HHsearch alignment for GI: 255764482 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=94.11  E-value=0.4  Score=25.57  Aligned_cols=117  Identities=13%  Similarity=0.036  Sum_probs=72.3

Q ss_pred             HHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             43899855789995878438999999867998899998898999988999998066452225302004442353100001
Q gi|255764482|r    5 SLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLA   84 (225)
Q Consensus         5 ~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   84 (225)
T Consensus       486 ~~~~~qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~lLd---pL~RP~Ll~~~~~~l~~L----  558 (726)
T PRK13341        486 SGITWQRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDLLD---PLGRPVLLDAGLLALKYL----  558 (726)
T ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC---HHCCCCEEECCCHHHHHC----
T ss_conf             3366563435998338512652677861899866998378889999999987468---111971121671146537----


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             2357652057722654464465478854556520566898999999998624698378702
Q gi|255764482|r   85 GLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIA  145 (225)
Q Consensus        85 ~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~  145 (225)
T Consensus       559 -~~~~~FE~IgGR~~~~~----------------l~~~~~~~~~q~L~~~l~p~g~l~Ll~  602 (726)
T PRK13341        559 -PANLQFEWIGGRNGLDD----------------LLYKADEELWQQLTEKLTPNGGLRLLI  602 (726)
T ss_pred             -CCCCCEEEEECCCCCCC----------------CCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             -98764247833320023----------------422569999999998659986699863