Query gi|255764479|ref|YP_003084342.1| hypothetical protein CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 06:03:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764479.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wjua_ d.15.1.1 (A:) NEDD8 ul 9.4 55 0.004 13.8 1.3 21 6-26 76-96 (100) 2 d1ayoa_ b.2.4.1 (A:) alpha-2-m 8.0 73 0.0053 13.1 1.4 14 30-43 67-80 (130) 3 d2uyzb1 d.15.1.1 (B:20-96) SUM 5.7 89 0.0065 12.7 0.9 21 4-26 57-77 (77) 4 d1oeyj_ d.15.2.2 (J:) Neutroph 5.6 91 0.0066 12.6 0.9 11 14-24 1-11 (105) 5 d1wiaa_ d.15.1.1 (A:) Ubiquiti 5.6 1E+02 0.0075 12.3 1.9 18 5-22 61-78 (95) 6 d1euca2 c.23.4.1 (A:131-306) S 5.5 49 0.0036 14.1 -0.5 18 21-38 147-164 (176) 7 d1edya_ b.2.4.1 (A:) alpha-1-m 5.5 1E+02 0.0076 12.3 1.4 14 30-43 68-81 (134) 8 d1dcqa2 g.45.1.1 (A:247-368) P 5.0 52 0.0038 13.9 -0.7 17 5-22 26-42 (122) 9 d1mcvi_ g.3.2.1 (I:) Trypsin i 4.2 94 0.0069 12.5 0.2 7 19-25 7-13 (28) 10 d1ky9a2 b.47.1.1 (A:11-259) Pr 3.7 59 0.0043 13.6 -1.2 17 25-41 79-97 (249) No 1 >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Probab=9.41 E-value=55 Score=13.78 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=15.5 Q ss_pred CCCCCCCCCEEEEEEECCCCC Q ss_conf 866554551465575224466 Q gi|255764479|r 6 PSCGVTEGHFINCMRCSRQSG 26 (43) Q Consensus 6 pscgvteghfincmrcsrqsg 26 (43) .+||+.++..|..|+-.+.++ T Consensus 76 ~~~gI~~~s~i~vi~~~~~~~ 96 (100) T d1wjua_ 76 EEQGVAHNVKAMVLELKQSSG 96 (100) T ss_dssp HHHTCCSSEEEEEECCCCCCC T ss_pred HHCCCCCCCEEEEEECCCCCC T ss_conf 776989999999997178999 No 2 >d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus) [TaxId: 9913]} Probab=7.98 E-value=73 Score=13.12 Aligned_cols=14 Identities=43% Similarity=0.899 Sum_probs=11.4 Q ss_pred EEEEECCCCEEEEC Q ss_conf 76552114637859 Q gi|255764479|r 30 AKRFDIMNNHVIVY 43 (43) Q Consensus 30 akrfdimnnhvivy 43 (43) .+|+++-+++|++| T Consensus 67 v~r~E~~~~~V~lY 80 (130) T d1ayoa_ 67 VSRTEVSNNHVLIY 80 (130) T ss_dssp EEEEEEETTEEEEE T ss_pred CEEEEECCCEEEEE T ss_conf 66889739989999 No 3 >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Probab=5.66 E-value=89 Score=12.66 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=14.4 Q ss_pred CCCCCCCCCCCEEEEEEECCCCC Q ss_conf 88866554551465575224466 Q gi|255764479|r 4 APPSCGVTEGHFINCMRCSRQSG 26 (43) Q Consensus 4 appscgvteghfincmrcsrqsg 26 (43) .|-+.++.+|+.|.++. +|.| T Consensus 57 T~~~l~~edgD~Idv~~--~q~G 77 (77) T d2uyzb1 57 TPKELGMEEEDVIEVYQ--EQTG 77 (77) T ss_dssp CHHHHTCCTTEEEEEEE--CCCC T ss_pred CHHHCCCCCCCEEEEEE--ECCC T ss_conf 98993999999999997--4479 No 4 >d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Probab=5.64 E-value=91 Score=12.60 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=7.0 Q ss_pred CEEEEEEECCC Q ss_conf 14655752244 Q gi|255764479|r 14 HFINCMRCSRQ 24 (43) Q Consensus 14 hfincmrcsrq 24 (43) |..||.||--- T Consensus 1 h~~~~lrcy~~ 11 (105) T d1oeyj_ 1 HMTNWLRVYYY 11 (105) T ss_dssp CCCEEEEEEEE T ss_pred CCCCEEEEEEE T ss_conf 94205899997 No 5 >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Probab=5.61 E-value=1e+02 Score=12.32 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=13.9 Q ss_pred CCCCCCCCCCEEEEEEEC Q ss_conf 886655455146557522 Q gi|255764479|r 5 PPSCGVTEGHFINCMRCS 22 (43) Q Consensus 5 ppscgvteghfincmrcs 22 (43) --+|++.+|.+|.+|+-. T Consensus 61 L~~y~i~~g~~v~l~~~~ 78 (95) T d1wiaa_ 61 LSSLNITNNCVIHCHRSP 78 (95) T ss_dssp TTTTTCCTTEEEEEECCC T ss_pred HHHCCCCCCCEEEEEECC T ss_conf 899699989899999738 No 6 >d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Probab=5.51 E-value=49 Score=14.06 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=13.4 Q ss_pred ECCCCCEEEEEEEECCCC Q ss_conf 224466388765521146 Q gi|255764479|r 21 CSRQSGVIVAKRFDIMNN 38 (43) Q Consensus 21 csrqsgvivakrfdimnn 38 (43) .-||.|||++..||-|.+ T Consensus 147 afrqaGvi~v~s~~El~~ 164 (176) T d1euca2 147 ALQSAGVVVSMSPAQLGT 164 (176) T ss_dssp HHHHTTCEECSSGGGHHH T ss_pred HHHHCCCEECCCHHHHHH T ss_conf 999889869299999999 No 7 >d1edya_ b.2.4.1 (A:) alpha-1-macroglobulin {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=5.45 E-value=1e+02 Score=12.27 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.4 Q ss_pred EEEEECCCCEEEEC Q ss_conf 76552114637859 Q gi|255764479|r 30 AKRFDIMNNHVIVY 43 (43) Q Consensus 30 akrfdimnnhvivy 43 (43) .+|+++-+++|++| T Consensus 68 v~r~E~~~~~v~lY 81 (134) T d1edya_ 68 IQRTEVNTNHVLIY 81 (134) T ss_dssp EEEEEEETTEEEEE T ss_pred EEEEEECCCEEEEE T ss_conf 37999539969999 No 8 >d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=5.01 E-value=52 Score=13.91 Aligned_cols=17 Identities=29% Similarity=0.684 Sum_probs=11.9 Q ss_pred CCCCCCCCCCEEEEEEEC Q ss_conf 886655455146557522 Q gi|255764479|r 5 PPSCGVTEGHFINCMRCS 22 (43) Q Consensus 5 ppscgvteghfincmrcs 22 (43) |.-+-++-|-|+ |++|| T Consensus 26 p~w~s~n~Gvfv-C~~Cs 42 (122) T d1dcqa2 26 PTWLSTNLGILT-CIECS 42 (122) T ss_dssp CCEEETTTTEEE-CHHHH T ss_pred CCEEEECCCEEE-CHHHH T ss_conf 996994279887-05455 No 9 >d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]} Probab=4.19 E-value=94 Score=12.52 Aligned_cols=7 Identities=57% Similarity=1.199 Sum_probs=0.0 Q ss_pred EEECCCC Q ss_conf 7522446 Q gi|255764479|r 19 MRCSRQS 25 (43) Q Consensus 19 mrcsrqs 25 (43) |||.|.| T Consensus 7 m~c~~ds 13 (28) T d1mcvi_ 7 MRCKQDS 13 (28) T ss_dssp CBCSSGG T ss_pred HHCCCCC T ss_conf 1023544 No 10 >d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Probab=3.68 E-value=59 Score=13.62 Aligned_cols=17 Identities=47% Similarity=0.845 Sum_probs=0.0 Q ss_pred CCEEEEEE--EECCCCEEE Q ss_conf 66388765--521146378 Q gi|255764479|r 25 SGVIVAKR--FDIMNNHVI 41 (43) Q Consensus 25 sgvivakr--fdimnnhvi 41 (43) ||+|+.+. +=+-|+||+ T Consensus 79 SG~iI~~~~g~IlTn~HVv 97 (249) T d1ky9a2 79 SGVIIDADKGYVVTNNHVV 97 (249) T ss_dssp EEEEEETTTTEEEEEHHHH T ss_pred CEEEEECCCCEEEEECCCC T ss_conf 3799861582698621201 Done!