HHsearch alignment for GI: 255764481 and conserved domain: cd03352
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.91 E-value=2.8e-24 Score=172.35 Aligned_cols=160 Identities=27% Similarity=0.419 Sum_probs=136.8
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 85998898995655988998998898986686891684686553114342232102333122222233222222212244
Q gi|255764481|r 19 GAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGV 98 (271)
Q Consensus 19 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v 98 (271)
T Consensus 1 ~a~ig~~v~I~~~avI~~~v~Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~------------~~~IG~~~~I~~~~ 68 (205)
T cd03352 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYE------------GCIIGDRVIIHSGA 68 (205)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECC------------CCEECCEEEECCCE
T ss_conf 969199999999879999999999999989889999968898836600344727------------86875447771534
Q ss_pred CCCCCCC----C--------CCCCCCCCCCCHHCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCC
Q ss_conf 3211112----2--------22221223320000166554----331001234432234524553214860652344433
Q gi|255764481|r 99 TINRGTV----E--------YGGKTIVGDNNFFLANSHVA----HDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVH 162 (271)
Q Consensus 99 ~I~~gt~----~--------~~~~T~IG~~~~i~~~~hI~----Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~ 162 (271)
T Consensus 69 vIg~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~Ig~~~~I~~g~~~~T~IG~~~~i~~~v~igh~~~iG~~~~i~~~~~~~ 148 (205)
T cd03352 69 VIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIA 148 (205)
T ss_pred EECCCCCCCCCCCCCCEECCCCCCEEECCCEEECCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 86213532314798404514213189848849888627636642677478776864545255640415870750320002
Q ss_pred CCEEEECCCEEECCCCCCCC--CCCCCHHH
Q ss_conf 65064047435013211223--33310001
Q gi|255764481|r 163 QFTRIGKYAFIGGMTGVVHD--VIPYGILN 190 (271)
Q Consensus 163 ~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~ 190 (271)
T Consensus 149 g~~~Igd~~~iG~~s~i~~gv~IG~~a~Vg 178 (205)
T cd03352 149 GSTTIGDNVIIGGQVGIAGHLTIGDGVVIG 178 (205)
T ss_pred CCEEECCCCEECCCCEECCCCEECCCCEEC
T ss_conf 652497435398964882993999998998