HHsearch alignment for GI: 255764482 and conserved domain: PRK03522
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=99.65 E-value=2.3e-14 Score=100.29 Aligned_cols=147 Identities=16% Similarity=0.077 Sum_probs=111.0
Q ss_pred HHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 43899855789995878438999999867998899998898999988999998066452225302004442353100001
Q gi|255764482|r 5 SLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLA 84 (225)
Q Consensus 5 ~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 84 (225)
T Consensus 227 ~~~~~~~~~~vlDlycG~G~~sl~lA~~--~~~V~gvE~~~~av~~A~~na~~ngi~n----v~f~~~d~~~~~~----- 295 (375)
T PRK03522 227 DWVRELPPKSMWDLFCGVGGFGLHCATP--DMQLTGIEISAEAIACAKQSAAELGLTN----VQFQALDSTQFAT----- 295 (375)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHC--CCEEEEEEECHHHHHHHHHHHHHCCCCC----EEEEECCHHHHHH-----
T ss_conf 9863158978999657853888987641--7889999845999999999999869987----6999737788876-----
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCE
Q ss_conf 23576520577226544644654788545565205668989999999986246983787028888999999852178846
Q gi|255764482|r 85 GLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIGSL 164 (225)
Q Consensus 85 ~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~~~~l~~~l~~~~~~~~~~ 164 (225)
T Consensus 296 -~~~~~~d~vvvDPPR~G--------------------l~~~~~~~l~~-~~p~~IvYVSCnP~TlaRDl~~L-~gy~l~ 352 (375)
T PRK03522 296 -AQGEVPELVLVNPPRRG--------------------IGKPLCDYLSQ-MAPRFILYSSCNAQTMAKDLAHL-PGYRIE 352 (375)
T ss_pred -HCCCCCCEEEECCCCCC--------------------CHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHH-CCCEEE
T ss_conf -34568978998999777--------------------51999999986-59996999907989999998884-397688
Q ss_pred EEEEECCCCCCCCEEEEEEEE
Q ss_conf 999814589698309999999
Q gi|255764482|r 165 EITPLHPREGECASRILVTGR 185 (225)
Q Consensus 165 ~i~~v~~~~~~~~~~vlv~~~ 185 (225)
T Consensus 353 ~v~~~DmFPqT~HvE~v~lL~ 373 (375)
T PRK03522 353 RVQLFDMFPHTAHYEVLTLLV 373 (375)
T ss_pred EEEEECCCCCCCCEEEEEEEE
T ss_conf 999953698997189999999