RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764480|ref|YP_003084343.1| hypothetical protein
CLIBASIA_03352 [Candidatus Liberibacter asiaticus str. psy62]
         (57 letters)



>gnl|CDD|132113 TIGR03069, PS_II_S4, photosystem II S4 domain protein.  Members
          of this protein family are about 265 residues long and
          each contains an S4 RNA-binding domain of about 48
          residues. The member from the Cyanobacterium,
          Synechocystis sp. PCC 6803, was detected as a novel
          polypeptide in a highly purified preparation of active
          photosystem II (Kashino, et al., 2002). The
          phylogenetic distribution, including Cyanobacteria and
          Arabidopsis, supports a role in photosystem II,
          although the high bit score cutoffs for this model
          reflect similar sequences in non-photosynthetic
          organisms such as Carboxydothermus hydrogenoformans, a
          Gram-positive bacterium.
          Length = 257

 Score = 23.8 bits (52), Expect = 9.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 32 TALREWSTIWSS 43
           ALR W  +WS 
Sbjct: 25 QALRTWEPVWSD 36


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.134    0.455 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 918,879
Number of extensions: 36703
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 3
Length of query: 57
Length of database: 5,994,473
Length adjustment: 29
Effective length of query: 28
Effective length of database: 5,367,841
Effective search space: 150299548
Effective search space used: 150299548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.0 bits)