HHsearch alignment for GI: 255764481 and conserved domain: cd03359

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.67  E-value=3e-16  Score=122.11  Aligned_cols=125  Identities=18%  Similarity=0.239  Sum_probs=82.2

Q ss_pred             CCEECCCCEECCCCEECCC---CEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9899889898668689168---4686553114342232102333122222233222222212244321111222222122
Q gi|255764481|r   37 EVEIGAGVELISHCVVAGK---TKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIV  113 (271)
Q Consensus        37 ~v~IG~~~~I~~~v~I~g~---t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~I  113 (271)
T Consensus        21 nI~IG~~ssI~~~avirGD~~~I~IG~~~~I~d~~~I~~~~~~~~~~~~~-------------------------~p~~I   75 (161)
T cd03359          21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAF-------------------------FPLHI   75 (161)
T ss_pred             CEEECCCCEECCCCEEECCCCCEEECCCCEECCCCEEECCCCCCCCCCCC-------------------------CCCEE
T ss_conf             75999987899996896788654999985888998992464435778888-------------------------77284


Q ss_pred             CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC-CCCCCCCCCCC
Q ss_conf             332000016655433100123443223452455321486065234443365064047435013-21122333310
Q gi|255764481|r  114 GDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM-TGVVHDVIPYG  187 (271)
Q Consensus       114 G~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g-s~V~kdVpp~~  187 (271)
T Consensus        76 Gd~v~Ig~~~~i-~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~I~~gsvV~~~~~ip~~~~~~G~Pak~i~~l~e~~  149 (161)
T cd03359          76 GDYVFIGENCVV-NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECT  149 (161)
T ss_pred             CCCEEECCCEEE-ECCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEEEECCHHH
T ss_conf             898798998288-48896677155798199499799999899889898899898998199851808957699999