BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str. psy62] (418 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 418 Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/418 (100%), Positives = 418/418 (100%) Query: 1 MDKSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA 60 MDKSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA Sbjct: 1 MDKSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA 60 Query: 61 GLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNE 120 GLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNE Sbjct: 61 GLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNE 120 Query: 121 DSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANT 180 DSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANT Sbjct: 121 DSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANT 180 Query: 181 IFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGG 240 IFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGG Sbjct: 181 IFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGG 240 Query: 241 SSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEA 300 SSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEA Sbjct: 241 SSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEA 300 Query: 301 SASKGEEMLNKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCY 360 SASKGEEMLNKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCY Sbjct: 301 SASKGEEMLNKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCY 360 Query: 361 SKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWAF 418 SKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWAF Sbjct: 361 SKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWAF 418 >gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 27.7 bits (60), Expect = 0.36, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 20/36 (55%) Query: 174 IAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQW 209 +A AN VSRA +D A WA +N + KS++ Sbjct: 235 VAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKY 270 >gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 10/16 (62%), Positives = 13/16 (81%) Query: 69 DSEATLMLYKYGADYA 84 DS A + L+KYGAD+A Sbjct: 465 DSIARIFLWKYGADFA 480 >gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 293 Score = 23.9 bits (50), Expect = 4.7, Method: Compositional matrix adjust. Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%) Query: 61 GLVSVFYKDSEATLMLYKYGADYAFDRVAD-------WFCE 94 GL+ V E LY G D + ++ D WFC+ Sbjct: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 19/45 (42%) Query: 43 SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDR 87 S L +AR KH L SV + L LY+Y + F R Sbjct: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.407 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 270,318 Number of Sequences: 1233 Number of extensions: 11109 Number of successful extensions: 36 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 7 length of query: 418 length of database: 328,796 effective HSP length: 76 effective length of query: 342 effective length of database: 235,088 effective search space: 80400096 effective search space used: 80400096 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)