RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|255764478|ref|YP_003065205.2| aminopeptidase protein
[Candidatus Liberibacter asiaticus str. psy62]
(418 letters)
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A
{Staphylococcus aureus subsp} (A:186-418)
Length = 233
Score = 270 bits (692), Expect = 2e-73
Identities = 92/229 (40%), Positives = 130/229 (56%), Gaps = 1/229 (0%)
Query: 191 DPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGSSIAQ-NGIM 249
DP+ W +H L +Q L Q+++ + + T L VGLA+ H W +S
Sbjct: 3 DPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQA 62
Query: 250 CNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEML 309
NIPTEEVFTAP RV+GY T+ PL Y G +I+ ++ F G +++ SA KGE +L
Sbjct: 63 FIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVL 122
Query: 310 NKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCYSKCFKKPDN 369
+++ DEG+RRLGEVALVP S +S NT+FY+TLFDENAA H+A G Y+ +
Sbjct: 123 KDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTE 182
Query: 370 ALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWAF 418
G N S H+D+MIGS D+ + G+ ++G + G WA
Sbjct: 183 MTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWAS 231
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A
{Thermus thermophilus} (A:182-408)
Length = 227
Score = 267 bits (684), Expect = 2e-72
Identities = 123/227 (54%), Positives = 157/227 (69%), Gaps = 2/227 (0%)
Query: 191 DPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMC 250
DPIAAW HN LH+K +L+ R F + F GP T L VGLAEGH W GG++ + G +C
Sbjct: 2 DPIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLC 61
Query: 251 NPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLN 310
NPN+PTEEVFTAPH RVEG +++PL G L+E I RF++G VE A KGEE+L
Sbjct: 62 NPNLPTEEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLR 121
Query: 311 KILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCYSKCFKKPDNA 370
++LD DEGARRLGEVALVP + ++K +F+DTLFDENAASHIAFGQ Y + + +
Sbjct: 122 RLLDTDEGARRLGEVALVPADNPIAKTGLVFFDTLFDENAASHIAFGQAYQENLEGRPS- 180
Query: 371 LDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWA 417
+RGGN S+ H+DWMIGS +M+VDGL ++G P+MR G W
Sbjct: 181 -GEAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMRRGRWV 226
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A
{Staphylococcus aureus subsp} (A:1-153)
Length = 153
Score = 146 bits (370), Expect = 6e-36
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 16 LEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLM 75
L++ A++ ++VG+N+Q Q + + + V L L LI + AY GA V V Y D +
Sbjct: 11 LQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRL 70
Query: 76 LYKYGAD--YAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYL 133
++ + +A + + E A L++ ++P L+ DS K+ Q
Sbjct: 71 KFENESVEHFANHEIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNA 130
Query: 134 KAYKPALERISNFDINWSIVPFP 156
+A+K +E + W + FP
Sbjct: 131 RAFKGYMESVQKNQFPWVVAAFP 153
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A
{Thermus thermophilus} (A:1-148)
Length = 148
Score = 145 bits (368), Expect = 9e-36
Identities = 57/140 (40%), Positives = 85/140 (60%)
Query: 16 LEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLM 75
LEKLA++A++VG+N+++GQ +I AP+ A+ RL+ + AY GA L +V Y D E
Sbjct: 8 LEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARK 67
Query: 76 LYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKA 135
+ D+ W EG+A+A+ + A L++SG +P L +KV R +A +A
Sbjct: 68 RLALAPEEGLDKAPAWLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQKANARA 127
Query: 136 YKPALERISNFDINWSIVPF 155
YKPALE I+ F NW+IVPF
Sbjct: 128 YKPALEAITEFVTNWTIVPF 147
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein,
E.coli, montreal-kingston bacterial structural genomics
initiative, BSGI; NMR {Escherichia coli K12} (A:)
Length = 79
Score = 27.8 bits (62), Expect = 2.6
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 371 LDNWLEERGGNSSITHIDWMIGSGDMNVDG 400
L + L+ G + S I G + VDG
Sbjct: 23 LCDLLKLEGWSESGAQAKIAIAEGQVKVDG 52
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3
ubiquitin ligase, substrate binding domain,
phosphoprotein, protein binding; 1.80A {Homo sapiens}
PDB: 3egb_A (A:1-38,A:160-263)
Length = 142
Score = 27.5 bits (61), Expect = 3.5
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 395 DMNVDGLTKNGVLVPIMRGG 414
D + DGLT NGVLV RGG
Sbjct: 46 DGHXDGLTTNGVLVXHPRGG 65
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region;
heat shock proteins, protein-RNA interactions, ribosome,
structural genomics; 2.00A {Escherichia coli} (A:)
Length = 133
Score = 26.9 bits (59), Expect = 4.7
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 371 LDNWLEERGGNSSITHIDWMIGSGDMNVDG 400
LD WL + MI G ++ +G
Sbjct: 11 LDKWLWAARFYKTRALAREMIEGGKVHYNG 40
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea,
hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum
pernix} (A:167-309)
Length = 143
Score = 26.5 bits (58), Expect = 6.3
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 25 QVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYA 84
+ + G ++ ++ L + + ++ V E + + GAD+
Sbjct: 13 KAARTLYPGAYVAIVG---VGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHV 69
Query: 85 FDRVADWFC 93
D D
Sbjct: 70 VDARRDPVK 78
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine
proteinase, chymotrypsin-like proteinase, collapsed
oxyanion HOLE; 2.00A {Equine arteritis virus} (A:1-149)
Length = 149
Score = 26.0 bits (57), Expect = 9.1
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 55 AYMLGAGLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEG------LAKAYSDNTALLS 108
++++G ++ + +K D+A G A+ + + +
Sbjct: 32 SHVVGRANMATLKIGDAMLTLTFKKNGDFAEAVTTQSELPGNWPQLHFAQPTTGPASWCT 91
Query: 109 ISGDNPLLL 117
+GD LL
Sbjct: 92 ATGDEEGLL 100
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,221,735
Number of extensions: 143090
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 10
Length of query: 418
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 327
Effective length of database: 1,879,794
Effective search space: 614692638
Effective search space used: 614692638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)