HHsearch alignment for GI: 255764482 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=99.21  E-value=7.7e-11  Score=80.37  Aligned_cols=86  Identities=19%  Similarity=0.197  Sum_probs=70.3

Q ss_pred             HHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             24389985578999587843899999986799889999889899998899999806645222530200444235310000
Q gi|255764482|r    4 ASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNL   83 (225)
Q Consensus         4 a~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   83 (225)
T Consensus        23 v~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~------~~~n~~vi~~DaLk~d~~~l~   94 (259)
T COG0030          23 VEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA------PYDNLTVINGDALKFDFPSLA   94 (259)
T ss_pred             HHHCCCCCCCEEEEECCCCCHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHC------CCCCEEEEECCHHCCCCHHHC
T ss_conf             98557899986999789877889999960--6957999968899999997506------566559994724247513515


Q ss_pred             CCCCCCCCCEEEECCCCCCC
Q ss_conf             12357652057722654464
Q gi|255764482|r   84 AGLKNNFYDHVIMNPPFNER  103 (225)
Q Consensus        84 ~~~~~~~fDlii~nPPy~~~  103 (225)
T Consensus        95 ------~~~~vVaNlPY~Is  108 (259)
T COG0030          95 ------QPYKVVANLPYNIS  108 (259)
T ss_pred             ------CCCEEEECCCCCCC
T ss_conf             ------78889980897656