HHsearch alignment for GI: 255764482 and conserved domain: pfam00398

>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=98.96  E-value=4.3e-09  Score=70.51  Aligned_cols=86  Identities=24%  Similarity=0.272  Sum_probs=68.0

Q ss_pred             HHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             24389985578999587843899999986799889999889899998899999806645222530200444235310000
Q gi|255764482|r    4 ASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNL   83 (225)
Q Consensus         4 a~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   83 (225)
T Consensus        23 v~~~~~~~~d~VlEIGPG~G~LT~~L~~~--~~~v~aiE~D~~l~~~L~~~~~~------~~~~~ii~~D~l~~d~~---   91 (258)
T pfam00398        23 VDKANLQESDTVLEIGPGKGALTEELAKR--AKQVVAIEIDPRLAKRLQKKLAL------HPNVEVVHQDFLKFSFP---   91 (258)
T ss_pred             HHHCCCCCCCEEEEECCCHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHCC------CCCEEEEECCHHCCCCC---
T ss_conf             99708999997999799623999999961--69479995447799999986442------89779996630105754---


Q ss_pred             CCCCCCCCCEEEECCCCCCCC
Q ss_conf             123576520577226544644
Q gi|255764482|r   84 AGLKNNFYDHVIMNPPFNERI  104 (225)
Q Consensus        84 ~~~~~~~fDlii~nPPy~~~~  104 (225)
T Consensus        92 ----~~~~~~vvgNLPY~Iss  108 (258)
T pfam00398        92 ----KHEPFLVVGNIPYNITT  108 (258)
T ss_pred             ----CCCCEEEEECCCCCCCH
T ss_conf             ----57861689448863417