Query gi|255764479|ref|YP_003084342.1| hypothetical protein CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 30 12:59:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764479.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ayo_A Alpha-2-macroglobulin; 9.4 1.1E+02 0.0047 13.4 1.6 14 30-43 67-80 (130) 2 2zkq_n 40S ribosomal protein S 9.2 48 0.002 15.4 -0.3 14 16-29 19-32 (56) 3 3jyv_N 40S ribosomal protein S 8.2 57 0.0024 15.0 -0.3 14 16-29 15-28 (50) 4 1edy_A Alpha 1-macroglobulin; 6.6 1.5E+02 0.0065 12.6 1.4 14 30-43 68-81 (134) 5 3m62_B UV excision repair prot 6.4 1.6E+02 0.0066 12.6 1.6 19 6-24 58-76 (106) 6 2djr_A Zinc finger BED domain- 6.0 1.7E+02 0.007 12.5 1.6 23 4-26 17-39 (76) 7 1oey_J P40-PHOX, neutrophil cy 5.6 1.6E+02 0.0067 12.6 0.9 13 13-25 2-14 (107) 8 2uyz_B Small ubiquitin-related 5.4 1.5E+02 0.0062 12.8 0.7 22 3-26 57-78 (79) 9 3k6y_A Serine protease, possib 5.0 79 0.0033 14.2 -1.0 22 20-41 56-77 (237) 10 1wju_A NEDD8 ultimate buster-1 4.9 2E+02 0.0083 12.1 1.3 20 7-26 77-96 (100) No 1 >1ayo_A Alpha-2-macroglobulin; receptor binding domain; HET: NAG; 1.90A {Bos taurus} SCOP: b.2.4.1 PDB: 1bv8_A Probab=9.38 E-value=1.1e+02 Score=13.39 Aligned_cols=14 Identities=43% Similarity=0.899 Sum_probs=11.6 Q ss_pred EEEEECCCCEEEEC Q ss_conf 76552114637859 Q gi|255764479|r 30 AKRFDIMNNHVIVY 43 (43) Q Consensus 30 akrfdimnnhvivy 43 (43) .+|+++-+++|++| T Consensus 67 v~r~E~~~~~v~lY 80 (130) T 1ayo_A 67 VSRTEVSNNHVLIY 80 (130) T ss_dssp EEEEEEETTEEEEE T ss_pred EEEEEECCCEEEEE T ss_conf 07989739999999 No 2 >2zkq_n 40S ribosomal protein S29E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_N Probab=9.23 E-value=48 Score=15.39 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=11.1 Q ss_pred EEEEEECCCCCEEE Q ss_conf 65575224466388 Q gi|255764479|r 16 INCMRCSRQSGVIV 29 (43) Q Consensus 16 incmrcsrqsgviv 29 (43) -.|-+|++..|+|- T Consensus 19 r~Cr~Cg~~~glIr 32 (56) T 2zkq_n 19 RSCRVCSNRHGLIR 32 (56) T ss_dssp CCCSSSCCSTTCCT T ss_pred CEEEECCCCCCEEE T ss_conf 62367799743110 No 3 >3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} Probab=8.24 E-value=57 Score=14.98 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=11.3 Q ss_pred EEEEEECCCCCEEE Q ss_conf 65575224466388 Q gi|255764479|r 16 INCMRCSRQSGVIV 29 (43) Q Consensus 16 incmrcsrqsgviv 29 (43) ..|-+|++..|+|- T Consensus 15 r~CrvCg~~~glIr 28 (50) T 3jyv_N 15 RQCRVCSSHTGLVR 28 (50) T ss_dssp CCCSSSCCCSSCCS T ss_pred CEEEECCCCCCEEE T ss_conf 70277799845531 No 4 >1edy_A Alpha 1-macroglobulin; beta sandwich, pseudo-symmetric dimer, protein binding; 2.30A {Rattus norvegicus} SCOP: b.2.4.1 Probab=6.61 E-value=1.5e+02 Score=12.64 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.8 Q ss_pred EEEEECCCCEEEEC Q ss_conf 76552114637859 Q gi|255764479|r 30 AKRFDIMNNHVIVY 43 (43) Q Consensus 30 akrfdimnnhvivy 43 (43) .+|+++-+++|++| T Consensus 68 v~r~E~~~~~V~lY 81 (134) T 1edy_A 68 IQRTEVNTNHVLIY 81 (134) T ss_dssp EEEEEEETTEEEEE T ss_pred EEEEEECCCEEEEE T ss_conf 48899649989999 No 5 >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Probab=6.44 E-value=1.6e+02 Score=12.59 Aligned_cols=19 Identities=21% Similarity=0.607 Sum_probs=15.2 Q ss_pred CCCCCCCCCEEEEEEECCC Q ss_conf 8665545514655752244 Q gi|255764479|r 6 PSCGVTEGHFINCMRCSRQ 24 (43) Q Consensus 6 pscgvteghfincmrcsrq 24 (43) -+||+.+|.+|.++...++ T Consensus 58 ~~~~I~~~~~i~lv~~~~~ 76 (106) T 3m62_B 58 SECGLKDGDQVVFMVSQKK 76 (106) T ss_dssp TTTTCCTTCEEEEECCC-- T ss_pred HHCCCCCCCEEEEEECCCC T ss_conf 9969999999999971799 No 6 >2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=6.03 E-value=1.7e+02 Score=12.46 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=18.8 Q ss_pred CCCCCCCCCCCEEEEEEECCCCC Q ss_conf 88866554551465575224466 Q gi|255764479|r 4 APPSCGVTEGHFINCMRCSRQSG 26 (43) Q Consensus 4 appscgvteghfincmrcsrqsg 26 (43) ||..-|-..+++..|--|.+|-| T Consensus 17 apar~gh~~~~~ATCRLCG~qV~ 39 (76) T 2djr_A 17 APARAGHHPNQYATCRLCGRQVS 39 (76) T ss_dssp CCCCSSSCSCSCEEESSSCCBCC T ss_pred CCCCCCCCCCCHHHHHHHHHHHC T ss_conf 64678999763078988887745 No 7 >1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 domain, heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Probab=5.57 E-value=1.6e+02 Score=12.56 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=8.9 Q ss_pred CCEEEEEEECCCC Q ss_conf 5146557522446 Q gi|255764479|r 13 GHFINCMRCSRQS 25 (43) Q Consensus 13 ghfincmrcsrqs 25 (43) .|..||.||---. T Consensus 2 ~h~~~~lrcy~~~ 14 (107) T 1oey_J 2 SHMTNWLRVYYYE 14 (107) T ss_dssp -CCCEEEEEEEEE T ss_pred CCCCCEEEEEEEC T ss_conf 7623268999975 No 8 >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2io2_B 1z5s_B 1tgz_B 2bf8_B Probab=5.45 E-value=1.5e+02 Score=12.75 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCEEEEEEECCCCC Q ss_conf 788866554551465575224466 Q gi|255764479|r 3 NAPPSCGVTEGHFINCMRCSRQSG 26 (43) Q Consensus 3 nappscgvteghfincmrcsrqsg 26 (43) ..|-++|...|..|.++ .||.| T Consensus 57 ~T~~~~~i~d~d~I~v~--~~~~G 78 (79) T 2uyz_B 57 HTPKELGMEEEDVIEVY--QEQTG 78 (79) T ss_dssp CCHHHHTCCTTEEEEEE--ECCCC T ss_pred CCHHHCCCCCCCEEEEE--EECCC T ss_conf 99799699999999999--96368 No 9 >3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A Probab=4.99 E-value=79 Score=14.22 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=14.6 Q ss_pred EECCCCCEEEEEEEECCCCEEE Q ss_conf 5224466388765521146378 Q gi|255764479|r 20 RCSRQSGVIVAKRFDIMNNHVI 41 (43) Q Consensus 20 rcsrqsgvivakrfdimnnhvi 41 (43) +-++-||+++.+.+=+-|.||+ T Consensus 56 ~~~~GTG~~i~~~~IlT~~HVV 77 (237) T 3k6y_A 56 KVLEGTGFVISPDRVMTNAHVV 77 (237) T ss_dssp EEEEEEEEEEETTEEEECGGGT T ss_pred CEEEEEEEEEECCEEEECHHHH T ss_conf 4363799999799999756844 No 10 >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Probab=4.90 E-value=2e+02 Score=12.06 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=13.6 Q ss_pred CCCCCCCCEEEEEEECCCCC Q ss_conf 66554551465575224466 Q gi|255764479|r 7 SCGVTEGHFINCMRCSRQSG 26 (43) Q Consensus 7 scgvteghfincmrcsrqsg 26 (43) +||+.++..|..|+-+..|+ T Consensus 77 ~y~I~~~s~i~v~~~~~~~~ 96 (100) T 1wju_A 77 EQGVAHNVKAMVLELKQSSG 96 (100) T ss_dssp HHTCCSSEEEEEECCCCCCC T ss_pred HCCCCCCCEEEEEEECCCCC T ss_conf 97999999999997078999 Done!