HHsearch alignment for GI: 255764481 and conserved domain: PRK13627
>PRK13627 carnitine operon protein CaiE; Provisional.
Probab=99.70 E-value=3.7e-17 Score=127.77 Aligned_cols=166 Identities=15% Similarity=0.279 Sum_probs=124.6
Q ss_pred CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf 50579975655108889859988989956559889989988989866868916846865531143422321023331222
Q gi|255764481|r 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNF 81 (271)
Q Consensus 2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g 81 (271)
T Consensus 11 P~i~~~afIap~A~viGdV~ig~~~sIw~~aVlRGD~---------------~~I~IG~~tNIQD~~viH~~~------- 68 (196)
T PRK13627 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDY---------------GRLIVQAGANLQDGCIMHGYC------- 68 (196)
T ss_pred CCCCCCEEECCCCEEEEEEEECCCCEECCCEEEECCC---------------CCEEECCCCEECCCCEEECCC-------
T ss_conf 7229983889999899849999998897770895688---------------717989986767983781489-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCC
Q ss_conf 22233222222212244321111222222122332000016655433100123443223452455321486065234443
Q gi|255764481|r 82 VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAV 161 (271)
Q Consensus 82 ~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v 161 (271)
T Consensus 69 -~~~~~IG~~vtIGH~ail--------------------------hgc~Igd~~lIGmgavVldga~Ig~~~iI~AgslV 121 (196)
T PRK13627 69 -DTDTIVGENGHIGHGAIL--------------------------HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFV 121 (196)
T ss_pred -CCCCEECCCEEECCCEEE--------------------------EEEEEECCCEECCCCEEECCCEECCCCEECCCCEE
T ss_conf -998588898058787299--------------------------63499489788469799288899999899768645
Q ss_pred CCCEEEECCCEEECC-CCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 365064047435013-21122333310001074532334420144428889999999999999972799899
Q gi|255764481|r 162 HQFTRIGKYAFIGGM-TGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIY 232 (271)
Q Consensus 162 ~~~v~IG~~a~ig~g-s~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~ 232 (271)
T Consensus 122 ~~g~~ip~~~L~~G~PAk~vR~lt~~ei----------------~~~~~~a~~Y~~la~r~~~~l~~~~Pl~ 177 (196)
T PRK13627 122 KAGFQGEKRQLLMGTPARAVRSVSDQEL----------------HWKRLNTKEYQDLAGRCHASLHETQPLT 177 (196)
T ss_pred CCCCCCCCCCEEEECCEEEEECCCHHHH----------------HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7994938981998778168114999999----------------9988769999999999985485468864