RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str. psy62] (418 letters) >2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1 Length = 408 Score = 422 bits (1087), Expect = e-119 Identities = 191/405 (47%), Positives = 256/405 (63%), Gaps = 2/405 (0%) Query: 13 EFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEA 72 + LEKLA++A++VG+N+++GQ +I AP+ A+ RL+ + AY GA L +V Y D E Sbjct: 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQEL 64 Query: 73 TLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAY 132 + D+ W EG+A+A+ + A L++SG +P L +KV R +A Sbjct: 65 ARKRLALAPEEGLDKAPAWLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQKAN 124 Query: 133 LKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDP 192 +AYKPALE I+ F NW+IVPF WA V+P P A+ +L IF +RA DP Sbjct: 125 ARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPEEEAVRRLWEAIFQATRADQEDP 184 Query: 193 IAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNP 252 IAAW HN LH+K +L+ R F + F GP T L VGLAEGH W GG++ + G +CNP Sbjct: 185 IAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLCNP 244 Query: 253 NIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLNKI 312 N+PTEEVFTAPH RVEG +++PL G L+E I RF++G VE A KGEE+L ++ Sbjct: 245 NLPTEEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRL 304 Query: 313 LDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCYSKCFKKPDNALD 372 LD DEGARRLGEVALVP + ++K +F+DTLFDENAASHIAFGQ Y + Sbjct: 305 LDTDEGARRLGEVALVPADNPIAKTGLVFFDTLFDENAASHIAFGQAYQENL--EGRPSG 362 Query: 373 NWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWA 417 +RGGN S+ H+DWMIGS +M+VDGL ++G P+MR G W Sbjct: 363 EAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMRRGRWV 407 >1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1 Length = 418 Score = 422 bits (1085), Expect = e-118 Identities = 140/406 (34%), Positives = 213/406 (52%), Gaps = 3/406 (0%) Query: 16 LEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLM 75 L++ A++ ++VG+N+Q Q + + + V L L LI + AY GA V V Y D + Sbjct: 11 LQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRL 70 Query: 76 LYKYGAD--YAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYL 133 ++ + +A + + E A L++ ++P L+ DS K+ Q Sbjct: 71 KFENESVEHFANHEIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNA 130 Query: 134 KAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDPI 193 +A+K +E + W + FPS AWA+ VYP+ V A K + +F + R DP+ Sbjct: 131 RAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPV 190 Query: 194 AAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGGSSIAQ-NGIMCNP 252 W +H L +Q L Q+++ + + T L VGLA+ H W +S Sbjct: 191 ENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIA 250 Query: 253 NIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEASASKGEEMLNKI 312 NIPTEEVFTAP RV+GY T+ PL Y G +I+ ++ F G +++ SA KGE +L + Sbjct: 251 NIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDL 310 Query: 313 LDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCYSKCFKKPDNALD 372 ++ DEG+RRLGEVALVP S +S NT+FY+TLFDENAA H+A G Y+ + Sbjct: 311 INTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTV 370 Query: 373 NWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWAF 418 G N S H+D+MIGS D+ + G+ ++G + G WA Sbjct: 371 EEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWAS 416 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 53.4 bits (128), Expect = 9e-08 Identities = 86/491 (17%), Positives = 140/491 (28%), Gaps = 224/491 (45%) Query: 40 APVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGA-----DYAFDRVADWFCE 94 SAL + +A LV++F G DY F+ + D Sbjct: 140 KSNSAL-FRAVGEGNA-----QLVAIF-------------GGQGNTDDY-FEELRD---- 175 Query: 95 GLAKAYSDNTA-LLSISGD--NPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWS 151 L + Y L+ S + + L+ D++KV + + +I Sbjct: 176 -LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV------FTQG----------LNIL-- 216 Query: 152 IVPFPSCAW---AEIVYPD-D-----PV--P-IAIAKLANTIFSVSRAHC----IDP--- 192 W PD D P+ P I + +LA+ + V+ P Sbjct: 217 -------EWLENPSNT-PDKDYLLSIPISCPLIGVIQLAH--YVVT---AKLLGFTPGEL 263 Query: 193 -------------------IAA---WAEHNNFLHQKSQ-------WL---SQRDFAEIRF 220 IA W F + ++ + Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWES---F-FVSVRKAITVLFFIGVRCYEAY----- 314 Query: 221 SGPNTSL-----KVGLAEGHRWSGGS-----SIA-------QNGI-MCNPNIPTEE-VFT 261 PNTSL + L G SI+ Q+ + N ++P + V Sbjct: 315 --PNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368 Query: 262 APH-ARR---VEGYATSTKPLVYQGMLIENIRVR-------FDQGRVVEASASKGEEMLN 310 + + V G S L G+ N+ +R DQ R+ S K + N Sbjct: 369 SLVNGAKNLVVSGPPQS---LY--GL---NLTLRKAKAPSGLDQSRI-PFSERK-LKFSN 418 Query: 311 KILDIDEGARRLGEVALVP-HSSLLSKMNTLFYDTLFDENAASHIAFGQCYSKCFKKP-- 367 + L + P HS LL D + + ++++F +K + P Sbjct: 419 RFLPVA-----------SPFHSHLLVPA----SDLINKDLVKNNVSFN---AKDIQIPVY 460 Query: 368 ------------DNALD-----------NWLEERGGNSSITHI-DWMIGSGDMNVDGLTK 403 + + W E THI D+ G G GL Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKW--ETTTQFKATHILDF--GPG--GASGL-- 512 Query: 404 NGVLVPIMRGG 414 GVL + G Sbjct: 513 -GVLTHRNKDG 522 Score = 32.6 bits (74), Expect = 0.19 Identities = 55/371 (14%), Positives = 92/371 (24%), Gaps = 164/371 (44%) Query: 103 NTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAW-- 160 + + +N LV K + + Y+ A A S + Sbjct: 102 HALAAKLLQENDTTLV-----KTKELIKNYITARIMAKRPFDK--------KSNSALFRA 148 Query: 161 -------------------------AEI--VYPD--DPVPIAIAKLANTIFSVSRAHCID 191 ++ Y + I A T+ + R Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL---IKFSAETLSELIR----T 201 Query: 192 PIAAWAEHNNFLHQKS----QWLSQRD-------FAEIRFSGP---NTSL-------KV- 229 + A + + +WL I S P L K+ Sbjct: 202 TLDA-----EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256 Query: 230 GLAEG---HRWSG--GSSIAQNGI-------MCNPNIPTEEVFTAPHARRVEGYATSTKP 277 G G G G S Q G+ + + E F + + K Sbjct: 257 GFTPGELRSYLKGATGHS--Q-GLVTAVAIAETD----SWESF----------FVSVRKA 299 Query: 278 LVYQGMLIENIRVRFDQG--------RVVEASASKGEE----MLNKILD---------ID 316 + +L I VR + ++E S E ML+ I + ++ Sbjct: 300 IT---VLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYVN 354 Query: 317 EGARRLGE-----VALV----------PHSSLLSKMNTLFYDTLFDENAA-----SHIAF 356 + L ++LV P SL +N TL A S I F Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-LNL----TLRKAKAPSGLDQSRIPF 409 Query: 357 GQCYSKCFKKP 367 + +K Sbjct: 410 SE------RKL 414 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 34.6 bits (78), Expect = 0.044 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 19/44 (43%) Query: 137 KPALERISNFDINWSIVPFPSCAWAEI-VYPDDPVP-IAI-AKL 177 K AL+++ A + +Y DD P +AI A + Sbjct: 19 KQALKKLQ----------------ASLKLYADDSAPALAIKATM 46 Score = 30.7 bits (68), Expect = 0.54 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 4/15 (26%) Query: 130 QAYLKAY----KPAL 140 QA LK Y PAL Sbjct: 26 QASLKLYADDSAPAL 40 Score = 29.6 bits (65), Expect = 1.2 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 12/33 (36%) Query: 68 KDSEATLMLYKYGADYAFDRVADWFCEGLA-KA 99 K +A+L LY AD D LA KA Sbjct: 23 KKLQASLKLY---AD---DSAP-----ALAIKA 44 Score = 28.0 bits (61), Expect = 4.0 Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 8/21 (38%) Query: 98 KAYSDNTALLSISGDNPLLLV 118 K Y+D++A P L + Sbjct: 30 KLYADDSA--------PALAI 42 >3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus} Length = 139 Score = 31.7 bits (71), Expect = 0.27 Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 10/121 (8%) Query: 20 AKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKY 79 AK A Q + EG ++ M P+ I + G D+E + +Y Sbjct: 9 AKKAAQSSAQL-EGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIRTDTELSFDIYVS 67 Query: 80 GADYAFDRVADWFCEGLAKAYSD-------NTALLS--ISGDNPLLLVNEDSDKVSRVNQ 130 DYA R AD CE L A +D T L S +SG L D + Sbjct: 68 ETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSESDLVSTDALEN 127 Query: 131 A 131 A Sbjct: 128 A 128 >2mys_A Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 843 Score = 30.0 bits (67), Expect = 1.0 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%) Query: 152 IVPFPSCAWAEIVYPDDPVP-IAIAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQK 206 W I + D I + + IFS+ C+ P A N L+ + Sbjct: 502 EYXXEGIEWEFIDFGMDLAACIELIEXPMGIFSILEEECMFPKATDTSFXNXLYDE 557 >3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A Length = 308 Score = 29.3 bits (65), Expect = 1.8 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 11/82 (13%) Query: 20 AKVALQVGVNIQEGQHLIVMA--PVSALPLARLITKHAYMLGAGLVSVFYKDSEATLMLY 77 A++AL +N +EG ++ S L+ +++ + + LY Sbjct: 25 ARIALSFVLNYEEGGERNILHGDKESEAFLSEMVSAQPLQGERNM---------SMESLY 75 Query: 78 KYGADYAFDRVADWFCEGLAKA 99 +YG+ R+ F Sbjct: 76 EYGSRAGVWRILKLFKAFDIPL 97 >3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding domain, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A Length = 263 Score = 29.0 bits (65), Expect = 2.1 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Query: 387 IDWMIGSGDMNVDGLTKNGVLVPIMRGG 414 W G M DGLT NGVLV RGG Sbjct: 161 AKWKNPDGHM--DGLTTNGVLVMHPRGG 186 >1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* Length = 659 Score = 28.7 bits (64), Expect = 2.7 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 13/73 (17%) Query: 130 QAYLKAYKPAL---ERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSR 186 +AY ++Y+P + E +N P W E PD + L + Sbjct: 25 EAYNRSYRPFMEILEEFPEMKVNVHFSG-PLLEWIEENKPD--YLDLLRSLI-------K 74 Query: 187 AHCIDPIAAWAEH 199 ++ + A Sbjct: 75 RGQLEIVVAGFYE 87 >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} Length = 755 Score = 28.4 bits (63), Expect = 2.9 Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 4/87 (4%) Query: 82 DYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNEDSDKVSRVNQAYLKAYKPALE 141 +R+ D + E A+ + A I+G + ++ + + ++ L YK Sbjct: 131 KLNNNRLLDLYLE--AREVVGDKAKPVITGPITYVALSTGVEDFTAAVKSLLPLYKQVFT 188 Query: 142 RISNFDINWSIVPFPSCAWAEIVYPDD 168 + ++ + + D Sbjct: 189 ELVKAGASY--IQVDEPIFVTDEGKDY 213 Score = 27.6 bits (61), Expect = 5.1 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%) Query: 284 LIENIRVRFDQGRVVEASASKGE----EMLNKILD-IDEGARRLGEVALVPHSSLLSKMN 338 +E I+ +G+ + A G K ++ + + + P SLL Sbjct: 267 NLEAIKTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEEQSAALTIQPSCSLLHVPV 326 Query: 339 TLFYDTLFDENAASHIAFG 357 T +T D + +AF Sbjct: 327 TTKNETDLDPVLRNGLAFA 345 >2hdl_A Small inducible cytokine B14; CXCL14, BRAK, chemokine; NMR {Homo sapiens} Length = 78 Score = 28.2 bits (63), Expect = 3.6 Identities = 7/63 (11%), Positives = 16/63 (25%), Gaps = 13/63 (20%) Query: 137 KPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANTIFSVSRAHCIDPIAAW 196 K + ++ +P C + I + + HC+ P Sbjct: 12 KIRYSDVKKLEM---KPKYPHCEEKMV----------IITTKSVSRYRGQEHCLHPKLQS 58 Query: 197 AEH 199 + Sbjct: 59 TKR 61 >1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein interaction, lyase/metal binding protein complex; 3.20A {Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A 1y0v_A 1xfu_A Length = 777 Score = 27.6 bits (61), Expect = 4.8 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 13/78 (16%) Query: 262 APHARRV-EGYATSTKPLVYQGMLIENIRVRFDQGRVVEASAS-KGEEMLNKILDIDEGA 319 AP R V E YA P +++ M + ++G + S S K E + +D+ +G Sbjct: 227 APDHRTVLELYA----PDMFEYMN------KLEKGGFEKISESLKKEGVEKDRIDVLKGE 276 Query: 320 RRLGEVALVP-HSSLLSK 336 + L LVP H+ K Sbjct: 277 KALKASGLVPEHADAFKK 294 >2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Length = 185 Score = 27.2 bits (60), Expect = 6.9 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Query: 358 QCYSKCFKKPDNAL--DNWLEERGGNSSITH 386 Q S P NAL L+ERGGN+S TH Sbjct: 28 QGVSDSCTGPVNALIRSVLLQERGGNNSFTH 58 >3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli} Length = 505 Score = 26.9 bits (59), Expect = 8.9 Identities = 10/44 (22%), Positives = 11/44 (25%), Gaps = 5/44 (11%) Query: 219 RFSGPNTSLKVGLAEGHRWSGGSSIAQNGIMCNPNIPTEEVFTA 262 + G N S G W GGS G T Sbjct: 25 QQGGNNNSNS-----GVHWGGGSGSGNGGREHGSQTGWGWSKTN 63 >3fz2_A Minor tail protein U; mixed alpha-beta fold, viral protein; 2.70A {Enterobacteria phage lambda} PDB: 3fzb_A 1z1z_A Length = 134 Score = 26.7 bits (59), Expect = 9.8 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 4/30 (13%) Query: 349 NAASHIAFGQCYSKCFKKPDNALDNWLEER 378 A HI + + P + LD W+E R Sbjct: 62 QAELHIE---VFLP-AQVPASELDAWMESR 87 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.134 0.407 Gapped Lambda K H 0.267 0.0474 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,646,901 Number of extensions: 166609 Number of successful extensions: 465 Number of sequences better than 10.0: 1 Number of HSP's gapped: 461 Number of HSP's successfully gapped: 28 Length of query: 418 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 323 Effective length of database: 3,390,050 Effective search space: 1094986150 Effective search space used: 1094986150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.7 bits)