BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764478|ref|YP_003065205.2| aminopeptidase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (418 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/418 (100%), Positives = 418/418 (100%)

Query: 1   MDKSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA 60
           MDKSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA
Sbjct: 1   MDKSISTVAHVDEFLLEKLAKVALQVGVNIQEGQHLIVMAPVSALPLARLITKHAYMLGA 60

Query: 61  GLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNE 120
           GLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNE
Sbjct: 61  GLVSVFYKDSEATLMLYKYGADYAFDRVADWFCEGLAKAYSDNTALLSISGDNPLLLVNE 120

Query: 121 DSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANT 180
           DSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANT
Sbjct: 121 DSDKVSRVNQAYLKAYKPALERISNFDINWSIVPFPSCAWAEIVYPDDPVPIAIAKLANT 180

Query: 181 IFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGG 240
           IFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGG
Sbjct: 181 IFSVSRAHCIDPIAAWAEHNNFLHQKSQWLSQRDFAEIRFSGPNTSLKVGLAEGHRWSGG 240

Query: 241 SSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEA 300
           SSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEA
Sbjct: 241 SSIAQNGIMCNPNIPTEEVFTAPHARRVEGYATSTKPLVYQGMLIENIRVRFDQGRVVEA 300

Query: 301 SASKGEEMLNKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCY 360
           SASKGEEMLNKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCY
Sbjct: 301 SASKGEEMLNKILDIDEGARRLGEVALVPHSSLLSKMNTLFYDTLFDENAASHIAFGQCY 360

Query: 361 SKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWAF 418
           SKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWAF
Sbjct: 361 SKCFKKPDNALDNWLEERGGNSSITHIDWMIGSGDMNVDGLTKNGVLVPIMRGGEWAF 418


>gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 351

 Score = 27.7 bits (60), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 174 IAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQW 209
           +A  AN    VSRA  +D  A WA  +N  + KS++
Sbjct: 235 VAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKY 270


>gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 609

 Score = 25.0 bits (53), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 69  DSEATLMLYKYGADYA 84
           DS A + L+KYGAD+A
Sbjct: 465 DSIARIFLWKYGADFA 480


>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 293

 Score = 23.9 bits (50), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 61  GLVSVFYKDSEATLMLYKYGADYAFDRVAD-------WFCE 94
           GL+ V     E    LY  G D +  ++ D       WFC+
Sbjct: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 23.9 bits (50), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 19/45 (42%)

Query: 43  SALPLARLITKHAYMLGAGLVSVFYKDSEATLMLYKYGADYAFDR 87
           S L +AR   KH       L SV  +     L LY+Y   + F R
Sbjct: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 270,318
Number of Sequences: 1233
Number of extensions: 11109
Number of successful extensions: 36
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 328,796
effective HSP length: 76
effective length of query: 342
effective length of database: 235,088
effective search space: 80400096
effective search space used: 80400096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)