HHsearch alignment for GI: 255764482 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=94.11 E-value=0.4 Score=25.57 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=72.3
Q ss_pred HHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 43899855789995878438999999867998899998898999988999998066452225302004442353100001
Q gi|255764482|r 5 SLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLA 84 (225)
Q Consensus 5 ~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 84 (225)
T Consensus 486 ~~~~~qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~lLd---pL~RP~Ll~~~~~~l~~L---- 558 (726)
T PRK13341 486 SGITWQRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDLLD---PLGRPVLLDAGLLALKYL---- 558 (726)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC---HHCCCCEEECCCHHHHHC----
T ss_conf 3366563435998338512652677861899866998378889999999987468---111971121671146537----
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 2357652057722654464465478854556520566898999999998624698378702
Q gi|255764482|r 85 GLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIA 145 (225)
Q Consensus 85 ~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~ 145 (225)
T Consensus 559 -~~~~~FE~IgGR~~~~~----------------l~~~~~~~~~q~L~~~l~p~g~l~Ll~ 602 (726)
T PRK13341 559 -PANLQFEWIGGRNGLDD----------------LLYKADEELWQQLTEKLTPNGGLRLLI 602 (726)
T ss_pred -CCCCCEEEEECCCCCCC----------------CCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf -98764247833320023----------------422569999999998659986699863