HHsearch alignment for GI: 255764481 and conserved domain: cd03351
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=100.00 E-value=0 Score=591.14 Aligned_cols=254 Identities=44% Similarity=0.776 Sum_probs=249.7
Q ss_pred EECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 56551088898599889899565598899899889898668689168468655311434223210233312222223322
Q gi|255764481|r 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLV 88 (271)
Q Consensus 9 ~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~I 88 (271)
T Consensus 1 ~IHptAiI~~~A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~I 80 (254)
T cd03351 1 MIHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEI 80 (254)
T ss_pred CCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 91897796998999997999999899999999999999799689199797765256057534778767673798676997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEE
Q ss_conf 22222122443211112222221223320000166554331001234432234524553214860652344433650640
Q gi|255764481|r 89 GKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIG 168 (271)
Q Consensus 89 G~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG 168 (271)
T Consensus 81 G~~~~Ire~vtI~rgt~~~~~~T~IG~~~~im~~~HIaHdc~IG~~~iian~~~laGhv~Igd~a~IGg~~~v~q~v~IG 160 (254)
T cd03351 81 GDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIG 160 (254)
T ss_pred CCCCEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCEEECCCCEECCCCEECCCCEEC
T ss_conf 99778995330236743788755978885782025445677337975993344556856989984898836775981999
Q ss_pred CCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 47435013211223333100010745323344201444288899999999999999727998999999999642589899
Q gi|255764481|r 169 KYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEV 248 (271)
Q Consensus 169 ~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v 248 (271)
T Consensus 161 ~~a~Igags~V~kDVpp~~~v~G~PA~~~glN~vGl~R~g~~~~~i~~i~~ayr~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (254)
T cd03351 161 RHAMVGGGSGVVQDVPPYVIAAGNRARLRGLNLVGLKRRGFSREEIRALKRAYRILYRSGLTLEEALEELEEEAPDSPEV 240 (254)
T ss_pred CCEEECCCCEEECCCCCCCEECCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 66199767456113698726517965787214898867799999999999999999617998999999998764699899
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999999861588873
Q gi|255764481|r 249 SDIINFIFADRKRPL 263 (271)
Q Consensus 249 ~~~~~Fi~~s~rRgi 263 (271)
T Consensus 241 ~~~~~Fi~~s-~RGi 254 (254)
T cd03351 241 EELVDFIRSS-KRGI 254 (254)
T ss_pred HHHHHHHHHC-CCCC
T ss_conf 9999999736-7899