HHsearch alignment for GI: 255764482 and conserved domain: COG1352
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=97.65 E-value=0.00044 Score=42.23 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCCEEEEECCCHHH----HHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHH-----HCCC-C--------CC---
Q ss_conf 55789995878438----9999998679-----98899998898999988999998-----0664-5--------22---
Q gi|255764482|r 11 GSFHLADLGAGAGA----AGLAVASRLH-----EAQILLAERSPLMAHYARKTLAL-----PANA-Q--------IS--- 64 (225)
Q Consensus 11 ~~~~VLDlGcG~G~----~~l~la~r~~-----~~~v~gvD~~~~~~~~A~~n~~~-----~~~~-~--------~~--- 64 (225)
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCHHHHHHHEEECCCCC
T ss_conf 85399966768995589999999987332258743899997999999998628887667654499899963376469984
Q ss_pred --------CCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf --------253020044423531000012357652057722654464465478854556520566898999999998624
Q gi|255764482|r 65 --------KRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMR 136 (225)
Q Consensus 65 --------~~~~~~~~D~~~~~~~~~~~~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLk 136 (225)
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~-------~~~~~~fD~IfCRNVL----------------IYFd~~~q~~il~~f~~~L~ 232 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDD-------SPFLGKFDLIFCRNVL----------------IYFDEETQERILRRFADSLK 232 (268)
T ss_pred EEECHHHHCCCEEEECCCCCC-------CCCCCCCCEEEECCEE----------------EEECHHHHHHHHHHHHHHHC
T ss_conf 798768762437753578887-------5435898889984148----------------86378999999999999748
Q ss_pred CCCEEEEEC
Q ss_conf 698378702
Q gi|255764482|r 137 SSGQLSLIA 145 (225)
Q Consensus 137 pgG~~~~i~ 145 (225)
T Consensus 233 ~gG~LflG~ 241 (268)
T COG1352 233 PGGLLFLGH 241 (268)
T ss_pred CCCEEEECC
T ss_conf 997899826