HHsearch alignment for GI: 255764481 and conserved domain: TIGR01208
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=97.71 E-value=4.9e-05 Score=52.00 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=14.2
Q ss_pred EEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Q ss_conf 0888985998898995655988998998898986
Q gi|255764481|r 14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELI 47 (271)
Q Consensus 14 A~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~ 47 (271)
T Consensus 255 s~i~GRV~v~~gakid~ns~i~GPa~IG~d~~I~ 288 (361)
T TIGR01208 255 SKIEGRVEVGEGAKIDVNSVIRGPAVIGEDCIIE 288 (361)
T ss_pred CEEEEEEEECCCCEECCCCEEECCEEECCCCEEE
T ss_conf 5788407908978842377787060877952782