HHsearch alignment for GI: 255764482 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=99.13 E-value=1.4e-10 Score=78.85 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=81.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 99855789995878438999999867998899998898999988999998066452225302004442353100001235
Q gi|255764482|r 8 NATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLK 87 (225)
Q Consensus 8 ~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 87 (225)
T Consensus 40 p~~ry~~alE~GCa~G~lT~~LA~RCd--rLla~Dvs~~Av~~Ar~Rla~------~~hV~v~~~~vp~~--------wP 103 (201)
T pfam05401 40 AQGTIANALEVGCAAGAFTERLAPYCQ--RLTVIDVMPEAIARARLRMKK------WSHISWIVSDVQQF--------ST 103 (201)
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHCC------CCCCEEEECCCCCC--------CC
T ss_conf 834330020435662487899999874--673213629999999998557------99828982566665--------99
Q ss_pred CCCCCEEEECCC-CCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 765205772265-44644654788545565205668989999999986246983787028
Q gi|255764482|r 88 NNFYDHVIMNPP-FNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIAR 146 (225)
Q Consensus 88 ~~~fDlii~nPP-y~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~ 146 (225)
T Consensus 104 ~~~FDLIV~SEVlYY----------------L~d~a~lr~~~~~~v~~LaP~G~Lvfgsa 147 (201)
T pfam05401 104 NELFDLIVVAEVLYY----------------LGDVAEMRGAVRNLVSMLAPDGQLVFGSA 147 (201)
T ss_pred CCCEEEEEEEHHHHH----------------HCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 888627975147786----------------18799999999999997189965997304