HHsearch alignment for GI: 255764481 and conserved domain: TIGR01852
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=99.86 E-value=9.3e-22 Score=156.54 Aligned_cols=227 Identities=19% Similarity=0.326 Sum_probs=151.1
Q ss_pred CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC------------CCEEEEEEECCCCCE
Q ss_conf 50579975655108889859988989956559889989988989866868916------------846865531143422
Q gi|255764481|r 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAG------------KTKIGDFTKVFPMAV 69 (271)
Q Consensus 2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g------------~t~IG~~~~I~~~a~ 69 (271)
T Consensus 11 A~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~PQdlky~GE~t~l~IG~~n~IRE~VT 90 (257)
T TIGR01852 11 AEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGEPQDLKYKGERTELIIGDNNTIREFVT 90 (257)
T ss_pred CEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEECCEEECCCCCCCEECCCCCEEEECCCCEEEEEEE
T ss_conf 68289857801888789758868858757368967708789988807607679885650148701799889656975578
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 32102333122222233222222212244321111222222122332000016655433100123443223452455321
Q gi|255764481|r 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIV 149 (271)
Q Consensus 70 Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~I 149 (271)
T Consensus 91 i~~GT-----~~g~g~T~iG~~nllMAysHvA-------HDC~vGn~vv~aN~a~LAGHV~vgD~a~iGG~~avHQFvRI 158 (257)
T TIGR01852 91 INRGT-----KSGGGVTSIGNNNLLMAYSHVA-------HDCVVGNHVVLANNATLAGHVEVGDYAIIGGLVAVHQFVRI 158 (257)
T ss_pred ECCCC-----CCCCCEEEECCCCEECCCCEEE-------ECCEECCEEEEECCCEECEEEEECCEEEECCCCCEEEEEEE
T ss_conf 50662-----5888889988876572053561-------24368881698136312227998889997789721101330
Q ss_pred CCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 48606523444336506404743501321122333310001074532334420144428889999999999999972799
Q gi|255764481|r 150 DDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGD 229 (271)
Q Consensus 150 gd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~ 229 (271)
T Consensus 159 G~~aMigG~s~v~~D--vpPY~~~~G~~~--------a~l~G--lN~vGLrR~Gf~~~~i-~~i~~ayr~lfr~~~~~~~ 225 (257)
T TIGR01852 159 GRYAMIGGLSAVSKD--VPPYGLVEGNSR--------AVLRG--LNIVGLRRRGFDREEI-TAIKKAYRLLFRSGLPLQE 225 (257)
T ss_pred HHHHHHHHHCCCCCC--CCCCEEECCCCC--------CEEEE--EEEEEEECCCCCHHHH-HHHHHHHHHHHCCCCCHHH
T ss_conf 002322120024678--776178637875--------33788--7013221378798999-9999998876179989899
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 899999999964258989999999
Q gi|255764481|r 230 SIYKNAGAIREQNVSCPEVSDIIN 253 (271)
Q Consensus 230 ~l~e~l~~l~~~~~~~~~v~~~~~ 253 (271)
T Consensus 226 ~~~~v~e~P~~~~~~v~~~~~FI~ 249 (257)
T TIGR01852 226 ALQQVAEEPYEDNPEVKEIVDFIR 249 (257)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 999998351337757999999860