RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764480|ref|YP_003084343.1| hypothetical protein
CLIBASIA_03352 [Candidatus Liberibacter asiaticus str. psy62]
         (57 letters)



>gnl|CDD|35176 COG5617, COG5617, Predicted integral membrane protein [Function
           unknown].
          Length = 801

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 14  KPDIQGFLSYGSSTIYHTTALREWSTIW 41
                G+  YG       T +   + IW
Sbjct: 444 TALENGWFKYGFPRFLELTVVIRKALIW 471


>gnl|CDD|145689 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
           This family consists of taurine catabolism dioxygenases
           of the TauD, TfdA family. TauD from E. coli is a
           alpha-ketoglutarate-dependent taurine dioxygenase. This
           enzyme catalyses the oxygenolytic release of sulfite
           from taurine. TfdA from Burkholderia sp. is a
           2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate
           dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a
           2,4-dichlorophenoxyacetate monooxygenase. Also included
           are gamma-Butyrobetaine hydroxylase enzymes
           EC:1.14.11.1.
          Length = 253

 Score = 25.1 bits (55), Expect = 4.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 2   MFWHCDSRFAEDKPDIQGFLS 22
           + WH D  + E+ P IQ    
Sbjct: 93  LPWHTDLSYLEEPPGIQLLHC 113


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.134    0.455 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 762,241
Number of extensions: 26976
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 57
Length of database: 6,263,737
Length adjustment: 29
Effective length of query: 28
Effective length of database: 5,637,076
Effective search space: 157838128
Effective search space used: 157838128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)