HHsearch alignment for GI: 255764482 and conserved domain: COG0293
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.81 E-value=7.2e-08 Score=63.60 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=97.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 98557899958784389999998679-98899998898999988999998066452225302004442353100001235
Q gi|255764482|r 9 ATGSFHLADLGAGAGAAGLAVASRLH-EAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLK 87 (225)
Q Consensus 9 ~~~~~~VLDlGcG~G~~~l~la~r~~-~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 87 (225)
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~---------------~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------------IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC---------------CCCCEEEEEECCCCCHHHHHHHHC
T ss_conf 05898799838799849999999738888489997754556---------------789468841324843799999870
Q ss_pred CC-CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEE-ECCHHHHHHHHHHHHCCCCCEE
Q ss_conf 76-520577226544644654788545565205668989999999986246983787-0288889999998521788469
Q gi|255764482|r 88 NN-FYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSL-IARPQSLIQIVNACARRIGSLE 165 (225)
Q Consensus 88 ~~-~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~-i~~~~~l~~~l~~~~~~~~~~~ 165 (225)
T Consensus 108 ~~~~~DvV~sD~ap-~~~g~~~~Dh~r------~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~ 180 (205)
T COG0293 108 GGAPVDVVLSDMAP-NTSGNRSVDHAR------SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVK 180 (205)
T ss_pred CCCCCCEEEECCCC-CCCCCCCCCHHH------HHHHHHHHHHHHHHEECCCCEEEEEEEECCCHHHHHHHHHHHHCEEE
T ss_conf 77876668725887-767872200889------99999999999987257898399999757987999999998632067
Q ss_pred EE-EECCCCCCC
Q ss_conf 99-814589698
Q gi|255764482|r 166 IT-PLHPREGEC 176 (225)
Q Consensus 166 i~-~v~~~~~~~ 176 (225)
T Consensus 181 ~~KP~aSR~~S~ 192 (205)
T COG0293 181 IFKPKASRKRSR 192 (205)
T ss_pred EECCCCCCCCCC
T ss_conf 735855467771