BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(271 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 549 bits (1414), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60
MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD
Sbjct: 1 MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60
Query: 61 FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL 120
FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL
Sbjct: 61 FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL 120
Query: 121 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV 180
ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV
Sbjct: 121 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV 180
Query: 181 HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE 240
HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE
Sbjct: 181 HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE 240
Query: 241 QNVSCPEVSDIINFIFADRKRPLSNWGNSKK 271
QNVSCPEVSDIINFIFADRKRPLSNWGNSKK
Sbjct: 241 QNVSCPEVSDIINFIFADRKRPLSNWGNSKK 271
>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 347
Score = 55.1 bits (131), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68
+I P+A+V G IG + +GP +G+ V IG + + + + IG+ +
Sbjct: 136 VIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGV 194
Query: 69 VLGGDT------QSKYHNFVGT-ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLA 121
+G D S H V +++ K I I+RGT++ TI+G+N
Sbjct: 195 RIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDN 251
Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181
+ H+ +G G ++ + V IAG + D V+ GG + + +IG I +GV+
Sbjct: 252 QVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311
Query: 182 DVIPYG 187
D IP G
Sbjct: 312 D-IPAG 316
Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181
+ + D K+ +G+V++ ++ V + + G GS + RIG+ IG + +
Sbjct: 122 QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS 181
Query: 182 DVI 184
+I
Sbjct: 182 SLI 184
>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 442
Score = 33.1 bits (74), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 18 EGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSK 77
EG IG ++IGPF + E I V +IG+F +V + G ++
Sbjct: 301 EGVHIGKKTIIGPFARIRQETTIEKNV------------RIGNFCEVKKATIKEG-SKIN 347
Query: 78 YHNFVGTELLVGKKCVIREG-VTIN-RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGI 135
+ ++VG + +VGK I G +T N GT +Y KT + +N F +NS + +G G
Sbjct: 348 HLSYVG-DSVVGKNVNIGAGTITCNYDGTHKY--KTHINENAFIGSNSSLIAPITIGQGT 404
Query: 136 VLSNNVMIAGHVIVDD 151
++ +G +I D
Sbjct: 405 YVA-----SGSIITQD 415
Score = 31.6 bits (70), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
+G II P A + + I N IG FC V + I G + I+H G + +G
Sbjct: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEV-KKATIKEGSK-INHLSYVGDSVVGKNVN 362
Query: 64 VFPMAVLGG-DTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD---NNFF 119
+ + D KY + +G + +TI +GT G I D N+
Sbjct: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422
Query: 120 LANS 123
A S
Sbjct: 423 FARS 426
>gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage associated protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 110
Score = 30.8 bits (68), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
M +N ++ A V + A + N+ + F V S E+ + V K+G + K
Sbjct: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVS------DNTYVRDNAKVGGYAK 54
Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIV 113
V A +GG+ + VG + V VI + RG GG T+V
Sbjct: 55 VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARV-RGNAVVGGDTVV 103
Score = 27.3 bits (59), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT------RIGKYAFIGG 175
N++V + K+G +S N + G+ IV D GG + V FT R+ A +GG
Sbjct: 40 NTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGG 99
Query: 176 MTGVVHDVI 184
T V D +
Sbjct: 100 DTVVEGDTV 108
Score = 23.1 bits (48), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61
+ + +N + A V A + N+ +G V E+G +I V++G +
Sbjct: 35 AEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR---- 90
Query: 62 TKVFPMAVLGGDT 74
V AV+GGDT
Sbjct: 91 --VRGNAVVGGDT 101
Score = 22.7 bits (47), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 123 SHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMT 177
+ V + ++ + + +N + G+ V GG + V +G AF+ G T
Sbjct: 29 AQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFT 83
>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 350
Score = 28.9 bits (63), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 11 HPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPM 67
P +V+EG++I P S++ P G + + AG+++ S V G + K F M
Sbjct: 209 QPQTIVQEGSIIDPESVLNP--QFGKPIRVAAGMDIRS---VLGIHSVPMIEKSFSM 260
>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 285
Score = 28.9 bits (63), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
+G ++ P + V GA IG S+I + VGS +IG V + + G +
Sbjct: 123 IGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLE------ 175
Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNN 117
+ G T + + F+G + + C+IREG + G V G T + D N
Sbjct: 176 ----PIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG-VFIGKSTKIIDRN 224
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 33/187 (17%)
Query: 40 IGAGVELI--SHCVVAGKTKIGDFTKV--------FPMAVLGGDTQSKYHNFVGTELLVG 89
IG + +I SH V G+ +GDF + P+ +LG + +F+ E L+
Sbjct: 274 IGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLN 333
Query: 90 ---KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSH----------VAHDCK---LGN 133
+K I+ V N ++ IV +N F N H +A K +G
Sbjct: 334 ILNEKIEIQNAV--NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGE 391
Query: 134 GIVLSNNVMIAGHVIVDDR--VVFGGGSAVHQFTRIGKYAFIGGM---TGVVHDVIPYGI 188
V + V + + D + ++ G + + T+ IG + T + +D + Y I
Sbjct: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451
Query: 189 LNGNPGA 195
L GNP A
Sbjct: 452 LYGNPNA 458
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 23.9 bits (50), Expect = 3.4, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 239 REQNVSCPEVSDIINFIFADRKRPL 263
+EQN P + + NFI D + P+
Sbjct: 597 KEQNYCRPIIDNSTNFIVKDGRHPI 621
>gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 306
Score = 22.7 bits (47), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 49 HCVVAGKTKIGDFT 62
H V AGK IGDFT
Sbjct: 123 HVVNAGKVMIGDFT 136
>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
[Candidatus Liberibacter asiaticus str. psy62]
Length = 364
Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 93 VIREGVTINRGTVEYGG 109
++++G+ I RG YGG
Sbjct: 35 IVKDGIVIGRGVTAYGG 51
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,018
Number of Sequences: 1233
Number of extensions: 7900
Number of successful extensions: 61
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 21
length of query: 271
length of database: 328,796
effective HSP length: 73
effective length of query: 198
effective length of database: 238,787
effective search space: 47279826
effective search space used: 47279826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)