HHsearch alignment for GI: 255764482 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=98.94 E-value=1e-09 Score=74.06 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=85.8
Q ss_pred CCCCEEEEECCCHHHHHHHHH----HHC-CCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 855789995878438999999----867-998899998898999988999998066452225302004442353100001
Q gi|255764482|r 10 TGSFHLADLGAGAGAAGLAVA----SRL-HEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLA 84 (225)
Q Consensus 10 ~~~~~VLDlGcG~G~~~l~la----~r~-~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 84 (225)
T Consensus 236 ~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~----~~F~aLDsa~f~~----- 306 (386)
T TIGR02085 236 LPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLEN----LSFAALDSAKFAT----- 306 (386)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHH-----
T ss_conf 5711032010465412789989876415897044313437789999999998735332----1045445799998-----
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCE
Q ss_conf 23576520577226544644654788545565205668989999999986246983787028888999999852178846
Q gi|255764482|r 85 GLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIGSL 164 (225)
Q Consensus 85 ~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~~~~l~~~l~~~~~~~~~~ 164 (225)
T Consensus 307 ~~~e~~PeLVlVNPPRR-----------------GiG~eL~~~L----~~~aP~fILYSSCNa~TM~KDi~~L-~~Y~~~ 364 (386)
T TIGR02085 307 AQAESVPELVLVNPPRR-----------------GIGKELCDYL----SQLAPKFILYSSCNAQTMAKDIAEL-SGYKIE 364 (386)
T ss_pred HHCCCCCCEEEECCCCC-----------------CCCHHHHHHH----HHCCCCEEEECCCCHHHHHHHHHHC-CCCCEE
T ss_conf 62368896577678888-----------------8760689999----7508862662167722589999755-688357
Q ss_pred EEEEECCCCC
Q ss_conf 9998145896
Q gi|255764482|r 165 EITPLHPREG 174 (225)
Q Consensus 165 ~i~~v~~~~~ 174 (225)
T Consensus 365 rvQlFDMFPh 374 (386)
T TIGR02085 365 RVQLFDMFPH 374 (386)
T ss_pred EEEEECCCCC
T ss_conf 7653307898