Query         gi|255764479|ref|YP_003084342.1| hypothetical protein CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 30 12:59:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764479.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1ayo_A Alpha-2-macroglobulin;    9.4 1.1E+02  0.0047   13.4   1.6   14   30-43     67-80  (130)
  2 2zkq_n 40S ribosomal protein S   9.2      48   0.002   15.4  -0.3   14   16-29     19-32  (56)
  3 3jyv_N 40S ribosomal protein S   8.2      57  0.0024   15.0  -0.3   14   16-29     15-28  (50)
  4 1edy_A Alpha 1-macroglobulin;    6.6 1.5E+02  0.0065   12.6   1.4   14   30-43     68-81  (134)
  5 3m62_B UV excision repair prot   6.4 1.6E+02  0.0066   12.6   1.6   19    6-24     58-76  (106)
  6 2djr_A Zinc finger BED domain-   6.0 1.7E+02   0.007   12.5   1.6   23    4-26     17-39  (76)
  7 1oey_J P40-PHOX, neutrophil cy   5.6 1.6E+02  0.0067   12.6   0.9   13   13-25      2-14  (107)
  8 2uyz_B Small ubiquitin-related   5.4 1.5E+02  0.0062   12.8   0.7   22    3-26     57-78  (79)
  9 3k6y_A Serine protease, possib   5.0      79  0.0033   14.2  -1.0   22   20-41     56-77  (237)
 10 1wju_A NEDD8 ultimate buster-1   4.9   2E+02  0.0083   12.1   1.3   20    7-26     77-96  (100)

No 1  
>1ayo_A Alpha-2-macroglobulin; receptor binding domain; HET: NAG; 1.90A {Bos taurus} SCOP: b.2.4.1 PDB: 1bv8_A
Probab=9.38  E-value=1.1e+02  Score=13.39  Aligned_cols=14  Identities=43%  Similarity=0.899  Sum_probs=11.6

Q ss_pred             EEEEECCCCEEEEC
Q ss_conf             76552114637859
Q gi|255764479|r   30 AKRFDIMNNHVIVY   43 (43)
Q Consensus        30 akrfdimnnhvivy   43 (43)
                      .+|+++-+++|++|
T Consensus        67 v~r~E~~~~~v~lY   80 (130)
T 1ayo_A           67 VSRTEVSNNHVLIY   80 (130)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEECCCEEEEE
T ss_conf             07989739999999


No 2  
>2zkq_n 40S ribosomal protein S29E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_N
Probab=9.23  E-value=48  Score=15.39  Aligned_cols=14  Identities=36%  Similarity=0.762  Sum_probs=11.1

Q ss_pred             EEEEEECCCCCEEE
Q ss_conf             65575224466388
Q gi|255764479|r   16 INCMRCSRQSGVIV   29 (43)
Q Consensus        16 incmrcsrqsgviv   29 (43)
                      -.|-+|++..|+|-
T Consensus        19 r~Cr~Cg~~~glIr   32 (56)
T 2zkq_n           19 RSCRVCSNRHGLIR   32 (56)
T ss_dssp             CCCSSSCCSTTCCT
T ss_pred             CEEEECCCCCCEEE
T ss_conf             62367799743110


No 3  
>3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=8.24  E-value=57  Score=14.98  Aligned_cols=14  Identities=29%  Similarity=0.757  Sum_probs=11.3

Q ss_pred             EEEEEECCCCCEEE
Q ss_conf             65575224466388
Q gi|255764479|r   16 INCMRCSRQSGVIV   29 (43)
Q Consensus        16 incmrcsrqsgviv   29 (43)
                      ..|-+|++..|+|-
T Consensus        15 r~CrvCg~~~glIr   28 (50)
T 3jyv_N           15 RQCRVCSSHTGLVR   28 (50)
T ss_dssp             CCCSSSCCCSSCCS
T ss_pred             CEEEECCCCCCEEE
T ss_conf             70277799845531


No 4  
>1edy_A Alpha 1-macroglobulin; beta sandwich, pseudo-symmetric dimer, protein binding; 2.30A {Rattus norvegicus} SCOP: b.2.4.1
Probab=6.61  E-value=1.5e+02  Score=12.64  Aligned_cols=14  Identities=36%  Similarity=0.814  Sum_probs=11.8

Q ss_pred             EEEEECCCCEEEEC
Q ss_conf             76552114637859
Q gi|255764479|r   30 AKRFDIMNNHVIVY   43 (43)
Q Consensus        30 akrfdimnnhvivy   43 (43)
                      .+|+++-+++|++|
T Consensus        68 v~r~E~~~~~V~lY   81 (134)
T 1edy_A           68 IQRTEVNTNHVLIY   81 (134)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEECCCEEEEE
T ss_conf             48899649989999


No 5  
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=6.44  E-value=1.6e+02  Score=12.59  Aligned_cols=19  Identities=21%  Similarity=0.607  Sum_probs=15.2

Q ss_pred             CCCCCCCCCEEEEEEECCC
Q ss_conf             8665545514655752244
Q gi|255764479|r    6 PSCGVTEGHFINCMRCSRQ   24 (43)
Q Consensus         6 pscgvteghfincmrcsrq   24 (43)
                      -+||+.+|.+|.++...++
T Consensus        58 ~~~~I~~~~~i~lv~~~~~   76 (106)
T 3m62_B           58 SECGLKDGDQVVFMVSQKK   76 (106)
T ss_dssp             TTTTCCTTCEEEEECCC--
T ss_pred             HHCCCCCCCEEEEEECCCC
T ss_conf             9969999999999971799


No 6  
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=6.03  E-value=1.7e+02  Score=12.46  Aligned_cols=23  Identities=30%  Similarity=0.683  Sum_probs=18.8

Q ss_pred             CCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             88866554551465575224466
Q gi|255764479|r    4 APPSCGVTEGHFINCMRCSRQSG   26 (43)
Q Consensus         4 appscgvteghfincmrcsrqsg   26 (43)
                      ||..-|-..+++..|--|.+|-|
T Consensus        17 apar~gh~~~~~ATCRLCG~qV~   39 (76)
T 2djr_A           17 APARAGHHPNQYATCRLCGRQVS   39 (76)
T ss_dssp             CCCCSSSCSCSCEEESSSCCBCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             64678999763078988887745


No 7  
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 domain, heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=5.57  E-value=1.6e+02  Score=12.56  Aligned_cols=13  Identities=23%  Similarity=0.322  Sum_probs=8.9

Q ss_pred             CCEEEEEEECCCC
Q ss_conf             5146557522446
Q gi|255764479|r   13 GHFINCMRCSRQS   25 (43)
Q Consensus        13 ghfincmrcsrqs   25 (43)
                      .|..||.||---.
T Consensus         2 ~h~~~~lrcy~~~   14 (107)
T 1oey_J            2 SHMTNWLRVYYYE   14 (107)
T ss_dssp             -CCCEEEEEEEEE
T ss_pred             CCCCCEEEEEEEC
T ss_conf             7623268999975


No 8  
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2io2_B 1z5s_B 1tgz_B 2bf8_B
Probab=5.45  E-value=1.5e+02  Score=12.75  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             788866554551465575224466
Q gi|255764479|r    3 NAPPSCGVTEGHFINCMRCSRQSG   26 (43)
Q Consensus         3 nappscgvteghfincmrcsrqsg   26 (43)
                      ..|-++|...|..|.++  .||.|
T Consensus        57 ~T~~~~~i~d~d~I~v~--~~~~G   78 (79)
T 2uyz_B           57 HTPKELGMEEEDVIEVY--QEQTG   78 (79)
T ss_dssp             CCHHHHTCCTTEEEEEE--ECCCC
T ss_pred             CCHHHCCCCCCCEEEEE--EECCC
T ss_conf             99799699999999999--96368


No 9  
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A
Probab=4.99  E-value=79  Score=14.22  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=14.6

Q ss_pred             EECCCCCEEEEEEEECCCCEEE
Q ss_conf             5224466388765521146378
Q gi|255764479|r   20 RCSRQSGVIVAKRFDIMNNHVI   41 (43)
Q Consensus        20 rcsrqsgvivakrfdimnnhvi   41 (43)
                      +-++-||+++.+.+=+-|.||+
T Consensus        56 ~~~~GTG~~i~~~~IlT~~HVV   77 (237)
T 3k6y_A           56 KVLEGTGFVISPDRVMTNAHVV   77 (237)
T ss_dssp             EEEEEEEEEEETTEEEECGGGT
T ss_pred             CEEEEEEEEEECCEEEECHHHH
T ss_conf             4363799999799999756844


No 10 
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=4.90  E-value=2e+02  Score=12.06  Aligned_cols=20  Identities=20%  Similarity=0.222  Sum_probs=13.6

Q ss_pred             CCCCCCCCEEEEEEECCCCC
Q ss_conf             66554551465575224466
Q gi|255764479|r    7 SCGVTEGHFINCMRCSRQSG   26 (43)
Q Consensus         7 scgvteghfincmrcsrqsg   26 (43)
                      +||+.++..|..|+-+..|+
T Consensus        77 ~y~I~~~s~i~v~~~~~~~~   96 (100)
T 1wju_A           77 EQGVAHNVKAMVLELKQSSG   96 (100)
T ss_dssp             HHTCCSSEEEEEECCCCCCC
T ss_pred             HCCCCCCCEEEEEEECCCCC
T ss_conf             97999999999997078999


Done!