HHsearch alignment for GI: 255764482 and conserved domain: pfam05958
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=99.55 E-value=5.4e-13 Score=92.53 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=100.2
Q ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC---
Q ss_conf 38998557899958784389999998679988999988989999889999980664522253020044423531000---
Q gi|255764482|r 6 LVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRN--- 82 (225)
Q Consensus 6 ~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~--- 82 (225)
T Consensus 193 ~~~~~~~~-vlDlYcG~Gtfsl~lA~~--~~~V~GvE~~~~AV~~A~~Na~~N~i~N----v~f~~~~~~~~~~~~~~~~ 265 (353)
T pfam05958 193 VTQGSKGD-LLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAANNIDN----VQIIRMSAEEFTQAMNGVR 265 (353)
T ss_pred HHHCCCCC-EEEEECCCCHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHCCCCC----EEEEECCHHHHHHHHHCCC
T ss_conf 86268995-899846888888999864--7879999625999999999899869986----4999728999999875242
Q ss_pred ----C--CCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf ----0--1235765205772265446446547885455652056689899999999862469837870288889999998
Q gi|255764482|r 83 ----L--AGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNA 156 (225)
Q Consensus 83 ----~--~~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i~~~~~l~~~l~~ 156 (225)
T Consensus 266 ~~~~~~~i~~~~~~~d~vvlDPPR~--------------------G~~~~~~~~i---~~~~rIvYVSCnP~TlaRDl~~ 322 (353)
T pfam05958 266 EFRRLKGIDLKSYNCSTIFVDPPRA--------------------GLDPDTCKLV---QAYERILYISCNPETLKANLEQ 322 (353)
T ss_pred HHHHCCCCCCCCCCCCCEEECCCCC--------------------CCHHHHHHHH---HCCCCEEEEECCHHHHHHHHHH
T ss_conf 2332036663224677258489877--------------------7739999998---4699689994899999999999
Q ss_pred HHCCCCCEEEEEECCCCCCCCEEE
Q ss_conf 521788469998145896983099
Q gi|255764482|r 157 CARRIGSLEITPLHPREGECASRI 180 (225)
Q Consensus 157 ~~~~~~~~~i~~v~~~~~~~~~~v 180 (225)
T Consensus 323 L~~~Y~l~~v~pvDmFPqT~HvE~ 346 (353)
T pfam05958 323 LSETHRVERFALFDQFPYTHHMEC 346 (353)
T ss_pred HHCCCEEEEEEEECCCCCCCEEEE
T ss_conf 840647879998236999971898