HHsearch alignment for GI: 255764482 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.90 E-value=4.4e-22 Score=143.81 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=110.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 55789995878438999999867998899998898999988999998066452225302004442353100001235765
Q gi|255764482|r 11 GSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLKNNF 90 (225)
Q Consensus 11 ~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 90 (225)
T Consensus 87 ~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~----~v~~~~~d~~~~--------~~~~~ 154 (251)
T TIGR03534 87 GPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLE----NVRFLKSDWFEP--------LPGGK 154 (251)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCC----EEEEEECCHHHC--------CCCCC
T ss_conf 898699955671699999999679978999989879999999999980998----268651314321--------56898
Q ss_pred CCEEEECCCCCCCCCCCC--CCH---HHHHHHCCCC---CCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 205772265446446547--885---4556520566---89899999999862469837870288889999998521788
Q gi|255764482|r 91 YDHVIMNPPFNERIGTMT--PDK---IKEEAHVMLE---DSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIG 162 (225)
Q Consensus 91 fDlii~nPPy~~~~~~~~--~~~---~~~~a~~~~~---~~~~~~~~~a~~lLkpgG~~~~i~~~~~l~~~l~~~~~~~~ 162 (225)
T Consensus 155 fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Eig~~q~~~v~~l~~~-~g 233 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEIGYDQGEAVRALFEA-AG 233 (251)
T ss_pred CCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHH-CC
T ss_conf 66899789988745666328601026729997179846999999999999853679889999683789999999996-89
Q ss_pred CEEEEEECCCCCCC
Q ss_conf 46999814589698
Q gi|255764482|r 163 SLEITPLHPREGEC 176 (225)
Q Consensus 163 ~~~i~~v~~~~~~~ 176 (225)
T Consensus 234 f~~i~~~kDl~g~~ 247 (251)
T TIGR03534 234 FADVETRKDLAGKD 247 (251)
T ss_pred CCEEEEEECCCCCC
T ss_conf 97068850789897