HHsearch alignment for GI: 255764482 and conserved domain: COG1041

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=99.73  E-value=7e-17  Score=114.46  Aligned_cols=129  Identities=16%  Similarity=0.265  Sum_probs=96.6

Q ss_pred             CCHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECC-CCCCCCCC
Q ss_conf             66243899855789995878438999999867998899998898999988999998066452225302004-44235310
Q gi|255764482|r    2 ILASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEV-DVTLVGEN   80 (225)
Q Consensus         2 lLa~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~-D~~~~~~~   80 (225)
T Consensus       188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~---~-~~~~~~~Da~~lp--  259 (347)
T COG1041         188 AMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIE---D-YPVLKVLDATNLP--  259 (347)
T ss_pred             HHHHHHCCCCCCEEECCCCCCCHHHHHHHHC--CCEEEECCHHHHHHHHHHHHHHHHCCC---C-EEEEEECCCCCCC--
T ss_conf             9877741646987645767834888836642--756760323799985566415662767---6-1688730221277--


Q ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf             000123576520577226544644654788545565205668989999999986246983787028888999
Q gi|255764482|r   81 RNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIARPQSLIQ  152 (225)
Q Consensus        81 ~~~~~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~~~~l~~  152 (225)
T Consensus       260 -----l~~~~vdaIatDPPYGrst~~~~~~---------l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~  317 (347)
T COG1041         260 -----LRDNSVDAIATDPPYGRSTKIKGEG---------LDELYEEALESASEVLKPGGRIVFAAPRDPRHE  317 (347)
T ss_pred             -----CCCCCCCEEEECCCCCCCCCCCCCC---------HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf             -----8877423588469987100245552---------899999999999987304848999617860556