HHsearch alignment for GI: 255764482 and conserved domain: TIGR03534

>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.90  E-value=4.4e-22  Score=143.81  Aligned_cols=153  Identities=22%  Similarity=0.260  Sum_probs=110.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             55789995878438999999867998899998898999988999998066452225302004442353100001235765
Q gi|255764482|r   11 GSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLKNNF   90 (225)
Q Consensus        11 ~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   90 (225)
T Consensus        87 ~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~----~v~~~~~d~~~~--------~~~~~  154 (251)
T TIGR03534        87 GPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLE----NVRFLKSDWFEP--------LPGGK  154 (251)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCC----EEEEEECCHHHC--------CCCCC
T ss_conf             898699955671699999999679978999989879999999999980998----268651314321--------56898


Q ss_pred             CCEEEECCCCCCCCCCCC--CCH---HHHHHHCCCC---CCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf             205772265446446547--885---4556520566---89899999999862469837870288889999998521788
Q gi|255764482|r   91 YDHVIMNPPFNERIGTMT--PDK---IKEEAHVMLE---DSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIG  162 (225)
Q Consensus        91 fDlii~nPPy~~~~~~~~--~~~---~~~~a~~~~~---~~~~~~~~~a~~lLkpgG~~~~i~~~~~l~~~l~~~~~~~~  162 (225)
T Consensus       155 fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Eig~~q~~~v~~l~~~-~g  233 (251)
T TIGR03534       155 FDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEIGYDQGEAVRALFEA-AG  233 (251)
T ss_pred             CCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHH-CC
T ss_conf             66899789988745666328601026729997179846999999999999853679889999683789999999996-89


Q ss_pred             CEEEEEECCCCCCC
Q ss_conf             46999814589698
Q gi|255764482|r  163 SLEITPLHPREGEC  176 (225)
Q Consensus       163 ~~~i~~v~~~~~~~  176 (225)
T Consensus       234 f~~i~~~kDl~g~~  247 (251)
T TIGR03534       234 FADVETRKDLAGKD  247 (251)
T ss_pred             CCEEEEEECCCCCC
T ss_conf             97068850789897