HHsearch alignment for GI: 255764482 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=99.73 E-value=7e-17 Score=114.46 Aligned_cols=129 Identities=16% Similarity=0.265 Sum_probs=96.6
Q ss_pred CCHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECC-CCCCCCCC
Q ss_conf 66243899855789995878438999999867998899998898999988999998066452225302004-44235310
Q gi|255764482|r 2 ILASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEV-DVTLVGEN 80 (225)
Q Consensus 2 lLa~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~-D~~~~~~~ 80 (225)
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~---~-~~~~~~~Da~~lp-- 259 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIE---D-YPVLKVLDATNLP-- 259 (347)
T ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHC--CCEEEECCHHHHHHHHHHHHHHHHCCC---C-EEEEEECCCCCCC--
T ss_conf 9877741646987645767834888836642--756760323799985566415662767---6-1688730221277--
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf 000123576520577226544644654788545565205668989999999986246983787028888999
Q gi|255764482|r 81 RNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIARPQSLIQ 152 (225)
Q Consensus 81 ~~~~~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~~~~l~~ 152 (225)
T Consensus 260 -----l~~~~vdaIatDPPYGrst~~~~~~---------l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~ 317 (347)
T COG1041 260 -----LRDNSVDAIATDPPYGRSTKIKGEG---------LDELYEEALESASEVLKPGGRIVFAAPRDPRHE 317 (347)
T ss_pred -----CCCCCCCEEEECCCCCCCCCCCCCC---------HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf -----8877423588469987100245552---------899999999999987304848999617860556