HHsearch alignment for GI: 255764482 and conserved domain: pfam00398
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=98.96 E-value=4.3e-09 Score=70.51 Aligned_cols=86 Identities=24% Similarity=0.272 Sum_probs=68.0
Q ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 24389985578999587843899999986799889999889899998899999806645222530200444235310000
Q gi|255764482|r 4 ASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNL 83 (225)
Q Consensus 4 a~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 83 (225)
T Consensus 23 v~~~~~~~~d~VlEIGPG~G~LT~~L~~~--~~~v~aiE~D~~l~~~L~~~~~~------~~~~~ii~~D~l~~d~~--- 91 (258)
T pfam00398 23 VDKANLQESDTVLEIGPGKGALTEELAKR--AKQVVAIEIDPRLAKRLQKKLAL------HPNVEVVHQDFLKFSFP--- 91 (258)
T ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHCC------CCCEEEEECCHHCCCCC---
T ss_conf 99708999997999799623999999961--69479995447799999986442------89779996630105754---
Q ss_pred CCCCCCCCCEEEECCCCCCCC
Q ss_conf 123576520577226544644
Q gi|255764482|r 84 AGLKNNFYDHVIMNPPFNERI 104 (225)
Q Consensus 84 ~~~~~~~fDlii~nPPy~~~~ 104 (225)
T Consensus 92 ----~~~~~~vvgNLPY~Iss 108 (258)
T pfam00398 92 ----KHEPFLVVGNIPYNITT 108 (258)
T ss_pred ----CCCCEEEEECCCCCCCH
T ss_conf ----57861689448863417