HHsearch alignment for GI: 255764481 and conserved domain: cd03352

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.91  E-value=2.8e-24  Score=172.35  Aligned_cols=160  Identities=27%  Similarity=0.419  Sum_probs=136.8

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             85998898995655988998998898986686891684686553114342232102333122222233222222212244
Q gi|255764481|r   19 GAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGV   98 (271)
Q Consensus        19 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v   98 (271)
T Consensus         1 ~a~ig~~v~I~~~avI~~~v~Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~------------~~~IG~~~~I~~~~   68 (205)
T cd03352           1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYE------------GCIIGDRVIIHSGA   68 (205)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECC------------CCEECCEEEECCCE
T ss_conf             969199999999879999999999999989889999968898836600344727------------86875447771534


Q ss_pred             CCCCCCC----C--------CCCCCCCCCCCHHCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCC
Q ss_conf             3211112----2--------22221223320000166554----331001234432234524553214860652344433
Q gi|255764481|r   99 TINRGTV----E--------YGGKTIVGDNNFFLANSHVA----HDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVH  162 (271)
Q Consensus        99 ~I~~gt~----~--------~~~~T~IG~~~~i~~~~hI~----Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~  162 (271)
T Consensus        69 vIg~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~Ig~~~~I~~g~~~~T~IG~~~~i~~~v~igh~~~iG~~~~i~~~~~~~  148 (205)
T cd03352          69 VIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIA  148 (205)
T ss_pred             EECCCCCCCCCCCCCCEECCCCCCEEECCCEEECCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             86213532314798404514213189848849888627636642677478776864545255640415870750320002


Q ss_pred             CCEEEECCCEEECCCCCCCC--CCCCCHHH
Q ss_conf             65064047435013211223--33310001
Q gi|255764481|r  163 QFTRIGKYAFIGGMTGVVHD--VIPYGILN  190 (271)
Q Consensus       163 ~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~  190 (271)
T Consensus       149 g~~~Igd~~~iG~~s~i~~gv~IG~~a~Vg  178 (205)
T cd03352         149 GSTTIGDNVIIGGQVGIAGHLTIGDGVVIG  178 (205)
T ss_pred             CCEEECCCCEECCCCEECCCCEECCCCEEC
T ss_conf             652497435398964882993999998998