HHsearch alignment for GI: 255764482 and conserved domain: smart00650

>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.09  E-value=4.5e-10  Score=76.05  Aligned_cols=86  Identities=21%  Similarity=0.232  Sum_probs=69.2

Q ss_pred             HHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             24389985578999587843899999986799889999889899998899999806645222530200444235310000
Q gi|255764482|r    4 ASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNL   83 (225)
Q Consensus         4 a~~~~~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   83 (225)
T Consensus         6 v~~a~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~------~~n~~ii~~D~L~~~~~---   74 (169)
T smart00650        6 VRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDLP---   74 (169)
T ss_pred             HHHHCCCCCCEEEEECCCHHHHHHHHHHH--CCCCCEEECCHHHHHHHHHHHCC------CCCEEEEECCHHCCCCC---
T ss_conf             88638999497999689702999999973--16353163788999999986410------79779995711125531---


Q ss_pred             CCCCCCCCCEEEECCCCCCCC
Q ss_conf             123576520577226544644
Q gi|255764482|r   84 AGLKNNFYDHVIMNPPFNERI  104 (225)
Q Consensus        84 ~~~~~~~fDlii~nPPy~~~~  104 (225)
T Consensus        75 ----~~~~~~iv~NLPY~Iss   91 (169)
T smart00650       75 ----KLQPYKVVGNLPYNIST   91 (169)
T ss_pred             ----CCCCCEEEECCCCCCHH
T ss_conf             ----15873699347630118