999999999997--696884999999589799-9999-99999839099967899


No 21 
>PRK07470 acyl-CoA synthetase; Validated
Probab=64.42  E-value=11  Score=17.74  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             99999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      .+.+++|..|..  .++++|+.|.|..+...+-++ ++ -++.++||-+|.+....
T Consensus        40 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e~~~-~~-lA~~~~Gav~vpl~~~~   91 (528)
T PRK07470         40 ARVDALAAALAA--RGLRKGDRILVHSRNCNQMFE-SM-FAAFRLGAVWVPTNFRQ   91 (528)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH-HH-HHHHHHCEEEEECCCCC
T ss_conf             999999999997--595997999999289799999-99-99998494998039879


No 22 
>PRK09274 peptide synthase; Provisional
Probab=64.11  E-value=11  Score=17.70  Aligned_cols=49  Identities=20%  Similarity=0.091  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999873134799769998165358999999999998289886898
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      .+.+++|..|..  .+|++|+.|.|..+... +++.++. ++.++||-+|.++
T Consensus        50 ~~~~~lA~~L~~--~Gv~~GdrV~v~~~n~~-e~v~~~l-A~~~~Gav~vpl~   98 (555)
T PRK09274         50 ARSDAIAHGLNA--HGIGRGMRAVLMVTPSL-EFFALTF-ALFKAGAVPVLVD   98 (555)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCH-HHHHHHH-HHHHHCEEEEEEC
T ss_conf             999999999997--59599899999948929-9999999-9998493999628


No 23 
>PRK05857 acyl-CoA synthetase; Validated
Probab=63.60  E-value=11  Score=17.63  Aligned_cols=54  Identities=15%  Similarity=-0.012  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      +.+.+++|..|..  .++++|+.|.|..+...+ ++.++. ++.++||-+|.+...-+
T Consensus        40 ~~~~~~lA~~L~~--~Gi~~GdrV~l~~~ns~e-~~~a~l-a~~~~Gav~vpi~~~~~   93 (532)
T PRK05857         40 VAEVGGLAADLRA--QSVSRGSRVLVISDNGPE-TYLSVL-ACAKLGAIAVMADGNLP   93 (532)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHHHH-HHHHHCEEEEEECCCCC
T ss_conf             9999999999997--595997999999488499-999999-99984949994289899


No 24 
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=63.55  E-value=11  Score=17.63  Aligned_cols=39  Identities=21%  Similarity=0.170  Sum_probs=27.6

Q ss_pred             HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             73134799769998165358999999999998289886898727
Q gi|255764478|r   26 VGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        26 ~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      .+++++||+.|++.+-.-     -+...++..+||+||++.+..
T Consensus        66 ~al~i~~gdeVi~p~~tf-----~at~~ai~~~Ga~pvf~Did~  104 (379)
T PRK11658         66 MALGIGPGDEVITPSQTW-----VSTLNMIVLLGATPVMVDVDR  104 (379)
T ss_pred             HHCCCCCCCEEEECCCCH-----HHHHHHHHHCCCEEEEECCCC
T ss_conf             986988839999899556-----999999998199899745745


No 25 
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=62.99  E-value=11  Score=17.56  Aligned_cols=55  Identities=20%  Similarity=0.086  Sum_probs=34.6

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC--CC-------------HHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             1554069999999999999987313479976999816--53-------------58999999999998289886898
Q gi|255764478|r    5 ISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAP--VS-------------ALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus         5 ~~~~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d--~~-------------a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      +|+-+..++-++++..+       .+|+|+.|+|.-.  +.             ...-.+..++++.++||.||++.
T Consensus        45 rSsrsF~~eGr~~~vl~-------~~~~GD~v~IqFGhND~~~~~~~~~~~~~ty~~nL~~~i~~~r~~ga~pIL~T  114 (198)
T cd01821          45 RSSRSFRDEGRWDAILK-------LIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVT  114 (198)
T ss_pred             CCHHHHHHCCCHHHHHH-------HCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             61155563575999998-------54889889998356667888988768688999999999999997599899975


No 26 
>PRK08316 acyl-CoA synthetase; Validated
Probab=62.22  E-value=12  Score=17.47  Aligned_cols=51  Identities=22%  Similarity=0.230  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|..  .+|++|+.|.|..+...+-++ + .-++.++||-+|.+...
T Consensus        44 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~ns~e~~~-~-~lA~~~~Gav~vpl~~~   94 (525)
T PRK08316         44 AAVDRAAAALLD--LGLKKGDRVAALAHNSDAYAL-L-RFACARAGAVLVPVNFM   94 (525)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH-H-HHHHHHHCEEEEEECCC
T ss_conf             999999999997--394986999999089899999-9-99999859199977898


No 27 
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules.  Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells.  Subsequently, virus-infected or malignantly transformed cells can be eliminated.  TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=61.41  E-value=12  Score=17.37  Aligned_cols=62  Identities=15%  Similarity=0.310  Sum_probs=36.2

Q ss_pred             EEEECCCEEEEEEEEEEE-ECCC----CEECCEEEEEECCEEEEEECCCHH--HHHHHH----HHCCCCCCEEEE
Q ss_conf             513147341899970033-0354----022686999978899999854379--999988----642898526879
Q gi|255764478|r  261 TAPHARRVEGYATSTKPL-VYQG----MLIENIRVRFDQGRVVEASASKGE--EMLNKI----LDIDEGARRLGE  324 (418)
Q Consensus       261 taP~~~~vnG~i~~d~p~-~~~G----~~~~~~~l~f~~G~vv~~~a~~~~--~~l~~~----l~~d~~a~~igE  324 (418)
                      ++|  ..+.|.|.|..-. .|.+    .+.+++.|+++.|+.+-+-|+.|.  -.|-++    +....|.-++..
T Consensus         3 ~~p--~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg   75 (226)
T cd03248           3 LAP--DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG   75 (226)
T ss_pred             CCC--CCCEEEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf             064--3455599999889988999999437453899829999999999998499999999645467887899999


No 28 
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=61.19  E-value=12  Score=17.35  Aligned_cols=38  Identities=13%  Similarity=0.072  Sum_probs=28.5

Q ss_pred             HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             7313479976999816535899999999999828988689872
Q gi|255764478|r   26 VGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        26 ~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      ..+++++|+.|++.+-.-     -+.+.++..+||+||++...
T Consensus        62 ~al~~~~gdeVivp~~tf-----~at~~ai~~~Ga~pvf~Dvd   99 (380)
T TIGR03588        62 LALGVGPGDEVWTTPITF-----VATANCALYCGAKVDFVDID   99 (380)
T ss_pred             HHCCCCCCCEEEECCCCC-----HHHHHHHHHCCCEEEEEECC
T ss_conf             984999989999678530-----88679999879968998441


No 29 
>PRK12406 acyl-CoA synthetase; Provisional
Probab=61.09  E-value=12  Score=17.33  Aligned_cols=52  Identities=19%  Similarity=0.090  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             99999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      .+.+++|..|.+  ++|++|+.|.|..+...+-++-  .-++.++||-+|.++...
T Consensus        20 ~~~~~lA~~L~~--~Gv~~Gd~V~l~~~n~~e~v~~--~lA~~~~Gav~vpl~~~~   71 (510)
T PRK12406         20 QRAARAAGGLAA--LGVRPGDCVAVLMRNDFAFLEA--AYAAMRLGAYAVPVNWHF   71 (510)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHHH--HHHHHHHCCEEEEECCCC
T ss_conf             999999999997--5959989999990882999999--999998592999879999


No 30 
>PRK09620 hypothetical protein; Provisional
Probab=61.08  E-value=11  Score=17.53  Aligned_cols=34  Identities=15%  Similarity=0.329  Sum_probs=25.3

Q ss_pred             CCCEEEEECCCCHH--------------HHHHHHHHHHHHCCCCCCEE
Q ss_conf             99769998165358--------------99999999999828988689
Q gi|255764478|r   32 EGQHLIVMAPVSAL--------------PLARLITKHAYMLGAGLVSV   65 (418)
Q Consensus        32 kGe~VlI~~d~~a~--------------~l~ral~~aa~~~GA~~V~v   65 (418)
                      +|-+|||++....+              .++.+++++|+.+||..+.+
T Consensus         2 ~GkkVLITaG~T~E~IDpVR~ItN~SSGkmG~aiA~~a~~~GA~Vtli   49 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL   49 (229)
T ss_pred             CCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             998999958887566688456277682399999999999779979999


No 31 
>KOG1176 consensus
Probab=60.94  E-value=12  Score=17.32  Aligned_cols=52  Identities=21%  Similarity=0.192  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+..++|.-|..-++++++||.|.|.++-...  .-+++-++...||-...++.
T Consensus        53 ~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~--~~~~~la~~~~Ga~~~~~Np  104 (537)
T KOG1176          53 DRCRRLASALSELGLGIKKGDVVGILAPNTPE--FVELALAVPMAGAVLNPLNP  104 (537)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH--HHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999998647886789889997789889--99999999866874445685


No 32 
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=60.43  E-value=12  Score=17.26  Aligned_cols=45  Identities=11%  Similarity=0.132  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999999987313479976999816535899999999999828988
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGL   62 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~   62 (418)
                      .+..++|..|.  .++|+|||.|.|..+-..+-++  ..-++.++||-.
T Consensus       115 ~~v~rlA~~L~--~~GV~~GDrVai~lpn~~E~vv--a~lA~~kiGAv~  159 (648)
T PRK00174        115 REVCRFANALK--KLGVKKGDRVAIYMPMIPEAAV--AMLACARIGAIH  159 (648)
T ss_pred             HHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHHH--HHHHHHHHCEEE
T ss_conf             99999999999--7396998999998799899999--999999819088


No 33 
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558   This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=59.90  E-value=13  Score=17.20  Aligned_cols=126  Identities=18%  Similarity=0.267  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEE--ECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCH
Q ss_conf             8999999999998289886898--72748989976059878986243367999999984797899981597324307998
Q gi|255764478|r   45 LPLARLITKHAYMLGAGLVSVF--YKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDS  122 (418)
Q Consensus        45 ~~l~ral~~aa~~~GA~~V~v~--~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd~  122 (418)
                      .+|+.++.+.+.++|=.-|-+.  |.-|        +-+.|.|...-+|                         ....+|
T Consensus       189 ~e~i~~~~~~~R~~Gf~SiN~DLIYGLP--------~Qt~esF~~Tl~~-------------------------v~~LnP  235 (462)
T TIGR00538       189 EEMIFELMEKAREAGFESINLDLIYGLP--------KQTKESFEKTLEK-------------------------VAELNP  235 (462)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCC--------CCCHHHHHHHHHH-------------------------HHHCCC
T ss_conf             8999999999986698278742013888--------8786789999999-------------------------853187


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             89998889889998999999845887359996599899987368999778999999999999742665979999999999
Q gi|255764478|r  123 DKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNF  202 (418)
Q Consensus       123 ~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~  202 (418)
                      +|++.++-|+-+..|+.+.++..       .+-|+            +                          ++-.+-
T Consensus       236 DRlAvFnyAyvP~vk~~q~k~~~-------~~LPS------------~--------------------------~~KL~I  270 (462)
T TIGR00538       236 DRLAVFNYAYVPWVKPAQRKIPE-------EALPS------------A--------------------------EEKLEI  270 (462)
T ss_pred             CEEHHHHHHHHCCHHHHHCCCCH-------HCCCC------------H--------------------------HHHHHH
T ss_conf             70012102221015778502762-------00588------------7--------------------------899999


Q ss_pred             HHHHHHHHCCCCEEEE---EEECCCCEEEEEECCCCEECCCCCCCCCCC
Q ss_conf             9999997301684799---997699649999558826227886025897
Q gi|255764478|r  203 LHQKSQWLSQRDFAEI---RFSGPNTSLKVGLAEGHRWSGGSSIAQNGI  248 (418)
Q Consensus       203 ~~~~~~~Ln~~~~~~i---~~~~~gTDLt~~l~~~~~w~~~~~~~~~G~  248 (418)
                      ++.++..|+++.|+-|   |+.-|.=.|-+-.-++-.|.+=-|+|+.+.
T Consensus       271 l~~~I~~L~~~gY~fIGMDHFAkpddELavAqr~geL~RNFQGYTT~~~  319 (462)
T TIGR00538       271 LEETIAFLTEAGYVFIGMDHFAKPDDELAVAQRKGELHRNFQGYTTKKE  319 (462)
T ss_pred             HHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             9999999975797585144577971389999850530005765224897


No 34 
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=59.82  E-value=13  Score=17.19  Aligned_cols=50  Identities=22%  Similarity=0.263  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             999999999999873134799769998165358999999999998289886898
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      +.+..++|..|.  .++|++||.|.|..+...+- +.+ .-++.++||-+|.+.
T Consensus        80 ~~~~~rlA~~L~--~~GV~~GDrV~i~~pn~~e~-v~a-~lA~~k~Gav~vpl~  129 (570)
T PRK04319         80 KRLSNKFANVLK--ELGVEKGDRVFIFMPRSPEL-YFA-LLGALKIGAIVGPLF  129 (570)
T ss_pred             HHHHHHHHHHHH--HCCCCCCCEEEEECCCHHHH-HHH-HHHHHHHCCEEEEEC
T ss_conf             999999999999--76969899999991882999-999-999998694999308


No 35 
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=59.82  E-value=13  Score=17.19  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=12.8

Q ss_pred             CHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf             37999998864289852687999866
Q gi|255764478|r  304 KGEEMLNKILDIDEGARRLGEVALVP  329 (418)
Q Consensus       304 ~~~~~l~~~l~~d~~a~~igE~~ig~  329 (418)
                      ...+.+-++++. -||.-.|=+.+.-
T Consensus       190 ~T~~~~~~l~~~-~ga~v~G~~~li~  214 (238)
T PRK08558        190 ETQRALLELCRQ-AGADVVGVFFLIA  214 (238)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEEEEEE
T ss_conf             389999999998-6997999999998


No 36 
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136   This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=59.51  E-value=13  Score=17.15  Aligned_cols=243  Identities=16%  Similarity=0.093  Sum_probs=114.2

Q ss_pred             HHHHHHC-CCCCCEEEEE-CCCCH-HHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             9987313-4799769998-16535-8999999999998289886898727489899760598789862433679999999
Q gi|255764478|r   23 ALQVGVN-IQEGQHLIVM-APVSA-LPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKA   99 (418)
Q Consensus        23 lV~~~ln-iqkGe~VlI~-~d~~a-~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~   99 (418)
                      -..-|.+ |..++.++|= +.... ..|++ +.++|.++|||.|.|              ++++||            +.
T Consensus       491 aW~~G~d~L~~~dvLviDEAGMV~S~Qm~r-~l~~A~~AGaKvVLv--------------GD~~QL------------qa  543 (888)
T TIGR02768       491 AWANGRDLLEDKDVLVIDEAGMVGSRQMAR-VLKEAEEAGAKVVLV--------------GDPEQL------------QA  543 (888)
T ss_pred             HHHCCCCCCCCCCEEEEECCCCHHHHHHHH-HHHHHHHCCCCEEEE--------------CCHHHH------------CH
T ss_conf             987387522477668985154414677889-999998727605984--------------885782------------44


Q ss_pred             HHCCCEEEEEECCC-CHHHCCCCHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHH
Q ss_conf             84797899981597-32430799889-----9988898899989999998458873599965998999873689997789
Q gi|255764478|r  100 YSDNTALLSISGDN-PLLLVNEDSDK-----VSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIA  173 (418)
Q Consensus       100 ~~~~~a~i~i~~~n-p~~l~~vd~~k-----i~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s  173 (418)
                      ++.+++|-+|.... --+|++|--+|     .+...-|+...-+.+..|..++.+.  +.--              =+.+
T Consensus       544 I~AGaaFRaia~riG~~El~~vrRQre~W~R~As~~LArG~v~~aL~aY~~~G~i~--~~~t--------------r~~A  607 (888)
T TIGR02768       544 IEAGAAFRAIAERIGYAELETVRRQREAWARQASLELARGEVEEALAAYRDHGHIT--IADT--------------REEA  607 (888)
T ss_pred             HHCCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEE--EECC--------------HHHH
T ss_conf             24475001234101403254641002488899989752788789999998639443--5314--------------7899


Q ss_pred             HHHHHHHHHHHHH-CCCCCHH--------HHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CCEEEEEECCCCEECCCCCC
Q ss_conf             9999999999974-2665979--------999999999999999730168479999769-96499995588262278860
Q gi|255764478|r  174 IAKLANTIFSVSR-AHCIDPI--------AAWAEHNNFLHQKSQWLSQRDFAEIRFSGP-NTSLKVGLAEGHRWSGGSSI  243 (418)
Q Consensus       174 ~~~l~~~if~a~~-~d~~Dpv--------~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~-gTDLt~~l~~~~~w~~~~~~  243 (418)
                      ++.+--..-.+.. .++.+-.        .+=--+.+...+=++.||..=-..+.-.+. |-+|-++-+|.|.=  -+..
T Consensus       608 ~~~~vadw~~d~~~~~~~~t~eGrdGrlrGdeli~LAH~r~DVr~LN~~~RE~l~~~~~lg~~lGlsdGPdrGd--rGdv  685 (888)
T TIGR02768       608 IEQVVADWKEDRREANQEETREGRDGRLRGDELIILAHTRKDVRALNEAAREALKERGELGESLGLSDGPDRGD--RGDV  685 (888)
T ss_pred             HHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCC
T ss_conf             99999999998740150002134565424112100032058999999999999874664111147567888887--6763


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEEE----------EECCEEEEEEC---C--CHHHH
Q ss_conf             258971468678631695131473418999700330354022686999----------97889999985---4--37999
Q gi|255764478|r  244 AQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVR----------FDQGRVVEASA---S--KGEEM  308 (418)
Q Consensus       244 ~~~G~~~~~NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l~----------f~~G~vv~~~a---~--~~~~~  308 (418)
                      ...|.       +|.|.-.- ..|.+|.-.|+- ==..=.|.++=.|-          +|||.+=-++.   .  .|.-.
T Consensus       686 edrGn-------sGdva~~~-f~T~~G~R~Fa~-GdRi~FL~N~r~LGPrakhsGPqyVKNG~lGTV~~~~~~ae~GD~~  756 (888)
T TIGR02768       686 EDRGN-------SGDVANIL-FRTERGERKFAA-GDRIVFLENDRDLGPRAKHSGPQYVKNGMLGTVEEIEDGAEAGDLR  756 (888)
T ss_pred             CCCCC-------CCCEEEEE-EECCCCCEECCC-CCEEEEEECCCCCCCCCCCCCCCEEECCCCEEHHHHCCCCCCCCCE
T ss_conf             34677-------66501005-506677600158-8627876238766765546788602158501123111654237704


Q ss_pred             HHHHHHCCCCC
Q ss_conf             99886428985
Q gi|255764478|r  309 LNKILDIDEGA  319 (418)
Q Consensus       309 l~~~l~~d~~a  319 (418)
                      |.-.|+...++
T Consensus       757 l~v~LD~~g~a  767 (888)
T TIGR02768       757 LSVQLDSAGGA  767 (888)
T ss_pred             EEEEECCCCCC
T ss_conf             68887788863


No 37 
>pfam04127 DFP DNA / pantothenate metabolism flavoprotein. The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism.
Probab=59.05  E-value=5.6  Score=19.67  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=24.1

Q ss_pred             CCCEEEEECCCCHH--------------HHHHHHHHHHHHCCCCCCEE
Q ss_conf             99769998165358--------------99999999999828988689
Q gi|255764478|r   32 EGQHLIVMAPVSAL--------------PLARLITKHAYMLGAGLVSV   65 (418)
Q Consensus        32 kGe~VlI~~d~~a~--------------~l~ral~~aa~~~GA~~V~v   65 (418)
                      +|-+|||++....+              .++.+|+++|+.+||....+
T Consensus         1 kgk~vlITaG~T~E~ID~VR~ItN~SSGkmG~alA~~~~~~Ga~V~li   48 (197)
T pfam04127         1 KGRRVLVTSGGTREPIDPVRFISNFSSGKMGAAIAEEFLKRGADVTLI   48 (197)
T ss_pred             CCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             998999936886444388315362695599999999999789938997


No 38 
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=57.94  E-value=14  Score=16.97  Aligned_cols=54  Identities=11%  Similarity=0.067  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      ..+.+++|..|..  .+|++|+.|.|..+...+-+  +++-++.++||-+|.+...-+
T Consensus        44 ~~~~~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e~i--~~~la~~~~Gav~vpl~~~~~   97 (517)
T PRK08008         44 NQEINRTANLFYT--LGIRKGDKVALHLDNCPEFI--FCWFGLAKIGAIMVPINARLL   97 (517)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCCEEEEECCCCC
T ss_conf             9999999999997--49588599999938979999--999999986969997788799


No 39 
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=57.36  E-value=14  Score=16.91  Aligned_cols=51  Identities=22%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+.+++|.-|+. -++|++||.|.|..+-..+-++  ..-++.++||-+|.++.
T Consensus        58 ~~~~~lA~~Ll~-~lGv~~Gd~Vai~~~n~~e~v~--a~lA~~k~Gav~vpl~~  108 (560)
T PRK08751         58 QLVEQFAAYLLG-ELQLKKGDRVALMMPNCLQYPI--ATFGVLRAGLTVVNVNP  108 (560)
T ss_pred             HHHHHHHHHHHH-HHCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECC
T ss_conf             999999999999-7398998999999599699999--99999986949982488


No 40 
>PRK07059 acyl-CoA synthetase; Validated
Probab=57.23  E-value=14  Score=16.89  Aligned_cols=51  Identities=18%  Similarity=0.094  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             9999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      +.+.+++|..|.  .++|++|+.|.|..+-..+-+ .++ -++.++||-+|.++.
T Consensus        55 ~~~~~~lA~~L~--~~Gv~~GdrV~i~~~n~~e~~-~~~-lA~~~~Gav~vpl~p  105 (557)
T PRK07059         55 DELSRALGAWLQ--SRGLAKGARVAIMMPNVLQYP-VAI-AAVLRAGYVVVNVNP  105 (557)
T ss_pred             HHHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHH-HHH-HHHHHHCEEEEEECC
T ss_conf             999999999999--759699799999938979999-999-999985939984088


No 41 
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=57.06  E-value=14  Score=16.88  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999999987313479976999816535899999999999828988
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGL   62 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~   62 (418)
                      .+..++|..|.  .++|||||.|.|..+-..+-++-.  -++.++||-.
T Consensus        92 ~~v~rlA~~L~--~~GV~~GDrVai~lpn~~E~via~--lA~~kiGAv~  136 (629)
T PRK10524         92 DEVNRMAAMLR--SLGVQRGDRVLIYMPMIAEAAFAM--LACARIGAIH  136 (629)
T ss_pred             HHHHHHHHHHH--HCCCCCCCEEEEECCCHHHHHHHH--HHHHHHCEEE
T ss_conf             99999999999--749599999999858849999999--9999969599


No 42 
>PRK06368 consensus
Probab=56.95  E-value=14  Score=16.86  Aligned_cols=53  Identities=21%  Similarity=0.174  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      .+.+++|..|.+  .+|++|+.|.|..+...+-++  .+-++.++||-+|.++..-+
T Consensus        40 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e~~~--~~lA~~~~Gav~vpl~~~~~   92 (529)
T PRK06368         40 KRVLNLAKALIS--IGVKKGDVVAVIDWDTYVYLE--AYFAVPMIGAVLHTVNVRYP   92 (529)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEECCCCHHHHH--HHHHHHHHCEEEEEECCCCC
T ss_conf             999999999997--695988999998488799999--99999985979972088899


No 43 
>pfam09890 DUF2117 Uncharacterized protein conserved in archaea (DUF2117). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=56.83  E-value=14  Score=16.85  Aligned_cols=39  Identities=18%  Similarity=0.345  Sum_probs=27.6

Q ss_pred             CCCCCCEEEEEECCCEEEEEEEEEEEECCCCE-ECCEEEEEECCEEEEEECCCHH
Q ss_conf             67863169513147341899970033035402-2686999978899999854379
Q gi|255764478|r  253 NIPTEEVFTAPHARRVEGYATSTKPLVYQGML-IENIRVRFDQGRVVEASASKGE  306 (418)
Q Consensus       253 NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~-~~~~~l~f~~G~vv~~~a~~~~  306 (418)
                      -.|.+-+|       |||+++        |.. -+.+.|..|||++|++.++.-.
T Consensus        94 v~pGE~I~-------VNGiVI--------G~a~s~~V~lvaenG~iv~i~GG~iK  133 (209)
T pfam09890        94 VFPGENIM-------VNGIVI--------GKATSSEVELVSENGFIVDIIGGEIK  133 (209)
T ss_pred             ECCCCCEE-------EEEEEE--------EEECCCCEEEEEECCEEEEEECCEEC
T ss_conf             08999479-------941899--------88648837999819979998784663


No 44 
>PRK07771 consensus
Probab=56.70  E-value=14  Score=16.84  Aligned_cols=51  Identities=14%  Similarity=0.024  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|.  .++|++|+.|.|..+...+-++  .+-++.++||-+|.++..
T Consensus        46 ~~~~~lA~~L~--~~Gv~~GdrVai~~~n~~e~v~--~~lA~~~~Gav~vpl~~~   96 (541)
T PRK07771         46 QRAAQLANALR--RLGVTGDQRVATFMWNNQEHLE--AYFAVPSMGAVLHTLNIR   96 (541)
T ss_pred             HHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEECCCC
T ss_conf             99999999999--7696888999999089799999--999999869699920899


No 45 
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=56.09  E-value=15  Score=16.77  Aligned_cols=168  Identities=15%  Similarity=0.006  Sum_probs=78.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCC
Q ss_conf             69999999999999987313479976999816535899999999999828988689872748989976059878986243
Q gi|255764478|r   10 HVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVA   89 (418)
Q Consensus        10 ~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p   89 (418)
                      +.++..+.+.|+.|...|   |+-...+|.-|..         +-|.+.||.-|++-..|..+...+-..+++--+...-
T Consensus        50 ~~d~~~~~~~a~~L~~lc---~~~gv~lIIND~~---------dlA~~~gADGVHlGq~d~~~~~aR~~lg~~~IIG~~~  117 (221)
T PRK06512         50 GLDEATFQKQAEKYVPVI---QEAGAAALIAGDT---------RIAGRVKADGLHIEGNAAALAEAIEKHAPKMIVGFGN  117 (221)
T ss_pred             CCCHHHHHHHHHHHHHHH---HHCCCCEEECCCH---------HHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEC
T ss_conf             999999999999999999---9829919988979---------9999709986652687531999999847886786405


Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCC
Q ss_conf             36799999998479789998159732430799889998889889998999999845887359996599899987368999
Q gi|255764478|r   90 DWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDP  169 (418)
Q Consensus        90 ~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~  169 (418)
                      -...+.-+.+.+.++-|++..+-.+.......|...        ..++++.   ...+++|+...==|..-+..|..-..
T Consensus       118 ~~s~~~A~~A~e~GADYv~fG~~~~~~k~~a~~~~l--------~~l~~~~---~~~~iP~VAIGGIt~~n~~~v~~aGa  186 (221)
T PRK06512        118 LRDRHGAMEVGELQPDYLFFGKLGADNKPEAHPRNL--------SLAEWWA---EMIEIPCIVQAGSDLASIVEVAETGA  186 (221)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCH--------HHHHHHH---HCCCCCEEEECCCCHHHHHHHHHHCC
T ss_conf             788999999997399857657878888998875425--------8999999---74799989982789999999998199


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             778999999999999742665979999999999999999
Q gi|255764478|r  170 VPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQ  208 (418)
Q Consensus       170 ~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~  208 (418)
                      ...   ..-..||     +.+||-++-.++.+.+.+...
T Consensus       187 d~v---AVisaI~-----~a~Dp~~A~~~l~~llde~~p  217 (221)
T PRK06512        187 EFV---ALGRAVF-----DAHDPPLAVAEANALLDEKAP  217 (221)
T ss_pred             CEE---EEHHHHH-----CCCCHHHHHHHHHHHHHCCCC
T ss_conf             899---8859960-----899999999999998733278


No 46 
>pfam03192 DUF257 Pyrococcus protein of unknown function, DUF257.
Probab=55.81  E-value=15  Score=16.74  Aligned_cols=42  Identities=24%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             3479976999816535--89999999999982898868987274
Q gi|255764478|r   29 NIQEGQHLIVMAPVSA--LPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        29 niqkGe~VlI~~d~~a--~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      ++|+||+|||..+...  .-+...+.+.|.+.|-..++.++-|.
T Consensus         7 ~~k~GEtVLvEysS~~~~~l~~~~ii~~~~e~g~~ilI~DilDt   50 (210)
T pfam03192         7 KIKFGETVLIEYSSSSIPELLFYEIIKWAKEKGIPIVIDDILDT   50 (210)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             68899889999479984788999999999976993899954565


No 47 
>PRK08276 acyl-CoA synthetase; Validated
Probab=55.67  E-value=15  Score=16.72  Aligned_cols=54  Identities=13%  Similarity=0.083  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf             9999999999987313479976999816535899999999999828988689872748
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE   71 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~   71 (418)
                      .+.+++|..|..  .++++|+.|.|..+...+-++-.  -++.++||-+|.+....+.
T Consensus        32 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~~s~e~v~~~--lA~~~~Ga~~vpl~~~~~~   85 (507)
T PRK08276         32 ARSNRLAHGLRA--LGLREGDVVAILLENNPEFFEVM--WAARRSGLYYVPINWHLTA   85 (507)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHHHH--HHHHHHCCEEEEECCCCCH
T ss_conf             999999999997--39499699999938989999999--9999869799963888999


No 48 
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=55.57  E-value=15  Score=16.71  Aligned_cols=89  Identities=21%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             99999873134799769998165358999999999998289886898727489899760598789862433679999999
Q gi|255764478|r   20 AKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKA   99 (418)
Q Consensus        20 A~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~   99 (418)
                      |-.++.....+|+||+|||..-...  +......-|.++|+..+.+.-+++..+ ..-..+.+..+.+..+-..+...++
T Consensus       130 A~~~l~~~~~l~~g~~VLv~gaaGg--VG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~d~~~~v~~~  206 (326)
T COG0604         130 AWLALFDRAGLKPGETVLVHGAAGG--VGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVREL  206 (326)
T ss_pred             HHHHHHHHCCCCCCCEEEEECCCCH--HHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf             9999997617699997999778546--999999999984995899981757889-9987399889705642489999998


Q ss_pred             HHC--CCEEEEEEC
Q ss_conf             847--978999815
Q gi|255764478|r  100 YSD--NTALLSISG  111 (418)
Q Consensus       100 ~~~--~~a~i~i~~  111 (418)
                      ...  -|.++-..+
T Consensus       207 t~g~gvDvv~D~vG  220 (326)
T COG0604         207 TGGKGVDVVLDTVG  220 (326)
T ss_pred             HCCCCCCEEEECCC
T ss_conf             37998788997986


No 49 
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=55.38  E-value=15  Score=16.69  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=13.8

Q ss_pred             HHHHHHHCCCCCCEEEEECCCCH--HHHHHHHH
Q ss_conf             99987313479976999816535--89999999
Q gi|255764478|r   22 VALQVGVNIQEGQHLIVMAPVSA--LPLARLIT   52 (418)
Q Consensus        22 llV~~~lniqkGe~VlI~~d~~a--~~l~ral~   52 (418)
                      +|=+.++.+++||.|-|..+..+  .-|++.+.
T Consensus        52 VLk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~   84 (282)
T cd03291          52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL   84 (282)
T ss_pred             EEECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             141648998499999999999981999999995


No 50 
>PRK09088 acyl-CoA synthetase; Validated
Probab=54.76  E-value=15  Score=16.62  Aligned_cols=54  Identities=24%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf             9999999999987313479976999816535899999999999828988689872748
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE   71 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~   71 (418)
                      .+.+++|..|.+  .+|++|+.|.|..+...+ ++. ..-++.++||-+|.+....+.
T Consensus        30 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~ns~e-~v~-~~lA~~~~Gav~vpl~~~~~~   83 (485)
T PRK09088         30 ALIGRLAAVLRT--RGCVDGERLAVLARNSVW-QVA-LHFACARVGAIYVPLNWRLSA   83 (485)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHH-HHHHHHHHCEEEEEECCCCCH
T ss_conf             999999999997--695998999999189899-999-999999859099965898999


No 51 
>pfam01041 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.
Probab=54.64  E-value=15  Score=16.61  Aligned_cols=38  Identities=24%  Similarity=0.178  Sum_probs=28.0

Q ss_pred             HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             7313479976999816535899999999999828988689872
Q gi|255764478|r   26 VGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        26 ~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .++++++|+.|++.+-.-.     +...++..+||+||++...
T Consensus        58 ~a~~~~~gdeVi~p~~t~~-----at~~ai~~~G~~pvf~Dvd   95 (363)
T pfam01041        58 RALGIGPGDEVIVPSFTFV-----ATANAVLYLGAKPVFVDID   95 (363)
T ss_pred             HHCCCCCCCEEEECCCCCH-----HHHHHHHHCCCEEEEEECC
T ss_conf             9859889299997997759-----8899999869979985064


No 52 
>PRK09192 acyl-CoA synthetase; Validated
Probab=54.50  E-value=15  Score=16.60  Aligned_cols=50  Identities=14%  Similarity=0.104  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             999999999999873134799769998165358999999999998289886898
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      +.+-+++|..|..  ++|++||.|.|..+...+ ++.++ -++.++||-+|.+.
T Consensus        56 ~~~a~rlA~~L~~--~Gv~~GDrVai~~~n~~e-~v~a~-lA~~~aGav~vPl~  105 (580)
T PRK09192         56 RARAEAGARRLLA--LGLKPGDRVALIAETDSD-FVEAF-FACQYAGLVPVPLP  105 (580)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHHH-HHHHHHCEEEECCC
T ss_conf             9999999999997--697979999999388199-99999-99998494995556


No 53 
>PRK08162 acyl-CoA synthetase; Validated
Probab=54.50  E-value=15  Score=16.60  Aligned_cols=51  Identities=20%  Similarity=0.167  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|.-|..  .+|++|+.|.|..+...+ ++.+ .-++.++||-+|.+...
T Consensus        51 ~~~~~lA~~L~~--~Gv~~Gd~Vai~~~n~~e-~v~~-~lA~~~~Gav~vpl~~~  101 (545)
T PRK08162         51 ARCRRLASALAR--RGIGRGDTVAVLLPNIPA-MIEA-HFGVPMAGAVLNTLNTR  101 (545)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCEEEECCCCC
T ss_conf             999999999997--396998999999389699-9999-99999859899722889


No 54 
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=54.00  E-value=16  Score=16.54  Aligned_cols=52  Identities=12%  Similarity=0.121  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      +.+.+++|..|..  .+|++||.|.|..+-..+ ++. +.-++.++||-+|.+...
T Consensus        60 ~~~~~~lA~~L~~--~Gv~~GDrVai~~~n~~e-~v~-~~lA~~~~Gav~vpl~~~  111 (538)
T TIGR03208        60 DCRVDRIAVGLAR--LGVGRGDVVSFQLPNRWE-FTA-LYLACARIGAVLNPLMPI  111 (538)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCHHH-HHH-HHHHHHHHCEEEEEECCC
T ss_conf             9999999999997--596998999999188199-999-999999859399944899


No 55 
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=53.50  E-value=16  Score=16.49  Aligned_cols=50  Identities=14%  Similarity=0.089  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+.+++|..|..  ++|++|+.|.|..+...+-++  ..-++.++||-+|.+..
T Consensus        62 ~~a~~lA~~L~~--~Gv~~Gd~V~i~~~ns~e~v~--~~lA~~k~Gav~vpl~~  111 (546)
T PRK13295         62 ALVDRVAVGLAR--LGVGRGDVVSCQLPNWWQFTV--LYLACSRIGAVLNPLMP  111 (546)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEECCCHHHHHH--HHHHHHHHCEEEEEECC
T ss_conf             999999999997--496997999999188299999--99999984949984689


No 56 
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT,  Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein 
Probab=52.76  E-value=16  Score=16.41  Aligned_cols=42  Identities=21%  Similarity=0.124  Sum_probs=30.1

Q ss_pred             HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             99873134799769998165358999999999998289886898727
Q gi|255764478|r   23 ALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        23 lV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      +.=.++++++|+.|++.+-.-     -+..-++..+||+||++....
T Consensus        48 lal~~l~~~~gdeVi~p~~t~-----~at~~ai~~~G~~pv~~Di~~   89 (352)
T cd00616          48 LALRALGIGPGDEVIVPSFTF-----VATANAILLLGATPVFVDIDP   89 (352)
T ss_pred             HHHHHCCCCCCCEEEECCCCC-----HHHHHHHHHCCCEEEEEECCC
T ss_conf             999986978839999899763-----989999998599899840777


No 57 
>PRK08315 acyl-CoA synthetase; Validated
Probab=52.64  E-value=17  Score=16.40  Aligned_cols=49  Identities=24%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999873134799769998165358999999999998289886898
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      .+.+++|..|.+  .+|++|+.|.|..+-..+ ++.+ .-++.++||-+|.+.
T Consensus        53 ~~~~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e-~v~~-~lA~~~~Gav~vpl~  101 (561)
T PRK08315         53 EEVDALAKGLLA--LGIEKGDRVGIWAPNRPE-WLLT-QFATAKIGAVLVNIN  101 (561)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCEEEEEEC
T ss_conf             999999999997--495997999999089899-9999-999998592998418


No 58 
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=51.45  E-value=17  Score=16.27  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999998731347997699981653589999999999982898
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAG   61 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~   61 (418)
                      .+..++|..|.+  ++|||||.|.|..+-..+-++-.  -++.++||-
T Consensus       100 ~~v~r~A~~L~~--lGV~kGDrVai~mpn~~E~via~--lA~~riGAV  143 (649)
T PTZ00237        100 EKVCEFSRVLLN--LNISKNDNVLIYMANTLEPLIAM--LSCARIGAT  143 (649)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEECCCHHHHHHHH--HHHHHHCCE
T ss_conf             999999999997--39798999999848829999999--999994929


No 59 
>PRK07514 malonyl-CoA synthase; Validated
Probab=51.21  E-value=17  Score=16.25  Aligned_cols=51  Identities=18%  Similarity=0.202  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+..++|..|..  .+|++|+.|.|..+...+-++  ..-++.++||-+|.+...
T Consensus        36 ~~~~~lA~~L~~--~Gv~~GdrV~i~~~n~~e~v~--~~lA~~~~Gav~vpl~~~   86 (504)
T PRK07514         36 AASARLANLLVA--LGVKPGDRVAVQVEKSPEALA--LYLATLRAGAVFLPLNTA   86 (504)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEEECCC
T ss_conf             999999999997--595997999999189899999--999999859199961888


No 60 
>PRK07786 acyl-CoA synthetase; Validated
Probab=50.96  E-value=18  Score=16.22  Aligned_cols=51  Identities=20%  Similarity=0.157  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|..  .+|++||.|.|..+...+-++  ..-++.++||-+|.+...
T Consensus        55 ~~~~~lA~~L~~--~Gv~~GdrVai~~~n~~e~v~--~~lA~~~~Gav~vpl~~~  105 (551)
T PRK07786         55 DRVAALAGALSR--RGVGFGDRVLILMLNRTEFVE--SVLAANMLGAIAVPVNFR  105 (551)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCHHHHHH--HHHHHHHHCCEEEEECCC
T ss_conf             999999999997--596987999999388099999--999999859399956898


No 61 
>PRK12583 acyl-CoA synthetase; Provisional
Probab=50.88  E-value=18  Score=16.21  Aligned_cols=51  Identities=27%  Similarity=0.260  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|.+  ++|++|+.|.|..+...+-+  ...-++.++||-+|.+...
T Consensus        53 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e~v--~~~lA~~~~Gav~vpl~~~  103 (558)
T PRK12583         53 DAVDRLARGLLA--LGVQPGDRVGIWAPNCAEWL--LTQFATARIGAILVNINPA  103 (558)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCEEEEEECCC
T ss_conf             999999999997--49599799999928979999--9999999849399943899


No 62 
>PRK07768 acyl-CoA synthetase; Validated
Probab=49.94  E-value=18  Score=16.11  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      .+.+++|.-|..  .+|+|||.|.|..+...+ ++.++ -++.++||-.+.+....+
T Consensus        37 ~~~~rlA~~L~~--~Gv~~GdrVai~~~n~~e-~~~~~-la~~~~Ga~~v~l~~~~~   89 (543)
T PRK07768         37 ERARRIAGGLAA--AGVGPGDAVAVLAGAPVE-IAPTA-QGLWMRGASLTMLHQPTP   89 (543)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHHH-HHHHHHCCEEECCCCCCC
T ss_conf             999999999997--696999999998689899-99999-999984909967699987


No 63 
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=49.75  E-value=18  Score=16.09  Aligned_cols=55  Identities=15%  Similarity=0.037  Sum_probs=47.5

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCC
Q ss_conf             40699999999999999873134799769998165--35899999999999828988
Q gi|255764478|r    8 VAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGAGL   62 (418)
Q Consensus         8 ~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~   62 (418)
                      +.-|++....+++.-+.++-.+-.++..|+|-.|.  .+..|++++.+.....|.+.
T Consensus        11 ~~~~t~~~v~~~~~a~a~~l~~~~~~~~VvVG~D~R~~S~~~a~~~a~~l~s~Gi~V   67 (459)
T cd03088          11 VTDLTDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDAGFRV   67 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf             588999999999999999999758998699996899787999999999999779979


No 64 
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.74  E-value=18  Score=16.09  Aligned_cols=52  Identities=19%  Similarity=0.187  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             99999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      .+.+++|..|.+.+  |++|+.|.|..+...+ ++.++ -++.++||-+|.++...
T Consensus        46 ~~~~~~A~~L~~~~--v~~gdrVail~~N~~e-~~~~~-~a~~~~Gav~vpln~~~   97 (534)
T COG0318          46 RRANRLAAALQALG--VKPGDRVAILLPNSPE-FLIAF-LAALRAGAVAVPLNPRL   97 (534)
T ss_pred             HHHHHHHHHHHHHC--CCCCCEEEEECCCCHH-HHHHH-HHHHHCCCEEEECCCCC
T ss_conf             99999999999848--8889989998788799-99999-99997698899769877


No 65 
>PRK06219 consensus
Probab=49.57  E-value=18  Score=16.08  Aligned_cols=50  Identities=24%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+.+++|..|..  ++|++|+.|.|..+...+-+ .+ +-++.++||-+|.+..
T Consensus        50 ~~~~~lA~~L~~--~Gv~~GDrV~i~~~n~~e~~-~~-~lA~~~~Gav~vpl~~   99 (547)
T PRK06219         50 ERIARLANVLTA--AGVKAGDTVAVMDWDSHRYL-EC-FFAIPMIGAVLHTINV   99 (547)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEECCCCHHHH-HH-HHHHHHHCEEEECCCC
T ss_conf             999999999997--69699899999868879999-99-9999985979975499


No 66 
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit; InterPro: IPR012736   In bacteria, dihydroxyacetone is formed by the oxidation of glycerol or the aldol cleavage of fructose-6-phosphate. Dihydroxyacetone kinase converts this compound to the glycolytic intermediate dihydroxyacetone phosphate. Two forms of this enzyme have been shown to exist, using either ATP or a phosphoprotein of the phosphoenolpyruvate: sugar phosphotransferase system (PTS) as phosphate donor. The ATP-dependent kinases (2.7.1.29 from EC) are single-subunit enzymes that are composed of two domains . The phosphoprotein-dependent kinases are composed of three subunits: DhaK and DhaL, which are homologous to the domains from the ATP-dependent enzyme; and DhaM which is a component of the PTS system .   This entry represents the DhaK subunit of phosphoprotein-dependent dihydroxyacetone kinase. The model excludes the DhaK paralog DhaK2 (IPR012735 from INTERPRO) encoded in the same operon as DhaK in the firmicutes, with which it sometimes exists as a DhaK/DhaK2 fusion. This subunit is a homodimer which contains the dihydroxyacetone-binding site . The overall fold consists of two six-stranded mixed beta-sheets surrounded by nine alpha-helices and a beta-ribbon covering the exposed edge strand of one sheet. .
Probab=49.33  E-value=3.7  Score=20.95  Aligned_cols=98  Identities=29%  Similarity=0.344  Sum_probs=53.1

Q ss_pred             CCCEEEEEECCC----------EEEEEEEEEEEECCCC-----------EECCEEEE---EECCEEEE---EE-------
Q ss_conf             631695131473----------4189997003303540-----------22686999---97889999---98-------
Q gi|255764478|r  256 TEEVFTAPHARR----------VEGYATSTKPLVYQGM-----------LIENIRVR---FDQGRVVE---AS-------  301 (418)
Q Consensus       256 ~GEVftaP~~~~----------vnG~i~~d~p~~~~G~-----------~~~~~~l~---f~~G~vv~---~~-------  301 (418)
                      .|||||||-.+.          -.|++.+=|  .|-|=           ..|+|+.+   +.|=..|+   |+       
T Consensus        76 ~GeVFTSPTPDqI~~AikAVD~G~GVLLIVK--NYtGDVmNFeMA~ElAE~eGI~V~~VvVdDDiAVeDS~YT~GRRGVA  153 (354)
T TIGR02363        76 PGEVFTSPTPDQILEAIKAVDQGAGVLLIVK--NYTGDVMNFEMAAELAEAEGIKVEQVVVDDDIAVEDSLYTAGRRGVA  153 (354)
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE--CCCCCCCCHHHHHHHHHCCCCEEEEEEEECCEEEECCCCCCCCCCCC
T ss_conf             8788889785489998983037891379985--35588350778999862279766579980643322485044550420


Q ss_pred             ------------CCCHHH--HHHHHHH-CCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEECC---CCCCEECCC
Q ss_conf             ------------543799--9998864-28985268799986686200110120033232057---526412267
Q gi|255764478|r  302 ------------ASKGEE--MLNKILD-IDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDEN---AASHIAFGQ  358 (418)
Q Consensus       302 ------------a~~~~~--~l~~~l~-~d~~a~~igE~~ig~n~~~i~~~~~l~~n~L~DEk---~~~H~A~G~  358 (418)
                                  |++|..  .++++-+ .-++.|-+| +||.+-.-|  ..|+-.+.+=.||=   ++-|=-.|.
T Consensus       154 GTvfVhKI~GAaAE~G~~L~~~~~lg~~v~~~~ksiG-vAL~~cTVP--~~GKP~F~L~ddEmE~GvGIHGEPG~  225 (354)
T TIGR02363       154 GTVFVHKIAGAAAEKGASLDELKALGEKVVKNTKSIG-VALTACTVP--AVGKPSFDLADDEMEIGVGIHGEPGI  225 (354)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE-EECCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf             5788899999974068888999989888861224336-786778778--77888722588707873104688896


No 67 
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=49.26  E-value=19  Score=16.04  Aligned_cols=40  Identities=25%  Similarity=0.456  Sum_probs=25.7

Q ss_pred             CCCCCCEEEEEECCCEEEE-EEEEEEEECCCCEECCEEEEEECCEEEEEECCCHH
Q ss_conf             6786316951314734189-99700330354022686999978899999854379
Q gi|255764478|r  253 NIPTEEVFTAPHARRVEGY-ATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGE  306 (418)
Q Consensus       253 NlP~GEVftaP~~~~vnG~-i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~  306 (418)
                      --|.||++=-|    +||. +.|+          +.+-.+|++|||++.-+--..
T Consensus        83 ctp~G~i~Gip----~nGkrV~Fs----------e~vfy~f~~~KI~~vwsv~Dk  123 (131)
T COG5485          83 CTPSGEIMGIP----PNGKRVRFS----------ENVFYEFENGKIVEVWSVIDK  123 (131)
T ss_pred             CCCCCEEECCC----CCCCEEEEE----------HHHHHHHCCCEEEEEEHHCCH
T ss_conf             67673385447----888588866----------230232208757755012209


No 68 
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=48.76  E-value=19  Score=15.99  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=17.9

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf             999998543799999886428985268799986
Q gi|255764478|r  296 RVVEASASKGEEMLNKILDIDEGARRLGEVALV  328 (418)
Q Consensus       296 ~vv~~~a~~~~~~l~~~l~~d~~a~~igE~~ig  328 (418)
                      +++.++...-.++++.+++.+  +--+|==.++
T Consensus       279 ~~~~~~~~~~~eI~~~i~~a~--~~vvGsPT~~  309 (388)
T COG0426         279 EVINLEDADPSEIVEEILDAK--GLVVGSPTIN  309 (388)
T ss_pred             EEEECCCCCHHHHHHHHHHCC--EEEEECCCCC
T ss_conf             999915588999999987537--7999568646


No 69 
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=48.38  E-value=19  Score=15.95  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      .+.+++|..|..  .++++|+.|.|..+...+-++  ..-++.++||-+|.+....+
T Consensus        35 ~~~~~~A~~L~~--~Gv~~gd~V~i~~~n~~e~~~--~~lA~~~~Gav~vpl~~~~~   87 (481)
T PRK03640         35 EKVVSVAEKLAH--VGVKKGDRVALLMKNGMEMIL--VIHALQYLGAVAVLLNTRLS   87 (481)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECCCCC
T ss_conf             999999999997--494888999999389899999--99999985959997799899


No 70 
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=48.09  E-value=19  Score=15.92  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      +.+.+++|..|..  ++|++|+.|.|..+... +++.+ .-++.++||-+|.+....+
T Consensus        65 ~~~~~~lA~~L~~--~Gv~~GdrVai~~~ns~-e~v~~-~lA~~~~Gav~vpl~~~~~  118 (552)
T PRK06155         65 AAIAAAAAQALAA--AGVKPGDRVALMCGNRP-EFLDV-YLGCAWLGAIAVPINTALR  118 (552)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCH-HHHHH-HHHHHHHCEEEEEECCCCC
T ss_conf             9999999999997--59699799999918969-99999-9999984919996789899


No 71 
>PRK07770 consensus
Probab=47.79  E-value=20  Score=15.89  Aligned_cols=53  Identities=19%  Similarity=0.186  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      .+.+++|..|.+  +++++|+.|.|..+...+-+  ...-++.++||-+|.+....+
T Consensus        40 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e~~--~~~la~~~~Gav~vpl~~~~~   92 (508)
T PRK07770         40 DRVRRAAAALIA--LGVEPGDRVAIWAPNSAHWV--VAALALHTAGAVLVPLNTRYK   92 (508)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCCEEEEECCCCC
T ss_conf             999999999997--59598799999938979999--999999985959997699999


No 72 
>KOG1197 consensus
Probab=47.78  E-value=20  Score=15.89  Aligned_cols=90  Identities=20%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCHHHH-----HHHH-------------HHHHHHCCCCCCEEEECCHHHHHHHHHCC-
Q ss_conf             9999987313479976999816535899-----9999-------------99999828988689872748989976059-
Q gi|255764478|r   20 AKVALQVGVNIQEGQHLIVMAPVSALPL-----ARLI-------------TKHAYMLGAGLVSVFYKDSEATLMLYKYG-   80 (418)
Q Consensus        20 A~llV~~~lniqkGe~VlI~~d~~a~~l-----~ral-------------~~aa~~~GA~~V~v~~~d~~~~r~~~~~a-   80 (418)
                      |..+++.|-+||||++||+.+-..-.-+     .|++             .+.|.+-||+++ +.++.+...+.-.++. 
T Consensus       134 Ay~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~-I~y~~eD~v~~V~kiTn  212 (336)
T KOG1197         134 AYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHP-IDYSTEDYVDEVKKITN  212 (336)
T ss_pred             HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCE-EECCCHHHHHHHHHCCC
T ss_conf             99999986588999789998315628799999997528679997253788999986487430-00450569999984148


Q ss_pred             ---CHHHHHHCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             ---878986243367999999984797899981
Q gi|255764478|r   81 ---ADYAFDRVADWFCEGLAKAYSDNTALLSIS  110 (418)
Q Consensus        81 ---~~e~l~~~p~~~~~~~~~~~~~~~a~i~i~  110 (418)
                         -+-.++.+-.-..+....+.+.+..+.+..
T Consensus       213 gKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG  245 (336)
T KOG1197         213 GKGVDAVYDSVGKDTFAKSLAALKPMGKMVSFG  245 (336)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             877105632656414677899753486699823


No 73 
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=47.77  E-value=20  Score=15.89  Aligned_cols=24  Identities=8%  Similarity=0.072  Sum_probs=10.5

Q ss_pred             CCCC-CCEEEEEECCCEEEEEEEEE
Q ss_conf             6786-31695131473418999700
Q gi|255764478|r  253 NIPT-EEVFTAPHARRVEGYATSTK  276 (418)
Q Consensus       253 NlP~-GEVftaP~~~~vnG~i~~d~  276 (418)
                      .+|+ ||+-..---+..+|.++.+.
T Consensus        83 gl~~~~e~~~~~~Tgys~g~iy~n~  107 (184)
T PRK12560         83 SLSELNNNVVNISSEYFEGVVYLNG  107 (184)
T ss_pred             CCCCCCEEEEEEECCEEEEEEEECC
T ss_conf             8887852888751555776897046


No 74 
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357   Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family.   The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=47.06  E-value=20  Score=15.82  Aligned_cols=69  Identities=10%  Similarity=0.080  Sum_probs=30.9

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCE--EEEEECCCEEEEEE
Q ss_conf             999999730168479999769964999955882622788602589714686786316--95131473418999
Q gi|255764478|r  203 LHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTEEV--FTAPHARRVEGYAT  273 (418)
Q Consensus       203 ~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w~~~~~~~~~G~~~~~NlP~GEV--ftaP~~~~vnG~i~  273 (418)
                      -+.++++|+.+.|+.=++.+..=-+-++-.. +- .--.++...|.+|+..=-+..+  |+.=--+++|-.||
T Consensus       229 ~~Av~~Il~SKtFDnGtICASEQSvivE~~n-~~-aVv~Elk~QG~yFl~~ee~~~l~kf~lr~ngtMNp~iV  299 (528)
T TIGR02518       229 KKAVRKILDSKTFDNGTICASEQSVIVEKCN-KD-AVVEELKKQGGYFLTEEEAEKLGKFILRPNGTMNPQIV  299 (528)
T ss_pred             HHHHHHHHCCCCCCCCEEEEECCCEEEECCC-HH-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             8999887402566776165313506861577-26-89999985242234778887664321268786076324


No 75 
>PHA02131 hypothetical protein
Probab=46.91  E-value=20  Score=15.80  Aligned_cols=48  Identities=13%  Similarity=0.238  Sum_probs=32.3

Q ss_pred             ECCCEEEEEEEEEEEECCCCEECC--EEEEEECCEEEEEECCCHHHHHHHHHH
Q ss_conf             147341899970033035402268--699997889999985437999998864
Q gi|255764478|r  264 HARRVEGYATSTKPLVYQGMLIEN--IRVRFDQGRVVEASASKGEEMLNKILD  314 (418)
Q Consensus       264 ~~~~vnG~i~~d~p~~~~G~~~~~--~~l~f~~G~vv~~~a~~~~~~l~~~l~  314 (418)
                      +-..|||+-.+|.-   .|--..+  -++-|++|+|++++-......++++-.
T Consensus         8 hiakvngitkvdmi---rgh~~~g~~c~imfk~~~v~dctfk~dtaqfr~mek   57 (70)
T PHA02131          8 HIAKVNGITKVDMI---RGHYRFGISCWIMFKNDQVIDCTFKNDTAQFRSMEK   57 (70)
T ss_pred             HHHHHCCCEEEEEE---CCCEECCEEEEEEECCCCEEEEEECCCHHHHHHHHH
T ss_conf             75542682577776---130005548999973897887056375898852999


No 76 
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=45.97  E-value=21  Score=15.70  Aligned_cols=57  Identities=26%  Similarity=0.485  Sum_probs=37.1

Q ss_pred             EEEEEEEEE-EEECCCC---EECCEEEEEECCEEEEEECCCHH------HHHHHHHHCCCCCCEEEE
Q ss_conf             418999700-3303540---22686999978899999854379------999988642898526879
Q gi|255764478|r  268 VEGYATSTK-PLVYQGM---LIENIRVRFDQGRVVEASASKGE------EMLNKILDIDEGARRLGE  324 (418)
Q Consensus       268 vnG~i~~d~-p~~~~G~---~~~~~~l~f~~G~vv~~~a~~~~------~~l~~~l~~d~~a~~igE  324 (418)
                      .+|.|.++. ...|.+.   ..+++.|+++.|..+-+-|+.|.      .+|-.+.+.++|.-+++.
T Consensus       337 ~~g~I~~~nVsF~Y~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~idg  403 (581)
T PRK11176        337 AKGDVEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG  403 (581)
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             8860899985784489986201066335799944312289998678999999853667887487898


No 77 
>PRK07656 acyl-CoA synthetase; Validated
Probab=45.63  E-value=21  Score=15.67  Aligned_cols=49  Identities=20%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999873134799769998165358999999999998289886898
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      .+.+++|..|.+  .++++|+.|.|..+...+-++ ++ -++.++||-+|.+.
T Consensus        39 ~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~~~-~~-lA~~~~Gav~vpl~   87 (520)
T PRK07656         39 ARVRRAAAALAA--LGIEKGDRVAIWLPNSPHWVI-AA-LGALKAGAVVVPVN   87 (520)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH-HH-HHHHHHCCEEEEEC
T ss_conf             999999999997--294884999999389899999-99-99998696999758


No 78 
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=45.58  E-value=21  Score=15.66  Aligned_cols=51  Identities=16%  Similarity=0.100  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+-+++|..|.+ .++|++|+.|.|..+... +++.+ .-++.++||-+|.++.
T Consensus        56 ~~a~~lA~~L~~-~lGv~~Gd~Vai~~~ns~-e~v~a-~lA~~k~Gav~vpl~~  106 (559)
T PRK08974         56 ERSRAFAAYLQN-GLGLKKGDRVALMMPNLL-QYPIA-LFGILRAGMIVVNVNP  106 (559)
T ss_pred             HHHHHHHHHHHH-HHCCCCCCEEEEEECCCH-HHHHH-HHHHHHHCCEEEEECC
T ss_conf             999999999987-309899999999948969-99999-9999985929984288


No 79 
>PRK04813 D-alanine--D-alanyl carrier protein ligase; Provisional
Probab=45.40  E-value=21  Score=15.65  Aligned_cols=53  Identities=19%  Similarity=0.099  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      +.+.+++|..|.  .++|++|+.|.|..+...+-++  ++-++.++||-+|.+....
T Consensus        34 ~~~~~~~A~~L~--~~Gv~~gd~V~v~~~n~~e~v~--~~lA~~~~G~v~vpi~~~~   86 (503)
T PRK04813         34 KEDSDALAAFID--SLALPDKSPIIVFGHMSPEMLA--TFLGAVKSGHAYIPVDTSS   86 (503)
T ss_pred             HHHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHHH--HHHHHHHHCCEEEECCCCC
T ss_conf             999999999999--7294883999998489999999--9999998697999518899


No 80 
>KOG2733 consensus
Probab=45.36  E-value=21  Score=15.64  Aligned_cols=66  Identities=17%  Similarity=0.121  Sum_probs=36.6

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHCCCC--CCEEEEECCCCH----HHH-----------------HHHHHHHHHHCCCCCCE
Q ss_conf             4069999999999999987313479--976999816535----899-----------------99999999982898868
Q gi|255764478|r    8 VAHVDEFLLEKLAKVALQVGVNIQE--GQHLIVMAPVSA----LPL-----------------ARLITKHAYMLGAGLVS   64 (418)
Q Consensus         8 ~~~m~~~~L~kyA~llV~~~lniqk--Ge~VlI~~d~~a----~~l-----------------~ral~~aa~~~GA~~V~   64 (418)
                      ++.=|+++|+.-.+-+   +....+  -+.++|++|...    .++                 .++++++|.+.|+++|-
T Consensus        38 vAGRn~~KL~~vL~~~---~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vD  114 (423)
T KOG2733          38 VAGRNEKKLQEVLEKV---GEKTGTDLSSSVILIADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVD  114 (423)
T ss_pred             EECCCHHHHHHHHHHH---HHCCCCCCCCCEEEEECCCCHHHHHHHHHHHEEEEECCCCCEECCCHHHHHHHHCCCCEEC
T ss_conf             7327888999999998---6324888665438994378878999998641787751556312471899999875985331


Q ss_pred             EEECCHHHHHHH
Q ss_conf             987274898997
Q gi|255764478|r   65 VFYKDSEATLML   76 (418)
Q Consensus        65 v~~~d~~~~r~~   76 (418)
                      +.-....++|.-
T Consensus       115 ISGEP~f~E~mq  126 (423)
T KOG2733         115 ISGEPQFMERMQ  126 (423)
T ss_pred             CCCCHHHHHHHH
T ss_conf             478879999998


No 81 
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=44.63  E-value=22  Score=15.57  Aligned_cols=53  Identities=15%  Similarity=0.009  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      .+.+++|..|..  .++++|+.|.|..+-..+-++  ..-++.++||-+|.+.-.+.
T Consensus        54 ~~~~~lA~~L~~--~Gv~~Gd~Vai~~~n~~e~~v--a~la~~k~Gav~vpl~p~~~  106 (541)
T TIGR03205        54 AMAETAAAALLR--AGYGKDASVALYLGNTPDHPI--NFFGALKAGARVVHLSPLDG  106 (541)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEECCCCCC
T ss_conf             999999999997--596998999999289799999--99999985909996488983


No 82 
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=44.35  E-value=22  Score=15.54  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=17.7

Q ss_pred             EECCCC--HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf             981653--589999999999982898868987274898997
Q gi|255764478|r   38 VMAPVS--ALPLARLITKHAYMLGAGLVSVFYKDSEATLML   76 (418)
Q Consensus        38 I~~d~~--a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~   76 (418)
                      |.+++.  +.-++-|.+  |-..|- +..+.+....+.|+.
T Consensus       106 iIAETGAGQHGVAtAta--~A~fgl-~C~iYMGa~Dv~RQ~  143 (396)
T COG0133         106 IIAETGAGQHGVATATA--AALFGL-ECVIYMGAEDVERQA  143 (396)
T ss_pred             EEEECCCCCCCHHHHHH--HHHHCC-CEEEEECCHHHHHCC
T ss_conf             88614887320799999--998299-549994615654405


No 83 
>pfam08553 VID27 VID27 cytoplasmic protein. This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation.
Probab=44.14  E-value=22  Score=15.51  Aligned_cols=169  Identities=17%  Similarity=0.183  Sum_probs=76.0

Q ss_pred             CCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCC-EEEEEE--CCCEEEEEEEE-EEEECCC--CE--------ECCEE
Q ss_conf             96499995588262278860258971468678631-695131--47341899970-0330354--02--------26869
Q gi|255764478|r  224 NTSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTEE-VFTAPH--ARRVEGYATST-KPLVYQG--ML--------IENIR  289 (418)
Q Consensus       224 gTDLt~~l~~~~~w~~~~~~~~~G~~~~~NlP~GE-VftaP~--~~~vnG~i~~d-~p~~~~G--~~--------~~~~~  289 (418)
                      +.-|+|+.+.+|-..-.|.+.  |.  |-+=|... -|.+-+  -.+.+|..... ++|.|+.  .+        -.=.+
T Consensus       427 Ns~LaVGyK~DRSfVvRG~kI--GV--Fk~t~d~~l~F~T~I~~v~t~~Gk~f~P~k~MLh~qD~~mil~~~~~~n~lYk  502 (788)
T pfam08553       427 NSSLAVGYKNDRSYVVRGDKI--GV--FKHTDDDSLEFVTAINNVSDPKGKSFSPHKMMLHNEDRNMILQDPSNKNKLYK  502 (788)
T ss_pred             CCEEEEEECCCCEEEEECCCE--EE--EECCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCHHHHCCCCCCCCCEEE
T ss_conf             624788872671499867815--56--63179985178662023558898665865102222120320038999884178


Q ss_pred             EEEECCEEEEE-ECCCHHHHHHHHHHCCCCCCEEEE-EEEECCCCCHHHH-CCCCCCEEEECC----------------C
Q ss_conf             99978899999-854379999988642898526879-9986686200110-120033232057----------------5
Q gi|255764478|r  290 VRFDQGRVVEA-SASKGEEMLNKILDIDEGARRLGE-VALVPHSSLLSKM-NTLFYDTLFDEN----------------A  350 (418)
Q Consensus       290 l~f~~G~vv~~-~a~~~~~~l~~~l~~d~~a~~igE-~~ig~n~~~i~~~-~~l~~n~L~DEk----------------~  350 (418)
                      +-.+-|+||+- .....- -+..+.-.-..+..-+| -=+|.+..++.++ -++.+|.|.|..                .
T Consensus       503 MDle~gkvV~EW~~~d~~-~v~~~~p~~Kf~q~t~eqtf~G~s~n~lfriDPRl~g~Klv~~~~k~Y~skn~Fs~~aTt~  581 (788)
T pfam08553       503 MDLEYGKVVDEWKVSDDV-PVVQYAPTKKFAQMTAEQTFLGISHNGVFRIDPRLSGNKLVDSESKQYASKNDFSALATTE  581 (788)
T ss_pred             EECCCCCEEEEEECCCCC-CEEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCCEEEECC
T ss_conf             654678677882237887-5047247654101457652675547724887775578703403000114466542477448


Q ss_pred             CCCEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCCCEEE
Q ss_conf             26412267750003676678834432069850124587996788199999817995999
Q gi|255764478|r  351 ASHIAFGQCYSKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVP  409 (418)
Q Consensus       351 ~~H~A~G~~y~~~~~~~~~~~~~~~~~~g~n~S~~H~D~~~~~~~i~vdgi~~dG~~~~  409 (418)
                      .||||+|.+-.     ..-+    ....|.| +-+|+-. +|.|=|-|| +++||++++
T Consensus       582 ~G~iAv~S~kG-----diRL----fDrlg~~-AKT~lp~-lGdpIigid-vs~DGrwil  628 (788)
T pfam08553       582 KGYIAVASNKG-----DIRL----FDRLGIN-AKTAIPA-LGDPIIGID-VSADGRWLL  628 (788)
T ss_pred             CCEEEEEECCC-----CEEE----ECCCCCH-HHHCCCC-CCCCEEEEE-ECCCCCEEE
T ss_conf             85499850688-----4686----4324730-1003877-799636567-547881899


No 84 
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase; InterPro: IPR001160   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This majority of this group of proteins are aminoacyl-histidine dipeptidases (3.4.13.3 from EC, Xaa-His dipeptidases), which are zinc-containing metallopeptidases that belong to MEROPS peptidase family M20 (clan MH), subfamily M20C . Proteins of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His , . The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide..    The X-His dipeptidases cleave Xaa-His dipeptides (where Xaa is any hydrophobic residue). The amino acid sequence deduced from Escherichia coli reveals that peptidase D is a slightly hydrophilic protein of 485 residues that contains no extended domains of marked hydrophobicity .   Also contained within this family of proteins are acetylornithine deactylases which belong to MEROPS peptidase family M20, subfamily M20A non-peptidase homologues. ; GO: 0008769 X-His dipeptidase activity, 0006508 proteolysis.
Probab=44.11  E-value=7.5  Score=18.81  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=47.5

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCC-CEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             4266597999999999999999973016847999976996499995588-262278860258971468678631695131
Q gi|255764478|r  186 RAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEG-HRWSGGSSIAQNGIMCNPNIPTEEVFTAPH  264 (418)
Q Consensus       186 ~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~-~~w~~~~~~~~~G~~~~~NlP~GEVftaP~  264 (418)
                      .++.+|--..|+.++..+..+++-        .+...++-+|.++-.+. -++...|++..+.     ..|+-+||+.=-
T Consensus       272 a~~~~d~~~~~~~v~~~~~~~K~~--------Y~~~~~~~~~~~~~~E~~iifeasGGkitrk-----ev~~~~v~s~~~  338 (506)
T TIGR01893       272 AIDEEDVKKLEELVKNFQSKFKKE--------YSELEPNITLEVSKEENSIIFEASGGKITRK-----EVKSEKVFSEET  338 (506)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHH--------HHHCCCCCEEEEEEECCEEEEECCCCEEEEE-----CCCCCCCCCHHH
T ss_conf             981520899999988899987666--------5311888318998632617884378723310-----047654474257


Q ss_pred             CCC--------EEEEEEEEEEEECCCCEE--CC-EEEEEECCEEEEEEC
Q ss_conf             473--------418999700330354022--68-699997889999985
Q gi|255764478|r  265 ARR--------VEGYATSTKPLVYQGMLI--EN-IRVRFDQGRVVEASA  302 (418)
Q Consensus       265 ~~~--------vnG~i~~d~p~~~~G~~~--~~-~~l~f~~G~vv~~~a  302 (418)
                      .++        .||+-....  .+.|.+.  .+ =.++.++++|+-+.-
T Consensus       339 ~~k~i~~~~~~p~GV~~~~~--~~~~~VeSS~NL~~~~~~~~~~~~~~~  385 (506)
T TIGR01893       339 TEKLINALNLLPNGVQRVSD--ELPGLVESSLNLAVVKTKENKVIVVFL  385 (506)
T ss_pred             HHHHHHHHHHCCCCCCHHHH--CCCCEEEEECCEEEEEEECCEEEEEEE
T ss_conf             89999999735898310553--059826630443889984767999988


No 85 
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=43.97  E-value=22  Score=15.50  Aligned_cols=53  Identities=15%  Similarity=0.001  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      ..+.+++|..|..  .++++|+.|.|..+...+ ++. ++-++.++||-+|.++...
T Consensus        35 ~~~~~~~A~~L~~--~Gv~~Gd~V~l~~~n~~e-~v~-~~lA~~~~Gav~vpl~~~~   87 (458)
T PRK09029         35 CARIDELAAGFQQ--QGVVEGSGVALRGKNSPE-TLL-AYLALLQCGARVLPLNPQL   87 (458)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHH-HHHHHHHHCCEEEEECCCC
T ss_conf             9999999999997--495986999999289799-999-9999998696999978878


No 86 
>PRK07008 acyl-CoA synthetase; Validated
Probab=43.36  E-value=23  Score=15.43  Aligned_cols=51  Identities=12%  Similarity=-0.042  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|..  ++|++||.|.|..+...+ ++.+ +-++.++||-+|.+...
T Consensus        47 ~~~~~lA~~L~~--~Gv~~GdrVai~~~n~~e-~~~~-~~a~~~~Gav~vpl~~~   97 (539)
T PRK07008         47 RRARQLAQALAA--LGVEPGDRVGTLAWNGYR-HLEA-YYGVSGSGAVCHTINPR   97 (539)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHH-HHHHHHHCEEEEEECCC
T ss_conf             999999999997--696886999998788799-9999-99999849699844899


No 87 
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.09  E-value=23  Score=15.41  Aligned_cols=32  Identities=9%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             EEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECCCHH
Q ss_conf             418999700330354022686999978899999854379
Q gi|255764478|r  268 VEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGE  306 (418)
Q Consensus       268 vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~  306 (418)
                      |||+++-.-       .-.++.|.+|+|.+|++.|+.-.
T Consensus       175 VnGIvVGkA-------~S~~V~LVaEnG~lt~i~GG~IK  206 (367)
T COG4069         175 VNGIVVGKA-------TSSEVELVAENGFLTDIEGGRIK  206 (367)
T ss_pred             EEEEEEEEE-------CCCCEEEEEECCEEEEEECCEEC
T ss_conf             941798665-------15746999618679987555544


No 88 
>PRK13390 acyl-CoA synthetase; Provisional
Probab=43.05  E-value=23  Score=15.40  Aligned_cols=52  Identities=15%  Similarity=0.142  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      ..+.+++|..|.+  .+|++||.|.|..+...+-++  +.-++.++||-+|.+...
T Consensus        31 ~~~~~~lA~~L~~--~Gv~~Gd~Vai~~~n~~e~v~--~~lA~~~~Gav~vpl~~~   82 (501)
T PRK13390         31 DDDSAALARVLYD--AGLRTGDVVALLSDNSPEALV--VLWAALRSGLYITAINHH   82 (501)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEEECCC
T ss_conf             9999999999997--495998999999189799999--999999859599806898


No 89 
>PRK13391 acyl-CoA synthetase; Provisional
Probab=42.87  E-value=23  Score=15.39  Aligned_cols=51  Identities=16%  Similarity=0.029  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|..  ++|+|||.|.|..+...+-+  ++.-++.++||-+|.+.-.
T Consensus        32 ~~~~~~A~~L~~--~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Gav~vpl~~~   82 (514)
T PRK13391         32 ARSNRLAHLFRS--HGLRRGDHVAIFMENNLRYL--EACWAAERSGLYYTCVNSY   82 (514)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCEEEEEECCC
T ss_conf             999999999997--59599899999948979999--9999999859099956899


No 90 
>PRK13383 acyl-CoA synthetase; Provisional
Probab=42.71  E-value=23  Score=15.37  Aligned_cols=53  Identities=19%  Similarity=0.110  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      +.+-+++|..|..  .+|++|+.|.|..+...+-++  ..-++.++||-+|.+....
T Consensus        67 ~~~a~~lA~~L~~--~Gv~~GdrVav~~~ns~e~v~--a~lAi~k~Gav~vPl~~~~  119 (516)
T PRK13383         67 QRATESLARRLTR--DGVAPGRAVGVMCRNGRGFVT--AVFAVGLLGADVVPISTEF  119 (516)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECCCC
T ss_conf             9999999999997--596895999999088299999--9999998691999578889


No 91 
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=42.56  E-value=23  Score=15.35  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.2

Q ss_pred             EEEECCEEEEEECCCHHHHHHHHH
Q ss_conf             999788999998543799999886
Q gi|255764478|r  290 VRFDQGRVVEASASKGEEMLNKIL  313 (418)
Q Consensus       290 l~f~~G~vv~~~a~~~~~~l~~~l  313 (418)
                      ..|++|+++++.|...++.|-++|
T Consensus        92 yvfk~~~~IEydG~~sadtLVeFL  115 (120)
T cd03065          92 YVFKDDEVIEYDGEFAADTLVEFL  115 (120)
T ss_pred             EEEECCCEEEECCEECHHHHHHHH
T ss_conf             998689388664713758999999


No 92 
>pfam11006 DUF2845 Protein of unknown function (DUF2845). This bacterial family of proteins has no known function.
Probab=42.39  E-value=23  Score=15.34  Aligned_cols=15  Identities=27%  Similarity=0.674  Sum_probs=12.9

Q ss_pred             EEEEECCEEEEEECC
Q ss_conf             999978899999854
Q gi|255764478|r  289 RVRFDQGRVVEASAS  303 (418)
Q Consensus       289 ~l~f~~G~vv~~~a~  303 (418)
                      .|+|++|+|++++-.
T Consensus        70 ~l~fe~Gkl~~Ie~~   84 (85)
T pfam11006        70 ILRFENGKLVRIESG   84 (85)
T ss_pred             EEEEECCEEEEEEEC
T ss_conf             999989999997728


No 93 
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=42.35  E-value=23  Score=15.33  Aligned_cols=31  Identities=19%  Similarity=0.378  Sum_probs=18.6

Q ss_pred             HCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             1347997699981653589999999999982898
Q gi|255764478|r   28 VNIQEGQHLIVMAPVSALPLARLITKHAYMLGAG   61 (418)
Q Consensus        28 lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~   61 (418)
                      .++|+|++|+|...   =++.......|..+||.
T Consensus       162 ~~v~~g~~V~V~G~---G~iGl~a~~~ak~~Ga~  192 (349)
T TIGR03201       162 AGLKKGDLVIVIGA---GGVGGYMVQTAKAMGAA  192 (349)
T ss_pred             CCCCCCCEEEEECC---CHHHHHHHHHHHHCCCE
T ss_conf             17899988999897---48999999999985997


No 94 
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=42.30  E-value=24  Score=15.33  Aligned_cols=57  Identities=19%  Similarity=0.358  Sum_probs=42.2

Q ss_pred             EEEECCCEEEEE-----EEEEEEECCCCEECCEEEEEECCEEEEEECCCH------HHHHHHHHHCCCCC
Q ss_conf             513147341899-----970033035402268699997889999985437------99999886428985
Q gi|255764478|r  261 TAPHARRVEGYA-----TSTKPLVYQGMLIENIRVRFDQGRVVEASASKG------EEMLNKILDIDEGA  319 (418)
Q Consensus       261 taP~~~~vnG~i-----~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~------~~~l~~~l~~d~~a  319 (418)
                      -+|  ..++|.|     .|++|.-+.-.+-+|++++++=|++|-.=|+.|      ..+|.++.+-+.|.
T Consensus       522 ~~P--~~~~G~ieF~dVsFsYP~RP~~pvLk~LtFt~~PG~vvALVGPsGsGKStvaaLL~n~Y~Pt~G~  589 (770)
T TIGR00958       522 LAP--KNLEGKIEFQDVSFSYPNRPDVPVLKGLTFTLEPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ  589 (770)
T ss_pred             CCC--CCCEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf             145--76322588753223178988976112774365386259986589983999999998557898656


No 95 
>PRK05677 acyl-CoA synthetase; Validated
Probab=42.20  E-value=24  Score=15.32  Aligned_cols=50  Identities=18%  Similarity=0.081  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999873134799769998165358999999999998289886898
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      .+.+++|..|.+ -++|++||.|.|..+...+ ++. ..-++.++||-+|.++
T Consensus        57 ~~~~~lA~~L~~-~~Gv~~GDrVai~~~n~~e-~v~-a~la~~~~Gav~vpln  106 (562)
T PRK05677         57 KLSGAFAAWLQQ-HTDLKPGDRIAVQLPNVLQ-YPI-AVFGAMRAGLIVVNTN  106 (562)
T ss_pred             HHHHHHHHHHHH-HHCCCCCCEEEEEECCCHH-HHH-HHHHHHHHCEEEEECC
T ss_conf             999999999887-0298999999999289599-999-9999998495998229


No 96 
>TIGR02619 TIGR02619 putative CRISPR-associated protein, APE2256 family; InterPro: IPR013442    This entry represents a conserved region of about 150 amino acids found in at least five archaeal and three bacterial species. These species all contain CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus..
Probab=42.08  E-value=24  Score=15.30  Aligned_cols=38  Identities=24%  Similarity=0.123  Sum_probs=17.9

Q ss_pred             HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             31347997699981653589999999999982898868
Q gi|255764478|r   27 GVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVS   64 (418)
Q Consensus        27 ~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~   64 (418)
                      .+.-..|..+++.++-.-+|=+-.+.-+++.+||.||+
T Consensus        99 ~~~~~~r~v~~~~~TGGFKpea~~l~~~asl~GA~~vf  136 (151)
T TIGR02619        99 KVAESERNVVLLAATGGFKPEAAVLVLVASLAGALPVF  136 (151)
T ss_pred             HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             64215887688885999858899999999985346534


No 97 
>PRK07788 acyl-CoA synthetase; Validated
Probab=41.81  E-value=24  Score=15.28  Aligned_cols=53  Identities=19%  Similarity=0.083  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      +.+-+++|.-|..  .+|++|+.|.|..+...+ ++.+ +-++.++||-+|.++...
T Consensus        85 ~~~a~~lA~~L~~--~Gv~~GdrVai~~~ns~e-~v~a-~lA~~k~Gav~vpl~~~~  137 (552)
T PRK07788         85 DEASHALARGLLA--KGVRAGDGVAVLARNHRG-FVIA-LYAAGKLGARIILLNTGF  137 (552)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCCEEEEECCCC
T ss_conf             9999999999997--695999999999088099-9999-999998491999678999


No 98 
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=41.54  E-value=24  Score=15.25  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=30.2

Q ss_pred             CCCCCEEEEECCC-----------CHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             4799769998165-----------358999999999998289886898
Q gi|255764478|r   30 IQEGQHLIVMAPV-----------SALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        30 iqkGe~VlI~~d~-----------~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      +++|+.|+|.-..           ..-++++|+++.+.++|++|++..
T Consensus        34 i~~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g~ep~vgd   81 (293)
T COG2006          34 ISPGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAGGEPVVGD   81 (293)
T ss_pred             CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf             678988886575346799978775698999999999998089606851


No 99 
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=40.72  E-value=25  Score=15.16  Aligned_cols=29  Identities=17%  Similarity=0.467  Sum_probs=24.6

Q ss_pred             EEEEEECCCEEEEEEEECCCCEEEEEECCEE
Q ss_conf             5879967881999998179959998867845
Q gi|255764478|r  386 HIDWMIGSGDMNVDGLTKNGVLVPIMRGGEW  416 (418)
Q Consensus       386 H~D~~~~~~~i~vdgi~~dG~~~~i~~~G~~  416 (418)
                      -=|+++-.+++.|..+..+|+.  +++||+.
T Consensus       349 dADlvi~D~d~~v~~v~~~G~~--v~~~g~~  377 (384)
T PRK10657        349 DADLLVLDDDLEIEQVIAKGKL--MVKDGKA  377 (384)
T ss_pred             CCCEEEECCCCCEEEEEECCEE--EEECCEE
T ss_conf             4408999899996489988799--9999999


No 100
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764    Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes.  AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate  ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=40.71  E-value=25  Score=15.16  Aligned_cols=20  Identities=10%  Similarity=0.004  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999987313479
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQE   32 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqk   32 (418)
                      .+..+..-+.++.+..+.++
T Consensus        28 ~~~f~~~id~l~~~~~~~~~   47 (175)
T TIGR01090        28 PELFRFLIDLLVERYKDANG   47 (175)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
T ss_conf             77899999999999986079


No 101
>TIGR01038 L22_arch ribosomal protein L22; InterPro: IPR005721   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=40.38  E-value=17  Score=16.39  Aligned_cols=14  Identities=21%  Similarity=0.425  Sum_probs=10.7

Q ss_pred             CCCCEEEEECCCHH
Q ss_conf             88735999659989
Q gi|255764478|r  146 FDINWSIVPFPSCA  159 (418)
Q Consensus       146 ~~~~W~i~~~Pt~a  159 (418)
                      .+..|.-.+||..+
T Consensus        72 k~~Gw~~GRYP~Ka   85 (151)
T TIGR01038        72 KKWGWTAGRYPVKA   85 (151)
T ss_pred             CCCCCCCCCCCHHH
T ss_conf             20577788860789


No 102
>PRK08308 acyl-CoA synthetase; Validated
Probab=40.28  E-value=25  Score=15.12  Aligned_cols=104  Identities=12%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH-HCCCHHH--HHHCC
Q ss_conf             99999999999987313479976999816535899999999999828988689872748989976-0598789--86243
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLY-KYGADYA--FDRVA   89 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~-~~a~~e~--l~~~p   89 (418)
                      +.+.+++|.++ +  .++++|+.|.|..+-.. +++.+ .-++.++||-+|.+.-..+.-..... +.+.-..  .+..+
T Consensus        15 ~~~~~~~A~~l-~--~~~~~GdrVal~~~~s~-e~v~~-~lAi~~~Ga~~vPl~p~~p~~~~~~i~~~~~~~~ll~~~~~   89 (413)
T PRK08308         15 DLRLQRYEEME-Q--FQEAAGNRFALCLKDPF-DIITL-VFFLKEKGASVLPIHPSTPKAAAIRLAKRAGCHGLLYGENS   89 (413)
T ss_pred             HHHHHHHHHHH-H--HCCCCCCEEEEEECCHH-HHHHH-HHHHHHHCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             99999999999-8--58999498999979829-99999-99999868099961868819999999986698399967987


Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCHHHCCCC
Q ss_conf             36799999998479789998159732430799
Q gi|255764478|r   90 DWFCEGLAKAYSDNTALLSISGDNPLLLVNED  121 (418)
Q Consensus        90 ~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd  121 (418)
                      +..............++|..+|-.+-.-|++-
T Consensus        90 ~~~~~~~~~~~~~~pa~i~yTSGTTG~PKgV~  121 (413)
T PRK08308         90 DFTKLEAVNTLAEEPSLLQYSSGTTGEPKLIR  121 (413)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEE
T ss_conf             52114667778999869998956334373499


No 103
>pfam02144 Rad1 Repair protein Rad1/Rec1/Rad17.
Probab=40.17  E-value=24  Score=15.21  Aligned_cols=19  Identities=21%  Similarity=0.378  Sum_probs=13.9

Q ss_pred             EEEEEEECCCCEEEEEECC
Q ss_conf             4799997699649999558
Q gi|255764478|r  215 FAEIRFSGPNTSLKVGLAE  233 (418)
Q Consensus       215 ~~~i~~~~~gTDLt~~l~~  233 (418)
                      ..++.|.++|.-|.+-+.+
T Consensus        95 s~~l~Y~g~G~Pl~l~lee  113 (250)
T pfam02144        95 SCRLSYKGEGSPLVLILEE  113 (250)
T ss_pred             EEEEEECCCCCCEEEEEEE
T ss_conf             8999985899968999993


No 104
>KOG1201 consensus
Probab=40.01  E-value=25  Score=15.09  Aligned_cols=53  Identities=26%  Similarity=0.230  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf             9999999987313479976999816535899999999999828988689872748
Q gi|255764478|r   17 EKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE   71 (418)
Q Consensus        17 ~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~   71 (418)
                      .....+++..-..--+||.|||+..-.-  |.|++..+..++||+.|...++...
T Consensus        22 ~s~~~~~l~~~~k~v~g~~vLITGgg~G--lGr~ialefa~rg~~~vl~Din~~~   74 (300)
T KOG1201          22 ESLIKLLLPKPLKSVSGEIVLITGGGSG--LGRLIALEFAKRGAKLVLWDINKQG   74 (300)
T ss_pred             HHHHHHHCCCCHHHCCCCEEEEECCCCH--HHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf             9999875554334406988999689860--7899999999707848999556512


No 105
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=39.61  E-value=26  Score=15.05  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=23.2

Q ss_pred             HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             31347997699981653589999999999982898868987
Q gi|255764478|r   27 GVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        27 ~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      ..++++||+|||......  +..+...-|...||+ |+..-
T Consensus        99 ~~~i~~g~~VlI~gg~G~--vG~~aiqlak~~Ga~-Vi~t~  136 (288)
T smart00829       99 LARLRPGESVLIHAAAGG--VGQAAIQLAQHLGAE-VFATA  136 (288)
T ss_pred             HCCCCCCCEEEEECCCCH--HHHHHHHHHHHCCCC-EEEEE
T ss_conf             508899999999789867--779999999973983-00340


No 106
>PRK07684 consensus
Probab=39.59  E-value=26  Score=15.05  Aligned_cols=53  Identities=13%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      .+.+++|..|..  .+|++|+.|.|..+...+ ++.+ .-++.++||-+|.+....+
T Consensus        36 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~ns~e-~v~~-~lA~~~~Gav~vpl~~~~~   88 (516)
T PRK07684         36 EQVNKTAHALLE--EGVRKGDTVSVYLYNCRE-FVNV-YLACAKIGAIFNPINFRLK   88 (516)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCEEEEEECCCCC
T ss_conf             999999999997--695987999999489699-9999-9999984909963189999


No 107
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=39.08  E-value=26  Score=14.99  Aligned_cols=46  Identities=15%  Similarity=0.127  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999987313479976999816535899999999999828988
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGL   62 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~   62 (418)
                      +.+.+++|..|.  .++|+|||.|.|..+-..+-++  ..-++.++||-+
T Consensus       123 ~~~v~rlA~~L~--~~GV~~GDrVai~lpn~~E~vv--a~LA~~k~GAv~  168 (652)
T PRK03584        123 RRQVAALAQALR--ALGVGPGDRVAAYLPNIPETVV--AMLATASLGAIW  168 (652)
T ss_pred             HHHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHHH--HHHHHHHCCCEE
T ss_conf             999999999999--7598999999998789899999--999999639288


No 108
>TIGR01344 malate_syn_A malate synthase A; InterPro: IPR006252   These sequences represent plant malate synthase and one of two bacterial forms, designated malate synthase A. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle.
Probab=39.06  E-value=19  Score=15.99  Aligned_cols=18  Identities=22%  Similarity=0.340  Sum_probs=11.6

Q ss_pred             CCCHHHHHHHHHHHHHHH
Q ss_conf             699999999999999873
Q gi|255764478|r   10 HVDEFLLEKLAKVALQVG   27 (418)
Q Consensus        10 ~m~~~~L~kyA~llV~~~   27 (418)
                      +|+.+.|+.|.++||++|
T Consensus       287 TM~kpFl~AYs~lLI~TC  304 (522)
T TIGR01344       287 TMDKPFLNAYSKLLIQTC  304 (522)
T ss_pred             ECCCHHHHHHHHHHHHHC
T ss_conf             548476889999997401


No 109
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=39.06  E-value=26  Score=14.99  Aligned_cols=39  Identities=21%  Similarity=0.172  Sum_probs=28.4

Q ss_pred             HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             31347997699981653589999999999982898868987274
Q gi|255764478|r   27 GVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        27 ~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      .+.+.+|+.|++.+-+-     -+.+..+...||+||++.+..+
T Consensus        68 al~ig~GDeVI~ps~Tf-----vATan~i~~~Ga~PVFvDid~~  106 (374)
T COG0399          68 ALAIGPGDEVIVPSFTF-----VATANAVLLVGAKPVFVDIDPD  106 (374)
T ss_pred             HCCCCCCCEEEECCCCH-----HHHHHHHHHCCCEEEEEECCCC
T ss_conf             64879999799368753-----9889999976996799964764


No 110
>PRK12492 acyl-CoA synthetase; Provisional
Probab=38.77  E-value=27  Score=14.96  Aligned_cols=51  Identities=16%  Similarity=-0.009  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+-+++|..|... ++|++|+.|.|..+-..+-++  ..-++.++||-+|.++.
T Consensus        57 ~~s~~lA~~L~~~-~Gv~~GDrVai~~~ns~e~v~--~~la~~k~Gav~vplnp  107 (562)
T PRK12492         57 RHSAAFAAYLQQH-TDLVPGDRIAVQMPNVLQYPI--AVFGALRAGLIVVNTNP  107 (562)
T ss_pred             HHHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHH--HHHHHHHHCEEEEECCC
T ss_conf             9999999999880-098999999999389799999--99999984919980098


No 111
>PRK06188 acyl-CoA synthetase; Validated
Probab=38.62  E-value=27  Score=14.95  Aligned_cols=50  Identities=8%  Similarity=0.059  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+.+++|..|.+  ++|++|+.|.|..+...+ ++.+ .-++.++||-+|.+..
T Consensus        43 ~~~~~lA~~L~~--~Gv~~Gd~V~i~~~n~~e-~v~~-~lA~~~~Gav~vpl~~   92 (522)
T PRK06188         43 DRISQYIQAFEA--LGLGRGDAVALLSLNRPE-VLMA-IGAAQLLGLRRTALHP   92 (522)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCEEEEEECC
T ss_conf             999999999997--494987999999189699-9999-9999985959997689


No 112
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=38.47  E-value=27  Score=14.93  Aligned_cols=50  Identities=20%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             CHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf             015540699999999999999873134799769998165358999999999998289
Q gi|255764478|r    4 SISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA   60 (418)
Q Consensus         4 ~~~~~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA   60 (418)
                      =..+...++++.+++.++++.+-      + +|.+..--...-.++.+.......|-
T Consensus        11 i~~t~~~ld~~~i~~~~~~I~~a------~-~I~~~G~G~Sg~va~~~a~rl~~lG~   60 (179)
T cd05005          11 IENVADKIDEEELDKLISAILNA------K-RIFVYGAGRSGLVAKAFAMRLMHLGL   60 (179)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHCC------C-CEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf             99999976999999999999749------9-48999856258779999999973598


No 113
>PRK12476 acyl-CoA synthetase; Provisional
Probab=38.07  E-value=27  Score=14.89  Aligned_cols=48  Identities=19%  Similarity=0.162  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             99999999999987313479976999816535899999999999828988689
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSV   65 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v   65 (418)
                      +.+.+++|..| +.+  ++|||.|.|..+-. .+++.++. ++.++||-+|.+
T Consensus        75 ~~ra~~lA~~L-~~~--v~~GDrVal~~~~s-~e~vva~l-ailkaGav~VPl  122 (612)
T PRK12476         75 GVRLRAVGARL-QQV--TGRGDRVAILAPQG-LDYVAGFF-AAIKAGTIAVPL  122 (612)
T ss_pred             HHHHHHHHHHH-HHC--CCCCCEEEEECCCC-HHHHHHHH-HHHHHCEEEEEC
T ss_conf             99999999999-857--99999999987895-99999999-999979399831


No 114
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=37.92  E-value=27  Score=14.87  Aligned_cols=27  Identities=19%  Similarity=0.259  Sum_probs=14.2

Q ss_pred             CCHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf             4379999988642898526879998668
Q gi|255764478|r  303 SKGEEMLNKILDIDEGARRLGEVALVPH  330 (418)
Q Consensus       303 ~~~~~~l~~~l~~d~~a~~igE~~ig~n  330 (418)
                      +.....+.++++. -|+.-+|=..++-.
T Consensus       129 GgT~~a~~~Ll~~-~ga~vvg~~~~ie~  155 (179)
T COG0503         129 GGTALALIELLEQ-AGAEVVGAAFVIEL  155 (179)
T ss_pred             CHHHHHHHHHHHH-CCCEEEEEEEEEEE
T ss_conf             6789999999998-89989999999972


No 115
>PRK05850 acyl-CoA synthetase; Validated
Probab=37.82  E-value=27  Score=14.86  Aligned_cols=49  Identities=16%  Similarity=0.077  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             999999999999873134799769998165358999999999998289886898
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      +.+.+++|..|...|   ++||.|.|..+... +++.+ .-++.++||-+|.+.
T Consensus        45 ~~~a~~lA~~L~~~G---~~GDrVai~~~n~~-e~vva-~lA~~~aGav~VPl~   93 (581)
T PRK05850         45 YRRTLNVAEELRRHG---STGDRAVILAPQGL-EYIVA-FLGALQAGLIAVPLS   93 (581)
T ss_pred             HHHHHHHHHHHHHCC---CCCCEEEEEECCCH-HHHHH-HHHHHHHCEEEEECC
T ss_conf             999999999999769---99898999958989-99999-999998596997248


No 116
>PRK10646 putative ATPase; Provisional
Probab=37.67  E-value=28  Score=14.85  Aligned_cols=44  Identities=11%  Similarity=0.065  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHHHHHHHH
Q ss_conf             069999999999999987313479976999816535--89999999999
Q gi|255764478|r    9 AHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSA--LPLARLITKHA   55 (418)
Q Consensus         9 ~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a--~~l~ral~~aa   55 (418)
                      +-=|+..-.++|+.+-+   .+++|+.|++..+..+  .-|+|.+.++.
T Consensus         7 ~L~de~~T~~lg~~la~---~l~~g~vi~L~G~LGaGKTtf~r~i~~~l   52 (153)
T PRK10646          7 PLPDEQATLDLGERVAK---ACDGATVIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             ECCCHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             89899999999999997---68999799998888789999999999984


No 117
>PRK08452 flagellar protein FlaG; Provisional
Probab=37.49  E-value=14  Score=16.85  Aligned_cols=32  Identities=13%  Similarity=0.251  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECC
Q ss_conf             99999999999997301684799997699649999558
Q gi|255764478|r  196 WAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAE  233 (418)
Q Consensus       196 w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~  233 (418)
                      =++..++++.+++.||..    +  ..-+|+|.|++.+
T Consensus        50 ~e~~kekL~eiv~~LNe~----M--~~l~t~L~Fs~de   81 (126)
T PRK08452         50 NEQLKKKLEDLTEKLNEE----M--KRLDTNIRFGYND   81 (126)
T ss_pred             HHHHHHHHHHHHHHHHHH----H--HHHCCCCEEEEEC
T ss_conf             799999999999999999----9--8707885267606


No 118
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=37.39  E-value=28  Score=14.82  Aligned_cols=47  Identities=13%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             EEEEEEEEE-EEEC----CCCEECCEEEEEECCEEEEEECCCHH------HHHHHHHH
Q ss_conf             418999700-3303----54022686999978899999854379------99998864
Q gi|255764478|r  268 VEGYATSTK-PLVY----QGMLIENIRVRFDQGRVVEASASKGE------EMLNKILD  314 (418)
Q Consensus       268 vnG~i~~d~-p~~~----~G~~~~~~~l~f~~G~vv~~~a~~~~------~~l~~~l~  314 (418)
                      +.|.|.|.. .+.|    .-.+-+++.|+++.|.-|-+=|..|.      .+|.++.+
T Consensus      1163 ~~G~Ief~nV~F~Ypsrp~~pVLk~lsf~I~~GqkVaiVGrSGsGKSTii~lL~Rfyd 1220 (1467)
T PTZ00265       1163 IKGKIDIKDVNFRYISRPNVPIYKDLSFSCDSKKTTAIVGETGSGKSTFMNLLLRFYD 1220 (1467)
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             8870899989998289995920188459977998899989999839999999997763


No 119
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=37.37  E-value=28  Score=14.81  Aligned_cols=13  Identities=0%  Similarity=0.194  Sum_probs=7.0

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999999730168
Q gi|255764478|r  202 FLHQKSQWLSQRD  214 (418)
Q Consensus       202 ~~~~~~~~Ln~~~  214 (418)
                      .++++++.+-.++
T Consensus       297 ~I~~lA~~~a~~~  309 (609)
T cd02769         297 TIRELARRFASKR  309 (609)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998369


No 120
>pfam11525 CopK Copper resistance protein K. CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site.
Probab=37.23  E-value=23  Score=15.45  Aligned_cols=29  Identities=14%  Similarity=0.220  Sum_probs=12.2

Q ss_pred             CCEEEEEECCEEEEEECCCHHHHHHHHHHC
Q ss_conf             686999978899999854379999988642
Q gi|255764478|r  286 ENIRVRFDQGRVVEASASKGEEMLNKILDI  315 (418)
Q Consensus       286 ~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~  315 (418)
                      .+-.++-+||+-+-.++.+-+. |.++|..
T Consensus        40 ~g~~meT~DG~kI~m~gdEVaR-L~~~l~k   68 (73)
T pfam11525        40 EGMVMETTDGQKIMMHGDEVAR-LDNYLRK   68 (73)
T ss_pred             CCCEEEECCCCEEEECCHHHHH-HHHHHHC
T ss_conf             9837880589678861507776-8899861


No 121
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293   The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase.    A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=36.70  E-value=20  Score=15.82  Aligned_cols=191  Identities=17%  Similarity=0.151  Sum_probs=101.8

Q ss_pred             HHHCCCHHHHHHCCHHHHHHHHHHHHC-CCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEE
Q ss_conf             760598789862433679999999847-978999815973243079988999888988999899999984588735-999
Q gi|255764478|r   76 LYKYGADYAFDRVADWFCEGLAKAYSD-NTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINW-SIV  153 (418)
Q Consensus        76 ~~~~a~~e~l~~~p~~~~~~~~~~~~~-~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W-~i~  153 (418)
                      .+.|-.+|-|..      ..+.+++++ ..+.++|-          .+=.|+-|-+-+++..+..-.-.......- .||
T Consensus       105 ~LLYvAPERL~~------~~Fl~~L~~~~i~L~AvD----------EAHCvSQWGHDFRPeY~~L~~l~~~fp~~P~~iA  168 (607)
T TIGR01389       105 KLLYVAPERLEQ------DYFLNMLKRLTIALLAVD----------EAHCVSQWGHDFRPEYRRLGELAERFPQVPTRIA  168 (607)
T ss_pred             EEEEECCHHHHH------HHHHHHHHCCCCEEEEEE----------CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             577516713211------899988731993089983----------2502166888875658999999986789866998


Q ss_pred             ECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECC
Q ss_conf             65998999873689997789999999999997426659799999999999999997301684799997699649999558
Q gi|255764478|r  154 PFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAE  233 (418)
Q Consensus       154 ~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~  233 (418)
                      .-+|.            .                            .+..+.+++.|+=.+...+..+-.--+|.|++.+
T Consensus       169 LTATA------------d----------------------------~~t~~DI~~~L~L~~~~~f~~SFdRpNl~~~v~~  208 (607)
T TIGR01389       169 LTATA------------D----------------------------AETRQDIVELLRLKDANEFISSFDRPNLRFSVVK  208 (607)
T ss_pred             EECCC------------C----------------------------HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             72489------------9----------------------------8789999997088986541256775114334312


Q ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECCCHHHHHHHHH
Q ss_conf             82622788602589714686786316951314734189997003303540226869999788999998543799999886
Q gi|255764478|r  234 GHRWSGGSSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLNKIL  313 (418)
Q Consensus       234 ~~~w~~~~~~~~~G~~~~~NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~~~~l~~~l  313 (418)
                      ..          +...|.      -.|..-..++-.|+||..-                          -+.-|-+.+.|
T Consensus       209 k~----------n~~~~l------~~yl~~~~~G~SGIIYa~s--------------------------R~~VE~~~~~L  246 (607)
T TIGR01389       209 KN----------NKKKFL------LEYLKKHREGQSGIIYASS--------------------------RKKVEELAERL  246 (607)
T ss_pred             HC----------CCCHHH------HHHHHCCCCCCCEEEECCC--------------------------HHHHHHHHHHH
T ss_conf             03----------781368------9997507999534787677--------------------------04589999999


Q ss_pred             HCCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEECC-CCC-CEECCCCCCCCCCCCCCCCHHHHHHCCCCEEE----EEE
Q ss_conf             428985268799986686200110120033232057-526-41226775000367667883443206985012----458
Q gi|255764478|r  314 DIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDEN-AAS-HIAFGQCYSKCFKKPDNALDNWLEERGGNSSI----THI  387 (418)
Q Consensus       314 ~~d~~a~~igE~~ig~n~~~i~~~~~l~~n~L~DEk-~~~-H~A~G~~y~~~~~~~~~~~~~~~~~~g~n~S~----~H~  387 (418)
                      .+..=+--.-|=|+..+..+-++-.  |   |+||. +-+ .+|||                    .|+|.|-    +|.
T Consensus       247 ~s~G~~A~~YHAGL~~~~R~e~Q~~--F---l~d~~~vmVAT~AFG--------------------MGIdKpnVRFViH~  301 (607)
T TIGR01389       247 ESQGISALAYHAGLSNKVRAENQED--F---LYDDVKVMVATNAFG--------------------MGIDKPNVRFVIHA  301 (607)
T ss_pred             HHCCCCEEECCCCCCHHHHHHHHHH--H---HHHCCEEEEEEECCC--------------------CCCCCCCCCEEEEE
T ss_conf             7479620403679877689999754--4---462554888871235--------------------87478765488863


Q ss_pred             EE
Q ss_conf             79
Q gi|255764478|r  388 DW  389 (418)
Q Consensus       388 D~  389 (418)
                      |+
T Consensus       302 d~  303 (607)
T TIGR01389       302 DM  303 (607)
T ss_pred             CC
T ss_conf             68


No 122
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=36.68  E-value=29  Score=14.74  Aligned_cols=12  Identities=25%  Similarity=0.130  Sum_probs=7.1

Q ss_pred             EEEEECCCHHHH
Q ss_conf             599965998999
Q gi|255764478|r  150 WSIVPFPSCAWA  161 (418)
Q Consensus       150 W~i~~~Pt~awA  161 (418)
                      -+|+.+|...+.
T Consensus       114 D~IvPVPlh~~R  125 (227)
T PRK11595        114 DRIVSVPLWQRR  125 (227)
T ss_pred             CEEEECCCCHHH
T ss_conf             848723899899


No 123
>PRK09814 hypothetical protein; Provisional
Probab=36.68  E-value=29  Score=14.74  Aligned_cols=83  Identities=7%  Similarity=0.101  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCH-HHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHH
Q ss_conf             999999999987313479976999816535-8999999999998289886898727489899760598789862433679
Q gi|255764478|r   15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSA-LPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFC   93 (418)
Q Consensus        15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a-~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~   93 (418)
                      ....+...+......|++|+.|+++.|.-. ..+...+.......|++- +..+.|=+-  +|+...+.        +..
T Consensus        47 ~~~~~~~~~~~i~~~l~~gDivi~QyP~~~~~~~~~~l~~~lk~~~~K~-i~~IHDie~--LR~~~~~~--------~~~  115 (337)
T PRK09814         47 SLAERSQRIDGILASLNRGDIVVFQYPTYNGFEFDLLFIDKLKKKQIKI-IILIHDIEP--LRFGKSNY--------YLM  115 (337)
T ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEE-EEEECCCHH--HHCCCCCH--------HHH
T ss_conf             2999999999999577999999997898707889999999999759879-999776589--86567770--------367


Q ss_pred             HHHHHHHHCCCEEEE
Q ss_conf             999999847978999
Q gi|255764478|r   94 EGLAKAYSDNTALLS  108 (418)
Q Consensus        94 ~~~~~~~~~~~a~i~  108 (418)
                      ....+++...|.+|+
T Consensus       116 ~~ei~~ln~aD~iIv  130 (337)
T PRK09814        116 KEEIDMLNLSDVVIV  130 (337)
T ss_pred             HHHHHHHHHCCEEEE
T ss_conf             999999852899997


No 124
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=36.66  E-value=29  Score=14.74  Aligned_cols=42  Identities=21%  Similarity=0.200  Sum_probs=32.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHHHHHHHHH
Q ss_conf             999999999999987313479976999816535--899999999999
Q gi|255764478|r   12 DEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSA--LPLARLITKHAY   56 (418)
Q Consensus        12 ~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a--~~l~ral~~aa~   56 (418)
                      ++.-..++|+.+-+   .+++|+.|++..|..|  ..|+|.+.++.-
T Consensus         7 ~~~~t~~lg~~l~~---~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802           7 DEEATLALGERLAE---ALKAGDVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             99999999999996---578998899977876885999999999749


No 125
>PRK06178 acyl-CoA synthetase; Validated
Probab=36.27  E-value=29  Score=14.70  Aligned_cols=52  Identities=21%  Similarity=0.180  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      +.+-+++|..|..  ++|++||.|.|..+-..+ ++.+ .-++.++||-+|.+...
T Consensus        65 ~~~~~~lA~~L~~--~Gv~~GDrVai~~~n~~e-~v~a-~lA~~~~Gav~vpl~~~  116 (567)
T PRK06178         65 DELSDRFAALLAQ--HGVGPGDRVAVFLPNCPQ-FHIV-FFGILKLGAVHVPVSPL  116 (567)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHH-HHHH-HHHHHHHCCEEEEECCC
T ss_conf             9999999999997--595998999999388399-9999-99999849199956898


No 126
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.26  E-value=29  Score=14.70  Aligned_cols=37  Identities=14%  Similarity=0.017  Sum_probs=25.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf             76999816535899999999999828988689872748
Q gi|255764478|r   34 QHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE   71 (418)
Q Consensus        34 e~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~   71 (418)
                      -.+|..+...+..=+-.|++...+.|| .|.+.++...
T Consensus        73 kIlLgVtGsIAAYKa~~LvR~L~k~Ga-~V~vvmT~~A  109 (476)
T PRK13982         73 RITLIIGGGIAAYKALDLIRRLKERGA-EVRCVLTKAA  109 (476)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHHCCC-EEEEEECHHH
T ss_conf             799996748999999999999997899-8999978778


No 127
>TIGR00632 vsr DNA mismatch endonuclease Vsr; InterPro: IPR004603   This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine . GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine . The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology . ; GO: 0004519 endonuclease activity, 0006298 mismatch repair.
Probab=36.13  E-value=18  Score=16.17  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=17.1

Q ss_pred             EEEEEECCCCEECCCC---CCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             4999955882622788---60258971468678631695131
Q gi|255764478|r  226 SLKVGLAEGHRWSGGS---SIAQNGIMCNPNIPTEEVFTAPH  264 (418)
Q Consensus       226 DLt~~l~~~~~w~~~~---~~~~~G~~~~~NlP~GEVftaP~  264 (418)
                      ||-|.--.=-+..+|+   +..|+-.  +-.+-|-+=|++|+
T Consensus        75 D~vf~~~k~~iFidGCFWHg~~C~~~--~~~p~s~~~fW~~K  114 (143)
T TIGR00632        75 DIVFKEYKVVIFIDGCFWHGHDCDIL--GKVPKSRKDFWSPK  114 (143)
T ss_pred             CEEECCCEEEEEECCCEECCCCCCCC--CCCCCCCHHCCHHH
T ss_conf             54434735888602730058767401--47886642303688


No 128
>PRK06839 acyl-CoA synthetase; Validated
Probab=35.79  E-value=29  Score=14.65  Aligned_cols=53  Identities=11%  Similarity=0.138  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             99999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      +.+++|.-|.+ .+++++|+.|.|..+-..+-++  ..-++.++||-+|.+....+
T Consensus        36 ~~~~lA~~L~~-~~Gv~~Gd~V~i~~~n~~~~v~--~~lA~~~~Gav~vpl~~~~~   88 (496)
T PRK06839         36 YVSKVAAYFIY-ELNVKKGERIAILSQNSLEYIV--LLFAIAKVECIAVPLNIRLT   88 (496)
T ss_pred             HHHHHHHHHHH-HHCCCCCCEEEEEECCCHHHHH--HHHHHHHHCEEEEEECCCCC
T ss_conf             99999999889-5297998999999389899999--99999984929996589999


No 129
>KOG0572 consensus
Probab=35.67  E-value=30  Score=14.63  Aligned_cols=88  Identities=20%  Similarity=0.289  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHHHH----HHHHH----CCCCCCEEEEECCCCHH------HH--HHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf             9999999999999----98731----34799769998165358------99--999999999828988689872748989
Q gi|255764478|r   11 VDEFLLEKLAKVA----LQVGV----NIQEGQHLIVMAPVSAL------PL--ARLITKHAYMLGAGLVSVFYKDSEATL   74 (418)
Q Consensus        11 m~~~~L~kyA~ll----V~~~l----niqkGe~VlI~~d~~a~------~l--~ral~~aa~~~GA~~V~v~~~d~~~~r   74 (418)
                      ++|..|+|+.--+    ++|++    .+..=|..++.++..+.      .|  ...+-++..+.|-  .+-+-+|.++-.
T Consensus        58 Fte~~l~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~--~l~T~SDSElil  135 (474)
T KOG0572          58 FTEDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGV--GLNTSSDSELIL  135 (474)
T ss_pred             HCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCC--CCCCCCCHHHHH
T ss_conf             257778518554021113126665321025565587247722787306732366999999986075--014688289999


Q ss_pred             HHHHCCCHHHHHH-CCHHHHHHHHHHHH
Q ss_conf             9760598789862-43367999999984
Q gi|255764478|r   75 MLYKYGADYAFDR-VADWFCEGLAKAYS  101 (418)
Q Consensus        75 ~~~~~a~~e~l~~-~p~~~~~~~~~~~~  101 (418)
                      ..+.++++..+.. .|+|..+ ....++
T Consensus       136 ~~~a~~~~~~~~~~~~d~~~r-i~~~~~  162 (474)
T KOG0572         136 QLIAYAPEDVYRVDAPDWFAR-IRDVME  162 (474)
T ss_pred             HHHHHCHHHHHCCCCCCHHHH-HHHHHH
T ss_conf             999736576622447638999-999998


No 130
>PRK08314 acyl-CoA synthetase; Validated
Probab=35.59  E-value=30  Score=14.63  Aligned_cols=51  Identities=18%  Similarity=0.059  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+.+++|.-|.+ -++|++|+.|.|..+-..+-+ . +.-++.++||-+|.+..
T Consensus        43 ~~~~~lA~~L~~-~~Gv~~Gd~V~i~~~n~~e~~-~-~~lA~~~~Gav~vpl~~   93 (544)
T PRK08314         43 DEAERLAGYLQQ-KCGVKKGDRVLLYMQNSPQFI-I-AYYAILRANAVVVPVNP   93 (544)
T ss_pred             HHHHHHHHHHHH-HHCCCCCCEEEEEECCCHHHH-H-HHHHHHHHCCEEEEECC
T ss_conf             999999999999-539899899999908979999-9-99999985929997799


No 131
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=35.33  E-value=30  Score=14.60  Aligned_cols=51  Identities=14%  Similarity=-0.104  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|.+  .+|++||.|.|..+...+- + ..+-++.++||-+|.++..
T Consensus        47 ~~~~~lA~~L~~--~Gv~~GdrVai~~~n~~e~-v-~a~la~~~~Gav~vpl~~~   97 (540)
T PRK06018         47 QRALKVSQRLDR--DGIKLGDRVATIAWNTWRH-L-EAWYGIMGIGAICHTVNPR   97 (540)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEECCCCHHH-H-HHHHHHHHHCEEEEEECCC
T ss_conf             999999999997--6959879999990897999-9-9999999859499935899


No 132
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase; InterPro: IPR012749    This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family..
Probab=35.31  E-value=30  Score=14.60  Aligned_cols=49  Identities=24%  Similarity=0.287  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHH
Q ss_conf             99999999998731347997699981653589999999999982898868987274898
Q gi|255764478|r   15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEAT   73 (418)
Q Consensus        15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~   73 (418)
                      -|+ +|-+|+    +||+||.|+.=+-+    | ...+-|..-+||+.|+|+++.+.++
T Consensus        58 aLE-maAlL~----Di~~GDEVIMPSyT----F-VSTANAFvLRGa~~vFVDir~dTmN  106 (376)
T TIGR02379        58 ALE-MAALLL----DIQPGDEVIMPSYT----F-VSTANAFVLRGAKIVFVDIRPDTMN  106 (376)
T ss_pred             HHH-HHHHHH----CCCCCCEEECCCCH----H-HHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             999-999983----04688836757514----5-7766778672882799960420004


No 133
>PRK08279 acyl-CoA synthetase; Validated
Probab=35.15  E-value=30  Score=14.58  Aligned_cols=51  Identities=12%  Similarity=-0.020  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|..  .+|++||.|.|..+-..+- +.+ .-++.++||-+|.++..
T Consensus        75 ~~a~~lA~~L~~--~Gv~~GDrVai~l~ns~e~-vva-~lAi~kaGav~vpln~~  125 (602)
T PRK08279         75 AWANRYAHWAAA--RGVGKGDVVALMMENRPEY-LAA-WLGLAKLGVVVALLNTQ  125 (602)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHH-HHH-HHHHHHHCEEEEEECCC
T ss_conf             999999999997--5969989999992884999-999-99999859099731877


No 134
>PRK13382 acyl-CoA synthetase; Provisional
Probab=34.68  E-value=31  Score=14.53  Aligned_cols=54  Identities=15%  Similarity=0.043  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      +.+-+++|.-|..  ++|++|+.|.|..+...+ ++.+ .-++.++||-+|.++...+
T Consensus        75 ~~~~~~lA~~L~~--~Gv~~GdrVai~~~ns~e-~v~a-~lA~~k~Gav~vpl~~~~~  128 (540)
T PRK13382         75 DERSDALAAALQA--LPIGEPRVVGIMCRNHRG-FVEA-LLAANRIGADILLLNTSFA  128 (540)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHH-HHHHHHHCCEEEEECCCCC
T ss_conf             9999999999997--595886999999189699-9999-9999986919993689999


No 135
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=34.66  E-value=31  Score=14.53  Aligned_cols=14  Identities=14%  Similarity=0.116  Sum_probs=6.9

Q ss_pred             CCCCCCCCCCEEEE
Q ss_conf             14686786316951
Q gi|255764478|r  249 MCNPNIPTEEVFTA  262 (418)
Q Consensus       249 ~~~~NlP~GEVfta  262 (418)
                      .+...+..||+.+-
T Consensus       216 ~~irdv~PGEiv~i  229 (484)
T PRK07272        216 EFVRDVQPGEVVVI  229 (484)
T ss_pred             EEEEECCCCEEEEE
T ss_conf             69984389769999


No 136
>PRK06187 acyl-CoA synthetase; Validated
Probab=34.55  E-value=31  Score=14.52  Aligned_cols=51  Identities=18%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999999987313479976999816535899999999999828988689872
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      .+.+++|..|.+  .++++|+.|.|..+...+- +.+ .-++.++||-+|.+...
T Consensus        39 ~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~-i~~-~lA~~~~Gav~vpl~~~   89 (520)
T PRK06187         39 ERVNRLANALRA--LGVKKGDRVAVFGWNSHEY-LEA-YFAVPKIGAVLHPVNWR   89 (520)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHH-HHH-HHHHHHHCCEEEEECCC
T ss_conf             999999999997--5958859999993898999-999-99999859399962888


No 137
>PRK06164 acyl-CoA synthetase; Validated
Probab=34.49  E-value=31  Score=14.51  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             9999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      ..+.+++|..|.+  .+|++||.|.|..+...+-++  +.-++.++||-+|.+..
T Consensus        42 ~~~~~~~A~~L~~--~Gi~~Gd~V~i~~~n~~e~~~--~~lA~~~~Gav~vpi~~   92 (541)
T PRK06164         42 RALVDRLAAWLAA--QGVRRGDRVAVWLPNCIEWVV--LFLACARLGATVLAVNT   92 (541)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECC
T ss_conf             9999999999997--394985999999489799999--99999985909997589


No 138
>PRK07769 acyl-CoA synthetase; Validated
Probab=34.08  E-value=31  Score=14.46  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             9999999999987313479976999816535899999999999828988689
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSV   65 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v   65 (418)
                      .+.+++|..|-  .. +++|+.|.|..+.. .+++.+++ ++.++||-+|.+
T Consensus        61 ~ra~~lA~~L~--~~-v~~GDrVal~~~n~-~e~vva~l-a~l~aGav~VPl  107 (629)
T PRK07769         61 ARNRAVGARLQ--QV-TQPGDRVAILCPQN-LDYLISFF-GALYAGRIAVPL  107 (629)
T ss_pred             HHHHHHHHHHH--HC-CCCCCEEEEECCCC-HHHHHHHH-HHHHHCEEECCC
T ss_conf             99999999998--57-99999899987887-99999999-999859799126


No 139
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=33.27  E-value=32  Score=14.38  Aligned_cols=10  Identities=30%  Similarity=0.594  Sum_probs=4.3

Q ss_pred             CCCCCCEEEE
Q ss_conf             6786316951
Q gi|255764478|r  253 NIPTEEVFTA  262 (418)
Q Consensus       253 NlP~GEVfta  262 (418)
                      .+..||+.+.
T Consensus       207 dv~PGEii~i  216 (442)
T PRK08341        207 DVRPGEVFVV  216 (442)
T ss_pred             ECCCCEEEEE
T ss_conf             7369848997


No 140
>pfam02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
Probab=33.08  E-value=32  Score=14.36  Aligned_cols=90  Identities=13%  Similarity=0.013  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHH
Q ss_conf             699999999999999873134799769998165--358999999999998289886898727489899760598789862
Q gi|255764478|r   10 HVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDR   87 (418)
Q Consensus        10 ~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~   87 (418)
                      .+++..+.++|.-+.++--+-.++..|+|-.|.  .+..|.+++.......|...+.+..            .|.     
T Consensus        17 ~lt~~~~~~i~~a~~~~l~~~~~~~~I~ig~D~R~ss~~~~~~~~~gl~~~G~~v~~~g~------------~pT-----   79 (138)
T pfam02878        17 ELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARALAAGLAANGVEVILLGL------------LPT-----   79 (138)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCC------------CCC-----
T ss_conf             889999999999999999864899979999799677999999999970441978963588------------798-----


Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEECC-CCHHHCCC
Q ss_conf             4336799999998479789998159-73243079
Q gi|255764478|r   88 VADWFCEGLAKAYSDNTALLSISGD-NPLLLVNE  120 (418)
Q Consensus        88 ~p~~~~~~~~~~~~~~~a~i~i~~~-np~~l~~v  120 (418)
                       |-  ..... ...+.++-|.|+++ ||..-.++
T Consensus        80 -P~--~~~~v-~~~~~~~Gi~ITASHNP~~~nGi  109 (138)
T pfam02878        80 -PA--LSFAT-RKLNADGGIMITASHNPPDYNGI  109 (138)
T ss_pred             -HH--HHHHH-HHCCCCEEEEEECCCCCCCCCEE
T ss_conf             -19--99999-96169749999827899753569


No 141
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=33.02  E-value=32  Score=14.35  Aligned_cols=29  Identities=21%  Similarity=0.523  Sum_probs=24.4

Q ss_pred             EEEEEECCCEEEEEEEECCCCEEEEEECCEE
Q ss_conf             5879967881999998179959998867845
Q gi|255764478|r  386 HIDWMIGSGDMNVDGLTKNGVLVPIMRGGEW  416 (418)
Q Consensus       386 H~D~~~~~~~i~vdgi~~dG~~~~i~~~G~~  416 (418)
                      -=|+++.++++.|..+...|+.  +++||+-
T Consensus       352 dADlVi~D~dl~v~~v~~~G~~--v~~~~~~  380 (387)
T cd01308         352 DADLVILDKDLDINSVIAKGQI--MVRNGKL  380 (387)
T ss_pred             CCCEEEECCCCCEEEEEECCEE--EEECCEE
T ss_conf             2638998999986589998899--9999988


No 142
>PRK07529 acyl-CoA synthetase; Validated
Probab=32.98  E-value=33  Score=14.34  Aligned_cols=43  Identities=9%  Similarity=0.042  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999873134799769998165358999999999998289
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA   60 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA   60 (418)
                      .+.+++|..|..  ++|++|+.|.|..+-..+ ++-++.- +.++|+
T Consensus        66 ~~~~~lA~~L~~--~Gv~~GDrVai~lpN~~E-~v~a~la-~~~~Gi  108 (632)
T PRK07529         66 ADVTRTANLLHS--LGVGPGDVVAFLLPNLPE-THFALWG-GEAAGI  108 (632)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEECCCHHH-HHHHHHH-HHHHCE
T ss_conf             999999999997--396998999999388199-9999999-998729


No 143
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.48  E-value=33  Score=14.29  Aligned_cols=51  Identities=18%  Similarity=0.223  Sum_probs=33.6

Q ss_pred             CCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf             2015540699999999999999873134799769998165358999999999998289
Q gi|255764478|r    3 KSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA   60 (418)
Q Consensus         3 ~~~~~~~~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA   60 (418)
                      +=..+...+|++.+++.++.+.+       -.+|.+..--..-.+++.+.......|-
T Consensus         7 ei~~t~~~id~~~i~~~v~~I~~-------a~~I~v~G~G~Sg~ia~~~a~rL~~~G~   57 (179)
T TIGR03127         7 EISQVASRIDEEELDKLADKIIK-------AKRIFVAGAGRSGLVGKAFAMRLMHLGF   57 (179)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf             99999996699999999999973-------9909999955439999999999985197


No 144
>pfam00718 Polyoma_coat Polyomavirus coat protein.
Probab=32.23  E-value=33  Score=14.26  Aligned_cols=44  Identities=18%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             CCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEECCCCCCEECCC
Q ss_conf             28985268799986686200110120033232057526412267
Q gi|255764478|r  315 IDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQ  358 (418)
Q Consensus       315 ~d~~a~~igE~~ig~n~~~i~~~~~l~~n~L~DEk~~~H~A~G~  358 (418)
                      ..||.||.|-+-=|.+.-|.-+.+--.--+|.|||.-|-+-.|+
T Consensus       192 kNENtRYfG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd  235 (296)
T pfam00718       192 KNENTRYFGTYTGGTNTPPVLQFTNTVTTVLLDENGVGPLCKGD  235 (296)
T ss_pred             CCCCCEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf             57673167764078789972875375048877578853567078


No 145
>PRK07798 acyl-CoA synthetase; Validated
Probab=32.08  E-value=34  Score=14.25  Aligned_cols=49  Identities=16%  Similarity=0.050  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999873134799769998165358999999999998289886898
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      .+.+++|.-|.  .++++||+.|.|..+...+-++  +.-++.++||-+|.+.
T Consensus        36 ~~v~~~A~~L~--~~Gi~~gdrV~i~~~n~~e~~~--~~lA~~~~Gav~vpl~   84 (532)
T PRK07798         36 ARANRLAHYLI--DQGLGGGDKVGLYARNRIEYVE--AMLGAFKARAVPVNVN   84 (532)
T ss_pred             HHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEECC
T ss_conf             99999999999--7595885999999489899999--9999998491998128


No 146
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=31.79  E-value=34  Score=14.21  Aligned_cols=10  Identities=20%  Similarity=0.571  Sum_probs=3.8

Q ss_pred             CCCCCCEEEE
Q ss_conf             3479976999
Q gi|255764478|r   29 NIQEGQHLIV   38 (418)
Q Consensus        29 niqkGe~VlI   38 (418)
                      ++++|++|+|
T Consensus       173 ~~~~g~~VlV  182 (358)
T TIGR03451       173 GVKRGDSVAV  182 (358)
T ss_pred             CCCCCCEEEE
T ss_conf             7999988999


No 147
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627   L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=31.66  E-value=34  Score=14.20  Aligned_cols=145  Identities=17%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             HHHHHHCCCC-CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHH-
Q ss_conf             9987313479-97699981653589999999999982898868987274898997605987898624336799999998-
Q gi|255764478|r   23 ALQVGVNIQE-GQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAY-  100 (418)
Q Consensus        23 lV~~~lniqk-Ge~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~-  100 (418)
                      .|++.|.-|. |+.|+|+.--.===|+-|+++   ..||.+|++.=..+.-.|+==+.+-+....-.-+-..+.+.++- 
T Consensus       151 AVhTvL~~~~~G~~vlv~GaGPiGlma~AVAK---a~GA~~Vi~~d~neyRleLAkk~Gat~~vn~~kEd~~k~v~~lt~  227 (341)
T TIGR00692       151 AVHTVLESDLAGEDVLVIGAGPIGLMAVAVAK---AAGARNVIVIDKNEYRLELAKKMGATRVVNVAKEDLVKVVAELTS  227 (341)
T ss_pred             HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH---HHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCC
T ss_conf             44465257768871899857747899999987---727840599658647999998709865870101476898884038


Q ss_pred             -HCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             -4797899981597324307998899988898899989999998458873599965998999873689997789999999
Q gi|255764478|r  101 -SDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLAN  179 (418)
Q Consensus       101 -~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~  179 (418)
                       +-.|+++...| .|.++.               .     +-..++.-=|-.+.+.|            +..|+++---.
T Consensus       228 geG~Dv~lEmSG-aP~A~~---------------~-----gL~~~~~gGR~~~Lglp------------p~~vtID~tNk  274 (341)
T TIGR00692       228 GEGVDVVLEMSG-APKALE---------------Q-----GLDAVANGGRVALLGLP------------PSDVTIDLTNK  274 (341)
T ss_pred             CCCEEEEEECCC-CCHHHH---------------H-----HHHHHCCCCEEEECCCC------------CCCEEEEECCC
T ss_conf             896479986489-917999---------------9-----99985068808981368------------97612630374


Q ss_pred             HHHHHHHCCC---CCHHHHHHHHHHHH
Q ss_conf             9999974266---59799999999999
Q gi|255764478|r  180 TIFSVSRAHC---IDPIAAWAEHNNFL  203 (418)
Q Consensus       180 ~if~a~~~d~---~Dpv~~w~~~~~~~  203 (418)
                      .||++..+.+   -.+-..|.++++.+
T Consensus       275 viFKgLtI~GItGR~mfeTWy~vs~Li  301 (341)
T TIGR00692       275 VIFKGLTIKGITGRKMFETWYKVSRLI  301 (341)
T ss_pred             EEEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf             788642772000750467899999984


No 148
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=31.54  E-value=34  Score=14.19  Aligned_cols=10  Identities=30%  Similarity=0.424  Sum_probs=4.7

Q ss_pred             CCEEEEEECC
Q ss_conf             3169513147
Q gi|255764478|r  257 EEVFTAPHAR  266 (418)
Q Consensus       257 GEVftaP~~~  266 (418)
                      +++|++.+.-
T Consensus        89 ~~~~~~~v~S   98 (189)
T PRK09219         89 DNVYTATVYS   98 (189)
T ss_pred             CCEEEEEEEE
T ss_conf             9768999993


No 149
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298   This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=31.54  E-value=34  Score=14.19  Aligned_cols=68  Identities=25%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE------------ECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             69998165358999999999998289886898------------727489899760598789862433679999999847
Q gi|255764478|r   35 HLIVMAPVSALPLARLITKHAYMLGAGLVSVF------------YKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSD  102 (418)
Q Consensus        35 ~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~------------~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~  102 (418)
                      .|||=|....-|=.|-+.++|++.|-+|++|.            .-|...+...-.-|+++||++.-     -|++ .++
T Consensus        98 lLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~LgA~deQLDFP~-----vYAS-a~~  171 (609)
T TIGR01394        98 LLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIELGADDEQLDFPI-----VYAS-ARA  171 (609)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH-----HHHH-HCC
T ss_conf             9998578889885347899999568936999713478878837887578788885388800101256-----7665-236


Q ss_pred             CCEEEE
Q ss_conf             978999
Q gi|255764478|r  103 NTALLS  108 (418)
Q Consensus       103 ~~a~i~  108 (418)
                      +.|.+.
T Consensus       172 G~A~l~  177 (609)
T TIGR01394       172 GWASLD  177 (609)
T ss_pred             CCCCCC
T ss_conf             720144


No 150
>pfam09572 RE_XamI XamI restriction endonuclease. This family includes the XamI (recognizes GTCGAC but cleavage site unknown) restriction endonuclease.
Probab=31.46  E-value=34  Score=14.18  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89998999999845887359996599899987368999778999999999999742--6659799999999999999997
Q gi|255764478|r  132 YLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRA--HCIDPIAAWAEHNNFLHQKSQW  209 (418)
Q Consensus       132 ~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~--d~~Dpv~~w~~~~~~~~~~~~~  209 (418)
                      ..+....+..-.....+.|....-+-.          +.+.    .--...-+.++  --.||+.-..+..+.+.++++|
T Consensus        67 l~ki~~iI~~~lDpdiF~Wl~~g~~pt----------~~E~----~rAAtivAdrL~~ava~pi~RnaqErRQl~~I~~~  132 (251)
T pfam09572        67 LQKVVAVIEKMLDPDRFPWVGRGRTPT----------DIER----ELAATIVADRLCGAVADPIQRNAQERRQLAAIKSW  132 (251)
T ss_pred             HHHHHHHHHHHCCCCCCCEECCCCCCC----------HHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999999851843010115899998----------8899----99999999999987425876646778889999999


Q ss_pred             HCCCCEEEEEE
Q ss_conf             30168479999
Q gi|255764478|r  210 LSQRDFAEIRF  220 (418)
Q Consensus       210 Ln~~~~~~i~~  220 (418)
                      |..+.|.++..
T Consensus       133 L~A~Gy~k~~~  143 (251)
T pfam09572       133 LEARGYTQLAT  143 (251)
T ss_pred             HHHCCCEECCC
T ss_conf             99669656467


No 151
>PRK04527 argininosuccinate synthase; Provisional
Probab=31.44  E-value=34  Score=14.17  Aligned_cols=43  Identities=14%  Similarity=0.216  Sum_probs=25.0

Q ss_pred             CCEEEEEECCEEEEEECCCH--HHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf             68699997889999985437--999998864289852687999866
Q gi|255764478|r  286 ENIRVRFDQGRVVEASASKG--EEMLNKILDIDEGARRLGEVALVP  329 (418)
Q Consensus       286 ~~~~l~f~~G~vv~~~a~~~--~~~l~~~l~~d~~a~~igE~~ig~  329 (418)
                      +-|+++||+|.-|.+.|..-  .+++..+-+. -|..=||=+-++-
T Consensus       217 ~~v~I~Fe~G~PValnG~~~~~~eli~~LN~i-gg~hGiGRid~VE  261 (397)
T PRK04527        217 LTVTLKFVEGEAVALDGKPLPGAQILAKLNTL-FAQYGVGRGVYTG  261 (397)
T ss_pred             EEEEEEEECCEEEEECCCCCCHHHHHHHHHHH-HHHCCCCCEEEEC
T ss_conf             69888887878557468447869999999998-7635628546652


No 152
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100   This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=31.40  E-value=24  Score=15.32  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             HHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEE
Q ss_conf             9999742-----6659799999999999999997301684799997699649
Q gi|255764478|r  181 IFSVSRA-----HCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSL  227 (418)
Q Consensus       181 if~a~~~-----d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDL  227 (418)
                      +.+++-.     +..||+++|+.+.+.|+++..-|.++.  +|-+-+ ..||
T Consensus       246 viD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~--~~iv~N-K~Dl  294 (296)
T TIGR02729       246 VIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKP--QIIVLN-KIDL  294 (296)
T ss_pred             EEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCC--EEEEEE-ECCC
T ss_conf             980687534242898889999999999975087362780--799986-0677


No 153
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1,  is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=31.31  E-value=35  Score=14.16  Aligned_cols=37  Identities=5%  Similarity=0.010  Sum_probs=23.2

Q ss_pred             HHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCC
Q ss_conf             9873134799769998165--358999999999998289
Q gi|255764478|r   24 LQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGA   60 (418)
Q Consensus        24 V~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA   60 (418)
                      |+.-+-+-+||+++|.++.  ....|+..+...+.+.-+
T Consensus        60 ID~l~pigkGQR~~I~~~~g~GKt~ll~~ii~~~~~~~~   98 (274)
T cd01133          60 IDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHG   98 (274)
T ss_pred             EECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             644466147857787579999823689999999985089


No 154
>PRK13820 argininosuccinate synthase; Provisional
Probab=31.17  E-value=35  Score=14.14  Aligned_cols=208  Identities=15%  Similarity=0.126  Sum_probs=91.8

Q ss_pred             CEEEEECCCCH-HHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             76999816535-89999999999982898868987274898997605987898624336799999998479789998159
Q gi|255764478|r   34 QHLIVMAPVSA-LPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGD  112 (418)
Q Consensus        34 e~VlI~~d~~a-~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~~~a~i~i~~~  112 (418)
                      |.+-+++|... .+-...+-+.|.+.|++.+++...++-+...                    ...+++..+.|-   + 
T Consensus        31 eVi~~~~d~Gq~~e~~~~~~~kA~~~G~~~~viD~r~ef~~~~--------------------i~paI~ana~Ye---g-   86 (395)
T PRK13820         31 EVITVAVDVGQPEEEIKEAEEKAKKLGVKHYTIDAKEEFAKDY--------------------IFPAIKANALYE---G-   86 (395)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH--------------------HHHHHHCCCCCC---C-
T ss_conf             6999999899976776999999997099499981699999999--------------------999997087326---7-


Q ss_pred             CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             73243079988999888988999899999984588735999659989998736899977899999999999974266597
Q gi|255764478|r  113 NPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDP  192 (418)
Q Consensus       113 np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~d~~Dp  192 (418)
                        ..|. ..-.|...+.+.-..+     .  ..   .-+.++.-..          ..+...-+|+-. |.+--+.---|
T Consensus        87 --YpL~-tslaRplia~~~v~~A-----~--~~---ga~aiaHG~T----------GkGNDQvRFe~~-~~ap~~~iiaP  142 (395)
T PRK13820         87 --YPLG-TALARPLIAKKIVEVA-----K--KE---GASAIAHGCT----------GKGNDQLRFEAV-FRATDLDVIAP  142 (395)
T ss_pred             --CCCC-CCHHHHHHHHHHHHHH-----H--HC---CCEEEEECCC----------CCCCHHHHHHHH-HHCCCCEEEEE
T ss_conf             --3032-4104689999999999-----9--75---9829830777----------898709999999-86789868721


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEE---CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE
Q ss_conf             999999999999999973016847999976996499995588262---27886025897146867863169513147341
Q gi|255764478|r  193 IAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRW---SGGSSIAQNGIMCNPNIPTEEVFTAPHARRVE  269 (418)
Q Consensus       193 v~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w---~~~~~~~~~G~~~~~NlP~GEVftaP~~~~vn  269 (418)
                      +-+|+-.   -+...+++.++.   |-+++.. .-.+|+- .-.|   ..++..-.+     -|-|..++|.-.+     
T Consensus       143 ~R~~~~~---R~~~i~ya~~~g---I~v~~~~-~~~yS~D-~NLwg~S~Egg~LEdp-----~~~pped~~~~t~-----  204 (395)
T PRK13820        143 IRELNLT---REWEIEYAKEHG---IPVPVGK-EKPWSID-ENLWSRSIEGGKLEDP-----MFEPPEEIYAWTV-----  204 (395)
T ss_pred             ECCHHHH---HHHHHHHHHHCC---CCCCCCC-CCCCCCC-CCCCCEEECCCCCCCC-----CCCCCCCCEEECC-----
T ss_conf             0453345---899999999859---9888888-8885245-5502311057876896-----5466523010047-----


Q ss_pred             EEEEEEEEEECCCCEECCEEEEEECCEEEEEECCC--HHHHHHHHHH
Q ss_conf             89997003303540226869999788999998543--7999998864
Q gi|255764478|r  270 GYATSTKPLVYQGMLIENIRVRFDQGRVVEASASK--GEEMLNKILD  314 (418)
Q Consensus       270 G~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~~--~~~~l~~~l~  314 (418)
                             |..-.-..-+-|+++|++|.-|.+.++.  ..+++..+-+
T Consensus       205 -------~p~~aPd~pe~v~I~Fe~G~PvainG~~~~~~eli~~LN~  244 (395)
T PRK13820        205 -------SPEDAPDKPEIVEIEFEAGVPVAINGEKMEGVELIRKLNE  244 (395)
T ss_pred             -------CHHHCCCCCEEEEEEEECCEEEEECCEECCHHHHHHHHHH
T ss_conf             -------9667898876999999666789987978889999999999


No 155
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=31.15  E-value=35  Score=14.14  Aligned_cols=106  Identities=20%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEECCCC--CCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf             999999999999999730168479999769964999955882622788--602589714686786316951314734189
Q gi|255764478|r  194 AAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGS--SIAQNGIMCNPNIPTEEVFTAPHARRVEGY  271 (418)
Q Consensus       194 ~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w~~~~--~~~~~G~~~~~NlP~GEVftaP~~~~vnG~  271 (418)
                      =+|+++.++=++..++||..--..|.  ..+-|+-.+.   -.+.++.  .+.-+|     ..-+-|||+||+      +
T Consensus        83 F~f~~l~~~RdaYv~rl~~~Y~~~L~--~~~vd~i~G~---A~F~~~~kPtveV~g-----~~nttevy~A~H------I  146 (475)
T TIGR01421        83 FNFKELKEKRDAYVDRLNGIYQKNLE--KNKVDVIEGH---AEFTKDQKPTVEVNG-----KENTTEVYTAPH------I  146 (475)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCC--CCCEEEEEEE---EEECCCCCCCEEECC-----CCCCEEEEECCE------E
T ss_conf             07799987667899998887524865--0554389867---887488896347736-----424302576270------5


Q ss_pred             EEEEE--EEECC-----C----CEECC-EEEEEECCEEEEEECCCHHHHHHHHHHC
Q ss_conf             99700--33035-----4----02268-6999978899999854379999988642
Q gi|255764478|r  272 ATSTK--PLVYQ-----G----MLIEN-IRVRFDQGRVVEASASKGEEMLNKILDI  315 (418)
Q Consensus       272 i~~d~--p~~~~-----G----~~~~~-~~l~f~~G~vv~~~a~~~~~~l~~~l~~  315 (418)
                      ++.+|  |..+.     |    .-=++ |.|+=-=++||=+-|+--+-.|.-.|+.
T Consensus       147 liATGG~p~~phe~~IPG~elG~~SdGfF~LEElP~~~v~vGAGYIAvELAGvLh~  202 (475)
T TIGR01421       147 LIATGGKPSIPHEENIPGAELGLDSDGFFALEELPKRVVIVGAGYIAVELAGVLHG  202 (475)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf             89448724787546778401057700200220178717999073898888888731


No 156
>PRK06060 acyl-CoA synthetase; Validated
Probab=31.03  E-value=35  Score=14.13  Aligned_cols=53  Identities=15%  Similarity=0.121  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             999999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      +.+-+++|..|..  ..|++|+.|.|..+-.. +++.++. ++.++||-+|.++-.-
T Consensus        37 ~~ranRLA~~L~~--~GV~pGDrVal~lpns~-e~VvalL-AvlkAGaa~VPldP~~   89 (705)
T PRK06060         37 HDGAARLGEVLRN--RGLSSGDRVLLCLPDSP-DLVQLLL-ACLARGVMAFLANPEL   89 (705)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCH-HHHHHHH-HHHHHCEEEECCCCCC
T ss_conf             9999999999998--79797999999948809-9999999-9999494784779899


No 157
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=30.84  E-value=35  Score=14.11  Aligned_cols=112  Identities=14%  Similarity=0.259  Sum_probs=64.1

Q ss_pred             CCCHHHHH-------------HHHHHHHHHHHHHHCCCCEE-EEEEECCCCEEEEEECCCCEECCCCCCCCCCCCCCCCC
Q ss_conf             65979999-------------99999999999973016847-99997699649999558826227886025897146867
Q gi|255764478|r  189 CIDPIAAW-------------AEHNNFLHQKSQWLSQRDFA-EIRFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNPNI  254 (418)
Q Consensus       189 ~~Dpv~~w-------------~~~~~~~~~~~~~Ln~~~~~-~i~~~~~gTDLt~~l~~~~~w~~~~~~~~~G~~~~~Nl  254 (418)
                      ..+|-.+|             ++|.++-.++++||.++..+ +|.|.+.|.-+.|.+.+ ..+..         .|.-++
T Consensus       231 ~~~p~~a~l~~rGl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPG~gg~~sf~l~~-~~~~~---------~f~~~l  300 (366)
T PRK08247        231 VLSPFDSWLLIRGMKTLALRMRQHEENAKALAAFLNEQPGVTDVLYPGKGGMLSFRLQD-EEWVN---------PFLKSL  300 (366)
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC-HHHHH---------HHHHHC
T ss_conf             77937777886352509999999999999999998619970489569987779999788-89999---------999847


Q ss_pred             CCCCEEE-EEECCCEEEEEEEEEEEECCCCEEC-CEEEEEECCEE-EEEECCCHHHHHHHHH
Q ss_conf             8631695-1314734189997003303540226-86999978899-9998543799999886
Q gi|255764478|r  255 PTEEVFT-APHARRVEGYATSTKPLVYQGMLIE-NIRVRFDQGRV-VEASASKGEEMLNKIL  313 (418)
Q Consensus       255 P~GEVft-aP~~~~vnG~i~~d~p~~~~G~~~~-~~~l~f~~G~v-v~~~a~~~~~~l~~~l  313 (418)
                         ++|. +|-.++++=.|....++.+.....+ -...-+.+|-| +++--|.-+|++..+.
T Consensus       301 ---~l~~~a~SlGg~eSLi~~pa~~th~~~~~~~r~~~Gi~~~liRlSvGLEd~~DLi~Dl~  359 (366)
T PRK08247        301 ---KLITFAESLGGVESFITYPATQTHMDIPEEIRIANGVCNRLLRFSVGIENVEDLKADLK  359 (366)
T ss_pred             ---CCCEEECCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHH
T ss_conf             ---43668126576772445764245422899999975989295999950089999999999


No 158
>PRK05605 acyl-CoA synthetase; Validated
Probab=30.52  E-value=36  Score=14.07  Aligned_cols=50  Identities=14%  Similarity=0.143  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             999999999999873134799769998165358999999999998289886898
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      +.+.+++|..|.  .++|++|+.|.|..+-..+-++  ..-++.++||-+|.++
T Consensus        61 ~~~~~~lA~~L~--~~Gv~~Gd~V~i~l~ns~e~v~--~~lA~~k~Gav~vpln  110 (571)
T PRK05605         61 GKQVRRAAAGLR--ALGVRPGDRVAIVLPNCPQHIV--AFYAVLRLGAVVVEHN  110 (571)
T ss_pred             HHHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEECCC
T ss_conf             999999999999--7596998999999189799999--9999998593997108


No 159
>PRK05852 acyl-CoA synthetase; Validated
Probab=30.20  E-value=36  Score=14.04  Aligned_cols=54  Identities=13%  Similarity=-0.015  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      +.+.+++|..|.+  .++++|+.|.|..+...+-++  ..-++.++||-+|.+....+
T Consensus        50 ~~~~~~lA~~L~~--~Gi~~Gd~V~l~~~n~~e~i~--~~lAi~~aGav~vpi~p~~~  103 (530)
T PRK05852         50 ARLVDDLAGQLTR--SGLLPGDRVALRMGSNAEFVV--ALLAASRADLVVVPLDPALP  103 (530)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECCCCC
T ss_conf             9999999999997--596894999999388299999--99999985949997589899


No 160
>PRK06145 acyl-CoA synthetase; Validated
Probab=29.94  E-value=36  Score=14.01  Aligned_cols=54  Identities=20%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             9999999999998731347997699981653589999999999982898868987274
Q gi|255764478|r   13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        13 ~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      ..+.+++|..|..  .++++|+.|.|..+...+-++  +.-++.++||-+|.+....+
T Consensus        34 ~~~~~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e~v~--~~lA~~~~Gav~vpl~~~~~   87 (497)
T PRK06145         34 HQRILQAAGMLHA--RGIGQGDVVALLMKNSAAFLE--LAFAASYLGAVFLPINYRLA   87 (497)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHH--HHHHHHHHCCEEEEECCCCC
T ss_conf             9999999999997--494885999999489699999--99999985909994489899


No 161
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance.  Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis.  The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC.  Bacitracin has potent antibiotic activity against gram-positive bacteria.  The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin.  The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC.  B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=29.37  E-value=37  Score=13.94  Aligned_cols=32  Identities=13%  Similarity=0.248  Sum_probs=22.3

Q ss_pred             HHHHHCCCCCCEEEEECCCCH--HHHHHHHHHHH
Q ss_conf             987313479976999816535--89999999999
Q gi|255764478|r   24 LQVGVNIQEGQHLIVMAPVSA--LPLARLITKHA   55 (418)
Q Consensus        24 V~~~lniqkGe~VlI~~d~~a--~~l~ral~~aa   55 (418)
                      =+.++.+++||.+-+..+-.+  ..|.+.+.--.
T Consensus        17 ~~vs~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~   50 (208)
T cd03268          17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             1516688698199999999999999999995783


No 162
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=29.00  E-value=38  Score=13.90  Aligned_cols=50  Identities=14%  Similarity=0.096  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+.+++|..|.  ..++++|+.|.|..+...+-++-  .-++.++||-+|.+.-
T Consensus        33 ~~~~~~A~~L~--~~Gi~~gd~V~i~~~n~~e~~~~--~lA~~~~Gav~vpl~~   82 (515)
T TIGR03098        33 ERVLALASGLR--GLGLARGERVAIYLDKRLETVTA--MFGAALAGGVFVPINP   82 (515)
T ss_pred             HHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHHHH--HHHHHHHCCEEEEECC
T ss_conf             99999999999--72939959999994897999999--9999986969998689


No 163
>TIGR00068 glyox_I lactoylglutathione lyase; InterPro: IPR004361 Glyoxalase I (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway in the following reaction:  glutathione + methylglyoxal = (R)-S-lactoylglutathione  S-lactoylglutathione is then converted by glyoxalase II to lactic acid . Glyoxalase I is a ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. In bacteria and mammals the enzyme is a protein of about 130 to 180 residues while in fungi it is about twice as long. In these organisms the enzyme is built out of the tandem repeat of a homologous domain.; GO: 0004462 lactoylglutathione lyase activity, 0005975 carbohydrate metabolic process.
Probab=28.93  E-value=24  Score=15.29  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             CCEEEEEECCEEEEEECCCHHHHHHHHHHCCCCC---CEEEEEEEECCC
Q ss_conf             6869999788999998543799999886428985---268799986686
Q gi|255764478|r  286 ENIRVRFDQGRVVEASASKGEEMLNKILDIDEGA---RRLGEVALVPHS  331 (418)
Q Consensus       286 ~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~d~~a---~~igE~~ig~n~  331 (418)
                      +-+..+|..-.+++-+-..|-+-= ..-..|-|.   |=-|||||+..+
T Consensus        82 E~~~W~~~~~a~iELTyNWG~~~D-~~~~Y~~G~s~PRgFGHiai~VdD  129 (183)
T TIGR00068        82 ERIAWTLSRKAVIELTYNWGTEKD-EFKGYDLGNSEPRGFGHIAIGVDD  129 (183)
T ss_pred             CCEEEECCCCEEEEEEECCCCCCC-CCCCCCCCCCCCCCEEEEECCHHH
T ss_conf             206552057448888625788721-333454778888611146415046


No 164
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.65  E-value=38  Score=13.86  Aligned_cols=20  Identities=15%  Similarity=0.368  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             9999999973016847999976
Q gi|255764478|r  201 NFLHQKSQWLSQRDFAEIRFSG  222 (418)
Q Consensus       201 ~~~~~~~~~Ln~~~~~~i~~~~  222 (418)
                      +.+++.+++|.+++  +|.+-|
T Consensus       129 ~~i~~av~li~~A~--~I~i~G  148 (293)
T PRK11337        129 DEIHRAARFFYQAR--QRDLYG  148 (293)
T ss_pred             HHHHHHHHHHHHCC--CEEEEE
T ss_conf             99999999998279--708998


No 165
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase; InterPro: IPR006233   Cystathionine beta-lyase (alternate name: beta-cystathionase) is one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys .; GO: 0004121 cystathionine beta-lyase activity, 0006520 amino acid metabolic process, 0005737 cytoplasm.
Probab=28.46  E-value=38  Score=13.83  Aligned_cols=152  Identities=17%  Similarity=0.243  Sum_probs=83.8

Q ss_pred             CCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf             4799769998165--35899999999999828988689872748989976059878986243367999999984797899
Q gi|255764478|r   30 IQEGQHLIVMAPV--SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALL  107 (418)
Q Consensus        30 iqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~~~a~i  107 (418)
                      ||.||.|||+-..  .+..|...+.+   +.|   |.+.|.||.+.                   ++..+.+++...-+|
T Consensus        91 vkaGDhvL~vdsaY~PTr~Fcd~vLk---r~g---v~~~YYDP~ig-------------------Pe~ia~Li~pnTkv~  145 (389)
T TIGR01324        91 VKAGDHVLVVDSAYKPTRRFCDIVLK---RLG---VEVEYYDPKIG-------------------PEDIAALIKPNTKVV  145 (389)
T ss_pred             HHCCCEEEEECCCCCHHHHHHHHHHH---HHC---EEEEEECCCCC-------------------HHHHHHHCCCCCEEE
T ss_conf             74388379864646115899988753---634---45887278868-------------------888987408884489


Q ss_pred             EEECC--CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE---------------EEE---CCCHHHHHHHCCC
Q ss_conf             98159--732430799889998889889998999999845887359---------------996---5998999873689
Q gi|255764478|r  108 SISGD--NPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWS---------------IVP---FPSCAWAEIVYPD  167 (418)
Q Consensus       108 ~i~~~--np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~---------------i~~---~Pt~awA~~vfp~  167 (418)
                      .+.+|  ++.+..+|++=..++...++.        .+.-.++.|.               |-+   ||. +--+ ||-+
T Consensus       146 flEaP~S~TfE~qDIPaIakaA~kv~~g--------~~~miDNTWaagllFkpL~HgvdiSiqA~TKY~~-GHSD-~~~G  215 (389)
T TIGR01324       146 FLEAPASLTFEVQDIPAIAKAARKVAAG--------VVVMIDNTWAAGLLFKPLEHGVDISIQAATKYLA-GHSD-VLLG  215 (389)
T ss_pred             EEECCCCCEECCCCHHHHHHHHHHCCCC--------EEEEEECCCCCHHHCCCCCCCCCEEEEECCCCCC-CCCH-HHHH
T ss_conf             9837874510358846899998641898--------2999636302001023001786368750335575-5002-4563


Q ss_pred             --CCHHHHHHHHH-HHHHHHHHCCCCCHHHHH-------------HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             --99778999999-999999742665979999-------------9999999999997301684799
Q gi|255764478|r  168 --DPVPIAIAKLA-NTIFSVSRAHCIDPIAAW-------------AEHNNFLHQKSQWLSQRDFAEI  218 (418)
Q Consensus       168 --~~~~~s~~~l~-~~if~a~~~d~~Dpv~~w-------------~~~~~~~~~~~~~Ln~~~~~~i  218 (418)
                        ...+...++|- |..+.....-..|  .+|             ++|.+.-=++++||.++..++-
T Consensus       216 tv~an~~~w~qL~Ge~~~~~G~~v~~D--daYt~lRGlRTlgvRL~~Hqes~laiA~WL~eqpeVar  280 (389)
T TIGR01324       216 TVAANEDAWEQLLGEASYLLGQSVDAD--DAYTVLRGLRTLGVRLKRHQESALAIAKWLEEQPEVAR  280 (389)
T ss_pred             HHHHHHHHHHHHCCHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             477557899875120244416434753--48888865656643257766668999986437996555


No 166
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=28.01  E-value=18  Score=16.15  Aligned_cols=24  Identities=21%  Similarity=0.538  Sum_probs=20.2

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCH
Q ss_conf             999987313479976999816535
Q gi|255764478|r   21 KVALQVGVNIQEGQHLIVMAPVSA   44 (418)
Q Consensus        21 ~llV~~~lniqkGe~VlI~~d~~a   44 (418)
                      ++|-+..+.|++||.|+.+.|..+
T Consensus        19 QvL~di~L~i~~GEiViltGPSGS   42 (220)
T TIGR02982        19 QVLFDINLEINPGEIVILTGPSGS   42 (220)
T ss_pred             EEECCCCEEECCCEEEEEECCCCC
T ss_conf             001276317717647984378898


No 167
>pfam00501 AMP-binding AMP-binding enzyme.
Probab=27.65  E-value=40  Score=13.74  Aligned_cols=52  Identities=15%  Similarity=0.118  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             99999999999873134799769998165358999999999998289886898727
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      .+.+++|..|.+  ++|++|+.|.|..+...+-+  .+.-++.++||-+|.+....
T Consensus         7 ~~v~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e~~--~~~lA~~~~G~v~v~l~~~~   58 (412)
T pfam00501         7 ERANRLAAALRA--LGVGPGDRVAILLPNSPEWV--VAILAVLKAGAAYVPLDPSY   58 (412)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHH--HHHHHHHHHCCEEEEECCCC
T ss_conf             999999999997--59599799999928989999--99999998696999848999


No 168
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753   Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor .    The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=27.61  E-value=40  Score=13.74  Aligned_cols=55  Identities=18%  Similarity=0.246  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf             999999999999987313479976999816535899-9999999998289886898
Q gi|255764478|r   12 DEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPL-ARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        12 ~~~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l-~ral~~aa~~~GA~~V~v~   66 (418)
                      .+++|+=|=+.+.+.=-=++|-=.++|-.|....+. -||+.++|.++||..|++.
T Consensus        80 Te~MlkYFI~~v~~rk~~~~P~P~~~icVP~GiT~VErRAV~esA~~AGAREV~lI  135 (337)
T TIGR00904        80 TEKMLKYFIKKVHSRKSFFRPKPRIVICVPSGITPVERRAVKESALSAGAREVYLI  135 (337)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             99999999999856775368987699985379986678999999850797078862


No 169
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=27.58  E-value=40  Score=13.73  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHHHHHHHH
Q ss_conf             999999987313479976999816535--89999999999
Q gi|255764478|r   18 KLAKVALQVGVNIQEGQHLIVMAPVSA--LPLARLITKHA   55 (418)
Q Consensus        18 kyA~llV~~~lniqkGe~VlI~~d~~a--~~l~ral~~aa   55 (418)
                      ++|+.+-+   .+++|+.|++..+..+  .-|+|.+.++.
T Consensus         3 ~lg~~ia~---~l~~G~vi~L~G~LGaGKTtfvr~i~~~l   39 (123)
T pfam02367         3 NLGKRLAQ---LLKAGDVVLLSGDLGAGKTTFVRGLAKGL   39 (123)
T ss_pred             HHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             99999997---68999799998887788999999999985


No 170
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.56  E-value=40  Score=13.73  Aligned_cols=49  Identities=20%  Similarity=0.165  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             99999999998731347997699981653589999999999982898868987
Q gi|255764478|r   15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      +.+++|--+  ..+.|++||+|+++-+-.++ |...+ =+..++|+-||....
T Consensus        62 r~d~LAa~l--~~lGi~~Gd~vlvQLpN~~e-f~~~~-FALlrlGv~PVlALp  110 (542)
T COG1021          62 RADRLAAGL--RRLGIKPGDTVLVQLPNVAE-FYITF-FALLRLGVAPVLALP  110 (542)
T ss_pred             HHHHHHHHH--HHCCCCCCCEEEEECCCHHH-HHHHH-HHHHHCCCCHHHCCC
T ss_conf             999998889--86288988779997796388-99999-999973750011161


No 171
>COG3665 Uncharacterized conserved protein [Function unknown]
Probab=27.47  E-value=40  Score=13.72  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=15.7

Q ss_pred             CEEEEEEEECCCCCHHHHCCCCCCEEEECCC
Q ss_conf             2687999866862001101200332320575
Q gi|255764478|r  320 RRLGEVALVPHSSLLSKMNTLFYDTLFDENA  350 (418)
Q Consensus       320 ~~igE~~ig~n~~~i~~~~~l~~n~L~DEk~  350 (418)
                      ..++-+||+. +..+.-.+ +|.||.+||+.
T Consensus       169 ~alA~~Gl~~-~~i~~~LN-~Fmnt~~de~g  197 (264)
T COG3665         169 VALAPYGLGE-PDIHTVLN-YFMNTGLDEEG  197 (264)
T ss_pred             HHHCCCCCCC-CCHHHHHH-HEEECCCCCCC
T ss_conf             8741257898-85321212-21761427788


No 172
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485    This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=27.13  E-value=41  Score=13.68  Aligned_cols=53  Identities=25%  Similarity=0.169  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHC--------CCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999987313--------47997699981-653589999999999982898868987
Q gi|255764478|r   15 LLEKLAKVALQVGVN--------IQEGQHLIVMA-PVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        15 ~L~kyA~llV~~~ln--------iqkGe~VlI~~-d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      +|++||+-|-.-||+        +-+-.---||. ...+.+-|-.=.++|.++|-.||-+++
T Consensus       102 LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~PVKlN~  163 (324)
T TIGR02668       102 LLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDAGLTPVKLNM  163 (324)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             48989999998285613120267886788864489986078999999999972898137888


No 173
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=26.68  E-value=41  Score=13.62  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH--HHHHHCCCCCCEEEECCHHHHH
Q ss_conf             999999999998731347997699981653589999999--9999828988689872748989
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLIT--KHAYMLGAGLVSVFYKDSEATL   74 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~--~aa~~~GA~~V~v~~~d~~~~r   74 (418)
                      .-|++.+..+++++-++...--=  -.|.+...=-..++  ...|+.|-.-..|.|+.++..-
T Consensus         7 ~dld~~~~~~~~~~~el~~dHPG--f~D~~Yr~RR~~ia~iA~~yk~G~piP~v~YT~~E~~t   67 (298)
T cd03345           7 SELDKCHHLVTKYEPDLDLDHPG--FSDKVYRERRKLIAEIAFQYKHGDPIPRVEYTAEEIAT   67 (298)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             89998860564058656789989--98889999999999999857789978776669899999


No 174
>PRK09255 malate synthase; Validated
Probab=26.64  E-value=41  Score=13.62  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=13.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             769998165358999999999998289886898727
Q gi|255764478|r   34 QHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        34 e~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      -.|-|+.|.+.     ..+-.|..-||+-++..+.|
T Consensus        88 RrVEITGP~dr-----km~inALNSgA~~~maDfED  118 (531)
T PRK09255         88 RRVEITGPVDR-----KMVINALNSGAKVFMADFED  118 (531)
T ss_pred             CEEEECCCCCH-----HHHHHHHCCCCCEEEECCCC
T ss_conf             70430078978-----99999864699789843665


No 175
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=26.32  E-value=42  Score=13.58  Aligned_cols=18  Identities=11%  Similarity=0.401  Sum_probs=13.8

Q ss_pred             CCEEEEEECCEEEEEECC
Q ss_conf             686999978899999854
Q gi|255764478|r  286 ENIRVRFDQGRVVEASAS  303 (418)
Q Consensus       286 ~~~~l~f~~G~vv~~~a~  303 (418)
                      ..++++|++|++|.+...
T Consensus        48 ~f~~iti~dGKiv~~~yd   65 (147)
T COG4939          48 AFVTITIQDGKIVACTYD   65 (147)
T ss_pred             CEEEEEEECCEEEEEEEE
T ss_conf             107999828879998855


No 176
>pfam09533 DUF2380 Predicted lipoprotein of unknown function (DUF2380). This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=26.30  E-value=42  Score=13.58  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             CCCCCCEEEEEECCCEEEEEEEEEEEECCCCEE
Q ss_conf             678631695131473418999700330354022
Q gi|255764478|r  253 NIPTEEVFTAPHARRVEGYATSTKPLVYQGMLI  285 (418)
Q Consensus       253 NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~  285 (418)
                      +||.|-|++-|.+++.-+.++-.-+-...|..+
T Consensus        98 ~lp~GavmvFpnW~gap~~~~~p~~~l~pGrw~  130 (220)
T pfam09533        98 GLPRGAVMVFPNWNGAPGRVIPPSPRLPPGRWE  130 (220)
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             789876797347688865322887888987330


No 177
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.24  E-value=42  Score=13.57  Aligned_cols=31  Identities=13%  Similarity=0.246  Sum_probs=22.8

Q ss_pred             HHHHHHCCCCCCEEEEECCCCH--HHHHHHHHH
Q ss_conf             9987313479976999816535--899999999
Q gi|255764478|r   23 ALQVGVNIQEGQHLIVMAPVSA--LPLARLITK   53 (418)
Q Consensus        23 lV~~~lniqkGe~VlI~~d~~a--~~l~ral~~   53 (418)
                      |=+.++.|.+||.+.|..+..+  .-|.+.+.-
T Consensus        23 L~~vsl~I~~Ge~~aiiG~nGsGKSTLl~~l~G   55 (286)
T PRK13646         23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA   55 (286)
T ss_pred             EECEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf             624177986998999999999819999999970


No 178
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.97  E-value=42  Score=13.54  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             HCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             1347997699981653589999999999982898868
Q gi|255764478|r   28 VNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVS   64 (418)
Q Consensus        28 lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~   64 (418)
                      |+.=+|.++||+.-....-+.+++.++..+.||+.++
T Consensus         1 Mg~L~gK~~lVTGa~~~~GIG~aia~~la~~Ga~v~~   37 (261)
T PRK08690          1 MGFLQGKKILITGMISERSIAYGIAKACREQGAELAF   37 (261)
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             9999998899989878638999999999985999999


No 179
>PRK06710 acyl-CoA synthetase; Validated
Probab=25.94  E-value=42  Score=13.53  Aligned_cols=50  Identities=12%  Similarity=0.149  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999999999998731347997699981653589999999999982898868987
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFY   67 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~   67 (418)
                      .+.+++|..|.  .++|++|+.|.|..+-..+-+ .++ -++.++||-+|.++.
T Consensus        57 ~~~~~lA~~L~--~~Gv~~GdrVai~~~n~~e~v-i~~-lA~~~~Gav~vpi~~  106 (563)
T PRK06710         57 DKVKRFANYLQ--KLGVEKGDRVAIMLPNCPQAV-IGY-YGTLLAGGIVVQTNP  106 (563)
T ss_pred             HHHHHHHHHHH--HCCCCCCCEEEEEECCCHHHH-HHH-HHHHHHCEEEEEECC
T ss_conf             99999999999--759599799999928979999-999-999985959983389


No 180
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=25.84  E-value=43  Score=13.52  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=12.1

Q ss_pred             CEECCCC---CCCCCCCCCCCCHHHHHHCC
Q ss_conf             4122677---50003676678834432069
Q gi|255764478|r  353 HIAFGQC---YSKCFKKPDNALDNWLEERG  379 (418)
Q Consensus       353 H~A~G~~---y~~~~~~~~~~~~~~~~~~g  379 (418)
                      |++++..   || |+-|=+-.++++|-+.+
T Consensus       380 HvriasP~i~~P-c~YGID~pt~~eLIA~~  408 (470)
T COG0034         380 HVRIASPPIRYP-CFYGIDMPTREELIAAN  408 (470)
T ss_pred             EEEECCCCCCCC-CCCCCCCCCHHHHHHCC
T ss_conf             998428975677-86645789989996478


No 181
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=25.41  E-value=43  Score=13.47  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=29.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf             1653589999999999982898868987274898997605
Q gi|255764478|r   40 APVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKY   79 (418)
Q Consensus        40 ~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~   79 (418)
                      +++...||++.+++.|.+.|+..|.|--.|+.+-..--.+
T Consensus        23 adI~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~   62 (247)
T COG1212          23 ADIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAF   62 (247)
T ss_pred             HHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf             7737960789999999873787289974988999999970


No 182
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=25.37  E-value=43  Score=13.46  Aligned_cols=17  Identities=18%  Similarity=0.190  Sum_probs=9.7

Q ss_pred             CCCCCCCCCCCCEEEEE
Q ss_conf             97146867863169513
Q gi|255764478|r  247 GIMCNPNIPTEEVFTAP  263 (418)
Q Consensus       247 G~~~~~NlP~GEVftaP  263 (418)
                      |-.+...++.||+.+--
T Consensus       220 g~~~irdv~PGEiv~I~  236 (472)
T PRK05793        220 GAEFVRDIEPGEIVIID  236 (472)
T ss_pred             CCEEEEECCCCEEEEEE
T ss_conf             86699816997499995


No 183
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=24.97  E-value=44  Score=13.41  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=9.1

Q ss_pred             HHHHHHHCCCCCCEEEECCHHHH
Q ss_conf             99999982898868987274898
Q gi|255764478|r   51 ITKHAYMLGAGLVSVFYKDSEAT   73 (418)
Q Consensus        51 l~~aa~~~GA~~V~v~~~d~~~~   73 (418)
                      |.++..+.|++  +-.-+|.++-
T Consensus       139 Lr~~L~~~G~~--F~s~sDsEvi  159 (495)
T PRK07349        139 LREELLARGCE--LTTTTDSEMI  159 (495)
T ss_pred             HHHHHHHCCCC--CCCCCCHHHH
T ss_conf             99999967997--6567608999


No 184
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase; InterPro: IPR011904   Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) is a ubiquitous enzyme, found in both prokaryotes and eukaryotes, which catalyses the formation of acetyl-CoA from acetate, coenzyme A (CoA) and ATP as shown below : ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. It is especially important in eukayotic species as it is the only route for the activation of acetate to acetyl-CoA in these organisms (some prokaryotic species can also activate acetate by either acetate kinase/phosphotransacetylase or by ADP-forming acetyl-CoA synthase). Eukaryotes typically have two isoforms of acetyl-CoA synthase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation.   The crystal structures of a eukaryotic (Q01574 from SWISSPROT, from yeast) and bacterial (Q8ZKF6 from SWISSPROT, from Salmonella) form of this enzyme have been determined , . The yeast enzyme is trimeric, while the bacterial enzyme is monomeric. The trimeric state of the yeast protein may be unique to this organism however, as the residues involved in the trimer interface are poorly conserved in other sequences. Despite differences in the oligomeric state of the two enzyme, the structures of the monomers are almost identical. A large N-terminal domain (~500 residues) containing two parallel beta sheets is followed by a small (~110 residues) C-terminal domain containing a three-stranded beta sheet with helices. The active site occurs at the domain interface, with its contents determining the orientation of the C-terminal domain.; GO: 0003987 acetate-CoA ligase activity, 0016208 AMP binding.
Probab=24.88  E-value=44  Score=13.40  Aligned_cols=262  Identities=15%  Similarity=0.180  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf             99999999998731347997699981653589999999999982898868987274898997605987898624336799
Q gi|255764478|r   15 LLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCE   94 (418)
Q Consensus        15 ~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~~p~~~~~   94 (418)
                      ...|.|.+|-   +.|||||.|.|--|...+-.+--  -|+-+.||-.-+|+-                  .|-|+-+.+
T Consensus       105 ~Vcr~An~LK---~GvkkGD~V~IYmPMiPEa~~AM--LACaRIGA~HSVVFg------------------GFSa~aL~~  161 (643)
T TIGR02188       105 EVCRFANVLK---LGVKKGDRVAIYMPMIPEAAIAM--LACARIGAIHSVVFG------------------GFSAEALAD  161 (643)
T ss_pred             HHHHHHHHHH---CCCCCCCEEEEECCCCHHHHHHH--HHHHHCCCEEEEECC------------------CCCHHHHHH
T ss_conf             9999999974---47646887899578818999999--886436852678725------------------774789988


Q ss_pred             HHHHHHHCCCEEEEEECCC-CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEECCCH----HHHHHH
Q ss_conf             9999984797899981597-324307998899988898899989999998458-----873599965998----999873
Q gi|255764478|r   95 GLAKAYSDNTALLSISGDN-PLLLVNEDSDKVSRVNQAYLKAYKPALERISNF-----DINWSIVPFPSC----AWAEIV  164 (418)
Q Consensus        95 ~~~~~~~~~~a~i~i~~~n-p~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~-----~~~W~i~~~Pt~----awA~~v  164 (418)
                      +    +.+..|.+.|+++. ..-=+-++-+             +.+.+++...     .+.=||+.-=|-    .|.+  
T Consensus       162 R----i~Da~ak~VITAD~g~RgGK~~~LK-------------~~VD~AL~~~~~~~~~V~~VlV~~RtG~~~~~w~~--  222 (643)
T TIGR02188       162 R----INDAGAKLVITADEGLRGGKVIPLK-------------AIVDEALEKCPDTCPSVEKVLVVRRTGGPVVPWVE--  222 (643)
T ss_pred             H----HHCCCCCEEEECCCCCCCCCCCCHH-------------HHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC--
T ss_conf             7----5327775899437740588643036-------------89999996078674530067899855888777548--


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHH--HHHCCCCEEEEEEECCCCEEEEEECCCCEECCCC
Q ss_conf             68999778999999999999742665979999999999-99999--9730168479999769964999955882622788
Q gi|255764478|r  165 YPDDPVPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNF-LHQKS--QWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGS  241 (418)
Q Consensus       165 fp~~~~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~-~~~~~--~~Ln~~~~~~i~~~~~gTDLt~~l~~~~~w~~~~  241 (418)
                                              +-|  --|.++.+. +...+  +.||.=+--=|-||| |+   -+-++|=.+.-+|
T Consensus       223 ------------------------GRD--~wwh~l~~~~~~~~c~Pe~m~sEDPLFiLYTS-GS---TGKPKGv~HttgG  272 (643)
T TIGR02188       223 ------------------------GRD--VWWHELVAKGQSAECEPEPMDSEDPLFILYTS-GS---TGKPKGVLHTTGG  272 (643)
T ss_pred             ------------------------CCC--CHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC-CC---CCCCCCCEECCHH
T ss_conf             ------------------------887--60689853788782465417876602676347-87---7888721434177


Q ss_pred             -----CCCCCCCCCCCCCCCCCEEEE-EECCCEEEEEEEE-EEEE-------CCCCEEC----CEEEEEECCEEEE-EEC
Q ss_conf             -----602589714686786316951-3147341899970-0330-------3540226----8699997889999-985
Q gi|255764478|r  242 -----SIAQNGIMCNPNIPTEEVFTA-PHARRVEGYATST-KPLV-------YQGMLIE----NIRVRFDQGRVVE-ASA  302 (418)
Q Consensus       242 -----~~~~~G~~~~~NlP~GEVfta-P~~~~vnG~i~~d-~p~~-------~~G~~~~----~~~l~f~~G~vv~-~~a  302 (418)
                           ..+.+= .|  .+=.+.||++ =+-+=|-|+=|+= |||.       |-|...-    =++=.+|+=+|+. |+|
T Consensus       273 Yll~a~~T~k~-VF--D~~d~D~fWCTADvGWiTGHSYiVYGPL~~GAT~~mfEG~P~YP~~~R~W~~iekh~vtiFYTA  349 (643)
T TIGR02188       273 YLLYAAMTMKY-VF--DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWEIIEKHKVTIFYTA  349 (643)
T ss_pred             HHHHHHCCEEE-EE--ECCCCCEEEEECCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEECC
T ss_conf             99887321467-64--0379962686211200205324012422115317874377833278767855331576503315


Q ss_pred             CCHHHHHHHHH----H-CCCCCCE-EEEEEEECCCCCHHHHCCCCCCEEEECCCCC-CEECCCCC
Q ss_conf             43799999886----4-2898526-8799986686200110120033232057526-41226775
Q gi|255764478|r  303 SKGEEMLNKIL----D-IDEGARR-LGEVALVPHSSLLSKMNTLFYDTLFDENAAS-HIAFGQCY  360 (418)
Q Consensus       303 ~~~~~~l~~~l----~-~d~~a~~-igE~~ig~n~~~i~~~~~l~~n~L~DEk~~~-H~A~G~~y  360 (418)
                      .--=+.|.++=    + .|--+.| ||=||=--||.|=     .-    |-++++. .+.+.+=|
T Consensus       350 PTAIR~L~r~G~~~~~k~DlSSLR~LGSVGEPINPEAW-----~W----Y~~~vG~~~CpiVDTW  405 (643)
T TIGR02188       350 PTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAW-----MW----YYKVVGKERCPIVDTW  405 (643)
T ss_pred             HHHHHHHHHHCCHHHHHCCCCCEEECCCCCCCCCHHHH-----HH----HHHCCCCCEEEEECCC
T ss_conf             68999998611121344176400150256888764478-----89----9870489520076165


No 185
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IPR010031   This entry identifies a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesising ascorbic acid or a derivative. These include L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by IPR006093 from INTERPRO.; GO: 0016899 oxidoreductase activity acting on the CH-OH group of donors oxygen as acceptor, 0009058 biosynthetic process.
Probab=24.87  E-value=44  Score=13.40  Aligned_cols=60  Identities=17%  Similarity=0.377  Sum_probs=36.9

Q ss_pred             CCCEEEEEEEE--EEEECCCCE---ECCEEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf             47341899970--033035402---2686999978899999854379999988642898526879998668
Q gi|255764478|r  265 ARRVEGYATST--KPLVYQGML---IENIRVRFDQGRVVEASASKGEEMLNKILDIDEGARRLGEVALVPH  330 (418)
Q Consensus       265 ~~~vnG~i~~d--~p~~~~G~~---~~~~~l~f~~G~vv~~~a~~~~~~l~~~l~~d~~a~~igE~~ig~n  330 (418)
                      +.||-|+|..-  ++..++|.|   +..++|---||.|+.++.+...|.++.-.      -.||-+||-..
T Consensus       113 e~sVaGiistgtHgss~~Hg~l~~q~v~lti~~adGe~~~cs~e~~~dvF~AA~------vslG~lGiIv~  177 (505)
T TIGR01678       113 EVSVAGIISTGTHGSSLKHGVLASQVVALTIMLADGEVLECSEERDKDVFKAAR------VSLGALGIIVD  177 (505)
T ss_pred             CCEECCEEECCCCCCCCCCCHHHHEEEEEEEEECCCCEEEECCCCCHHHHHHHH------HCCCCEEEEEE
T ss_conf             431211550374687653332440333345670477578602204856888986------41562478999


No 186
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.81  E-value=44  Score=13.39  Aligned_cols=43  Identities=16%  Similarity=0.280  Sum_probs=34.2

Q ss_pred             HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             31347997699981653589999999999982898868987274
Q gi|255764478|r   27 GVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        27 ~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      +-.+=+|-++||+.-....-+.+++.+...+.||+ |.+.++++
T Consensus         4 ~~g~L~GK~alITGaag~~GIG~aiA~~la~~GA~-V~i~~~~~   46 (272)
T PRK08159          4 ASGLMQGKRGLILGVANNRSIAWGIAKACRAAGAE-LAFTYQGD   46 (272)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCH
T ss_conf             87235899999988999868999999999986999-99974866


No 187
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=24.74  E-value=45  Score=13.38  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=10.4

Q ss_pred             HHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf             99999886428985268799986
Q gi|255764478|r  306 EEMLNKILDIDEGARRLGEVALV  328 (418)
Q Consensus       306 ~~~l~~~l~~d~~a~~igE~~ig  328 (418)
                      .....++++. -|+.-+|=+.+.
T Consensus       129 ~~a~~~Lv~~-~ga~v~~~~~li  150 (174)
T PRK02304        129 LEAAIKLLER-LGAEVVGAAFVI  150 (174)
T ss_pred             HHHHHHHHHH-CCCEEEEEEEEE
T ss_conf             9999999998-799899999999


No 188
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=24.71  E-value=45  Score=13.38  Aligned_cols=56  Identities=21%  Similarity=0.214  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHCCCCC-------CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             9999999999873134799-------7699981653589999999999982898868987274
Q gi|255764478|r   15 LLEKLAKVALQVGVNIQEG-------QHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDS   70 (418)
Q Consensus        15 ~L~kyA~llV~~~lniqkG-------e~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~   70 (418)
                      ..+-+.+.++..+-++|=|       -.=||+.+-.-.+|.....+.|.+.||+.+++.+-..
T Consensus        28 TVeDL~ealvt~vP~~kfgiAf~EAsg~rLvR~~GND~eL~klA~ena~~I~AGHvFVI~lrn   90 (162)
T COG1839          28 TVEDLYEALVTAVPGLKFGIAFNEASGPRLVRYTGNDEELVKLAIENALKIGAGHVFVILLRN   90 (162)
T ss_pred             EHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             198899999713888548888611468716884288399999999999876378389999528


No 189
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=24.67  E-value=45  Score=13.38  Aligned_cols=48  Identities=17%  Similarity=0.150  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             9999999999987313479976999816535899999999999828988689
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSV   65 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v   65 (418)
                      .+.+++|.-|.  .++|++|+.|.|.++-..+-++ +. -++.++||-.|.+
T Consensus        76 ~~v~~lA~~L~--alGv~~GDrVail~~N~~e~~~-~~-lA~~~~Gav~vPv  123 (612)
T PRK08180         76 ERVRAIAQALL--DRGLSAERPLMILSGNSIEHAL-LA-LAAMYAGVPYAPV  123 (612)
T ss_pred             HHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHHH-HH-HHHHHHCEEEEEC
T ss_conf             99999999999--7696997999998998599999-99-9999739099860


No 190
>KOG0056 consensus
Probab=24.31  E-value=45  Score=13.33  Aligned_cols=72  Identities=19%  Similarity=0.484  Sum_probs=46.1

Q ss_pred             EEECCCEEEEEEEEE-EEECC-CCE-ECCEEEEEECCEEEEEECCCHH------HHHHHHHHCCCCCCEEE---------
Q ss_conf             131473418999700-33035-402-2686999978899999854379------99998864289852687---------
Q gi|255764478|r  262 APHARRVEGYATSTK-PLVYQ-GML-IENIRVRFDQGRVVEASASKGE------EMLNKILDIDEGARRLG---------  323 (418)
Q Consensus       262 aP~~~~vnG~i~~d~-p~~~~-G~~-~~~~~l~f~~G~vv~~~a~~~~------~~l~~~l~~d~~a~~ig---------  323 (418)
                      ||......|.|.|+- ...|. |+. ..++.+++..|+++..-|+.|.      ++|-++++...|+-.+-         
T Consensus       528 a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~  607 (790)
T KOG0056         528 APPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ  607 (790)
T ss_pred             CCCCCCCCCEEEEEEEEEECCCCCCEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf             99733057708998767864899861232148856996899977898866689999999940557608986701788879


Q ss_pred             -----EEEEECCCCC
Q ss_conf             -----9998668620
Q gi|255764478|r  324 -----EVALVPHSSL  333 (418)
Q Consensus       324 -----E~~ig~n~~~  333 (418)
                           .+|++|.++.
T Consensus       608 ~SLRs~IGVVPQDtv  622 (790)
T KOG0056         608 SSLRSSIGVVPQDTV  622 (790)
T ss_pred             HHHHHHCCCCCCCCE
T ss_conf             989975683567513


No 191
>TIGR01439 lp_hng_hel_AbrB transcriptional regulator, AbrB family; InterPro: IPR006339   This DNA-binding domain is found in proteins like AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. .
Probab=24.25  E-value=46  Score=13.32  Aligned_cols=17  Identities=24%  Similarity=0.513  Sum_probs=13.8

Q ss_pred             HHHHHCCCCCCEEEEEC
Q ss_conf             98731347997699981
Q gi|255764478|r   24 LQVGVNIQEGQHLIVMA   40 (418)
Q Consensus        24 V~~~lniqkGe~VlI~~   40 (418)
                      |+.-|||++|+.|.|..
T Consensus        16 iR~~lgl~eGd~l~~~~   32 (44)
T TIGR01439        16 IREKLGLKEGDKLEVIR   32 (44)
T ss_pred             HHHHCCCCCCCEEEEEE
T ss_conf             96406999998788988


No 192
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=24.13  E-value=46  Score=13.31  Aligned_cols=60  Identities=7%  Similarity=0.060  Sum_probs=29.6

Q ss_pred             EEEEECCCCE--EEEEECCCCEECCCCCCCCC---CC-CCCC-----CCCCCCEEEEEE-CCCEEEEEEEEE
Q ss_conf             9999769964--99995588262278860258---97-1468-----678631695131-473418999700
Q gi|255764478|r  217 EIRFSGPNTS--LKVGLAEGHRWSGGSSIAQN---GI-MCNP-----NIPTEEVFTAPH-ARRVEGYATSTK  276 (418)
Q Consensus       217 ~i~~~~~gTD--Lt~~l~~~~~w~~~~~~~~~---G~-~~~~-----NlP~GEVftaP~-~~~vnG~i~~d~  276 (418)
                      ++.+=+|+=.  +-|..+-.-.|.....+...   .. ++.+     =-+.|+-|.-.. -+++.|.+..|.
T Consensus       142 eI~IGtp~Q~F~VIFDTGSSnLWVPS~~C~s~aC~~h~rYdsskSSTy~~~G~~f~I~YGSGsv~G~ls~Dt  213 (450)
T PTZ00013        142 EGEIGDNHQKFMFIFDTGSANLWVPSKKCDSIGCSIKHLYDASASKSYEKDGTKVDISYGSGTVKGFFSKDL  213 (450)
T ss_pred             EEEECCCCCEEEEEECCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCEEECCEEEEEEECCCEEEEEEEEEE
T ss_conf             988679997479998578756020889999836677687886458770769979999988847999998559


No 193
>PTZ00059 dynein light chain; Provisional
Probab=23.87  E-value=46  Score=13.27  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=12.5

Q ss_pred             EEECCCCC--CEECCCCCCCC
Q ss_conf             32057526--41226775000
Q gi|255764478|r  345 LFDENAAS--HIAFGQCYSKC  363 (418)
Q Consensus       345 L~DEk~~~--H~A~G~~y~~~  363 (418)
                      =||+|-++  |.-+|.+|..+
T Consensus        46 ~fD~kyg~~WhcVVGk~FGs~   66 (90)
T PTZ00059         46 EFDKKYNPTWHCIVGRNFGSY   66 (90)
T ss_pred             HHHCCCCCEEEEEECCCCEEE
T ss_conf             975744992499996770468


No 194
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=23.45  E-value=47  Score=13.22  Aligned_cols=59  Identities=17%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH--HHHCCCCCCEEEECCHHHHH
Q ss_conf             99999999999873134799769998165358999999999--99828988689872748989
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKH--AYMLGAGLVSVFYKDSEATL   74 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~a--a~~~GA~~V~v~~~d~~~~r   74 (418)
                      .-|++.+..++.++-++...--=  -.|.+...=-..+++-  .|+.|-....|.|+.++..-
T Consensus         8 ~dld~~~~~~~~~~~el~~dHPg--f~D~~Yr~RR~~ia~~A~~yk~G~piP~veYT~~E~~t   68 (287)
T cd03346           8 SDLDKCANRVLMYGSELDADHPG--FKDNVYRKRRKYFADVAMNYKHGDPIPRVEYTEEEIKT   68 (287)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             99998850664057646789989--98879999999999999757789978787769899999


No 195
>PTZ00147 histoaspartic protease (plasmepsin I or II); Provisional
Probab=23.41  E-value=47  Score=13.22  Aligned_cols=61  Identities=8%  Similarity=0.158  Sum_probs=30.8

Q ss_pred             EEEEEECCCCE--EEEEECCCCEECCCCCCCCCC---C-CCCC-----CCCCCCEEEEEE-CCCEEEEEEEEE
Q ss_conf             79999769964--999955882622788602589---7-1468-----678631695131-473418999700
Q gi|255764478|r  216 AEIRFSGPNTS--LKVGLAEGHRWSGGSSIAQNG---I-MCNP-----NIPTEEVFTAPH-ARRVEGYATSTK  276 (418)
Q Consensus       216 ~~i~~~~~gTD--Lt~~l~~~~~w~~~~~~~~~G---~-~~~~-----NlP~GEVftaP~-~~~vnG~i~~d~  276 (418)
                      =++.+=+|+=.  +-|..+-.-.|.....++..+   . ++.+     =-|.|.-|.-.. -+++.|.+..|.
T Consensus       142 GeI~IGtp~Q~F~VIFDTGSSnLWVPS~~C~s~aC~~h~rYdsskSSTy~~~G~~f~I~YGSGsvsG~ls~Dt  214 (453)
T PTZ00147        142 GEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGTVSGFFSKDL  214 (453)
T ss_pred             EEEEECCCCCEEEEEECCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCEEECCEEEEEEECCCEEEEEEEEEE
T ss_conf             9987679997479998578757040889989847677687985458780769989999977628999999789


No 196
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.36  E-value=47  Score=13.21  Aligned_cols=12  Identities=8%  Similarity=0.288  Sum_probs=5.8

Q ss_pred             HHHCCCEEEEEE
Q ss_conf             984797899981
Q gi|255764478|r   99 AYSDNTALLSIS  110 (418)
Q Consensus        99 ~~~~~~a~i~i~  110 (418)
                      .++.+|+.+.+.
T Consensus        44 ~~~~~D~vi~iS   55 (87)
T cd04795          44 LLRKGDVVIALS   55 (87)
T ss_pred             CCCCCCEEEEEE
T ss_conf             378999899997


No 197
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.28  E-value=47  Score=13.20  Aligned_cols=40  Identities=23%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             3479976999816535899999999999828988689872
Q gi|255764478|r   29 NIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYK   68 (418)
Q Consensus        29 niqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~   68 (418)
                      ++=+|.++||+......-+.+++.+.+.+.||+.++....
T Consensus         3 g~L~GK~~lVTG~~~~~GIG~a~A~~la~~GA~Vvi~~~~   42 (256)
T PRK07889          3 GLLEGKRILVTGVITDSSIAFHIARVAQEQGAEVVLTGFR   42 (256)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             7149997999899885689999999999879999998389


No 198
>KOG0058 consensus
Probab=22.88  E-value=48  Score=13.15  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=42.4

Q ss_pred             CCCCCCEEEEEECCCEEEEEEEE-----EEEECCCCEECCEEEEEECCEEEEEECCCH--HHHHHHHHH--CCCCCCE
Q ss_conf             67863169513147341899970-----033035402268699997889999985437--999998864--2898526
Q gi|255764478|r  253 NIPTEEVFTAPHARRVEGYATST-----KPLVYQGMLIENIRVRFDQGRVVEASASKG--EEMLNKILD--IDEGARR  321 (418)
Q Consensus       253 NlP~GEVftaP~~~~vnG~i~~d-----~p~~~~G~~~~~~~l~f~~G~vv~~~a~~~--~~~l~~~l~--~d~~a~~  321 (418)
                      .||-- --..|+  .+.|.|.|.     +|.-+.-.+.+++.|+++-|++|-.-|..|  .-.+.++|.  .||.+-+
T Consensus       450 ~i~~~-G~~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~  524 (716)
T KOG0058         450 RIPLT-GTLAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR  524 (716)
T ss_pred             CCCCC-CCCCCC--CCCCEEEEEEEEEECCCCCCCHHHCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf             78998-861665--4443289987454069998751322834640799779998899988899999999736888873


No 199
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=22.88  E-value=48  Score=13.15  Aligned_cols=129  Identities=15%  Similarity=0.160  Sum_probs=66.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHH
Q ss_conf             699999999999999873134799769998165--358999999999998289886898727489899760598789862
Q gi|255764478|r   10 HVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDR   87 (418)
Q Consensus        10 ~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~   87 (418)
                      ..+...+.++|     .|-=|..+++|++..+.  ...-|+.|+..++.+.|-+..++. ..+-+++++-..... .+  
T Consensus        29 ~~~~~~i~~L~-----~~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~-~~~L~~~l~~~~~~~-~~--   99 (178)
T pfam01695        29 GLDRRLIAELA-----GLDWIEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTR-TPDLVEQLKRARGDG-RL--   99 (178)
T ss_pred             CCCHHHHHHHH-----CCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-CHHHHHHHHHHHHCC-CH--
T ss_conf             98999999885-----5974215876899899998789999999999998698599996-167999999875267-49--


Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EECCCHHHHHHHCC
Q ss_conf             43367999999984797899981597324307998899988898899989999998458873599-96599899987368
Q gi|255764478|r   88 VADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSI-VPFPSCAWAEIVYP  166 (418)
Q Consensus        88 ~p~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i-~~~Pt~awA~~vfp  166 (418)
                            +.....+...+..|. .     .+--.+...     ......+..+..|-.  +.+..| ..+|-..|-+. |+
T Consensus       100 ------~~~l~~~~~~dlLIi-D-----DlG~~~~s~-----~~~~~lf~li~~Rye--~~stIiTSN~~~~~W~~~-~~  159 (178)
T pfam01695       100 ------ARTLQRLAKADLLIL-D-----DIGYLPLSQ-----EAAHLLFELISDRYE--RRSTILTSNLPFGEWHEV-FG  159 (178)
T ss_pred             ------HHHHHHHHCCCEEEE-E-----HHCCCCCCH-----HHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHH-CC
T ss_conf             ------999999625897887-2-----001656898-----999999999999975--688687768997899876-48


Q ss_pred             C
Q ss_conf             9
Q gi|255764478|r  167 D  167 (418)
Q Consensus       167 ~  167 (418)
                      |
T Consensus       160 d  160 (178)
T pfam01695       160 D  160 (178)
T ss_pred             C
T ss_conf             7


No 200
>KOG0890 consensus
Probab=22.83  E-value=48  Score=13.15  Aligned_cols=164  Identities=15%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             EEEECCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC--CCEE
Q ss_conf             9996599899987368-999778999999999999742665979999999999999999730168479999769--9649
Q gi|255764478|r  151 SIVPFPSCAWAEIVYP-DDPVPIAIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGP--NTSL  227 (418)
Q Consensus       151 ~i~~~Pt~awA~~vfp-~~~~~~s~~~l~~~if~a~~~d~~Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~--gTDL  227 (418)
                      ++.+||.+++=+...- .=.--+..++..+ |+.-.+....|+...-..-.+..+++.+.-|+.-  .-..+..  .||+
T Consensus      1920 l~~~YPqq~lW~~~a~~kS~~p~R~~R~ke-IL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v--~~ss~~~sl~t~F 1996 (2382)
T KOG0890        1920 LVLAYPQQTLWQSAALSKSNVPSRVERCKE-ILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKV--NSSSKVLSLKTDF 1996 (2382)
T ss_pred             HHHHCCHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHH
T ss_conf             999684678999999983554889999999-9999875376689999889999999999964887--7320236488898


Q ss_pred             EEEECCCCEECCCCCCCCCCCCCCCCCCCCCEE---EEEECCCEEE---EEE-EEEEEECCCCEECC--EEEEEECCEEE
Q ss_conf             999558826227886025897146867863169---5131473418---999-70033035402268--69999788999
Q gi|255764478|r  228 KVGLAEGHRWSGGSSIAQNGIMCNPNIPTEEVF---TAPHARRVEG---YAT-STKPLVYQGMLIEN--IRVRFDQGRVV  298 (418)
Q Consensus       228 t~~l~~~~~w~~~~~~~~~G~~~~~NlP~GEVf---taP~~~~vnG---~i~-~d~p~~~~G~~~~~--~~l~f~~G~vv  298 (418)
                      . .+.+.+...+.-. .-.+ .+.|-+|+----   -+|.+ ...|   +|. |+-.+--...+-.|  +.|+=.||++.
T Consensus      1997 ~-kl~~~~~~s~ili-P~~~-~M~ptlP~~~~~~~~h~~~~-~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y 2072 (2382)
T KOG0890        1997 R-KLVMNRRFSDILI-PLQS-IMDPTLPLIDNNHATHSPFP-PFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKIY 2072 (2382)
T ss_pred             H-HHCCCCCHHHHHH-HHHH-HCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHCCHHHHHHHHHCCCCEEEEEECCCCCEE
T ss_conf             9-8603357155630-1765-11642346667644568899-88775204525327999998415881799975788776


Q ss_pred             EEECCCHHH------------HHHHHHHCCCCCCE
Q ss_conf             998543799------------99988642898526
Q gi|255764478|r  299 EASASKGEE------------MLNKILDIDEGARR  321 (418)
Q Consensus       299 ~~~a~~~~~------------~l~~~l~~d~~a~~  321 (418)
                      .+=|..-.|            +.+++|..|+-+|+
T Consensus      2073 ~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRr 2107 (2382)
T KOG0890        2073 PFLCKPKDDLRKDARLMEFNELINKLLRKDQESRR 2107 (2382)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             78757556554566899999999999853778764


No 201
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107   This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms .   Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium  and Gram-positive bacterium .   A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=22.81  E-value=33  Score=14.31  Aligned_cols=17  Identities=24%  Similarity=0.272  Sum_probs=5.5

Q ss_pred             CCCCCEEEEEECCCEEE
Q ss_conf             78631695131473418
Q gi|255764478|r  254 IPTEEVFTAPHARRVEG  270 (418)
Q Consensus       254 lP~GEVftaP~~~~vnG  270 (418)
                      ||.+=||=.=..++...
T Consensus       308 LPeELiF~vnYLGg~~~  324 (493)
T TIGR01788       308 LPEELIFHVNYLGGDEP  324 (493)
T ss_pred             CHHHCEEECCCCCCCCC
T ss_conf             70131110110266565


No 202
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.77  E-value=44  Score=13.42  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=25.8

Q ss_pred             CCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCEECCEEE--------EEECCEEEEEEC
Q ss_conf             6867863169513147341899970033035402268699--------997889999985
Q gi|255764478|r  251 NPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRV--------RFDQGRVVEASA  302 (418)
Q Consensus       251 ~~NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~~~~~~l--------~f~~G~vv~~~a  302 (418)
                      +.|||..|+|+.|  +++-|-+....+....|.+-.+++.        ++..|.|--++.
T Consensus       179 f~~iP~~e~yIf~--g~~P~~~~~~~~~~~~g~~p~~~~~~l~~q~P~~~~GG~v~ivDs  236 (367)
T TIGR03404       179 FDNLPLKELYIFP--GTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQVPGGTVRIADS  236 (367)
T ss_pred             HHCCCCCCCEECC--CCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCEECCCCEEEEECC
T ss_conf             8338976631615--889995010236788888776636762458977658963998317


No 203
>KOG2795 consensus
Probab=22.33  E-value=40  Score=13.69  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=21.8

Q ss_pred             ECCCEEEEEEEEEEEECCCCEECCEEEEEECCEEEEEECC
Q ss_conf             1473418999700330354022686999978899999854
Q gi|255764478|r  264 HARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASAS  303 (418)
Q Consensus       264 ~~~~vnG~i~~d~p~~~~G~~~~~~~l~f~~G~vv~~~a~  303 (418)
                      ....+.=++++.+-.+++-...+.+..+|.  +.+=++|.
T Consensus       189 i~tdA~~IlIVEKeavFqrL~~d~~~~~~~--~~ilITgK  226 (372)
T KOG2795         189 ITTDAKFILIVEKEAVFQRLAEDNFFNTFN--RCILITGK  226 (372)
T ss_pred             HHCCCEEEEEEEHHHHHHHHHHHHHHHHCC--CEEEEECC
T ss_conf             432131899995078999999999874157--72899638


No 204
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=22.31  E-value=49  Score=13.07  Aligned_cols=19  Identities=16%  Similarity=0.337  Sum_probs=8.6

Q ss_pred             EEEEEECCC--HHHHHHHHHH
Q ss_conf             999998543--7999998864
Q gi|255764478|r  296 RVVEASASK--GEEMLNKILD  314 (418)
Q Consensus       296 ~vv~~~a~~--~~~~l~~~l~  314 (418)
                      +||+++--+  |.+.+..+++
T Consensus       231 ~IvSIeM~EhVG~~~~~~yF~  251 (383)
T PRK11705        231 RIVSVGMFEHVGPKNYRTYFE  251 (383)
T ss_pred             EEEEEEHHHHCCHHHHHHHHH
T ss_conf             599971486528777999999


No 205
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=22.23  E-value=50  Score=13.06  Aligned_cols=12  Identities=25%  Similarity=0.202  Sum_probs=5.1

Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999998289
Q gi|255764478|r   49 RLITKHAYMLGA   60 (418)
Q Consensus        49 ral~~aa~~~GA   60 (418)
                      ..|.+...+.|.
T Consensus       108 ~eLr~~L~~~G~  119 (489)
T PRK07847        108 AELAARARDLGL  119 (489)
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999996687


No 206
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=22.05  E-value=50  Score=13.04  Aligned_cols=90  Identities=10%  Similarity=0.081  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHHHHH
Q ss_conf             699999999999999873134799769998165--358999999999998289886898727489899760598789862
Q gi|255764478|r   10 HVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPV--SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDR   87 (418)
Q Consensus        10 ~m~~~~L~kyA~llV~~~lniqkGe~VlI~~d~--~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~~a~~e~l~~   87 (418)
                      .|+.....+++.-+.++.-+-.++.+|+|-.|.  .+..|.+++.......|.+.+....            .|--.+  
T Consensus        14 ~lt~~~~~~~g~a~~~~l~~~~~~~~VvVg~D~R~~s~~~~~~~a~gl~s~G~~V~~~g~------------~pTP~~--   79 (445)
T cd05803          14 GLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVIDLGI------------APTPTV--   79 (445)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCC------------CCHHHH--
T ss_conf             979999999999999999974899849999699866899999999999977984998898------------873899--


Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEECC-CCHHHCCC
Q ss_conf             4336799999998479789998159-73243079
Q gi|255764478|r   88 VADWFCEGLAKAYSDNTALLSISGD-NPLLLVNE  120 (418)
Q Consensus        88 ~p~~~~~~~~~~~~~~~a~i~i~~~-np~~l~~v  120 (418)
                            . +.-.....++-|.|+++ ||....++
T Consensus        80 ------~-~~v~~~~~~~GI~ITASHNP~~~NGi  106 (445)
T cd05803          80 ------Q-VLVRQSQASGGIIITASHNPPQWNGL  106 (445)
T ss_pred             ------H-HHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf             ------9-99985599858999957888422442


No 207
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=21.61  E-value=51  Score=12.98  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=18.9

Q ss_pred             EEEEECCEEEE-EECCCHHHHHHHHHH
Q ss_conf             99997889999-985437999998864
Q gi|255764478|r  289 RVRFDQGRVVE-ASASKGEEMLNKILD  314 (418)
Q Consensus       289 ~l~f~~G~vv~-~~a~~~~~~l~~~l~  314 (418)
                      -+-|++|+.++ +.|...++.|+++|+
T Consensus        70 ~~~f~~G~~v~~~~G~~~~~~l~~~le   96 (96)
T cd02956          70 VYLFAAGQPVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             EEEEECCEEEEEEECCCCHHHHHHHHC
T ss_conf             888999999457718999999999769


No 208
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=21.59  E-value=51  Score=12.97  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=14.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             769998165358999999999998289886898727
Q gi|255764478|r   34 QHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKD   69 (418)
Q Consensus        34 e~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d   69 (418)
                      -.|-|+.|++.     ..+-.|+..||+-.+..+.|
T Consensus        67 RrvEITgP~d~-----km~inALNSgA~~~maDfED   97 (511)
T cd00727          67 RRVEITGPVDR-----KMVINALNSGAKVFMADFED   97 (511)
T ss_pred             CCEEECCCCCH-----HHHHHHHCCCCCEEEECCCC
T ss_conf             71030189858-----89999865798689843666


No 209
>pfam10055 DUF2292 Uncharacterized small protein (DUF2292). Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.50  E-value=51  Score=12.96  Aligned_cols=19  Identities=16%  Similarity=0.462  Sum_probs=13.9

Q ss_pred             ECCEEEEEECCEEEEEECC
Q ss_conf             2686999978899999854
Q gi|255764478|r  285 IENIRVRFDQGRVVEASAS  303 (418)
Q Consensus       285 ~~~~~l~f~~G~vv~~~a~  303 (418)
                      .--+++++-||+||+++..
T Consensus        15 yGsvti~Vhdg~VvQIe~~   33 (38)
T pfam10055        15 YGSVTITIQDGKVVQIEKT   33 (38)
T ss_pred             CCEEEEEEECCEEEEEEEH
T ss_conf             0349999988989999812


No 210
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.37  E-value=52  Score=12.94  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=32.5

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf             34799769998165358999999999998289886898727489
Q gi|255764478|r   29 NIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEA   72 (418)
Q Consensus        29 niqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~   72 (418)
                      ++=+|.+++|+.-....-+.+++++...+.||+ |.+...++..
T Consensus         3 g~L~gK~~lVTGaag~~GIG~a~A~~la~~Ga~-Vv~~~~~~~~   45 (252)
T PRK06079          3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQNDRM   45 (252)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEECCHHH
T ss_conf             613998899989999877999999999986999-9998488799


No 211
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=21.02  E-value=52  Score=12.90  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             CCCCEEEEECCCCHHHH-HHHHHHHHHHCCCCCCEE
Q ss_conf             79976999816535899-999999999828988689
Q gi|255764478|r   31 QEGQHLIVMAPVSALPL-ARLITKHAYMLGAGLVSV   65 (418)
Q Consensus        31 qkGe~VlI~~d~~a~~l-~ral~~aa~~~GA~~V~v   65 (418)
                      .+--.++|-+|....++ .||+-+++.++||+.|++
T Consensus        99 ~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~l  134 (342)
T COG1077          99 FPKPRIVICVPSGITDVERRAIKEAAESAGAREVYL  134 (342)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             788838997458865999999999998564755897


No 212
>pfam08643 DUF1776 Fungal family of unknown function (DUF1776). This is a fungal family of unknown function. One of the proteins in this family has been localized to the mitochondria.
Probab=20.82  E-value=53  Score=12.87  Aligned_cols=39  Identities=26%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf             99769998165358999999999998289886898727489
Q gi|255764478|r   32 EGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEA   72 (418)
Q Consensus        32 kGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~   72 (418)
                      +.|.||| +....+|++|+++-..+++|= -|++...+++-
T Consensus         2 r~~vVli-~Gs~~~pi~R~iA~dL~rrGf-~Vfa~~r~~~~   40 (296)
T pfam08643         2 RREVVLV-AGSPTEPLTRSIALDLERRGF-IVFVTVTSAEE   40 (296)
T ss_pred             CCEEEEE-ECCCCCCHHHHHHHHHHHCCC-EEEEEECCHHH
T ss_conf             6129999-669997458999999996897-89999577788


No 213
>PRK11637 hypothetical protein; Provisional
Probab=20.77  E-value=53  Score=12.86  Aligned_cols=17  Identities=12%  Similarity=-0.054  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             89999999999982898
Q gi|255764478|r   45 LPLARLITKHAYMLGAG   61 (418)
Q Consensus        45 ~~l~ral~~aa~~~GA~   61 (418)
                      ........+++|+.|-.
T Consensus        99 ~~~l~~~i~~~y~~g~~  115 (404)
T PRK11637         99 ERSLAAQLDAAFRQGEH  115 (404)
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999984784


No 214
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.69  E-value=53  Score=12.85  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf             3479976999816535899999999999828988689872748
Q gi|255764478|r   29 NIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSE   71 (418)
Q Consensus        29 niqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~   71 (418)
                      ++=+|.++||+.-....-+.+++.+...+.||+ |.+.+.++.
T Consensus         3 g~L~GK~alITGaa~~~GIG~aiA~~La~~GA~-V~i~~~~e~   44 (271)
T PRK06505          3 GLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGDA   44 (271)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEECCHH
T ss_conf             757999799979999854999999999986999-999818668


No 215
>KOG4529 consensus
Probab=20.66  E-value=53  Score=12.84  Aligned_cols=57  Identities=12%  Similarity=0.114  Sum_probs=29.3

Q ss_pred             HHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             847978999815973243079988999888988999899999984588735999659
Q gi|255764478|r  100 YSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFP  156 (418)
Q Consensus       100 ~~~~~a~i~i~~~np~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~P  156 (418)
                      ++.+-+|+-+.+.|++.+...--...+.-.+..-.....+.......+.+-.|..|.
T Consensus       106 ~n~g~vWikvi~Rnak~v~~~~r~~gs~GdrsvIeQied~l~aS~~f~rp~IifyF~  162 (404)
T KOG4529         106 ANLGKVWIKVIDRNAKYVSWNGRGHGSKGDRSVIEQIEDALNASTTFKRPSIIFYFA  162 (404)
T ss_pred             ECCCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             559826999835881343023136665350889999999998752258971899971


No 216
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=20.61  E-value=53  Score=12.84  Aligned_cols=302  Identities=15%  Similarity=0.115  Sum_probs=135.7

Q ss_pred             HCCCCHHHHHHHHHHHH-----HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH-CCC
Q ss_conf             40699999999999999-----873134799769998165358999999999998289886898727489899760-598
Q gi|255764478|r    8 VAHVDEFLLEKLAKVAL-----QVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYK-YGA   81 (418)
Q Consensus         8 ~~~m~~~~L~kyA~llV-----~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~~~d~~~~r~~~~-~a~   81 (418)
                      -.+|++.-|+.-.+-+-     ++|.+++..-..+..+..+.+.|+.++-..+...+. |++..-.|+.+-+.-++ .++
T Consensus        99 ~D~m~e~ei~~r~~~i~~~~~~rvG~~l~~d~vAvr~~s~d~~~fa~~vk~va~~~~~-pliL~s~dp~vl~aaL~~~~~  177 (454)
T PRK04165         99 SDTMSEEEIDERLKEINNFQFERVGEILKLDAVALRNVSGDPEKFAKAVKKVAETTEL-PLILCSFDPAVLKAALEVVAD  177 (454)
T ss_pred             CCCCCHHHHHHHHHHHHHCEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHCC
T ss_conf             3777789999999986512567723411520899991789989999999999721699-779983899999999997453


Q ss_pred             HHHHHHCC-HHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHH-------------HHHHHHHHHHHHHHHHHHC--
Q ss_conf             78986243-3679999999847978999815973243079988999-------------8889889998999999845--
Q gi|255764478|r   82 DYAFDRVA-DWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVS-------------RVNQAYLKAYKPALERISN--  145 (418)
Q Consensus        82 ~e~l~~~p-~~~~~~~~~~~~~~~a~i~i~~~np~~l~~vd~~ki~-------------~~~~a~~~~~k~~~~~~~~--  145 (418)
                      ...|-+-+ +--.+.|.++++...+-+.+.+++...|...-..-.+             ....+.....+..+..+..  
T Consensus       178 ~kPLlyaAt~~N~~~m~~LA~~~~~Pl~V~a~~L~~L~~l~~~~~~~GikdlVLDpg~~~~k~tl~~~~~IRRaAik~~~  257 (454)
T PRK04165        178 RRPLLYAATKDNWKEMAELAKEYNCPLVVSAPNLEELKSLVKKLQAAGIKDIVLDPGTENLKETLDNFTQIRRAAIKKGD  257 (454)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             79755227898899999999874984799779989999999999976985278889974488999999999999986378


Q ss_pred             CCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             887359996599899987368999778999999999999742665------97999999999999999973016847999
Q gi|255764478|r  146 FDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCI------DPIAAWAEHNNFLHQKSQWLSQRDFAEIR  219 (418)
Q Consensus       146 ~~~~W~i~~~Pt~awA~~vfp~~~~~~s~~~l~~~if~a~~~d~~------Dpv~~w~~~~~~~~~~~~~Ln~~~~~~i~  219 (418)
                      ..+..=+..+|..+|-        ..+....+|+..+...++.-.      +.+.-|.-+-.    +.-++      .| 
T Consensus       258 r~~gYP~i~~p~~~~~--------~d~~~~~~~E~~~As~~i~KYa~i~Vl~~~~~~~llPl----l~lR~------nI-  318 (454)
T PRK04165        258 RPLGYPIIAFPITAWM--------APPVSASMKEAVLASILIIKYADIMVLHSIEPWALLPL----LTLRQ------NI-  318 (454)
T ss_pred             CCCCCCEEECCHHHCC--------CCCCCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHH----HHHHH------HH-
T ss_conf             7778756730233205--------76200178999999999987465899716887886058----99987------60-


Q ss_pred             EECCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCE---ECCEEEEEEC--
Q ss_conf             97699649999558826227886025897146867863169513147341899970033035402---2686999978--
Q gi|255764478|r  220 FSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGML---IENIRVRFDQ--  294 (418)
Q Consensus       220 ~~~~gTDLt~~l~~~~~w~~~~~~~~~G~~~~~NlP~GEVftaP~~~~vnG~i~~d~p~~~~G~~---~~~~~l~f~~--  294 (418)
                      ||-|-.=+.++          .     |.+-+ |=|+++   ||+--++|=-+.+.--   .|-+   .-|-+|-+.|  
T Consensus       319 YTDPqkP~~Ve----------~-----giy~i-g~pde~---SPV~~TtNFaLTY~~V---~gdle~s~v~~~llv~Dt~  376 (454)
T PRK04165        319 YTDPRKPVAVE----------P-----GIYEI-GNPDEN---SPVLVTTNFALTYFTV---EGDIESSKVPCYLLVVDTD  376 (454)
T ss_pred             CCCCCCCCCCC----------C-----CCEEC-CCCCCC---CCEEEEEEEEEEEEEE---EEEECCCCCCEEEEEECCC
T ss_conf             47999981318----------7-----84427-998999---9779995336999998---4000006886699997589


Q ss_pred             CEEEEEEC--CC-HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEECCCCC-CEECCC
Q ss_conf             89999985--43-799999886428985268799986686200110120033232057526-412267
Q gi|255764478|r  295 GRVVEASA--SK-GEEMLNKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAAS-HIAFGQ  358 (418)
Q Consensus       295 G~vv~~~a--~~-~~~~l~~~l~~d~~a~~igE~~ig~n~~~i~~~~~l~~n~L~DEk~~~-H~A~G~  358 (418)
                      |.-|....  ++ +.+-+.+.++.-.=+..+-+=-|.. |+-.   ..+.|.+   |..+| ++-+|-
T Consensus       377 G~sV~tA~A~Gkf~~~~i~~~ik~~gi~~kv~hr~lIi-PG~a---A~l~G~~---ee~~Gw~V~VGP  437 (454)
T PRK04165        377 GLSVLTAVAGGKFTAEKIAEFIKESGIEDKVNHRKLII-PGLA---ARLSGDI---EELTGWEVLVGP  437 (454)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCHHHCCCCEEEC-CCHH---HHCCCCC---CCCCCCEEEECC
T ss_conf             82798642038667899999998709034315655651-5412---2104751---005698899986


No 217
>PRK12582 acyl-CoA synthetase; Provisional
Probab=20.52  E-value=54  Score=12.82  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             9999999999987313479976999816535899999999999828988689
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSV   65 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v   65 (418)
                      .+.+++|.-|+  .++|++|+.|.|.++...+-++-.  -++.++||-.|.+
T Consensus        86 ~~v~~lA~~L~--~lGv~~GDrVaIl~~N~~E~~~~~--lA~~~~Gav~vPv  133 (622)
T PRK12582         86 RAVDALAQALL--DLGLGPGRPVMILSGNSIEHALMT--LAAMQAGVPVAPV  133 (622)
T ss_pred             HHHHHHHHHHH--HCCCCCCCEEEEECCCHHHHHHHH--HHHHHHCCEEEEC
T ss_conf             99999999999--779699899999899839999999--9999849689821


No 218
>PRK11617 endonuclease V; Provisional
Probab=20.44  E-value=54  Score=12.81  Aligned_cols=37  Identities=8%  Similarity=-0.072  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEE
Q ss_conf             99999999999999973016847999976996499995
Q gi|255764478|r  194 AAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGL  231 (418)
Q Consensus       194 ~~w~~~~~~~~~~~~~Ln~~~~~~i~~~~~gTDLt~~l  231 (418)
                      +.|++.++.+.+....=+.-+...+++.+ |.|+.|.-
T Consensus         4 ~~l~~~Q~el~~kV~~~d~~~~~~~~~Va-GvDvSf~~   40 (223)
T PRK11617          4 ASLRAQQIELASSVIREDRLDKDPPDLIA-GADVGFEQ   40 (223)
T ss_pred             HHHHHHHHHHHHHEEECCCCCCCCCCEEE-EEEEEEEC
T ss_conf             99999999997414974789988763899-99886856


No 219
>PRK13262 ureE urease accessory protein UreE; Provisional
Probab=20.39  E-value=54  Score=12.81  Aligned_cols=19  Identities=16%  Similarity=0.141  Sum_probs=12.1

Q ss_pred             ECCCCEEEEEECCCCEECC
Q ss_conf             7699649999558826227
Q gi|255764478|r  221 SGPNTSLKVGLAEGHRWSG  239 (418)
Q Consensus       221 ~~~gTDLt~~l~~~~~w~~  239 (418)
                      +..|+||-+++..+-...+
T Consensus        45 T~~G~dLgIsldrn~~LaD   63 (231)
T PRK13262         45 STQGLDLGISLDRNVVLAD   63 (231)
T ss_pred             CCCCCEEEEEECCCCCCCC
T ss_conf             5688168898167660367


No 220
>PRK09089 consensus
Probab=20.38  E-value=54  Score=12.81  Aligned_cols=49  Identities=14%  Similarity=0.117  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999873134799769998165358999999999998289886898
Q gi|255764478|r   14 FLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVF   66 (418)
Q Consensus        14 ~~L~kyA~llV~~~lniqkGe~VlI~~d~~a~~l~ral~~aa~~~GA~~V~v~   66 (418)
                      .+.+++|..|..  +++++|+.|.|..+-..+-++-  .-++.++||-+|.+.
T Consensus        39 ~~~~~lA~~L~~--~Gi~~gd~V~i~~~n~~e~~~~--~lA~~~~Gav~vpl~   87 (517)
T PRK09089         39 QEVDKVAAFLQN--IGVKFGDKVALAVSNSTEFITA--YFAVSAIGAVAVPMN   87 (517)
T ss_pred             HHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHHH--HHHHHHHCCEEEEEC
T ss_conf             999999999997--2938869999994896999999--999998594999879


Done!