Query         gi|255764479|ref|YP_003084342.1| hypothetical protein CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 06:03:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764479.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1wjua_ d.15.1.1 (A:) NEDD8 ul   9.4      55   0.004   13.8   1.3   21    6-26     76-96  (100)
  2 d1ayoa_ b.2.4.1 (A:) alpha-2-m   8.0      73  0.0053   13.1   1.4   14   30-43     67-80  (130)
  3 d2uyzb1 d.15.1.1 (B:20-96) SUM   5.7      89  0.0065   12.7   0.9   21    4-26     57-77  (77)
  4 d1oeyj_ d.15.2.2 (J:) Neutroph   5.6      91  0.0066   12.6   0.9   11   14-24      1-11  (105)
  5 d1wiaa_ d.15.1.1 (A:) Ubiquiti   5.6   1E+02  0.0075   12.3   1.9   18    5-22     61-78  (95)
  6 d1euca2 c.23.4.1 (A:131-306) S   5.5      49  0.0036   14.1  -0.5   18   21-38    147-164 (176)
  7 d1edya_ b.2.4.1 (A:) alpha-1-m   5.5   1E+02  0.0076   12.3   1.4   14   30-43     68-81  (134)
  8 d1dcqa2 g.45.1.1 (A:247-368) P   5.0      52  0.0038   13.9  -0.7   17    5-22     26-42  (122)
  9 d1mcvi_ g.3.2.1 (I:) Trypsin i   4.2      94  0.0069   12.5   0.2    7   19-25      7-13  (28)
 10 d1ky9a2 b.47.1.1 (A:11-259) Pr   3.7      59  0.0043   13.6  -1.2   17   25-41     79-97  (249)

No 1  
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.41  E-value=55  Score=13.78  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=15.5

Q ss_pred             CCCCCCCCCEEEEEEECCCCC
Q ss_conf             866554551465575224466
Q gi|255764479|r    6 PSCGVTEGHFINCMRCSRQSG   26 (43)
Q Consensus         6 pscgvteghfincmrcsrqsg   26 (43)
                      .+||+.++..|..|+-.+.++
T Consensus        76 ~~~gI~~~s~i~vi~~~~~~~   96 (100)
T d1wjua_          76 EEQGVAHNVKAMVLELKQSSG   96 (100)
T ss_dssp             HHHTCCSSEEEEEECCCCCCC
T ss_pred             HHCCCCCCCEEEEEECCCCCC
T ss_conf             776989999999997178999


No 2  
>d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.98  E-value=73  Score=13.12  Aligned_cols=14  Identities=43%  Similarity=0.899  Sum_probs=11.4

Q ss_pred             EEEEECCCCEEEEC
Q ss_conf             76552114637859
Q gi|255764479|r   30 AKRFDIMNNHVIVY   43 (43)
Q Consensus        30 akrfdimnnhvivy   43 (43)
                      .+|+++-+++|++|
T Consensus        67 v~r~E~~~~~V~lY   80 (130)
T d1ayoa_          67 VSRTEVSNNHVLIY   80 (130)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             CEEEEECCCEEEEE
T ss_conf             66889739989999


No 3  
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.66  E-value=89  Score=12.66  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=14.4

Q ss_pred             CCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             88866554551465575224466
Q gi|255764479|r    4 APPSCGVTEGHFINCMRCSRQSG   26 (43)
Q Consensus         4 appscgvteghfincmrcsrqsg   26 (43)
                      .|-+.++.+|+.|.++.  +|.|
T Consensus        57 T~~~l~~edgD~Idv~~--~q~G   77 (77)
T d2uyzb1          57 TPKELGMEEEDVIEVYQ--EQTG   77 (77)
T ss_dssp             CHHHHTCCTTEEEEEEE--CCCC
T ss_pred             CHHHCCCCCCCEEEEEE--ECCC
T ss_conf             98993999999999997--4479


No 4  
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.64  E-value=91  Score=12.60  Aligned_cols=11  Identities=27%  Similarity=0.362  Sum_probs=7.0

Q ss_pred             CEEEEEEECCC
Q ss_conf             14655752244
Q gi|255764479|r   14 HFINCMRCSRQ   24 (43)
Q Consensus        14 hfincmrcsrq   24 (43)
                      |..||.||---
T Consensus         1 h~~~~lrcy~~   11 (105)
T d1oeyj_           1 HMTNWLRVYYY   11 (105)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCCCEEEEEEE
T ss_conf             94205899997


No 5  
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.61  E-value=1e+02  Score=12.32  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCEEEEEEEC
Q ss_conf             886655455146557522
Q gi|255764479|r    5 PPSCGVTEGHFINCMRCS   22 (43)
Q Consensus         5 ppscgvteghfincmrcs   22 (43)
                      --+|++.+|.+|.+|+-.
T Consensus        61 L~~y~i~~g~~v~l~~~~   78 (95)
T d1wiaa_          61 LSSLNITNNCVIHCHRSP   78 (95)
T ss_dssp             TTTTTCCTTEEEEEECCC
T ss_pred             HHHCCCCCCCEEEEEECC
T ss_conf             899699989899999738


No 6  
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.51  E-value=49  Score=14.06  Aligned_cols=18  Identities=17%  Similarity=0.277  Sum_probs=13.4

Q ss_pred             ECCCCCEEEEEEEECCCC
Q ss_conf             224466388765521146
Q gi|255764479|r   21 CSRQSGVIVAKRFDIMNN   38 (43)
Q Consensus        21 csrqsgvivakrfdimnn   38 (43)
                      .-||.|||++..||-|.+
T Consensus       147 afrqaGvi~v~s~~El~~  164 (176)
T d1euca2         147 ALQSAGVVVSMSPAQLGT  164 (176)
T ss_dssp             HHHHTTCEECSSGGGHHH
T ss_pred             HHHHCCCEECCCHHHHHH
T ss_conf             999889869299999999


No 7  
>d1edya_ b.2.4.1 (A:) alpha-1-macroglobulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.45  E-value=1e+02  Score=12.27  Aligned_cols=14  Identities=36%  Similarity=0.814  Sum_probs=11.4

Q ss_pred             EEEEECCCCEEEEC
Q ss_conf             76552114637859
Q gi|255764479|r   30 AKRFDIMNNHVIVY   43 (43)
Q Consensus        30 akrfdimnnhvivy   43 (43)
                      .+|+++-+++|++|
T Consensus        68 v~r~E~~~~~v~lY   81 (134)
T d1edya_          68 IQRTEVNTNHVLIY   81 (134)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEECCCEEEEE
T ss_conf             37999539969999


No 8  
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.01  E-value=52  Score=13.91  Aligned_cols=17  Identities=29%  Similarity=0.684  Sum_probs=11.9

Q ss_pred             CCCCCCCCCCEEEEEEEC
Q ss_conf             886655455146557522
Q gi|255764479|r    5 PPSCGVTEGHFINCMRCS   22 (43)
Q Consensus         5 ppscgvteghfincmrcs   22 (43)
                      |.-+-++-|-|+ |++||
T Consensus        26 p~w~s~n~Gvfv-C~~Cs   42 (122)
T d1dcqa2          26 PTWLSTNLGILT-CIECS   42 (122)
T ss_dssp             CCEEETTTTEEE-CHHHH
T ss_pred             CCEEEECCCEEE-CHHHH
T ss_conf             996994279887-05455


No 9  
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=4.19  E-value=94  Score=12.52  Aligned_cols=7  Identities=57%  Similarity=1.199  Sum_probs=0.0

Q ss_pred             EEECCCC
Q ss_conf             7522446
Q gi|255764479|r   19 MRCSRQS   25 (43)
Q Consensus        19 mrcsrqs   25 (43)
                      |||.|.|
T Consensus         7 m~c~~ds   13 (28)
T d1mcvi_           7 MRCKQDS   13 (28)
T ss_dssp             CBCSSGG
T ss_pred             HHCCCCC
T ss_conf             1023544


No 10 
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=3.68  E-value=59  Score=13.62  Aligned_cols=17  Identities=47%  Similarity=0.845  Sum_probs=0.0

Q ss_pred             CCEEEEEE--EECCCCEEE
Q ss_conf             66388765--521146378
Q gi|255764479|r   25 SGVIVAKR--FDIMNNHVI   41 (43)
Q Consensus        25 sgvivakr--fdimnnhvi   41 (43)
                      ||+|+.+.  +=+-|+||+
T Consensus        79 SG~iI~~~~g~IlTn~HVv   97 (249)
T d1ky9a2          79 SGVIIDADKGYVVTNNHVV   97 (249)
T ss_dssp             EEEEEETTTTEEEEEHHHH
T ss_pred             CEEEEECCCCEEEEECCCC
T ss_conf             3799861582698621201


Done!