HHsearch alignment for GI: 255764482 and conserved domain: pfam05958

>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=99.55  E-value=5.4e-13  Score=92.53  Aligned_cols=145  Identities=14%  Similarity=0.121  Sum_probs=100.2

Q ss_pred             HCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC---
Q ss_conf             38998557899958784389999998679988999988989999889999980664522253020044423531000---
Q gi|255764482|r    6 LVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRN---   82 (225)
Q Consensus         6 ~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~---   82 (225)
T Consensus       193 ~~~~~~~~-vlDlYcG~Gtfsl~lA~~--~~~V~GvE~~~~AV~~A~~Na~~N~i~N----v~f~~~~~~~~~~~~~~~~  265 (353)
T pfam05958       193 VTQGSKGD-LLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAANNIDN----VQIIRMSAEEFTQAMNGVR  265 (353)
T ss_pred             HHHCCCCC-EEEEECCCCHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHCCCCC----EEEEECCHHHHHHHHHCCC
T ss_conf             86268995-899846888888999864--7879999625999999999899869986----4999728999999875242


Q ss_pred             ----C--CCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf             ----0--1235765205772265446446547885455652056689899999999862469837870288889999998
Q gi|255764482|r   83 ----L--AGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNA  156 (225)
Q Consensus        83 ----~--~~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~~~~l~~~l~~  156 (225)
T Consensus       266 ~~~~~~~i~~~~~~~d~vvlDPPR~--------------------G~~~~~~~~i---~~~~rIvYVSCnP~TlaRDl~~  322 (353)
T pfam05958       266 EFRRLKGIDLKSYNCSTIFVDPPRA--------------------GLDPDTCKLV---QAYERILYISCNPETLKANLEQ  322 (353)
T ss_pred             HHHHCCCCCCCCCCCCCEEECCCCC--------------------CCHHHHHHHH---HCCCCEEEEECCHHHHHHHHHH
T ss_conf             2332036663224677258489877--------------------7739999998---4699689994899999999999


Q ss_pred             HHCCCCCEEEEEECCCCCCCCEEE
Q ss_conf             521788469998145896983099
Q gi|255764482|r  157 CARRIGSLEITPLHPREGECASRI  180 (225)
Q Consensus       157 ~~~~~~~~~i~~v~~~~~~~~~~v  180 (225)
T Consensus       323 L~~~Y~l~~v~pvDmFPqT~HvE~  346 (353)
T pfam05958       323 LSETHRVERFALFDQFPYTHHMEC  346 (353)
T ss_pred             HHCCCEEEEEEEECCCCCCCEEEE
T ss_conf             840647879998236999971898