HHsearch alignment for GI: 255764482 and conserved domain: TIGR00452

>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=97.22  E-value=0.0038  Score=36.98  Aligned_cols=107  Identities=21%  Similarity=0.223  Sum_probs=63.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             98557899958784389999998679988999988989999889999980664522253020044423531000012357
Q gi|255764482|r    9 ATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLKN   88 (225)
Q Consensus         9 ~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   88 (225)
T Consensus       119 pL~~~~i~DVGC~~GY~~~~M~~~--Gak-~~VG~DP~~L~~~QFE~~~~l-l~~~~~~~l~~LGiE------~l~~~~p  188 (316)
T TIGR00452       119 PLKGRTILDVGCGSGYHLWRMLGE--GAK-LLVGIDPTELFLCQFEAVRKL-LDNDKRAILLPLGIE------QLQELKP  188 (316)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHC--CCC-EEEECCHHHHHHHHHHHHHHH-HCCCCEEEEECCCHH------HHHHCCC
T ss_conf             545777898336870688977620--782-787436578999999999987-242355754036702------2232076


Q ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             6520577226544644654788545565205668989999999986246983787
Q gi|255764482|r   89 NFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSL  143 (225)
Q Consensus        89 ~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~  143 (225)
T Consensus       189 nAFD~vFs~GVLYHR------------------kSPLe~L~~L~~~L~~~GELVL  225 (316)
T TIGR00452       189 NAFDTVFSLGVLYHR------------------KSPLEHLKQLKDQLVKKGELVL  225 (316)
T ss_pred             CCCEEEEECCHHHCC------------------CCCHHHHHHHHHHHHHCCCEEE
T ss_conf             412031220202115------------------5708999999999875793586