HHsearch alignment for GI: 255764481 and conserved domain: TIGR02287
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=99.80 E-value=3e-20 Score=147.12 Aligned_cols=151 Identities=22% Similarity=0.327 Sum_probs=113.3
Q ss_pred CCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf 79975655108889859988989956559889989988989866868916846865531143422321023331222222
Q gi|255764481|r 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGT 84 (271)
Q Consensus 5 ~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~ 84 (271)
T Consensus 6 GLtPVVhp~ayVHP~AVL------------------------------iGDVi~G~rcYvgPlASL---------RGDFG 46 (193)
T TIGR02287 6 GLTPVVHPEAYVHPDAVL------------------------------IGDVIVGKRCYVGPLASL---------RGDFG 46 (193)
T ss_pred CCCCCCCCCCCCCCCEEE------------------------------EEEEEECCCCEECCCCCC---------CCCCC
T ss_conf 884656987734686378------------------------------621788795246766313---------57757
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCC
Q ss_conf 33222222212244321111222222122332000016655433100123443223452455321486065234443365
Q gi|255764481|r 85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF 164 (271)
Q Consensus 85 ~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~ 164 (271)
T Consensus 47 rIvl~eGAN~QD~CVMH-G--FPg~DTvVeen------GHvGHgAiLH-------------gC~vgrnaLvGMNAVVMDg 104 (193)
T TIGR02287 47 RIVLKEGANVQDTCVMH-G--FPGQDTVVEEN------GHVGHGAILH-------------GCRVGRNALVGMNAVVMDG 104 (193)
T ss_pred CEEEECCCCCCCCCEEC-C--CCCCCEEEECC------CCCCCCEEEC-------------CCEECCCCEECCCEEEECC
T ss_conf 25753488614642436-7--29988676068------8233212351-------------5463252311165066166
Q ss_pred EEEECCCEEECCCCCC--CCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHH---HHHHHH
Q ss_conf 0640474350132112--233331000107453233442014442888999999999---999997
Q gi|255764481|r 165 TRIGKYAFIGGMTGVV--HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRA---VYKQIF 225 (271)
Q Consensus 165 v~IG~~a~ig~gs~V~--kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~---ayr~lf 225 (271)
T Consensus 105 Avige~sIVaA~aFVKAg~E~paq~Lv~GsPAkv~---------R~LseQElaWK~~GT~eYq~La 161 (193)
T TIGR02287 105 AVIGERSIVAASAFVKAGAEIPAQVLVVGSPAKVV---------RELSEQELAWKKRGTREYQDLA 161 (193)
T ss_pred CEECCCCCEEHHHHHHCCCCCCCCCEEECCCCEEE---------ECCHHHHHHHHHCCCHHHHHHH
T ss_conf 46677412002033434734784612662873055---------3311467887413425689999