HHsearch alignment for GI: 255764482 and conserved domain: PRK11088

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=99.11  E-value=1.4e-09  Score=73.21  Aligned_cols=108  Identities=15%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             557899958784389999998679---98899998898999988999998066452225302004442353100001235
Q gi|255764482|r   11 GSFHLADLGAGAGAAGLAVASRLH---EAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLK   87 (225)
Q Consensus        11 ~~~~VLDlGcG~G~~~l~la~r~~---~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   87 (225)
T Consensus        85 ~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~---------~~~~~~Va~~~~l-------P~~  148 (272)
T PRK11088         85 KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-------PFA  148 (272)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCC---------CCCEEEEEECCCC-------CCC
T ss_conf             786488815877789999999741157873799811799999996268---------8854999610018-------887


Q ss_pred             CCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHH-HHHHHHHHHC
Q ss_conf             76520577226544644654788545565205668989999999986246983787028888-9999998521
Q gi|255764482|r   88 NNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIARPQS-LIQIVNACAR  159 (225)
Q Consensus        88 ~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~~~~-l~~~l~~~~~  159 (225)
T Consensus       149 d~s~D~vl~vFs--P-------------------~----~~~Ef~RvLkp~G~li~V~P~~~HL~eLre~lY~  196 (272)
T PRK11088        149 DQSLDAIIRIYA--P-------------------C----KAEELARVVKPGGIVITVTPGPRHLFELKGLIYD  196 (272)
T ss_pred             CCCCEEEEEEEC--C-------------------C----CHHHHHHEECCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             665408999843--7-------------------8----8588612463797899997888899999999751