Query gi|255764480|ref|YP_003084343.1| hypothetical protein CLIBASIA_03352 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 57
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 13:20:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764480.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wbq_A L-arginine beta-hydroxy 32.4 9.3 0.00039 19.3 0.4 22 2-23 165-186 (358)
2 2yrm_A B-cell lymphoma 6 prote 30.4 9.4 0.00039 19.3 0.2 14 5-18 15-28 (43)
3 3a98_A DOCK2, dedicator of cyt 27.5 12 0.00052 18.8 0.4 15 30-44 98-112 (184)
4 1ds1_A Clavaminate synthase 1; 21.6 20 0.00083 17.8 0.5 29 2-30 141-175 (324)
5 2og5_A Putative oxygenase; non 16.1 30 0.0013 16.9 0.4 29 2-30 176-210 (357)
6 1jr7_A GABT protein, hypotheti 9.9 65 0.0027 15.4 0.6 31 2-32 143-180 (311)
7 2dbn_A Hypothetical protein YB 9.4 74 0.0031 15.1 0.7 14 1-14 376-389 (461)
8 1k3v_A Capsid protein VP2; ico 8.1 69 0.0029 15.2 0.1 10 4-13 48-57 (579)
9 1nx8_A CARC, carbapenem syntha 8.1 79 0.0033 15.0 0.4 22 2-23 98-119 (273)
10 1s58_A B19 parvovirus capsid; 6.4 79 0.0033 15.0 -0.2 12 3-14 24-35 (554)
No 1
>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A*
Probab=32.43 E-value=9.3 Score=19.33 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=19.9
Q ss_pred EEEEECCCCCCCCCCHHHHHHH
Q ss_conf 1475032111448242335320
Q gi|255764480|r 2 MFWHCDSRFAEDKPDIQGFLSY 23 (57)
Q Consensus 2 mfwhcdsrfaedkpdiqgflsy 23 (57)
+.||.|+-|....||++.|+.-
T Consensus 165 L~~HTD~sy~~~~Pd~v~L~Cl 186 (358)
T 2wbq_A 165 LGWHTEDAFSPYRADYVGLLSL 186 (358)
T ss_dssp EEEECTTTTCTTCCSEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 4571358988899886999964
No 2
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.38 E-value=9.4 Score=19.31 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=10.1
Q ss_pred EECCCCCCCCCCHH
Q ss_conf 50321114482423
Q gi|255764480|r 5 HCDSRFAEDKPDIQ 18 (57)
Q Consensus 5 hcdsrfaedkpdiq 18 (57)
.||+||+|+..--+
T Consensus 15 eCD~kF~Ee~sLK~ 28 (43)
T 2yrm_A 15 ECDCRFSEEASLKR 28 (43)
T ss_dssp SSCCCBSSHHHHHH
T ss_pred CCCCCHHHHHHHHH
T ss_conf 45410215778876
No 3
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}
Probab=27.55 E-value=12 Score=18.76 Aligned_cols=15 Identities=47% Similarity=0.920 Sum_probs=12.0
Q ss_pred EEHHHHHHHHHHCCE
Q ss_conf 411211344431000
Q gi|255764480|r 30 HTTALREWSTIWSSE 44 (57)
Q Consensus 30 httalrewstiwsse 44 (57)
.|+.||||++||..-
T Consensus 98 it~~lrEw~~~~k~l 112 (184)
T 3a98_A 98 VTTTLWEWGSIWKQL 112 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 778899999999999
No 4
>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A* 1gvg_A*
Probab=21.64 E-value=20 Score=17.80 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=22.5
Q ss_pred EEEEECCCCCCCCCCHHHHHHH------CCCEEEE
Q ss_conf 1475032111448242335320------6640354
Q gi|255764480|r 2 MFWHCDSRFAEDKPDIQGFLSY------GSSTIYH 30 (57)
Q Consensus 2 mfwhcdsrfaedkpdiqgflsy------gsstiyh 30 (57)
+.||+|.-|.+..||++.|+.- |.+|+.-
T Consensus 141 L~~HtD~~y~~~~P~~~~L~c~~~~~~gG~~t~v~ 175 (324)
T 1ds1_A 141 LEFHTEMAYHRLQPNYVMLACSRADHERTAATLVA 175 (324)
T ss_dssp EEEECTTTTBTTCCSEEEEEEEECCTTCCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
T ss_conf 67702388877898506655631489897759998
No 5
>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha- ketoglutarate dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A*
Probab=16.08 E-value=30 Score=16.91 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.0
Q ss_pred EEEEECCCCCCCCCCHHHHHHH------CCCEEEE
Q ss_conf 1475032111448242335320------6640354
Q gi|255764480|r 2 MFWHCDSRFAEDKPDIQGFLSY------GSSTIYH 30 (57)
Q Consensus 2 mfwhcdsrfaedkpdiqgflsy------gsstiyh 30 (57)
+.||+|.-|....||++.|+.. |.+|+.-
T Consensus 176 L~~HTD~ay~~~~Pd~v~L~Clr~a~~GG~sT~~a 210 (357)
T 2og5_A 176 LTFHNENAFHEHRPDFVMLLCLRADPTGRAGLRTA 210 (357)
T ss_dssp EEEECTTTTCTTCCSEEEEEEEECCTTSCCCEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEE
T ss_conf 53513189988997648999751469897767977
No 6
>1jr7_A GABT protein, hypothetical 37.4 kDa protein in ILEY-GABD intergenic region; gamma amino-butyric acid metabolism, GABA, ferrous oxygenase; 2.00A {Escherichia coli} SCOP: b.82.2.3 PDB: 2r6s_A*
Probab=9.90 E-value=65 Score=15.36 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=23.2
Q ss_pred EEEEECCCCCCCCCCHHHHHH-------HCCCEEEEEH
Q ss_conf 147503211144824233532-------0664035411
Q gi|255764480|r 2 MFWHCDSRFAEDKPDIQGFLS-------YGSSTIYHTT 32 (57)
Q Consensus 2 mfwhcdsrfaedkpdiqgfls-------ygsstiyhtt 32 (57)
|=||.|.-+-+++|+.|.++. =|.|++-|..
T Consensus 143 L~lHTDgtY~~e~P~~~lLl~~~E~~~eGGES~LLdvD 180 (311)
T 1jr7_A 143 MELHNDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLD 180 (311)
T ss_dssp EEEECSCTTSSSCCCEEEEEEEEEESCCBCCEEEEEGG
T ss_pred CCCCCCCCCCCCCCCHHHHHEEEECCCCCCCEEEECCH
T ss_conf 66555899889998534544160047888526887305
No 7
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=9.44 E-value=74 Score=15.09 Aligned_cols=14 Identities=29% Similarity=0.833 Sum_probs=7.4
Q ss_pred CEEEEECCCCCCCC
Q ss_conf 91475032111448
Q gi|255764480|r 1 MMFWHCDSRFAEDK 14 (57)
Q Consensus 1 mmfwhcdsrfaedk 14 (57)
+.|||||.-.+-++
T Consensus 376 ~V~WH~d~iH~v~~ 389 (461)
T 2dbn_A 376 SVWWHCDVIHSVAP 389 (461)
T ss_dssp EEEEETTCCEEECC
T ss_pred EEEECCCCCCCCCC
T ss_conf 88874887656377
No 8
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=8.10 E-value=69 Score=15.23 Aligned_cols=10 Identities=0% Similarity=0.146 Sum_probs=6.4
Q ss_pred EEECCCCCCC
Q ss_conf 7503211144
Q gi|255764480|r 4 WHCDSRFAED 13 (57)
Q Consensus 4 whcdsrfaed 13 (57)
||||++|-.|
T Consensus 48 ~~~~~~~~~~ 57 (579)
T 1k3v_A 48 NQTEFQYLGE 57 (579)
T ss_dssp CCEEEEEEGG
T ss_pred CCCCCEECCC
T ss_conf 7311077378
No 9
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*
Probab=8.08 E-value=79 Score=14.95 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.7
Q ss_pred EEEEECCCCCCCCCCHHHHHHH
Q ss_conf 1475032111448242335320
Q gi|255764480|r 2 MFWHCDSRFAEDKPDIQGFLSY 23 (57)
Q Consensus 2 mfwhcdsrfaedkpdiqgflsy 23 (57)
+.||.|.-|.+.-|+.+.|...
T Consensus 98 l~~H~D~~y~~~pp~~~~L~~~ 119 (273)
T 1nx8_A 98 LPFHADGGLLLSQVDQVFLYAA 119 (273)
T ss_dssp EEEECTTTTTTCCCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 7755157997789765999979
No 10
>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral virus; 3.50A {Human parvovirus B19} SCOP: b.121.5.2
Probab=6.44 E-value=79 Score=14.95 Aligned_cols=12 Identities=17% Similarity=0.667 Sum_probs=8.6
Q ss_pred EEEECCCCCCCC
Q ss_conf 475032111448
Q gi|255764480|r 3 FWHCDSRFAEDK 14 (57)
Q Consensus 3 fwhcdsrfaedk 14 (57)
-|||||-|.++.
T Consensus 24 ~W~~gs~f~~~~ 35 (554)
T 1s58_A 24 MWSEGATFSANS 35 (554)
T ss_dssp CCCCEEEEETTE
T ss_pred EEECCCEECCCE
T ss_conf 362677877997
Done!