HHsearch alignment for GI: 255764482 and conserved domain: smart00650
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.09 E-value=4.5e-10 Score=76.05 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=69.2
Q ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 24389985578999587843899999986799889999889899998899999806645222530200444235310000
Q gi|255764482|r 4 ASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNL 83 (225)
Q Consensus 4 a~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 83 (225)
T Consensus 6 v~~a~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~------~~n~~ii~~D~L~~~~~--- 74 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDLP--- 74 (169)
T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHH--CCCCCEEECCHHHHHHHHHHHCC------CCCEEEEECCHHCCCCC---
T ss_conf 88638999497999689702999999973--16353163788999999986410------79779995711125531---
Q ss_pred CCCCCCCCCEEEECCCCCCCC
Q ss_conf 123576520577226544644
Q gi|255764482|r 84 AGLKNNFYDHVIMNPPFNERI 104 (225)
Q Consensus 84 ~~~~~~~fDlii~nPPy~~~~ 104 (225)
T Consensus 75 ----~~~~~~iv~NLPY~Iss 91 (169)
T smart00650 75 ----KLQPYKVVGNLPYNIST 91 (169)
T ss_pred ----CCCCCEEEECCCCCCHH
T ss_conf ----15873699347630118