HHsearch alignment for GI: 255764482 and conserved domain: PRK11088
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=99.11 E-value=1.4e-09 Score=73.21 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=75.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 557899958784389999998679---98899998898999988999998066452225302004442353100001235
Q gi|255764482|r 11 GSFHLADLGAGAGAAGLAVASRLH---EAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLK 87 (225)
Q Consensus 11 ~~~~VLDlGcG~G~~~l~la~r~~---~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 87 (225)
T Consensus 85 ~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~---------~~~~~~Va~~~~l-------P~~ 148 (272)
T PRK11088 85 KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-------PFA 148 (272)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCC---------CCCEEEEEECCCC-------CCC
T ss_conf 786488815877789999999741157873799811799999996268---------8854999610018-------887
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHH-HHHHHHHHHC
Q ss_conf 76520577226544644654788545565205668989999999986246983787028888-9999998521
Q gi|255764482|r 88 NNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIARPQS-LIQIVNACAR 159 (225)
Q Consensus 88 ~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~~~~-l~~~l~~~~~ 159 (225)
T Consensus 149 d~s~D~vl~vFs--P-------------------~----~~~Ef~RvLkp~G~li~V~P~~~HL~eLre~lY~ 196 (272)
T PRK11088 149 DQSLDAIIRIYA--P-------------------C----KAEELARVVKPGGIVITVTPGPRHLFELKGLIYD 196 (272)
T ss_pred CCCCEEEEEEEC--C-------------------C----CHHHHHHEECCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 665408999843--7-------------------8----8588612463797899997888899999999751