HHsearch alignment for GI: 255764482 and conserved domain: pfam06962

>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=98.45  E-value=5.9e-06  Score=52.81  Aligned_cols=129  Identities=11%  Similarity=0.124  Sum_probs=80.6

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf             89999889899998899999806645222530200444235310000123576520577226544644654788545565
Q gi|255764482|r   37 QILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEA  116 (225)
Q Consensus        37 ~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a  116 (225)
T Consensus         1 hV~aFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~~He~l~~~-----v~~~~i~~~~FNLGYLPggDk~i~T------   66 (140)
T pfam06962         1 HVYAFDIQEEALENTKEKLEQAG---LSEIVELILDSHENIDEY-----IPEGPVKAAIFNLGYLPGGDKSITT------   66 (140)
T ss_pred             CEEEEECHHHHHHHHHHHHHHCC---CCCCEEEEECCHHHHHHH-----CCCCCCCEEEEECCCCCCCCCCCEE------
T ss_conf             95799609999999999999659---875689997798889863-----7646766899966768899987587------


Q ss_pred             HCCCCCCHHHHHHHHHHHCCCCCEEEEEC-C--H------HHHHHHHHHHHCCC-CCEEEEEECCCCCCCCEEEEEE
Q ss_conf             20566898999999998624698378702-8--8------88999999852178-8469998145896983099999
Q gi|255764482|r  117 HVMLEDSFEKWIRTACAIMRSSGQLSLIA-R--P------QSLIQIVNACARRI-GSLEITPLHPREGECASRILVT  183 (225)
Q Consensus       117 ~~~~~~~~~~~~~~a~~lLkpgG~~~~i~-~--~------~~l~~~l~~~~~~~-~~~~i~~v~~~~~~~~~~vlv~  183 (225)
T Consensus        67 ---~~~tTi~Al~~al~lL~~gG~i~i~~Y~GH~gG~eE~~aV~~~~~~L~~~~~~V~~~~-~~N~~~~pP~l~~Ie  139 (140)
T pfam06962        67 ---KPDTTLEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDAVLDFVSNLDQKKWNVLQYQ-FINQVNAPPFLIAIE  139 (140)
T ss_pred             ---CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEEEEE-CCCCCCCCCEEEEEE
T ss_conf             ---7720999999999963669899999979999879999999999984896057999997-156899998899996